Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : GTE7 | Genbank acc : NC_016166

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 103

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_016166.1_cdsid_YP_004934710.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_016166.1_cdsid_YP_004934704.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_016166.1_cdsid_YP_004934703.1	Blast (e-value=1e-13)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	12	lcl\|NC_016166.1_cdsid_YP_004934713.1	HHsearch (proba=99.80%)
Hc1	NOT FOUND
Ne1	13	lcl\|NC_016166.1_cdsid_YP_004934714.1	HHsearch (proba=99.72%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106590 protein:vir:98480 protein:vir:96490	Lj965 VWB 2972	20 % 16 % 13 %
Portal	protein:vir:78161 protein:vir:108215 protein:vir:99853	Min1 Giles B3	17 % 16 % 15 %
TermL	protein:vir:93883 protein:vir:1883 protein:vir:105001	3A HK022 W Beta	16 % 16 % 16 %
Ad1	protein:vir:79253 protein:vir:99222 protein:vir:1993	Phage MP22 DMS3 Mu	21 % 21 % 19 %
Ne1	protein:vir:1988 protein:vir:79225 protein:vir:99196	Mu Phage MP22 DMS3	24 % 25 % 25 %