Query lcl|NC_013055.1_cdsid_YP_003090180.1 [gene=BuPhKS9_gp23] [protein=protease/scaffold protein gp4] [protein_id=YP_003090180.1] [location=15552..16307] Match_columns 251 No_of_seqs 205 out of 3262 Neff 8.9 Searched_HMMs 1612 Date Thu Nov 7 12:52:55 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_23 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_23_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:95512 Length: 693 100.0 3.3E-52 2.1E-55 302.8 21.8 239 1-251 33-277 (693) 2 protein:vir:79548 Length: 652 100.0 1.4E-51 8.9E-55 299.3 23.7 238 1-251 1-240 (652) 3 protein:vir:96125 Length: 140 1.4 20 0.012 13.5 -0.6 90 155-251 1-90 (140) 4 protein:vir:4339 Length: 395 # 1.1 57 0.035 10.9 2.8 95 157-251 1-104 (395) 5 protein:vir:100135 Length: 418 0.6 1.1E+02 0.067 9.4 4.1 83 138-251 1-83 (418) 6 protein:vir:79544 Length: 70 # 0.5 1.3E+02 0.078 9.0 2.2 65 142-208 1-70 (70) 7 protein:vir:107096 Length: 145 0.5 86 0.054 9.9 -0.5 90 155-251 1-90 (145) 8 protein:vir:105337 Length: 145 0.5 88 0.054 9.9 -0.5 90 155-251 1-90 (145) 9 protein:vir:4700 Length: 415 # 0.5 1.3E+02 0.081 8.9 2.2 64 171-251 1-64 (415) 10 protein:vir:4600 Length: 415 # 0.5 1.3E+02 0.081 8.9 2.2 64 171-251 1-64 (415) No 1 >protein:vir:95512 Length: 693 # NCBI annotation: Putative Clp protease # Family: family:all:62 # ACLAME annotation(s): go:0008236 - serine-type peptidase activity; phi:0000017 - phage prohead/capsid assembly # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293349;genbank:gi:148912770;genbank:GeneID:5228164 Probab=100.00 E-value=3.3e-52 Score=302.81 Aligned_cols=239 Identities=40% Similarity=0.680 Sum_probs=183.5 Q ss_pred CccCCCCcEEEEEEeeeecCccchhhhhHHHHHHHHhCC-CCCeEEEEEecCCCcHHHHHHHHHHHHhcCCeEEEEecch Q lcl|NC_013055. 1 MKASDDGTVATVYLYDVIVTDEWWGGVSAQSFVQALAGI-TADTIHLRINSPGGDVFAARAMETAIRGHSARVIAHVDGV 79 (251) Q Consensus 1 ~~a~~~~~va~I~i~G~I~~~~~~~~~~~~~i~~al~~~-~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~pv~~~v~g~ 79 (251) |++.+++ ++.|+|||+|+. | ++++.+|...|+.. +.+.|.|+||||||+|+++.+||++||+++.+|+++|+|+ T Consensus 33 i~~~~~~-~~ei~iy~~Ig~--w--gita~~f~~~L~~~~d~~~I~v~INSpGGdV~~G~aIyn~Lk~~~~~Vtv~vdGl 107 (693) T protein:vir:95 33 IKAAGRG-VAEVLLYDEIGV--W--GITALQFARDLKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYIDGL 107 (693) T ss_pred eeecCCC-eeEEEEeecccc--c--ccCHHHHHHHHHhcCCCceeEEEEECCCCchhhHHHHHHHHhhcCCCeEEEEeeh Confidence 8887665 789999999963 2 57888888888764 4578999999999999999999999999999999999999 Q ss_pred hhhHHHHHHhcccceEEeeceeeeeeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCeeeCH Q lcl|NC_013055. 80 AASAASFVMLAADEVEITDGAFVMIHNAWTFAMGNADDLRESAKLLDAVDASLVRTYAKETGQSEDDISAWMAAETWMSS 159 (251) Q Consensus 80 aaS~a~~ia~a~~~~~~~~~s~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~ta 159 (251) |||+|++|+++|++++|.+++.+|+|+|++...++..+++...+.++++.+.+..+|++++|++.+++.