BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_017978.1_cdsid_YP_006383515.1 [gene=A324_gp11] [protein=gp11] [protein_id=YP_006383515.1] [location=6719..7321] (200 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: maj... 121 6e-30 gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: pu... 53 3e-09 gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: ma... 53 3e-09 gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: ma... 53 3e-09 gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: ma... 53 3e-09 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 49 3e-08 gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: ph... 28 0.063 gi|13580|lcl|protein:vir:4706 Length: 133 # NCBI annotation: phi... 25 0.82 gi|6166|lcl|protein:vir:98344 Length: 317 # NCBI annotation: hyp... 24 1.4 gi|13181|lcl|protein:vir:81108 Length: 317 # NCBI annotation: hy... 24 1.4 gi|16588|lcl|protein:vir:9416 Length: 317 # NCBI annotation: phi... 24 1.4 gi|12529|lcl|protein:vir:80010 Length: 317 # NCBI annotation: hy... 24 1.4 gi|17446|lcl|protein:vir:4606 Length: 317 # NCBI annotation: hyp... 24 1.4 gi|7052|lcl|protein:vir:98634 Length: 196 # NCBI annotation: put... 23 1.8 gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: maj... 23 2.8 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 23 3.3 gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA... 22 5.6 >gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612840;genbank:gi:20065974;genbank:GeneID :935777 Length = 198 Score = 121 bits (303), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 1/184 (0%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGT 65 G KD+Y+A + +++A Y T P++L +A + K K T E DD +E+ F+ Sbjct: 11 GCKDIYIAIVNKNTATEYATATPIKLGRALNAKVTTKKTVESTESDDTIEETFESFDSIE 70 Query: 66 IEIEGDYLSRKIREMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRVNF 125 IE + + LS + + ++RG G N DD+AK+VAIG+R + TNG Y+F W+Y F Sbjct: 71 IEFDVNKLSPEQKAILRGATYEDGFLINNVDDQAKEVAIGWRARQTNGKYEFVWYYCGKF 130 Query: 126 GEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGVDADEMDLADAGS-AKEVLDGWFG 184 D++ ET KK K Q K+KGT R+KD N ++ DE L ++ + AK + WF Sbjct: 131 NSGWDDQYETNGKKPKTQTDKMKGTFYGRQKDGNTSIEVDETFLLESHNDAKSSITNWFS 190 Query: 185 QVQE 188 +VQE Sbjct: 191 KVQE 194 >gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459974;genbank:gi:85701389;genbank:GeneID :3882150 Length = 202 Score = 52.8 bits (125), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 6 GLKDLYVAPITED--SAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEE 63 G+ +L A + +D SA YT K ++ A VK K +E ++ D+ + E E Sbjct: 13 GVDNLVYAKVLQDDSSAIKYTDVK--KMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGE 70 Query: 64 GTIEIEGDYLSRKIREMIRGHKNL-GGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYR 122 +EIE LS + I G + G+ + + +AIG+R N Y++ W + Sbjct: 71 TEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLK 130 Query: 123 VNFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGVDADEMDLADAGSAKEVLDGW 182 +EE EEAET K Q K+KG+ I R D ADE + K V D W Sbjct: 131 GKLSQEE-EEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADE---DEPTFTKLVGDNW 186 Query: 183 FGQVQE 188 F +V E Sbjct: 187 FNKVYE 192 >gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338193;genbank:gi:77020189;genbank:GeneID :3703750 Length = 202 Score = 52.8 bits (125), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 6 GLKDLYVAPITED--SAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEE 63 G+ +L A + +D SA YT K ++ A VK K +E ++ D+ + E E Sbjct: 13 GVDNLVYAKVLQDDSSAIKYTDVK--KMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGE 70 Query: 64 GTIEIEGDYLSRKIREMIRGHKNL-GGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYR 122 +EIE LS + I G + G+ + + +AIG+R N Y++ W + Sbjct: 71 TEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLK 130 Query: 123 VNFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGVDADEMDLADAGSAKEVLDGW 182 +EE EEAET K Q K+KG+ I R D ADE + K V D W Sbjct: 131 GKLSQEE-EEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADE---DEPTFTKLVGDNW 186 Query: 183 FGQVQE 188 F +V E Sbjct: 187 FNKVYE 192 >gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338142;genbank:gi:77020241;genbank:GeneID :3703754 Length = 202 Score = 52.8 bits (125), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 6 GLKDLYVAPITED--SAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEE 63 G+ +L A + +D SA YT K ++ A VK K +E ++ D+ + E E Sbjct: 13 