Query lcl|NC_011142.1_cdsid_YP_002128478.1 [gene=phiPLPE_44] [protein=hypothetical protein] [protein_id=YP_002128478.1] [location=25622..26176] Match_columns 184 No_of_seqs 8 out of 11 Neff 2.6 Searched_HMMs 1612 Date Thu Nov 7 13:38:29 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_44 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_44_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:78612 Length: 178 97.8 7.3E-07 4.5E-10 54.2 10.1 159 1-184 9-176 (178) 2 protein:vir:106763 Length: 178 97.7 9.5E-07 5.9E-10 53.6 9.7 160 1-184 9-176 (178) 3 protein:vir:3637 Length: 178 # 97.5 3.2E-06 2E-09 50.7 10.4 160 1-184 9-176 (178) 4 protein:vir:101569 Length: 178 97.4 4.3E-06 2.7E-09 50.0 10.2 159 1-184 9-176 (178) 5 protein:vir:5259 Length: 213 # 97.3 1.3E-06 8.2E-10 52.8 6.5 157 1-179 47-213 (213) 6 protein:vir:94061 Length: 175 97.3 7.2E-06 4.4E-09 48.8 10.4 147 1-184 8-175 (175) 7 protein:vir:80105 Length: 162 96.8 8.1E-06 5E-09 48.5 6.1 151 1-172 8-162 (162) 8 protein:vir:93602 Length: 114 49.2 0.14 8.5E-05 25.3 2.8 79 1-86 1-114 (114) 9 protein:vir:195 Length: 115 # 12.3 4.7 0.0029 16.9 3.9 87 1-124 1-115 (115) 10 protein:vir:8841 Length: 208 # 5.8 2.7 0.0017 18.2 -0.2 59 123-184 1-65 (208) No 1 >protein:vir:78612 Length: 178 # NCBI annotation: BcepNY3gp04 # Family: family:all:3176 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294841;genbank:gi:149882904;genbank:GeneID:5291083 Probab=97.76 E-value=7.3e-07 Score=54.24 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=98.1 Q ss_pred CchHHHHHHHHHHhhhhcCCC---EEEEeCCcc-CCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhhee Q lcl|NC_011142. 1 MTDQELFAVLRPIIMSVSGVP---ECILADPNK-PAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQTDV 76 (184) Q Consensus 1 mT~eelf~vlrpiV~~aTGvp---ecILADp~~-~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~~V 76 (184) .|.++||+.||-.++.....+ |||-+.+|+ +.|.|.|..++| +...|.+--.+.- ++.+. -..+ T Consensus 9 ~Te~di~~alr~fL~~lf~~~~~~eVi~gqqN~~p~P~g~fiimt~---l~~~~lsT~~~~Y--------~~~~~-~~~~ 76 (178) T protein:vir:78 9 PSEDEVFDTLWGWVTSLFDPALASQIAKADQNATSTLYGTYALIRP---GVREALNQTIRTY--------DATAG-TVSN 76 (178) T ss_pred ccHHHHHHHHHHHHHHhcCcccCceEEEeccCCCCccCCCEEEEec---ccccccccceeec--------cCccc-eeee Confidence 678899999999999998865 899999965 668899999999 3333333222221 12122 1223 Q ss_pred eeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhhc-ccccccchhhhhHHHH-hccCCcceeeEEEEEee-e-- Q lcl|NC_011142. 77 RAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKNK-IGWNGTGPVNNLTSLQ-SNNWEQRSEITITLMYE-T-- 151 (184) Q Consensus 77 rtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~k-igW~~v~~~nNLT~Lq-~a~~e~R~Qi~i~L~yE-T-- 151 (184) ..+....|-|-||-.+|+..|..++-. .|-..+...||+. |.==..|+-+.|+=.= +..+|+||.++++|-|- + T Consensus 77 ~~~~~~~~QvD~YG~~A~d~A~~i~tl-~Rs~~a~~~f~~~~iaPLYad~P~q~p~iN~e~QyE~Rwt~~~~lQ~Np~vt 155 (178) T protein:vir:78 77 ELHTGYWYQVDCYGPQAPDWANTIAAM-WRTMWSADALRGTALIPLYADQPQQLNIVNGENQFEQRYMVKLHAQVNQVAT 155 (178) T ss_pred eeeeEEEEEEEEecCChhHHHHHHHHH-hcChhHHHHHhcCcccceecCCcccCCccCccccccceEEEEEEEEeeeEEe Confidence 334577788899999999999988754 4555555555521 1111223333333222 34689999999999998 3 Q ss_pred cCHHHHhhhhhcceEEEecCcceeEEEEEEecC Q lcl|NC_011142. 