Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : bIL309 | Genbank acc : NC_002668 | Aclame index mge :21

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	43	lcl\|Aclame:protein:vir:1084\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	41	lcl\|Aclame:protein:vir:1082\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	39	lcl\|Aclame:protein:vir:1080\|NCBI_annot:terminase\|genbank:acc:NP_076734;genbank:gi:13095844;genbank:G	Blast (e-value=0)
MTP	48	lcl\|Aclame:protein:vir:1089\|NCBI_annot:Orf48\|genbank:acc:NP_076743;genbank:gi:13095853;genbank:GeneI	Blast (e-value=1e-117)
Sheath	NOT FOUND
Ad1	44	lcl\|Aclame:protein:vir:1085\|NCBI_annot:Orf44\|genbank:acc:NP_076739;genbank:gi:13095849;genbank:GeneI	HHsearch (proba=100.00%)
Hc1	45	lcl\|Aclame:protein:vir:1086\|NCBI_annot:Orf45\|genbank:acc:NP_076740;genbank:gi:13095850;genbank:GeneI	HHsearch (proba=100.00%)
Ne1	46	lcl\|Aclame:protein:vir:1087\|NCBI_annot:Orf46\|genbank:acc:NP_076741;genbank:gi:13095851;genbank:GeneI	HHsearch (proba=100.00%)
Tc1	47	lcl\|Aclame:protein:vir:1088\|NCBI_annot:Orf47\|genbank:acc:NP_076742;genbank:gi:13095852;genbank:GeneI	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1084 protein:vir:100172 protein:vir:100884	bIL309 phi AT3 Lc-Nu	100 % 26 % 26 %
Portal	protein:vir:1082 protein:vir:100187 protein:vir:100882	bIL309 phi AT3 Lc-Nu	100 % 30 % 30 %
TermL	protein:vir:1080 protein:vir:4852 protein:vir:7405	bIL309 DT1 P335	100 % 40 % 38 %
MTP	protein:vir:1089 protein:vir:100889 protein:vir:4835	bIL309 Lc-Nu 7201	100 % 47 % 47 %
Ad1	protein:vir:1085 protein:vir:100211 protein:vir:100885	bIL309 phi AT3 Lc-Nu	100 % 27 % 26 %
Hc1	protein:vir:1086 protein:vir:100226 protein:vir:100886	bIL309 phi AT3 Lc-Nu	100 % 45 % 45 %
Ne1	protein:vir:1087 protein:vir:3994 protein:vir:7412	bIL309 BK5-T P335	100 % 48 % 48 %
Tc1	protein:vir:1088 protein:vir:3995 protein:vir:7413	bIL309 BK5-T P335	100 % 35 % 35 %