Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : bIL286 | Genbank acc : NC_002667 | Aclame index mge :20

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	45	lcl\|Aclame:protein:vir:1025\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	43	lcl\|Aclame:protein:vir:1023\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	41	lcl\|Aclame:protein:vir:1021\|NCBI_annot:terminase\|genbank:acc:NP_076675;genbank:gi:13095784;genbank:G	Blast (e-value=0)
MTP	50	lcl\|Aclame:protein:vir:1030\|NCBI_annot:Orf50\|genbank:acc:NP_076684;genbank:gi:13095793;genbank:GeneI	Blast (e-value=1e-111)
Sheath	NOT FOUND
Ad1	46	lcl\|Aclame:protein:vir:1026\|NCBI_annot:Orf46\|genbank:acc:NP_076680;genbank:gi:13095789;genbank:GeneI	HHsearch (proba=100.00%)
Hc1	47	lcl\|Aclame:protein:vir:1027\|NCBI_annot:Orf47\|genbank:acc:NP_076681;genbank:gi:13095790;genbank:GeneI	HHsearch (proba=100.00%)
Ne1	48	lcl\|Aclame:protein:vir:1028\|NCBI_annot:Orf48\|genbank:acc:NP_076682;genbank:gi:13095791;genbank:GeneI	HHsearch (proba=100.00%)
Tc1	49	lcl\|Aclame:protein:vir:1029\|NCBI_annot:Orf49\|genbank:acc:NP_076683;genbank:gi:13095792;genbank:GeneI	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1025 protein:vir:7409 protein:vir:3991	bIL286 P335 BK5-T	100 % 96 % 95 %
Portal	protein:vir:3989 protein:vir:7407 protein:vir:1023	BK5-T P335 bIL286	100 % 100 % 100 %
TermL	protein:vir:1021 protein:vir:3986 protein:vir:7405	bIL286 BK5-T P335	100 % 99 % 73 %
MTP	protein:vir:1030 protein:vir:7414 protein:vir:3996	bIL286 P335 BK5-T	100 % 99 % 98 %
Ad1	protein:vir:1026 protein:vir:7410 protein:vir:3992	bIL286 P335 BK5-T	100 % 98 % 96 %
Hc1	protein:vir:1027 protein:vir:7411 protein:vir:3993	bIL286 P335 BK5-T	100 % 97 % 95 %
Ne1	protein:vir:1028 protein:vir:3994 protein:vir:7412	bIL286 BK5-T P335	100 % 96 % 93 %
Tc1	protein:vir:1029 protein:vir:3995 protein:vir:7413	bIL286 BK5-T P335	100 % 98 % 98 %