152 SSKETMNAIYSAQVIVQNEKADTIEEFTVGVTP 184 (184) Q Consensus 152 vs~~~in~I~~a~f~iQ~e~~~~i~~~~V~~~~ 184 (184) ..-+-+.+ ++|+. +-.|.|-| T Consensus 156 ~pqdFfd~-----v~v~~-------~~~~di~~ 176 (178) T protein:vir:78 156 APQQFFTE-----VPATT-------ATPVDIVP 176 (178) T ss_pred ehhhhccc-----cccce-------ecccceec Confidence 33333333 22222 23355555 No 2 >protein:vir:106763 Length: 178 # NCBI annotation: gp05 # Family: family:all:3176 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944313;genbank:gi:38638612;genbank:GeneID:2657394 Probab=97.68 E-value=9.5e-07 Score=53.61 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=97.9 Q ss_pred CchHHHHHHHHHHhhhhcCCC---EEEEeCCcc-CCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhhee Q lcl|NC_011142. 1 MTDQELFAVLRPIIMSVSGVP---ECILADPNK-PAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQTDV 76 (184) Q Consensus 1 mT~eelf~vlrpiV~~aTGvp---ecILADp~~-~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~~V 76 (184) .|.++||+.||-.++.....+ |||-+.+|+ +.|.|.|..++| +...|.+--.+.- ++.+. -..+ T Consensus 9 ~Te~di~~alr~fL~~lf~~~~~~eVi~gqqN~~p~P~g~fiimt~---l~~~~lsT~~~~Y--------~~~~~-~~~~ 76 (178) T protein:vir:10 9 PSEDEVFDTLWGWVTSLFDPALASQIAKADQNATSTLYGTYALIRP---GVREALNQTIRTY--------DATAG-TVSN 76 (178) T ss_pred ccHHHHHHHHHHHHHHhcCcccCceEEEeccCCCCccCCCEEEEec---ccccccccceeec--------cCCcc-eeee Confidence 678899999999999998854 899999965 668899999999 3333333222221 12122 1223 Q ss_pred eeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhhc-ccccccchhhhhHHHH-hccCCcceeeEEEEEee-ecC Q lcl|NC_011142. 77 RAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKNK-IGWNGTGPVNNLTSLQ-SNNWEQRSEITITLMYE-TSS 153 (184) Q Consensus 77 rtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~k-igW~~v~~~nNLT~Lq-~a~~e~R~Qi~i~L~yE-Tvs 153 (184) ..+....|-|-||-.+|+..|..++-. .|-..+...||+. |.==..|+-+.|+=.= +..+|+||.++++|-|- +++ T Consensus 77 ~~~~~~~~QvD~YG~~A~d~A~~i~tl-~Rs~~a~~~f~~~~iaPLYad~P~q~p~iN~e~QyE~Rwt~~~~lQ~Np~vt 155 (178) T protein:vir:10 77 ELHTGYWYQVDCYGPQAPDWANTIAAM-WRTMWSADALRGTALIPLYADQPQQLNIVNGEGQYEQRYMVKLHAQVNQVAT 155 (178) T ss_pred eeeeEEEEEEEeecCChhHHHHHHHHH-hcChhHHHHHhcCcccceecCCcccCCccCccccccceEEEEEEEEeeeEEe Confidence 344667777899999999999988754 4555555555521 1111223333333222 34589999999999998 322 Q ss_pred HHHHhhhhhcceEEEecCcceeEE-EEEEecC Q lcl|NC_011142. 154 KETMNAIYSAQVIVQNEKADTIEE-FTVGVTP 184 (184) Q Consensus 154 ~~~in~I~~a~f~iQ~e~~~~i~~-~~V~~~~ 184 (184) +.-+|=++-.|.+ -.|.|-| T Consensus 156 -----------~pqdFfd~v~i~~~~~vd~~~ 176 (178) T protein:vir:10 156 -----------APQQFFTEVPATTATPVDIVP 176 (178) T ss_pred -----------ehhhhccccccccccccceec Confidence 2222222233322 2355555 No 3 >protein:vir:3637 Length: 178 # NCBI annotation: gp05 # Family: family:all:3176 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705632;genbank:gi:23752317;genbank:gi:47835036;genbank:GeneID:955731 Probab=97.50 E-value=3.2e-06 Score=50.74 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=98.3 Q ss_pred CchHHHHHHHHHHhhhhc-CCC--EEEEeCCcc-CCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhhee Q lcl|NC_011142. 1 MTDQELFAVLRPIIMSVS-GVP--ECILADPNK-PAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQTDV 76 (184) Q Consensus 1 mT~eelf~vlrpiV~~aT-Gvp--ecILADp~~-~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~~V 76 (184) .