Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LeBron | Genbank acc : NC_014461

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 123

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|NC_014461.1_cdsid_YP_003857139.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_014461.1_cdsid_YP_003857136.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_014461.1_cdsid_YP_003857135.1	Blast (e-value=6e-66)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	9	lcl\|NC_014461.1_cdsid_YP_003857140.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	11	lcl\|NC_014461.1_cdsid_YP_003857142.1	HHsearch (proba=92.81%)
Tc1	12	lcl\|NC_014461.1_cdsid_YP_003857143.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99075 protein:vir:102605 protein:vir:105822	Wildcat Llij PMC	39 % 21 % 21 %
Portal	protein:vir:99072 protein:vir:2500 protein:vir:2427	Wildcat TM4 D29	34 % 30 % 20 %
TermL	protein:vir:99071 protein:vir:8098 protein:vir:108214	Wildcat Che9c Giles	32 % 26 % 24 %
Ad1	protein:vir:99002 protein:vir:78478 protein:vir:78254	Wildcat U2 Bethlehem	35 % 22 % 22 %
Ne1	protein:vir:99004 protein:vir:95062 protein:vir:106506	Wildcat X2 phiAsp2	23 % 18 % 16 %
Tc1	protein:vir:99005 protein:vir:102609 protein:vir:105826	Wildcat Llij PMC	32 % 20 % 20 %