BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_013055.1_cdsid_YP_003090186.1 [gene=BuPhKS9_gp29] [protein=major tail subunit gp10] [protein_id=YP_003090186.1] [location=19429..19893] (154 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|8001|lcl|protein:vir:100241 Length: 154 # NCBI annotation: gp... 248 3e-68 gi|13942|lcl|protein:vir:1439 Length: 152 # NCBI annotation: put... 233 6e-64 gi|8571|lcl|protein:vir:100083 Length: 152 # NCBI annotation: gp... 233 8e-64 gi|12836|lcl|protein:vir:80349 Length: 198 # NCBI annotation: gp... 229 1e-62 gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: majo... 100 1e-23 gi|839|lcl|protein:vir:93600 Length: 281 # NCBI annotation: puta... 84 6e-19 gi|17992|lcl|protein:vir:4349 Length: 173 # NCBI annotation: Orf... 27 0.13 gi|6897|lcl|protein:vir:106581 Length: 159 # NCBI annotation: pu... 26 0.25 gi|16418|lcl|protein:vir:1893 Length: 166 # NCBI annotation: maj... 25 0.51 gi|11632|lcl|protein:vir:78892 Length: 228 # NCBI annotation: Ts... 23 1.6 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 23 2.4 gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hyp... 22 3.0 gi|12298|lcl|protein:vir:79536 Length: 247 # NCBI annotation: pu... 22 5.4 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 21 7.5 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 21 7.5 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 21 7.6 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 21 7.6 >gi|8001|lcl|protein:vir:100241 Length: 154 # NCBI annotation: gp70 # Family: family:all:628 # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355406;genbank:gi:77864696;genbank:GeneID :3725963 Length = 154 Score = 248 bits (633), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 122/146 (83%), Positives = 131/146 (89%) Query: 1 MAEKSKRIKAQGTKVEISKTVSADLDDNTLVFVDLGTTTKTINWQGGQSAEIDATTLESE 60 MAEKSKR KAQGTKVE+SKTVS DLDDNTLVFVDL TT KTI WQGGQS+EIDATTL SE Sbjct: 1 MAEKSKRTKAQGTKVEVSKTVSTDLDDNTLVFVDLNTTGKTIQWQGGQSSEIDATTLASE 60 Query: 61 EKESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDKSQFLFIGMVRQ 120 EKE ELGL DPGEFSVDGNYSSDD GQ +LR AR +G+K+VFRVTF D+SQFLF+GMVRQ Sbjct: 61 EKEYELGLPDPGEFSVDGNYSSDDEGQSLLRTARASGEKHVFRVTFADQSQFLFVGMVRQ 120 Query: 121 YTWSAGVDGIVTSTYSVRVSGSPKEV 146 YTWSA VDGIVTSTYSVRVSG+PK V Sbjct: 121 YTWSAAVDGIVTSTYSVRVSGAPKLV 146 >gi|13942|lcl|protein:vir:1439 Length: 152 # NCBI annotation: putative major tail subunit protein # Family: family:all:628 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536368;genbank:gi:17975173;genbank:GeneID :929142 Length = 152 Score = 233 bits (595), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 125/149 (83%) Query: 2 AEKSKRIKAQGTKVEISKTVSADLDDNTLVFVDLGTTTKTINWQGGQSAEIDATTLESEE 61 AE+SKR KAQGTKVE+SK S DLD LVFVDL T K I WQGGQS EIDATT S+E Sbjct: 3 AERSKRTKAQGTKVEVSKMASTDLDAADLVFVDLSATGKQIQWQGGQSEEIDATTFASDE 62 Query: 62 KESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDKSQFLFIGMVRQY 121 KESELGL DPGEFSVDGNY S+D GQ ILR AR TG+KYVFRVTF DKSQFLF+GMVRQY Sbjct: 63 KESELGLPDPGEFSVDGNYQSNDEGQNILRAARATGEKYVFRVTFADKSQFLFVGMVRQY 122 Query: 122 TWSAGVDGIVTSTYSVRVSGSPKEVPPPA 150 TW+A V+G++++TYSVRVSG+PK VPPPA Sbjct: 123 TWAASVNGLISATYSVRVSGAPKLVPPPA 151 >gi|8571|lcl|protein:vir:100083 Length: 152 # NCBI annotation: gp11 # Family: family:all:628 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945041;genbank:gi:38707901;genbank:GeneID :2744130 Length = 152 Score = 233 bits (594), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 124/149 (83%) Query: 2 AEKSKRIKAQGTKVEISKTVSADLDDNTLVFVDLGTTTKTINWQGGQSAEIDATTLESEE 61 AEKSKR KAQGTKVE+SK S DLD L FVDL T K I WQGGQS EIDATT S+E Sbjct: 3 AEKSKRTKAQGTKVEVSKVASTDLDAADLAFVDLSATGKQIQWQGGQSEEIDATTFASDE 62 Query: 62 KESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDKSQFLFIGMVRQY 121 KESELGL DPGEFSVDGNY S+D GQ ILR AR TG+KYVFRVTF DKSQFLF+GMVRQY Sbjct: 63 KESELGLPDPGEFSVDGNYQSNDEGQNILRAARATGEKYVFRVTFADKSQFLFVGMVRQY 122 Query: 122 TWSAGVDGIVTSTYSVRVSGSPKEVPPPA 150 TW+A V+G++++TYSVRVSG+PK VPPPA Sbjct: 