Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lv-1 | Genbank acc : NC_011801

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|NC_011801.1_cdsid_YP_002455793.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_011801.1_cdsid_YP_002455792.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_011801.1_cdsid_YP_002455791.1	Blast (e-value=1e-139)
MTP	8	lcl\|NC_011801.1_cdsid_YP_002455797.1	Blast (e-value=2e-31)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	5	lcl\|NC_011801.1_cdsid_YP_002455794.1	HHsearch (proba=100.00%)
Ne1	6	lcl\|NC_011801.1_cdsid_YP_002455795.1	HHsearch (proba=100.00%)
Tc1	7	lcl\|NC_011801.1_cdsid_YP_002455796.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1084 protein:vir:81100 protein:vir:79987	bIL309 tp310-1 tp310-3	35 % 20 % 20 %
Portal	protein:vir:1082 protein:vir:100187 protein:vir:100882	bIL309 phi AT3 Lc-Nu	33 % 29 % 29 %
TermL	protein:vir:3842 protein:vir:4950 protein:vir:3986	phi adh Sfi19 BK5-T	43 % 42 % 41 %
MTP	protein:vir:3850 protein:vir:1030 protein:vir:3996	phi adh bIL286 BK5-T	34 % 29 % 28 %
Hc1	protein:vir:1086 protein:vir:4832 protein:vir:100226	bIL309 7201 phi AT3	32 % 28 % 27 %
Ne1	protein:vir:3848 protein:vir:4956 protein:vir:4859	phi adh Sfi19 DT1	40 % 28 % 28 %
Tc1	protein:vir:100200 protein:vir:100888 protein:vir:3995	phi AT3 Lc-Nu BK5-T	34 % 33 % 29 %