Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PhiS63 | Genbank acc : NC_017978

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 43

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_017978.1_cdsid_YP_006383509.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_017978.1_cdsid_YP_006383508.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_017978.1_cdsid_YP_006383506.1	Blast (e-value=1e-54)
MTP	11	lcl\|NC_017978.1_cdsid_YP_006383515.1	Blast (e-value=6e-30)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_017978.1_cdsid_YP_006383511.1	HHsearch (proba=99.95%)
Hc1	8	lcl\|NC_017978.1_cdsid_YP_006383512.1	HHsearch (proba=100.00%)
Ne1	9	lcl\|NC_017978.1_cdsid_YP_006383513.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_017978.1_cdsid_YP_006383514.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:93616 protein:vir:96762 protein:vir:8324	phi 4795 VP882 Corndog	15 % 14 % 11 %
Portal	protein:vir:1380 protein:vir:102118 protein:vir:102080	phi3626 phiSM101 Fah	29 % 28 % 28 %
TermL	protein:vir:1883 protein:vir:188 protein:vir:4335	HK022 HK97 D3	29 % 29 % 26 %
MTP	protein:vir:1388 protein:vir:102037 protein:vir:102845	phi3626 Fah Cherry	36 % 26 % 26 %
Ad1	protein:vir:102158 protein:vir:102083 protein:vir:102863	phiSM101 Fah Cherry	34 % 30 % 30 %
Hc1	protein:vir:1385 protein:vir:102144 protein:vir:81177	phi3626 phiSM101 Geobacillus virus E2	77 % 25 % 23 %
Ne1	protein:vir:1386 protein:vir:1273 protein:vir:4347	phi3626 phi-105 D3	59 % 28 % 23 %
Tc1	protein:vir:1387 protein:vir:102086 protein:vir:102888	phi3626 Fah Cherry	54 % 27 % 27 %