Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiPLPE | Genbank acc : NC_011142

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 84

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	29	lcl\|NC_011142.1_cdsid_YP_002128463.1	HHsearch (proba=100.00%)
Portal	19	lcl\|NC_011142.1_cdsid_YP_002128453.1	HHsearch (proba=100.00%)
TermL	18	lcl\|NC_011142.1_cdsid_YP_002128452.1	Blast (e-value=8e-74)
MTP	NOT FOUND
Sheath	46	lcl\|NC_011142.1_cdsid_YP_002128480.1	HHsearch (proba=100.00%)
Ad1	41	lcl\|NC_011142.1_cdsid_YP_002128475.1	HHsearch (proba=100.00%)
Hc1	43	lcl\|NC_011142.1_cdsid_YP_002128477.1	HHsearch (proba=99.24%)
Ne1	42	lcl\|NC_011142.1_cdsid_YP_002128476.1	HHsearch (proba=100.00%)
Tc1	44	lcl\|NC_011142.1_cdsid_YP_002128478.1	HHsearch (proba=97.76%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104342 protein:vir:103285 protein:vir:79642	RTP JK06 TLS	22 % 19 % 18 %
Portal	protein:vir:5249 protein:vir:79647 protein:vir:78589	Aaphi23 TLS BcepNY3	27 % 21 % 21 %
TermL	protein:vir:103223 protein:vir:5248 protein:vir:79648	JK06 Aaphi23 TLS	38 % 37 % 35 %
Sheath	protein:vir:5260 protein:vir:80052 protein:vir:95263	Aaphi23 B054 Felix 01	22 % 20 % 20 %
Ad1	protein:vir:5256 protein:vir:104344 protein:vir:107756	Aaphi23 RTP BcepB1A	25 % 22 % 20 %
Hc1	protein:vir:95261 protein:vir:5258 protein:vir:94034	Felix 01 Aaphi23 OP2	22 % 16 % 17 %
Ne1	protein:vir:5257 protein:vir:96105 protein:vir:107757	Aaphi23 F8 BcepB1A	32 % 26 % 25 %
Tc1	protein:vir:78612 protein:vir:106763 protein:vir:3637	BcepNY3 Bcep1 Bcep781	18 % 18 % 17 %