Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_VchM-138 | Genbank acc : NC_019518

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 67

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	35	lcl\|NC_019518.1_cdsid_YP_007006424.1	HHsearch (proba=100.00%)
Portal	23	lcl\|NC_019518.1_cdsid_YP_007006412.1	HHsearch (proba=100.00%)
TermL	22	lcl\|NC_019518.1_cdsid_YP_007006411.1	Blast (e-value=1e-103)
MTP	NOT FOUND
Sheath	47	lcl\|NC_019518.1_cdsid_YP_007006436.1	HHsearch (proba=100.00%)
Ad1	40	lcl\|NC_019518.1_cdsid_YP_007006429.1	HHsearch (proba=100.00%)
Hc1	45	lcl\|NC_019518.1_cdsid_YP_007006434.1	HHsearch (proba=98.05%)
Ne1	44	lcl\|NC_019518.1_cdsid_YP_007006433.1	HHsearch (proba=100.00%)
Tc1	46	lcl\|NC_019518.1_cdsid_YP_007006435.1	HHsearch (proba=96.88%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	5	2
Tc1<->Ad1	6	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103285 protein:vir:5255 protein:vir:104342	JK06 Aaphi23 RTP	25 % 24 % 22 %
Portal	protein:vir:5249 protein:vir:80040 protein:vir:78589	Aaphi23 B054 BcepNY3	27 % 22 % 19 %
TermL	protein:vir:96067 protein:vir:99572 protein:vir:96782	F8 BcepF1 phiHSIC	45 % 45 % 21 %
Sheath	protein:vir:5260 protein:vir:95263 protein:vir:80052	Aaphi23 Felix 01 B054	23 % 23 % 20 %
Ad1	protein:vir:5256 protein:vir:107756 protein:vir:104344	Aaphi23 BcepB1A RTP	29 % 21 % 20 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:101560	Felix 01 Aaphi23 Bcep43	25 % 20 % 17 %
Ne1	protein:vir:5257 protein:vir:99546 protein:vir:80037	Aaphi23 BcepF1 B054	29 % 25 % 24 %
Tc1	protein:vir:78612 protein:vir:3637 protein:vir:106763	BcepNY3 Bcep781 Bcep1	20 % 19 % 20 %