Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : REQ3 | Genbank acc : NC_016654

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 60

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	46	lcl\|NC_016654.1_cdsid_YP_005087238.1	HHsearch (proba=99.79%)
Portal	36	lcl\|NC_016654.1_cdsid_YP_005087228.1	HHsearch (proba=100.00%)
TermL	35	lcl\|NC_016654.1_cdsid_YP_005087227.1	Blast (e-value=1e-61)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	42	lcl\|NC_016654.1_cdsid_YP_005087234.1	HHsearch (proba=99.73%)
Hc1	43	lcl\|NC_016654.1_cdsid_YP_005087235.1	HHsearch (proba=97.52%)
Ne1	44	lcl\|NC_016654.1_cdsid_YP_005087236.1	HHsearch (proba=99.90%)
Tc1	45	lcl\|NC_016654.1_cdsid_YP_005087237.1	HHsearch (proba=95.39%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1579 protein:vir:2344 protein:vir:79709	phig1e Bxb1 LL-H	23 % 25 % 21 %
Portal	protein:vir:98883 protein:vir:1587 protein:vir:78907	BCJA1c phig1e A006	17 % 17 % 17 %
TermL	protein:vir:102941 protein:vir:106551 protein:vir:93748	EJ-1 Lj965 55	32 % 30 % 29 %
Ad1	protein:vir:79701 protein:vir:9821 protein:vir:98900	LL-H 315.4 BCJA1c	20 % 19 % 16 %
Hc1	protein:vir:44 protein:vir:80934 protein:vir:98924	A118 A500 BCJA1c	10 % 11 % 15 %
Ne1	protein:vir:78894 protein:vir:99101 protein:vir:8669	A006 Qyrzula Rosebush	22 % 26 % 26 %
Tc1	protein:vir:96125 protein:vir:96894 protein:vir:1244	37 EW phi ETA	10 % 10 % 10 %