Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Ramsey | Genbank acc : NC_011289

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 108

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_011289.1_cdsid_YP_002241794.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_011289.1_cdsid_YP_002241791.1	HHsearch (proba=100.00%)
TermL	3	lcl\|NC_011289.1_cdsid_YP_002241790.1	Blast (e-value=0)
MTP	12	lcl\|NC_011289.1_cdsid_YP_002241799.1	Blast (e-value=1e-160)
Sheath	NOT FOUND
Ad1	8	lcl\|NC_011289.1_cdsid_YP_002241795.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_011289.1_cdsid_YP_002241796.1	HHsearch (proba=100.00%)
Ne1	10	lcl\|NC_011289.1_cdsid_YP_002241797.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_011289.1_cdsid_YP_002241798.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2504 protein:vir:105905 protein:vir:94142	TM4 phiETA3 96	73 % 24 % 24 %
Portal	protein:vir:2500 protein:vir:98444 protein:vir:99072	TM4 VWB Wildcat	62 % 25 % 24 %
TermL	protein:vir:8183 protein:vir:2499 protein:vir:99915	Che9d TM4 Halo	77 % 33 % 32 %
MTP	protein:vir:102610 protein:vir:105827 protein:vir:7995	Llij PMC Che8	100 % 100 % 100 %
Ad1	protein:vir:2505 protein:vir:1640 protein:vir:94761	TM4 r1t phi LC3	45 % 27 % 26 %
Hc1	protein:vir:102607 protein:vir:105824 protein:vir:7992	Llij PMC Che8	96 % 96 % 96 %
Ne1	protein:vir:102608 protein:vir:105825 protein:vir:7993	Llij PMC Che8	96 % 96 % 96 %
Tc1	protein:vir:7994 protein:vir:102609 protein:vir:105826	Che8 Llij PMC	97 % 96 % 96 %