Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KS9 | Genbank acc : NC_013055

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	23	lcl\|NC_013055.1_cdsid_YP_003090180.1	HHsearch (proba=100.00%)
Portal	22	lcl\|NC_013055.1_cdsid_YP_003090179.1	HHsearch (proba=100.00%)
TermL	21	lcl\|NC_013055.1_cdsid_YP_003090178.1	Blast (e-value=4e-90)
MTP	29	lcl\|NC_013055.1_cdsid_YP_003090186.1	Blast (e-value=3e-68)
Sheath	NOT FOUND
Ad1	25	lcl\|NC_013055.1_cdsid_YP_003090182.1	HHsearch (proba=100.00%)
Hc1	26	lcl\|NC_013055.1_cdsid_YP_003090183.1	HHsearch (proba=100.00%)
Ne1	27	lcl\|NC_013055.1_cdsid_YP_003090184.1	HHsearch (proba=100.00%)
Tc1	28	lcl\|NC_013055.1_cdsid_YP_003090185.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	35 %
Portal	protein:vir:100150 protein:vir:4454 protein:vir:483	phi1026b ST64B P27	25 % 25 % 25 %
TermL	protein:vir:4335 protein:vir:481 protein:vir:80335	D3 P27 phi644-2	38 % 36 % 35 %
MTP	protein:vir:100241 protein:vir:100083 protein:vir:1439	Bcep176 phi1026b phiE125	84 % 74 % 74 %
Ad1	protein:vir:1435 protein:vir:80320 protein:vir:100103	phiE125 phi644-2 phi1026b	25 % 24 % 22 %
Hc1	protein:vir:80342 protein:vir:1436 protein:vir:100134	phi644-2 phiE125 phi1026b	82 % 81 % 67 %
Ne1	protein:vir:100075 protein:vir:100243 protein:vir:80362	phi1026b Bcep176 phi644-2	86 % 86 % 84 %
Tc1	protein:vir:100242 protein:vir:80371 protein:vir:100116	Bcep176 phi644-2 phi1026b	71 % 61 % 61 %