Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : D108 | Genbank acc : NC_013594

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_013594.1_cdsid_YP_003335782.1	HHsearch (proba=100.00%)
Portal	28	lcl\|NC_013594.1_cdsid_YP_003335776.1	HHsearch (proba=100.00%)
TermL	27	lcl\|NC_013594.1_cdsid_YP_003335775.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	39	lcl\|NC_013594.1_cdsid_YP_003335787.1	HHsearch (proba=100.00%)
Ad1	36	lcl\|NC_013594.1_cdsid_YP_003335784.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	30	lcl\|NC_013594.1_cdsid_YP_003335778.1	HHsearch (proba=100.00%)
Tc1	37	lcl\|NC_013594.1_cdsid_YP_003335785.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	6	4
Ne1<->Tc1	7	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1991 protein:vir:79246 protein:vir:99228	Mu Phage MP22 DMS3	99 % 49 % 49 %
Portal	protein:vir:1986 protein:vir:79233 protein:vir:99232	Mu Phage MP22 DMS3	99 % 46 % 45 %
TermL	protein:vir:1985 protein:vir:79096 protein:vir:107886	Mu phiE255 BcepMu	98 % 47 % 46 %
Sheath	protein:vir:1996 protein:vir:4463 protein:vir:4517	Mu ST64B V	100 % 38 % 37 %
Ad1	protein:vir:1993 protein:vir:103846 protein:vir:99848	Mu D3112 B3	97 % 32 % 28 %
Ne1	protein:vir:1988 protein:vir:103841 protein:vir:79225	Mu D3112 Phage MP22	99 % 37 % 34 %
Tc1	protein:vir:1994 protein:vir:10327 protein:vir:107857	Mu VHML BcepMu	99 % 13 % 16 %