Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_CsaM_GAP32 | Genbank acc : NC_019401

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 545

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	253	lcl\|NC_019401.1_cdsid_YP_006987355.1	HHsearch (proba=100.00%)
Portal	248	lcl\|NC_019401.1_cdsid_YP_006987350.1	HHsearch (proba=100.00%)
TermL	272	lcl\|NC_019401.1_cdsid_YP_006987374.1	Blast (e-value=8e-57)
MTP	NOT FOUND
Sheath	201	lcl\|NC_019401.1_cdsid_YP_006987303.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	198	lcl\|NC_019401.1_cdsid_YP_006987300.1	HHsearch (proba=100.00%)
Hc2	NOT FOUND
Tc2	230	lcl\|NC_019401.1_cdsid_YP_006987332.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc2<->Ad2	32	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:98143 protein:vir:104915	Syn9 RB43 P-SSM2	32 % 32 % 31 %
Portal	protein:vir:106999 protein:vir:104500 protein:vir:103177	S-PM2 P-SSM4 Syn9	22 % 21 % 21 %
TermL	protein:vir:106989 protein:vir:80989 protein:vir:103169	S-PM2 Phi1 Syn9	27 % 26 % 26 %
Sheath	protein:vir:101187 protein:vir:101804 protein:vir:108052	44RR2.8t 31 JS98	22 % 22 % 21 %
Ad2	protein:vir:103004 protein:vir:104585 protein:vir:6889	Syn9 P-SSM4 RB69	21 % 20 % 20 %
Tc2	protein:vir:106402 protein:vir:103006 protein:vir:5659	Aeh1 Syn9 KVP40	22 % 22 % 20 %