++|++++|||+ T Consensus 108 AASaASvIamagd~i~m~~~a~~MIH~p~~~~~Gna~dl~~~a~~L~~~~~~i~~~Y~~ktG~~~e~i~~~m~~etwlta 187 (693) T protein:vir:95 108 AASMASVIAMAGDTIYMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALLKEETWMNG 187 (693) T ss_pred hhhHHHHHHhcCCeEEecCCCeEEEEccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhhhcCCCH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhccchhcccCcHHHHH-HHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhh-hhcccccccchhhHHHHH Q lcl|NC_013055. 160 DEAVQRGFADRLAGAGADAQ-ASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPD-SKPAEPAPPPQASAAAPD 237 (251) Q Consensus 160 ~eA~~~GliD~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 237 (251) +||+++||||+|........ ...+.+..+.++|+.++....++...+.... ..+.+++. ..|..+.+.. +. T Consensus 188 ~EAve~Gf~Dei~e~~~~~a~~~~~~~~~~~~~p~~l~~~~~~~~~~p~~~~-~~PaPTPaaaaPaaP~aaa------p~ 260 (693) T protein:vir:95 188 REAVAAGFADQLTEPLQAAAHLSSKRMQEFAHMPEALKTLLAPRAQTPAAPA-NTPAPTPASAAPAAPVAAA------PT 260 (693) T ss_pred HHHHhccchhhhhhhhHHHHhhHHHHHHHhhchHHHHHHHHhhhcccccccc-cCcccCccCCCCCCCccCC------CC Confidence 99999999999976555433 3455677888999988766555443322211 11111111 1111111100 00 Q ss_pred HHHHHHHHHHHH---hC Q lcl|NC_013055. 238 MDAMRRRLELAQ---RS 251 (251) Q Consensus 238 ~~~~~~~~~~~~---~~ 251 (251) ...++++...+| ++ T Consensus 261 ~adirA~~~aae~~r~a 277 (693) T protein:vir:95 261 EADIRARILAEESGRRS 277 (693) T ss_pred cchhhHHHHHHHHHHHH Confidence 000111111111 11 No 2 >protein:vir:79548 Length: 652 # NCBI annotation: putative protease/scaffold protein # Family: family:all:62 # ACLAME annotation(s): go:0008236 - serine-type peptidase activity; phi:0000017 - phage prohead/capsid assembly # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272518;genbank:gi:148609387;genbank:GeneID:5204384 Probab=100.00 E-value=1.4e-51 Score=299.31 Aligned_cols=238 Identities=35% Similarity=0.588 Sum_probs=183.2 Q ss_pred CccCCCCcEEEEEEeeeecCccchhhhhHHHHHHHHhCC-CCCeEEEEEecCCCcHHHHHHHHHHHHhcCCeEEEEecch Q lcl|NC_013055. 1 MKASDDGTVATVYLYDVIVTDEWWGGVSAQSFVQALAGI-TADTIHLRINSPGGDVFAARAMETAIRGHSARVIAHVDGV 79 (251) Q Consensus 1 ~~a~~~~~va~I~i~G~I~~~~~~~~~~~~~i~~al~~~-~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~pv~~~v~g~ 79 (251) ||+..++. +.|+|||+|+ + +++++++|...|+.. +.+.|.|+||||||+|+++.+||++||+++.+|+++|+|+ T Consensus 1 ~~a~~~~~-aei~iy~~Ig---~-w~vta~~~~~~L~~l~~~~~I~i~INSpGG~V~~G~aIyn~lk~~~~~v~~~i~G~ 75 (652) T protein:vir:79 1 MQAGHQSD-ADIYIYDEIG---F-WGVTAKQFISDLNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGV 75 (652) T ss_pred CCCCCCCC-ceEEEEeecc---c-ccCCHHHHHHHHHhcCCCceEEEEEeCCCCChhHHHHHHHHHhhcCCCeEEEEeeh Confidence 88887776 5999999995 2 357888888888654 4478999999999999999999999999999999999999 Q ss_pred hhhHHHHHHhcccceEEeeceeeeeeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHcCCeeeCH Q lcl|NC_013055. 80 AASAASFVMLAADEVEITDGAFVMIHNAWTFAMGNADDLRESAKLLDAVDASLVRTYAKETGQSEDDISAWMAAETWMSS 159 (251) Q Consensus 80 aaS~a~~ia~a~~~~~~~~~s~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~ta 159 (251) |||+|++|+++|+++.