Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CC2 | Genbank acc : NC_019538

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 427

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	308	lcl\|NC_019538.1_cdsid_YP_007010334.1	HHsearch (proba=100.00%)
Portal	313	lcl\|NC_019538.1_cdsid_YP_007010339.1	HHsearch (proba=100.00%)
TermL	316	lcl\|NC_019538.1_cdsid_YP_007010342.1	Blast (e-value=0)
MTP	314	lcl\|NC_019538.1_cdsid_YP_007010340.1	Blast (e-value=2e-69)
Sheath	315	lcl\|NC_019538.1_cdsid_YP_007010341.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	321	lcl\|NC_019538.1_cdsid_YP_007010347.1	HHsearch (proba=100.00%)
Hc2	320	lcl\|NC_019538.1_cdsid_YP_007010346.1	HHsearch (proba=100.00%)
Tc2	319	lcl\|NC_019538.1_cdsid_YP_007010345.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106286 protein:vir:6901 protein:vir:5670	Aeh1 RB69 KVP40	67 % 57 % 57 %
Portal	protein:vir:106282 protein:vir:103458 protein:vir:7208	Aeh1 RB32 T4	61 % 52 % 52 %
TermL	protein:vir:106290 protein:vir:108053 protein:vir:98262	Aeh1 JS98 RB43	64 % 58 % 58 %
MTP	protein:vir:106171 protein:vir:108048 protein:vir:101188	Aeh1 JS98 44RR2.8t	73 % 57 % 55 %
Sheath	protein:vir:106427 protein:vir:103456 protein:vir:7206	Aeh1 RB32 T4	69 % 53 % 53 %
Ad2	protein:vir:106428 protein:vir:81013 protein:vir:6589	Aeh1 Phi1 RB49	57 % 49 % 49 %
Hc2	protein:vir:106285 protein:vir:103452 protein:vir:6890	Aeh1 RB32 RB69	52 % 48 % 48 %
Tc2	protein:vir:106402 protein:vir:107931 protein:vir:98260	Aeh1 JS98 RB43	56 % 51 % 48 %