Virfam_CNT_anal:NC_016163

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiR1-37 | Genbank acc : NC_016163

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 367

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	98	lcl\|NC_016163.1_cdsid_YP_004934331.1	HHsearch (proba=100.00%)
Portal	161	lcl\|NC_016163.1_cdsid_YP_004934394.1	HHsearch (proba=100.00%)
TermL	144	lcl\|NC_016163.1_cdsid_YP_004934377.1	Blast (e-value=7e-25)
MTP	NOT FOUND
Sheath	150	lcl\|NC_016163.1_cdsid_YP_004934383.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95512 protein:vir:79548	F10 cdtI	22 % 21 %
Portal	protein:vir:108049 protein:vir:5665 protein:vir:6896	JS98 KVP40 RB69	18 % 18 % 18 %
TermL	protein:vir:8929 protein:vir:94185 protein:vir:104946	phiKZ phiEL P-SSM2	33 % 22 % 20 %
Sheath	protein:vir:104477 protein:vir:106984 protein:vir:103168	P-SSM4 S-PM2 Syn9	18 % 18 % 18 %