Virfam_CNT_anal:NC_019496

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiCP26F | Genbank acc : NC_019496

Category to which the Query Phage was assigned :

The queried phage was recognized as a Siphoviridae of Type1 (Read more about that Type)
Note that only the Adaptor was detected unambiguously

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 49

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	11	lcl\|NC_019496.1_cdsid_YP_007003997.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_019496.1_cdsid_YP_007003990.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_019496.1_cdsid_YP_007003988.1	Blast (e-value=2e-14)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	13	lcl\|NC_019496.1_cdsid_YP_007003999.1	HHsearch (proba=96.62%)
Hc1	14	lcl\|NC_019496.1_cdsid_YP_007004000.1	HHsearch (proba=88.89%)
Ne1	NOT FOUND
Tc1	15	lcl\|NC_019496.1_cdsid_YP_007004001.1	HHsearch (proba=83.78%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102605 protein:vir:105822 protein:vir:7990	Llij PMC Che8	32 % 32 % 32 %
Portal	protein:vir:102330 protein:vir:79043 protein:vir:96839	phi CD119 phiC2 EW	26 % 24 % 24 %
TermL	protein:vir:97448 protein:vir:95058 protein:vir:94499	92 X2 88	45 % 45 % 45 %
Ad1	protein:vir:78068 protein:vir:97329 protein:vir:94798	P35 52A 29	20 % 30 % 30 %
Hc1	protein:vir:5977 protein:vir:100134 protein:vir:80342	SPP1 phi1026b phi644-2	13 % 10 % 15 %
Tc1	protein:vir:10368 protein:vir:97070 protein:vir:1244	Xp10 OP1 phi ETA	16 % 15 % 13 %