123 TWAASVNGLISATYSVRVSGAPKLVPPPA 151 >gi|12836|lcl|protein:vir:80349 Length: 198 # NCBI annotation: gp12 # Family: family:all:628 # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111091;genbank:gi:134288619;genbank:Ge neID:4960596 Length = 198 Score = 229 bits (584), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 109/150 (72%), Positives = 124/150 (82%) Query: 1 MAEKSKRIKAQGTKVEISKTVSADLDDNTLVFVDLGTTTKTINWQGGQSAEIDATTLESE 60 MAE+SKRI++QGTKVE+SK S DLD N + FVDL TTTK I WQGGQS EIDATT SE Sbjct: 48 MAERSKRIRSQGTKVEVSKVPSYDLDANDITFVDLNTTTKQIQWQGGQSEEIDATTFASE 107 Query: 61 EKESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDKSQFLFIGMVRQ 120 +KESELGL DPGEFSV GNYSSDD GQLILR A T K+V RVTF DKSQFL IGMVRQ Sbjct: 108 QKESELGLGDPGEFSVQGNYSSDDEGQLILRAAHSTKAKHVLRVTFSDKSQFLMIGMVRQ 167 Query: 121 YTWSAGVDGIVTSTYSVRVSGSPKEVPPPA 150 Y+WS GV+ I++S+YS+R+SG+PK VPPPA Sbjct: 168 YSWSGGVNAIISSSYSIRLSGAPKIVPPPA 197 >gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: major tail subunit # Family: family:all:628 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037706;genbank:gi:9634159;genbank:GeneID: 1262542 Length = 234 Score = 100 bits (248), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 1/138 (0%) Query: 9 KAQGTKVEISKTVSADLDDNTLVFVDLGTTTKTINWQGGQSAEIDATTLESEEKESELGL 68 K+Q TK+ IS S ++ F+DL T K I + GGQ +ID TTL S E+E+ GL Sbjct: 7 KSQLTKILISSLPSTKETMDSATFLDLSCTIKEIQFTGGQKQDIDVTTLCSTEQENINGL 66 Query: 69 ADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 P E S+ GN+ ++ A Q LR A Y F++ F + F F+ VRQ+TWS+G + Sbjct: 67 PSPSEISLSGNFYNNPA-QDALRDAYDNDTTYGFQIIFPSGNGFKFLAEVRQHTWSSGTN 125 Query: 129 GIVTSTYSVRVSGSPKEV 146 G+V +T+S+R+ G P + Sbjct: 126 GVVAATFSLRLKGKPVPI 143 >gi|839|lcl|protein:vir:93600 Length: 281 # NCBI annotation: putative major tail subunit # Family: family:all:628 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449301;genbank:gi:157166049;goa:Q6H9U0 ;interpro:IPR007110;interpro:IPR013098;uniprot:Q6H9U0;ge nbank:GeneID:5580422 Length = 281 Score = 84.3 bits (207), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Query: 9 KAQGTKVEISKTVSADLDDNTLVFVDLGTTTKTINWQGGQSAEIDATTLESEEKESELGL 68 ++Q T+V IS + ++ L T K + + GQ +ID TTL S E+E+ GL Sbjct: 50 RSQLTQVMISSAPATAETMEKAEYLRLDCTIKEVQFTAGQKQDIDVTTLCSTEQENINGL 109 Query: 69 ADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 E S+ GN+ + A Q LR A Y F+V F F F+ VRQ+TWS+G + Sbjct: 110 GASSEISMSGNFYLNQA-QNALRDAYDNDTVYAFKVQFPSGKGFKFLAEVRQHTWSSGTN 168 Query: 129 GIVTSTYSVRVSGSP 143 G+V +T+S+R+ G P Sbjct: 169 GVVAATFSLRLKGKP 183 >gi|17992|lcl|protein:vir:4349 Length: 173 # NCBI annotation: Orf15 # Family: family:all:778 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061512;genbank:gi:9635608;genbank:GeneID: 1262875 Length = 173 Score = 26.9 bits (58), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 27/129 (20%) Query: 46 GGQSAEIDATTLESEEKESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKY----V 101 G + +I+ T L + GL PG+ S+ N ++ + L + + D+ Sbjct: 42 GNPADQIETTCLSETVRRYLRGLRTPGQASLTLNADPRNSSHIRLYQLSESDDQIDQDIA 101 Query: 102 FRVTFRD-----------------------KSQFLFIGMVRQYTWSAGVDGIVTSTYSVR 138 F V + D ++ F+F G V + + + +VTST +++ Sbjct: 102 FAVGWSDGIGVAPTEAQDSNGDWDFVLPPTRTWFVFRGYVSDFPFDFAANAVVTSTATIQ 161 Query: 139 VSGSPKEVP 147 SG +P Sbjct: 162 RSGGSAWIP 170 >gi|6897|lcl|protein:vir:106581 Length: 159 # NCBI annotation: putative major tail protein # Family: family:all:6477 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958590;genbank:gi:41179249;genbank:GeneID :2717117 Length = 159 Score = 25.8 bits (55), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Query: 40 KTINWQGGQSAEIDATTLESEEKESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDK 99 KTI GG + +ID TTL + ++ G+ + Y G + GD+ Sbjct: 49 KTIPELGGDTEKIDVTTLADDRRKQIEGIQNASNVQFQAVYK----GASFAKALAQAGDR 104 Query: 100 --YVFRVTFRDKSQFLFIGMVRQYTWSAGVDGIVTSTYSVRVSGSP 143 Y ++VT+ D G + V+G + T ++ VS P Sbjct: 105 KQYQWKVTYPDGMTATMKGSYNIKFGAVSVNGALGYTITITVSDGP 150 >gi|16418|lcl|protein:vir:1893 Length: 166 # NCBI