|++++.+|+|+|+++..|+.++++...+.|+++...+..+|++++|++.+++.++|++++|||+ T Consensus 76 AAS~ASvIa~ag~~~~m~~~a~lMIH~p~~~~~G~a~dl~~~a~~L~~~~~~i~~~Ya~ktG~~~e~i~~~m~~etwlta 155 (652) T protein:vir:79 76 AASMASVIAMVGNPVIMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSG 155 (652) T ss_pred hhhHHHHHHhcCCeEEcCCCceEEEEccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhhhcCCCH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhccchhcccCcHHHHHH-HHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhhhhcccccccchhhHHHHHH Q lcl|NC_013055. 160 DEAVQRGFADRLAGAGADAQA-SAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPDSKPAEPAPPPQASAAAPDM 238 (251) Q Consensus 160 ~eA~~~GliD~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (251) +||+++||+|+|......... ....+..+++.|+.+.....+............|.... .+.++.....+. T Consensus 156 ~EA~e~Gf~D~i~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~v~d~EPa~~~--------~pvqAaAP~~De 227 (652) T protein:vir:79 156 AECLAQGFADQVTPAVKAMACIQSKRTEEFKKMPDSIRNMITPPRNSAPRVQDDEPAASR--------TPVQAAAPVVDE 227 (652) T ss_pred HHHHhcCCcccccchhhhhhhhhhhhhhhhhhhHHHHHHHhccccccccccccccccccc--------ccccccCCcCch Confidence 999999999999766554443 24456677888887765543322211111111111111 111111111122 Q ss_pred HHHHHHHHHHHhC Q lcl|NC_013055. 239 DAMRRRLELAQRS 251 (251) Q Consensus 239 ~~~~~~~~~~~~~ 251 (251) .++++++..++|. T Consensus 228 ~airAq~~aeera 240 (652) T protein:vir:79 228 NSIRAQVLAEQKA 240 (652) T ss_pred hHHHHHHHHHHHH Confidence 2333332222222 No 3 >protein:vir:96125 Length: 140 # NCBI annotation: ORF038 # Family: family:all:296 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240084;genbank:gi:66395765;genbank:GeneID:5133106 Probab=1.35 E-value=20 Score=13.45 Aligned_cols=90 Identities=7% Similarity=0.029 Sum_probs=31.7 Q ss_pred eeeCHHHHHhccchhcccCcHHHHHHHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhhhhcccccccchhhHH Q lcl|NC_013055. 155 TWMSSDEAVQRGFADRLAGAGADAQASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPDSKPAEPAPPPQASAA 234 (251) Q Consensus 155 ~~~ta~eA~~~GliD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (251) .||++.-|+..-+...+... .++...... ..|+..|... +.+-.-.......+..........-.-+...-.. T Consensus 1 ~~msa~~aLq~Ai~~~L~ad-~~l~alvgg-rVyD~~P~~~-----~~PYV~lG~~~~~~~~~~~~~g~~~~~tl~Vws~ 73 (140) T protein:vir:96 1 MWVTAEPLLYNKIMNNLIEN-PITDKLVGG-RVFDCVQKDV-----VYPYIVVGESNVTESERSPGMREIIAITFHVYSQ 73 (140) T ss_pred CccchhHHHHHHHHHHhccC-hhHHhhcCc-ccccCCccCC-----CCCEEEeCCceeeecCCCcccceEEEEEEEEEEc Confidence 89999999999999988653 333333322 4566555321 1111111111111111000000000000000000 Q ss_pred HHHHHHHHHHHHHHHhC Q lcl|NC_013055. 235 APDMDAMRRRLELAQRS 251 (251) Q Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (251) .....+.+..++....