Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 9 lcl|NC_016166.1_cdsid_YP_004934710.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_016166.1_cdsid_YP_004934704.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_016166.1_cdsid_YP_004934703.1 Blast (e-value=1e-13)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 12 lcl|NC_016166.1_cdsid_YP_004934713.1 HHsearch (proba=99.80%)
Hc1 NOT FOUND
Ne1 13 lcl|NC_016166.1_cdsid_YP_004934714.1 HHsearch (proba=99.72%)
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106590
protein:vir:98480
protein:vir:96490
Lj965
VWB
2972
20 %
16 %
13 %
Portal protein:vir:78161
protein:vir:108215
protein:vir:99853
Min1
Giles
B3
17 %
16 %
15 %
TermL protein:vir:93883
protein:vir:1883
protein:vir:105001
3A
HK022
W Beta
16 %
16 %
16 %
Ad1 protein:vir:79253
protein:vir:99222
protein:vir:1993
Phage MP22
DMS3
Mu
21 %
21 %
19 %
Ne1 protein:vir:1988
protein:vir:79225
protein:vir:99196
Mu
Phage MP22
DMS3
24 %
25 %
25 %