Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi adh | Genbank acc : NC_000896 | Aclame index mge :322

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	43	lcl\|Aclame:protein:vir:3845\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	41	lcl\|Aclame:protein:vir:3843\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	40	lcl\|Aclame:protein:vir:3842\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	48	lcl\|Aclame:protein:vir:3850\|NCBI_annot:major	Blast (e-value=1e-142)
Sheath	NOT FOUND
Ad1	44	lcl\|Aclame:protein:vir:3846\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	45	lcl\|Aclame:protein:vir:3847\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	46	lcl\|Aclame:protein:vir:3848\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	47	lcl\|Aclame:protein:vir:3849\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3845 protein:vir:4856 protein:vir:4997	phi adh DT1 Sfi21	100 % 55 % 47 %
Portal	protein:vir:3843 protein:vir:3989 protein:vir:7407	phi adh BK5-T P335	100 % 48 % 48 %
TermL	protein:vir:3842 protein:vir:4950 protein:vir:4993	phi adh Sfi19 Sfi21	100 % 61 % 60 %
MTP	protein:vir:3850 protein:vir:100889 protein:vir:100188	phi adh Lc-Nu phi AT3	99 % 27 % 22 %
Ad1	protein:vir:3846 protein:vir:4857 protein:vir:4954	phi adh DT1 Sfi19	100 % 29 % 29 %
Hc1	protein:vir:3847 protein:vir:4832 protein:vir:4955	phi adh 7201 Sfi19	100 % 27 % 26 %
Ne1	protein:vir:3848 protein:vir:100223 protein:vir:100887	phi adh phi AT3 Lc-Nu	100 % 30 % 29 %
Tc1	protein:vir:3849 protein:vir:100200 protein:vir:100888	phi adh phi AT3 Lc-Nu	100 % 24 % 24 %