+ T Consensus 74 ~~g~~ea~~ia~ai~~a 90 (140) T protein:vir:96 74 YENGAEARELLKYLNYA 90 (140) T ss_pred CCCHHHHHHHHHHHHHH Confidence 00111122222222222 No 4 >protein:vir:4339 Length: 395 # NCBI annotation: major head protein # Family: family:all:585 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061502;genbank:gi:9635591;genbank:GeneID:1262860 Probab=1.14 E-value=57 Score=10.93 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=6.0 Q ss_pred eCHHHHHhccchhcccCcHHHHHHHHHhh----hhhhhhHHHHHhhccchhhHhhccccc---chhhhhhhhcccccccc Q lcl|NC_013055. 157 MSSDEAVQRGFADRLAGAGADAQASAWNL----SAYDRAPNAAHAQSSPRGPVAFAPPGS---APAPVPDSKPAEPAPPP 229 (251) Q Consensus 157 ~ta~eA~~~GliD~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 229 (251) |+-.+..=.-|-.++....+.+....... ........................... ................. T Consensus 1 m~~~~k~l~el~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (395) T protein:vir:43 1 MSDFEKQIGELNASLKQVGDQIKSQAEQVNTQIANFGEMNKETRAKVDELLTAQGELQARLSAAEQAMLANEKRDGGEEA 80 (395) T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccch Confidence 22111100000000000000000000000 000000000000000000000000000 00000000000000000 Q ss_pred hhhHHH--HHHHHHHHHHHHHHhC Q lcl|NC_013055. 230 QASAAA--PDMDAMRRRLELAQRS 251 (251) Q Consensus 230 ~~~~~~--~~~~~~~~~~~~~~~~ 251 (251) ...... ......+.......+. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ 104 (395) T protein:vir:43 81 PKTAGQMVAESLKEQGVTSSLRGS 104 (395) T ss_pred hhhHHHHHHHHHHHHHHHHHhhhh Confidence 000000 0000000000000000 No 5 >protein:vir:100135 Length: 418 # NCBI annotation: gp5 # Family: family:all:585 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945035;genbank:gi:38707895;genbank:GeneID:2744182 Probab=0.57 E-value=1.1e+02 Score=9.37 Aligned_cols=83 Identities=6% Similarity=-0.020 Sum_probs=8.0 Q ss_pred HhcCCCHHHHHHHHcCCeeeCHHHHHhccchhcccCcHHHHHHHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhh Q lcl|NC_013055. 138 KETGQSEDDISAWMAAETWMSSDEAVQRGFADRLAGAGADAQASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPV 217 (251) Q Consensus 138 ~~~g~~~~~~~~~~~~~~~~ta~eA~~~GliD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (251) .++.....++.+.-.. -+++......+ ...+......-..+...... ... .. . . . T Consensus 1 ~~~~~~~~~~~~~~~~--------------~~el~~~~~e~---~~~l~~~~~e~~~~~e~~~~--e~~-~~--~--~-~ 55 (418) T protein:vir:10 1 MSHMNEPRQFGRKSGG--------------DSHPEQVLETV---TKELKRIGDEVKSAGEKALA--EAK-RA--G--D-L 55 (418) T ss_pred CCCchhHHHHHHHhcc--------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHH-hh--h--h-h Confidence 1111111122111111 11111110000 00000000000000000000 000 00 0 0 0 Q ss_pred hhhhcccccccchhhHHHHHHHHHHHHHHHHHhC Q lcl|NC_013055. 218 PDSKPAEPAPPPQASAAAPDMDAMRRRLELAQRS 251 (251) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (251) .............+.+.+..+.+.+++. T Consensus 56 ------~~e~~~~~~~l~~~~~~l~~~~~~~e~~ 83 (418) T protein:vir:10 56 ------GVETKATVDELLIKQGELQARLLEAEQK 83 (418) T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000000000001111111111111111 No 6 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=0.48 E-value=1.3e+02 Score=8.99 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=28.1 Q ss_pred CCHHHHHHHHcCCeeeCHHHHHhccchhcccCcH---HHHHHHHHhhhhhhhhHHHHHhhc--cchhhHhhc Q lcl|NC_013055. 