Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Dp-1 | Genbank acc : NC_015274

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 72

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	43	lcl\|NC_015274.1_cdsid_YP_004306931.1	HHsearch (proba=100.00%)
Portal	40	lcl\|NC_015274.1_cdsid_YP_004306928.1	HHsearch (proba=99.95%)
TermL	37	lcl\|NC_015274.1_cdsid_YP_004306925.1	Blast (e-value=1e-119)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	54	lcl\|NC_015274.1_cdsid_YP_004306942.1	HHsearch (proba=73.75%)
Ne1	47	lcl\|NC_015274.1_cdsid_YP_004306935.1	HHsearch (proba=100.00%)
Tc1	48	lcl\|NC_015274.1_cdsid_YP_004306936.1	HHsearch (proba=78.61%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Hc1	6	3
Ne1<->Hc1	7	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4902 protein:vir:2736 protein:vir:96490	Sfi11 O1205 2972	32 % 32 % 31 %
Portal	protein:vir:94666	mu1/6	14 %
TermL	protein:vir:102941 protein:vir:106551 protein:vir:1235	EJ-1 Lj965 phi ETA	52 % 46 % 26 %
Hc1	protein:vir:1385 protein:vir:3872 protein:vir:81103	phi3626 A2 tp310-1	18 % 17 % 13 %
Ne1	protein:vir:102190 protein:vir:101508 protein:vir:7449	PBI1 PLot Barnyard	33 % 32 % 26 %
Tc1	protein:vir:93902 protein:vir:1892 protein:vir:102086	3A HK022 Fah	16 % 15 % 18 %