GVDNLVYAKVLQDDSSAIKYTDVK--KMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGE 70 Query: 64 GTIEIEGDYLSRKIREMIRGHKNL-GGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYR 122 +EIE LS + I G + G+ + + +AIG+R N Y++ W + Sbjct: 71 TEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLK 130 Query: 123 VNFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGVDADEMDLADAGSAKEVLDGW 182 +EE EEAET K Q K+KG+ I R D ADE + K V D W Sbjct: 131 GKLSQEE-EEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADE---DEPTFTKLVGDNW 186 Query: 183 FGQVQE 188 F +V E Sbjct: 187 FNKVYE 192 >gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512320;genbank:gi:89152489;genbank:GeneID :3953030 Length = 202 Score = 52.8 bits (125), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 9/186 (4%) Query: 6 GLKDLYVAPITED--SAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEE 63 G+ +L A + +D SA YT K ++ A VK K +E ++ D+ + E E Sbjct: 13 GVDNLVYAKVLQDDSSAIKYTDVK--KMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGE 70 Query: 64 GTIEIEGDYLSRKIREMIRGHKNL-GGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYR 122 +EIE LS + I G + G+ + + +AIG+R N Y++ W + Sbjct: 71 TEVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLK 130 Query: 123 VNFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGVDADEMDLADAGSAKEVLDGW 182 +EE EEAET K Q K+KG+ I R D ADE + K V D W Sbjct: 131 GKLSQEE-EEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADE---DEPTFTKLVGDNW 186 Query: 183 FGQVQE 188 F +V E Sbjct: 187 FNKVYE 192 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 49.3 bits (116), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDD---VQDESDNDFE 62 GL ++A + +D+ + P L A S+K K E Y D+ Q S D + Sbjct: 7 GLDMFHIAEVLKDTKDELEFSVPEELPGAVSMKLDPKSETETFYADNGAFAQLSSLGDID 66 Query: 63 EGTIEIEGDYLSRKIREMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYW 119 G +E+ L ++ I G GG+ +ADD+ ++A+G+R K++ G Y++YW Sbjct: 67 -GEMEVAD--LPLDMQAKIFGKTVEGGIHFSSADDRTLEIALGFRAKISTGGYRYYW 120 >gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: phage major tail protein, phi13 family subfamily # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699936;genbank:gi:110804026;genbank:GeneI D:4206655 Length = 210 Score = 28.5 bits (62), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%) Query: 7 LKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGTI 66 +K L+VA + + + P L + K K +P Y + + + ++ + Sbjct: 15 VKRLFVAHLLTEEIGKISFDTPRYLEGVKQIGIKPKQNTDPYYHEGRKIFDEQTIQDVAV 74 Query: 67 EIEGDYLSRKIREMIRGHK--NLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRVN 124 I L+ + + GHK GG+ N +D A +AI Y + G+ K+ Y Sbjct: 75 TINITDLTDEDECYVMGHKLAKTGGVIR-NDNDIAPTLAIMYEAEKAQGVTKYGILYAGT 133 Query: 125 FGEEEDEEAETIAKKGKRQNAKIKGTIIP 153 FG DE+ + K Q K++ + P Sbjct: 134 FG-LSDEDIKDKEGKSNFQPKKLQASFRP 161 >gi|13580|lcl|protein:vir:4706 Length: 133 # NCBI annotation: phi PVL ORF 13 homologue # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061638;genbank:gi:9635725;genbank:GeneID: 1262982 Length = 133 Score = 24.6 bits (52), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 4/103 (3%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGT 65 G+ + Y API +D+ + TG R+ ++ E Y DD+ + G Sbjct: 30 GVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMV--AATAVSNGK 87 Query: 66 IEIEGDYLSRKI--REMIRGHKNLGGMTAINADDKAKDVAIGY 106 + ++ +++ + + G K G A D DVAI + Sbjct: 88 LSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVF 130 >gi|6166|lcl|protein:vir:98344 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918936;genbank:gi:119443698;genbank:GeneI D:4594506 Length = 317 Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGT 65 G+ + Y API +D+ + TG R+ ++ E Y DD+ + G Sbjct: 30 GVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMV--AATAVSNGK 87 Query: 66 IEIEGDYLSRKI--REMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRV 123 + ++ +++ + + G K G A D DVAI + + + ++ ++ Sbjct: 88 LSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFERRNHDESSEWVGLFKG 147 Query: 124 NFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGV 162 F + +T K + QN ++G I R D + V Sbjct: 148 KF-TRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHV 185 >gi|13181|lcl|protein:vir:81108 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429880;genbank:gi:156603933;genbank:Ge neID:5525328 Length = 317 Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGT 65 G+ + Y API +D+ + TG R+ ++ E Y DD+ + G Sbjct: 30 GVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMV--AATAVSNGK 