Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiFL1A | Genbank acc : NC_013646

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	45	lcl\|NC_013646.1_cdsid_YP_003347502.1	HHsearch (proba=100.00%)
Portal	40	lcl\|NC_013646.1_cdsid_YP_003347497.1	HHsearch (proba=100.00%)
TermL	39	lcl\|NC_013646.1_cdsid_YP_003347496.1	Blast (e-value=1e-142)
MTP	50	lcl\|NC_013646.1_cdsid_YP_003347507.1	Blast (e-value=3e-57)
Sheath	NOT FOUND
Ad1	46	lcl\|NC_013646.1_cdsid_YP_003347503.1	HHsearch (proba=100.00%)
Hc1	47	lcl\|NC_013646.1_cdsid_YP_003347504.1	HHsearch (proba=100.00%)
Ne1	48	lcl\|NC_013646.1_cdsid_YP_003347505.1	HHsearch (proba=99.96%)
Tc1	49	lcl\|NC_013646.1_cdsid_YP_003347506.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9927 protein:vir:9875 protein:vir:106647	315.6 315.5 187	60 % 34 % 30 %
Portal	protein:vir:9922 protein:vir:78805 protein:vir:103951	315.6 80alpha phiNM	62 % 34 % 34 %
TermL	protein:vir:105897 protein:vir:94084 protein:vir:2731	phiETA3 96 O1205	59 % 59 % 57 %
MTP	protein:vir:9932 protein:vir:94505 protein:vir:5980	315.6 phiJL-1 SPP1	55 % 50 % 36 %
Ad1	protein:vir:9928 protein:vir:94507 protein:vir:741	315.6 phiJL-1 Tuc2009	49 % 38 % 37 %
Hc1	protein:vir:9929 protein:vir:94514 protein:vir:106629	315.6 phiJL-1 187	35 % 28 % 19 %
Ne1	protein:vir:9930 protein:vir:4906 protein:vir:2740	315.6 Sfi11 O1205	46 % 29 % 29 %
Tc1	protein:vir:9931 protein:vir:99537 protein:vir:94547	315.6 Lj928 phiJL-1	39 % 23 % 20 %