Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : R4 | Genbank acc : NC_019414

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 86

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_019414.1_cdsid_YP_006990124.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_019414.1_cdsid_YP_006990121.1	HHsearch (proba=100.00%)
TermL	5	lcl\|NC_019414.1_cdsid_YP_006990120.1	Blast (e-value=1e-114)
MTP	14	lcl\|NC_019414.1_cdsid_YP_006990129.1	Blast (e-value=8e-21)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_019414.1_cdsid_YP_006990125.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_019414.1_cdsid_YP_006990126.1	HHsearch (proba=99.92%)
Ne1	12	lcl\|NC_019414.1_cdsid_YP_006990127.1	HHsearch (proba=100.00%)
Tc1	13	lcl\|NC_019414.1_cdsid_YP_006990128.1	HHsearch (proba=98.15%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99075 protein:vir:102605 protein:vir:105822	Wildcat Llij PMC	30 % 20 % 20 %
Portal	protein:vir:2500 protein:vir:99072 protein:vir:78537	TM4 Wildcat U2	32 % 24 % 21 %
TermL	protein:vir:4222 protein:vir:104081 protein:vir:7767	L5 Che12 Bxz2	40 % 39 % 39 %
MTP	protein:vir:104093 protein:vir:7778 protein:vir:4232	Che12 Bxz2 L5	34 % 34 % 32 %
Ad1	protein:vir:98481 protein:vir:78478 protein:vir:78254	VWB U2 Bethlehem	26 % 25 % 25 %
Hc1	protein:vir:2346 protein:vir:78288 protein:vir:7775	Bxb1 Bethlehem Bxz2	22 % 20 % 17 %
Ne1	protein:vir:7776 protein:vir:78503 protein:vir:78298	Bxz2 U2 Bethlehem	35 % 31 % 31 %
Tc1	protein:vir:98426 protein:vir:1643 protein:vir:99005	VWB r1t Wildcat	27 % 20 % 24 %