142 QSEDDISAWMAAETWMSSDEAVQRGFADRLAGAG---ADAQASAWNLSAYDRAPNAAHAQS--SPRGPVAFA 208 (251) Q Consensus 142 ~~~~~~~~~~~~~~~~ta~eA~~~GliD~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 208 (251) ++.+++.++++. |+-|+.|+-.|=-=.|++-. +.+..-.+....+.+.-..+.... .+....... T Consensus 1 mt~e~~~~ml~~--yleAE~avl~GkS~ti~gr~lTre~LseIRkgr~~We~rl~~~~~~r~g~~~~kvarF 70 (70) T protein:vir:79 1 MNQNDIEAMIQR--YTEAEMAVLDGKSVTFNGQQMTMENLSEIRQGRQEWERRLAALITRRRGHPGYRLARF 70 (70) T ss_pred CCHHHHHHHHHH--HHHHHHHHHcCCceeeCCeeecccCHHHHHHHHHHHHHHHHHHhcccCCCCCcccccC Confidence 888888888865 88888888877433333321 112222222222222222222110 111111000 No 7 >protein:vir:107096 Length: 145 # NCBI annotation: conserved phage protein # Family: family:all:296 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950611;genbank:gi:119953691;genbank:GeneID:4643105 Probab=0.47 E-value=86 Score=9.91 Aligned_cols=90 Identities=9% Similarity=0.064 Sum_probs=30.4 Q ss_pred eeeCHHHHHhccchhcccCcHHHHHHHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhhhhcccccccchhhHH Q lcl|NC_013055. 155 TWMSSDEAVQRGFADRLAGAGADAQASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPDSKPAEPAPPPQASAA 234 (251) Q Consensus 155 ~~~ta~eA~~~GliD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (251) .|++++.|+..-+...+... .++...... ..|+..|... +.+-.-.......+..........-.-+...-.. T Consensus 1 Ms~s~~~aLq~Ai~~~L~ad-~al~alvg~-rVyD~~P~~a-----~~PyV~lG~~~~~~~~~~~~~g~~~~~ti~Vws~ 73 (145) T protein:vir:10 1 MWVSVERYLFNKIYNKLKSN-PIIKKQLGG-RVFDCVQKDA-----VYPYIVVGETNVTNKETTTSMFEDVGVTLHVYSQ 73 (145) T ss_pred CchhHHHHHHHHHHHHhhcC-hhHHHhhcc-ccccCCccCC-----CCCEEEeCcceeeecCCCcccceEEEEEEEEEEc Confidence 67789999999988887543 333333221 3555554311 1111111111111111100000000000000000 Q ss_pred HHHHHHHHHHHHHHHhC Q lcl|NC_013055. 235 APDMDAMRRRLELAQRS 251 (251) Q Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (251) .....+.+..+.....+ T Consensus 74 ~~g~~ea~~ia~av~~a 90 (145) T protein:vir:10 74 ARNRDEASQIIQYLGFV 90 (145) T ss_pred CCCHHHHHHHHHHHHHH Confidence 00111222223333333 No 8 >protein:vir:105337 Length: 145 # NCBI annotation: conserved phage protein # Family: family:all:296 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950674;genbank:gi:119967844;genbank:GeneID:4643216 Probab=0.46 E-value=88 Score=9.86 Aligned_cols=90 Identities=9% Similarity=0.063 Sum_probs=30.4 Q ss_pred eeeCHHHHHhccchhcccCcHHHHHHHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhhhhcccccccchhhHH Q lcl|NC_013055. 155 TWMSSDEAVQRGFADRLAGAGADAQASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPDSKPAEPAPPPQASAA 234 (251) Q Consensus 155 ~~~ta~eA~~~GliD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (251) .|++++.|+..-+...+... .++...... ..|+..|... +.+-.-.......+..........-.-+...