87 Query: 66 IEIEGDYLSRKI--REMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRV 123 + ++ +++ + + G K G A D DVAI + + + ++ ++ Sbjct: 88 LSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFERRNHDESSEWVGLFKG 147 Query: 124 NFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGV 162 F + +T K + QN ++G I R D + V Sbjct: 148 KF-TRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHV 185 >gi|16588|lcl|protein:vir:9416 Length: 317 # NCBI annotation: phi PVL orf 13-like protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803394;genbank:gi:29028706;genbank:GeneID :1258144 Length = 317 Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGT 65 G+ + Y API +D+ + TG R+ ++ E Y DD+ + G Sbjct: 30 GVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMV--AATAVSNGK 87 Query: 66 IEIEGDYLSRKI--REMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRV 123 + ++ +++ + + G K G A D DVAI + + + ++ ++ Sbjct: 88 LSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFERRNHDESSEWVGLFKG 147 Query: 124 NFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGV 162 F + +T K + QN ++G I R D + V Sbjct: 148 KF-TRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHV 185 >gi|12529|lcl|protein:vir:80010 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430008;genbank:gi:156604063;genbank:Ge neID:5525470 Length = 317 Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 5/159 (3%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRLMKAASVKTKLKYTNEPVYFDDVQDESDNDFEEGT 65 G+ + Y API +D+ + TG R+ ++ E Y DD+ + G Sbjct: 30 GVSNFYYAPILKDTENEWETGAGTRIRFLKEIEVDRPQDTEEDYGDDMV--AATAVSNGK 87 Query: 66 IEIEGDYLSRKI--REMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRV 123 + ++ +++ + + G K G A D DVAI + + + ++ ++ Sbjct: 88 LSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFERRNHDESSEWVGLFKG 147 Query: 124 NFGEEEDEEAETIAKKGKRQNAKIKGTIIPRKKDRNIGV 162 F + +T K + QN ++G I R D + V Sbjct: 148 KF-TRSSIKGQTKQDKVEFQNDDVEGNFIDRLFDESSHV 185 >gi|17446|lcl|protein:vir:4606 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058451;genbank:gi:9635177;genbank:GeneID :1262712 Length = 317 Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 15/26 (57%) Query: 6 GLKDLYVAPITEDSAENYTTGKPVRL 31 G+ + Y API +D+ + TG R+ Sbjct: 30 GVSNFYYAPILKDTENEWETGAGTRI 55 >gi|7052|lcl|protein:vir:98634 Length: 196 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039929;genbank:gi:126011104;genbank:Ge neID:4818470 Length = 196 Score = 23.5 bits (49), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 66 IEIEGDYLSRKIREMIRGHKNLGGMTAINADDKAKDVAIGYRTKLTNGLYKFYWWYRVNF 125 +E E + ++ ++I G+K+ G+T + D ++ +V++ T G + +++ F Sbjct: 71 METEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKNAYLGFFKGTF 130 >gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680492;swissprot:trembl:p94216;genbank:gi :22296532;interpro:IPR006490;uniprot:P94216;genbank:Gene ID:951722 Length = 202 Score = 23.1 bits (48), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 106 YRTKLTNGLYKFYWWYRVNFGEEEDEEAETIAKKGKRQNAKIKGTIIPR 154 +RTKL+NG Y + + F + +T+ I+G+ IPR Sbjct: 113 FRTKLSNGKYVWVGMLKGMF-SLPGVDTKTVDGTPDPSADSIEGSFIPR 160 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 22.7 bits (47), Expect = 3.3, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 4 PKGLKDLYVAPITEDSAENYTTGKPVRLMK 33 P +DL V P+ + AE Y R M+ Sbjct: 289 PLKFQDLIVTPLGAECAEAYAWSADPRYMR 318 >gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA packaging protein # Family: family:all:140 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040581;genbank:gi:9626245;genbank:GeneID: 2703524 Length = 641 Score = 21.9 bits (45), Expect = 5.6, Method: Compositional matrix adjust. Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Query: 82 RGHKNLGGMTAINADDKAKDVAIGY 106 RG LGG A N +K+ DVA GY Sbjct: 154 RGFWCLGGKAAKNYREKSVDVA-GY 177 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.132 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,019 Number of Sequences: 514 Number of extensions: 4763 Number of successful extensions: 30 Number of sequences better than 100.0: 20 Number of HSP's better than 100.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 20 length of query: 200 length of database: 206,069 effective HSP length: 67 effective length of query: 133 effective length of database: 171,631 effective search space: 22826923 effective search space used: 22826923 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 35 (18.1 bits)