Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiKZ | Genbank acc : NC_004629 | Aclame index mge :163

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 306

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	NOT FOUND
Portal	NOT FOUND
TermL	25	lcl\|Aclame:protein:vir:8929\|NCBI_annot:ORF025\|genbank:acc:NP_803591;genbank:gi:29134961;genbank:Gene	Blast (e-value=0)
MTP	NOT FOUND
Sheath	29	lcl\|Aclame:protein:vir:8933\|NCBI_annot:ORF029\|genbank:acc:NP_803595;genbank:gi:29134965;genbank:Gene	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	294	lcl\|Aclame:protein:vir:9198\|NCBI_annot:ORF294\|genbank:acc:NP_803860;genbank:gi:29135230;genbank:Gene	HHsearch (proba=81.76%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
TermL	protein:vir:8929 protein:vir:94185 protein:vir:108053	phiKZ phiEL JS98	100 % 30 % 17 %
Sheath	protein:vir:8933 protein:vir:94259 protein:vir:80779	phiKZ phiEL phiEF24C	100 % 25 % 14 %
Tc1	protein:vir:104224	T5	35 %