-.. T Consensus 1 Ms~s~~~aLq~Ai~~~L~ad-~al~alvg~-rVyD~~P~~a-----~~PyV~lG~~~~~~~~~~~~~g~~~~~ti~Vws~ 73 (145) T protein:vir:10 1 MWVSVERYLFNKIYNKLKSN-PIVSKQLGG-RVFDCVQKDA-----VYPYIVVGETNVTNKETTTSMFEDVGVTLHVYSQ 73 (145) T ss_pred CchhHHHHHHHHHHHHhhcC-hhHHHhhcc-ccccCCccCC-----CCCEEEeCcceeeecCCCcccceEEEEEEEEEEc Confidence 67789999999988887553 333333221 3555554311 1111111111111111100000000000000000 Q ss_pred HHHHHHHHHHHHHHHhC Q lcl|NC_013055. 235 APDMDAMRRRLELAQRS 251 (251) Q Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (251) .....+.+..+.....+ T Consensus 74 ~~g~~ea~~ia~av~~a 90 (145) T protein:vir:10 74 ARNRDEASQIIQYLGFV 90 (145) T ss_pred CCCHHHHHHHHHHHHHH Confidence 00111222223333333 No 9 >protein:vir:4700 Length: 415 # NCBI annotation: phi PVL ORF 7 homologue # Family: family:all:21 # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061632;genbank:gi:9635719;genbank:GeneID:1262976 Probab=0.46 E-value=1.3e+02 Score=8.89 Aligned_cols=64 Identities=5% Similarity=0.033 Sum_probs=5.7 Q ss_pred ccCcHHHHHHHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHh Q lcl|NC_013055. 171 LAGAGADAQASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPDSKPAEPAPPPQASAAAPDMDAMRRRLELAQR 250 (251) Q Consensus 171 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251) +-.. .++ .+.+..++..-...... .... . ......... ...........+.+.++...+..+. T Consensus 1 mk~~-~em---~~~l~el~~~~~~~~~e---~~~~---~-~~~~~e~~~------~~~~ev~~l~~~i~~~~~~~~~~~~ 63 (415) T protein:vir:47 1 MKTK-EEL---QSEISDIKRQIDLKVKY---ATRA---L-NNDELEKAE------KLEQEITDLRSQIQEKQEELDKLKE 63 (415) T ss_pred CchH-HHH---HHHHHHHHHHHHHHHHH---HHHH---h-chhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1111 111 11111110000000000 0000 0 000000000 0000000111111111111111111 Q ss_pred C Q lcl|NC_013055. 251 S 251 (251) Q Consensus 251 ~ 251 (251) . T Consensus 64 ~ 64 (415) T protein:vir:47 64 K 64 (415) T ss_pred H Confidence 0 No 10 >protein:vir:4600 Length: 415 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058445;genbank:gi:9635171;genbank:GeneID:1262708 Probab=0.46 E-value=1.3e+02 Score=8.89 Aligned_cols=64 Identities=5% Similarity=0.033 Sum_probs=5.7 Q ss_pred ccCcHHHHHHHHHhhhhhhhhHHHHHhhccchhhHhhcccccchhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHh Q lcl|NC_013055. 171 LAGAGADAQASAWNLSAYDRAPNAAHAQSSPRGPVAFAPPGSAPAPVPDSKPAEPAPPPQASAAAPDMDAMRRRLELAQR 250 (251) Q Consensus 171 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251) +-.. .++ .+.+..++..-...... .... . ......... ...........+.+.++...+..+. T Consensus 1 mk~~-~em---~~~l~el~~~~~~~~~e---~~~~---~-~~~~~e~~~------~~~~ev~~l~~~i~~~~~~~~~~~~ 63 (415) T protein:vir:46 1 MKTK-EEL---QSEISDIKRQIDLKVKY---ATRA---L-NNDELEKAE------KLEQEITDLRSQIQEKQEELDKLKE 63 (415) T ss_pred CchH-HHH---HHHHHHHHHHHHHHHHH---HHHH---h-chhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1111 111 11111110000000000 0000 0 000000000 0000000111111111111111111 Q ss_pred C Q lcl|NC_013055. 251 S 251 (251) Q Consensus 251 ~ 251 (251) . T Consensus 64 ~ 64 (415) T protein:vir:46 64 K 64 (415) T ss_pred H Confidence 0 Done!