Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-TIM5 | Genbank acc : NC_019516

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 180

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	81	lcl\|NC_019516.1_cdsid_YP_007006072.1	HHsearch (proba=100.00%)
Portal	98	lcl\|NC_019516.1_cdsid_YP_007006089.1	HHsearch (proba=100.00%)
TermL	128	lcl\|NC_019516.1_cdsid_YP_007006119.1	Blast (e-value=5e-48)
MTP	NOT FOUND
Sheath	84	lcl\|NC_019516.1_cdsid_YP_007006075.1	HHsearch (proba=100.00%)
Ad1	80	lcl\|NC_019516.1_cdsid_YP_007006071.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	124	lcl\|NC_019516.1_cdsid_YP_007006115.1	HHsearch (proba=87.63%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	44	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79078 protein:vir:107882 protein:vir:99888	phiE255 BcepMu B3	26 % 26 % 19 %
Portal	protein:vir:99853 protein:vir:79233 protein:vir:99232	B3 Phage MP22 DMS3	23 % 20 % 20 %
TermL	protein:vir:80106 protein:vir:5248 protein:vir:103223	B054 Aaphi23 JK06	29 % 29 % 28 %
Sheath	protein:vir:107865 protein:vir:79092 protein:vir:79181	BcepMu phiE255 phiE202	19 % 18 % 16 %
Ad1	protein:vir:99848 protein:vir:79253 protein:vir:99222	B3 Phage MP22 DMS3	19 % 17 % 17 %
Ne1	protein:vir:102963 protein:vir:79034 protein:vir:105467	EJ-1 phiC2 KC5a	15 % 23 % 16 %