Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 253 lcl|NC_019401.1_cdsid_YP_006987355.1 HHsearch (proba=100.00%)
Portal 248 lcl|NC_019401.1_cdsid_YP_006987350.1 HHsearch (proba=100.00%)
TermL 272 lcl|NC_019401.1_cdsid_YP_006987374.1 Blast (e-value=8e-57)
MTP NOT FOUND
Sheath 201 lcl|NC_019401.1_cdsid_YP_006987303.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 198 lcl|NC_019401.1_cdsid_YP_006987300.1 HHsearch (proba=100.00%)
Hc2 NOT FOUND
Tc2 230 lcl|NC_019401.1_cdsid_YP_006987332.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc2<->Ad2 32 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103181
protein:vir:98143
protein:vir:104915
Syn9
RB43
P-SSM2
32 %
32 %
31 %
Portal protein:vir:106999
protein:vir:104500
protein:vir:103177
S-PM2
P-SSM4
Syn9
22 %
21 %
21 %
TermL protein:vir:106989
protein:vir:80989
protein:vir:103169
S-PM2
Phi1
Syn9
27 %
26 %
26 %
Sheath protein:vir:101187
protein:vir:101804
protein:vir:108052
44RR2.8t
31
JS98
22 %
22 %
21 %
Ad2 protein:vir:103004
protein:vir:104585
protein:vir:6889
Syn9
P-SSM4
RB69
21 %
20 %
20 %
Tc2 protein:vir:106402
protein:vir:103006
protein:vir:5659
Aeh1
Syn9
KVP40
22 %
22 %
20 %