annotation: major tail subunit # Family: family:all:778 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037673;genbank:gi:9634131;genbank:GeneID: 1262518 Length = 166 Score = 25.0 bits (53), Expect = 0.51, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 24/44 (54%) Query: 109 KSQFLFIGMVRQYTWSAGVDGIVTSTYSVRVSGSPKEVPPPAVP 152 ++ F+F G V + + + +V+++ S++ SGS VP P Sbjct: 123 RTWFVFKGYVSDFPFDFSANTVVSTSASIQRSGSAVWVPKVVTP 166 >gi|11632|lcl|protein:vir:78892 Length: 228 # NCBI annotation: Tsh # Family: family:all:47 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468852;genbank:gi:157325426;genbank:Ge neID:5601889 Length = 228 Score = 23.1 bits (48), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 73 EFSVDGNYSSDDAGQLILRRA---RGTGDKYVFRVTFRDKSQFLFIGMVRQYTW-SAGVD 128 E +DG Y+ D GQ LR G+ + V F S++ G + + G + Sbjct: 60 ELGLDGKYNESDPGQNELRETWDKVGSEAEKTIVVKFPAGSKYEITGPIGINDFGGGGAN 119 Query: 129 GIVTSTYSVRVSGSPKEVPPPAV 151 I + + + +G+P P P + Sbjct: 120 DIGSFSATQNSNGTPVFTPAPTI 142 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 22.7 bits (47), Expect = 2.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 97 GDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 G Y + +TF +SQ+ + +Q W+ VD Sbjct: 370 GKTYSYTLTFSVRSQYEQLDTEQQELWTEFVD 401 >gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795472;genbank:gi:28876219;genbank:GeneID :1257763 Length = 203 Score = 22.3 bits (46), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 44 WQGGQSAEIDATTLESEEKESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKY 100 W G + + +E++ KE G DP SV GN+ + ++ RG D + Sbjct: 119 WVGLLKGKFNLPGMEAQTKE---GAPDPKPDSVTGNFVARGKDGDVILIGRGGADGF 172 >gi|12298|lcl|protein:vir:79536 Length: 247 # NCBI annotation: putative major tail subunit # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272523;genbank:gi:148609392;genbank:Ge neID:5204372 Length = 247 Score = 21.6 bits (44), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 53 DATTLESEE---KESELGLADPGEFSVDGNYSSDDAGQLILRRARGTGDKYVFRVTFRDK 109 D T L+ E+ K + G G+ S + D+GQ L + +G+ FR+ + + Sbjct: 56 DDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNG 115 Query: 110 SQFLFIGMVRQYTWSAGVDGIVTSTYSVRVSGSP 143 + +F G + + ++T T + G P Sbjct: 116 TVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRP 149 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 20.8 bits (42), Expect = 7.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 97 GDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 G Y +TF +SQ+ + +Q W+ VD Sbjct: 370 GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVD 401 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 20.8 bits (42), Expect = 7.5, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 97 GDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 G Y +TF +SQ+ + +Q W+ VD Sbjct: 370 GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVD 401 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 20.8 bits (42), Expect = 7.6, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 97 GDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 G Y +TF +SQ+ + +Q W+ VD Sbjct: 370 GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVD 401 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 20.8 bits (42), Expect = 7.6, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 97 GDKYVFRVTFRDKSQFLFIGMVRQYTWSAGVD 128 G Y +TF +SQ+ + +Q W+ VD Sbjct: 370 GKTYSHTLTFSVRSQYEQLDTEQQELWTEFVD 401 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.130 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,392 Number of Sequences: 514 Number of extensions: 3176 Number of successful extensions: 21 Number of sequences better than 100.0: 19 Number of HSP's better than 100.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19 length of query: 154 length of database: 206,069 effective HSP length: 65 effective length of query: 89 effective length of database: 172,659 effective search space: 15366651 effective search space used: 15366651 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 33 (17.3 bits)