|.++||+.||...+..- ..+ |||-+.+|+ +.|.|.|..++| +...|.+--.+.- ++.++ -..+ T Consensus 9 ~Te~di~~alr~fL~~lf~p~~~~eVi~gqqN~~p~P~g~fiimt~---l~~~~lsT~~~~Y--------~~~~~-~~~~ 76 (178) T protein:vir:36 9 PSEDEVFDTLWEWVTSLFDPASAAQIAKADQNATSTLYGTYALIRP---GVREALNQTIRSY--------DATAQ-TVAN 76 (178) T ss_pred ccHHHHHHHHHHHHHHHcCCCCCceEEeecccCCCcCCCCEEEEec---ccccccccceeec--------CCcch-heee Confidence 677899999999987754 333 899999965 668899999999 3333333322221 12222 1233 Q ss_pred eeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhh-cccccccchhhhhHHHH-hccCCcceeeEEEEEee-ecC Q lcl|NC_011142. 77 RAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKN-KIGWNGTGPVNNLTSLQ-SNNWEQRSEITITLMYE-TSS 153 (184) Q Consensus 77 rtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~-kigW~~v~~~nNLT~Lq-~a~~e~R~Qi~i~L~yE-Tvs 153 (184) ..+....|-|-||-.+|+.+|..++-. .|-..+...||+ .|.==..++-+.|+=.= +..+|+||.++++|-|- +++ T Consensus 77 ~~~~~~~~QvD~YG~~A~d~A~~i~tl-~Rs~~a~~~f~~~~iaPLYad~p~qlp~iN~e~QyE~Rwt~~~~lQ~Np~vt 155 (178) T protein:vir:36 77 ELHTGYWYQVDCYGPQAPDWANTIAAM-WRTMWSADALRGTALIPLYADQPQQLNIVNGEGQYEQRYMVKLHAQVNQVET 155 (178) T ss_pred eeeeEEEEEEEeecCChhHHHHHHHHH-hcChhHHHHHhcCccccccCCCccccCccCccccccceEEEEEEEEeeeEEe Confidence 444566677899999999999988754 444555555541 12222344444444332 34589999999999987 322 Q ss_pred HHHHhhhhhcceEEEecCcceeEEE-EEEecC Q lcl|NC_011142. 154 KETMNAIYSAQVIVQNEKADTIEEF-TVGVTP 184 (184) Q Consensus 154 ~~~in~I~~a~f~iQ~e~~~~i~~~-~V~~~~ 184 (184) +.-+|=++-+|..- .|.+-| T Consensus 156 -----------~pqdFfd~~~~~~~~~vd~~~ 176 (178) T protein:vir:36 156 -----------APQLFFTEAPATTATPVDIVP 176 (178) T ss_pred -----------ehhhhcccCccceeeeccccc Confidence 22233333334422 366666 No 4 >protein:vir:101569 Length: 178 # NCBI annotation: gp05 # Family: family:all:3176 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958109;genbank:gi:41057655;genbank:GeneID:2716826 Probab=97.42 E-value=4.3e-06 Score=49.99 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=97.3 Q ss_pred CchHHHHHHHHHHhhhhc-CCC--EEEEeCCcc-CCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhhee Q lcl|NC_011142. 1 MTDQELFAVLRPIIMSVS-GVP--ECILADPNK-PAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQTDV 76 (184) Q Consensus 1 mT~eelf~vlrpiV~~aT-Gvp--ecILADp~~-~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~~V 76 (184) .|.++||+.||...+..- ..+ |||-+.+|+ +.|.|.|..++| +...|.+--.+.- ++.++ -..+ T Consensus 9 ~Te~di~~alr~fL~~lf~p~~~~eVi~gqqN~~p~P~g~fiimt~---l~~~~lsT~~~~Y--------~~~~~-~~~~ 76 (178) T protein:vir:10 9 PSEDEVFDTLWEWVTSLFDPASAAQIAKADQNATSTLYGTYALIRP---GVREALNQTIRSY--------DATAQ-TVAN 76 (178) T ss_pred ccHHHHHHHHHHHHHHHcCCCCCceEEeecccCCCcCCCCEEEEec---ccccccccceeec--------CCcch-heee Confidence 678899999999987754 333 899999965 668899999999 3333333322221 12222 1233 Q ss_pred eeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhh-cccccccchhhhhHHHH-hccCCcceeeEEEEEee-ec- Q lcl|NC_011142. 77 RAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKN-KIGWNGTGPVNNLTSLQ-SNNWEQRSEITITLMYE-TS- 152 (184) Q Consensus 77 rtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~-kigW~~v~~~nNLT~Lq-~a~~e~R~Qi~i~L~yE-Tv- 152 (184) ..+....|-|-||-.+|+..|..++-. .|-..+...||+ .|.==..++-+.|+=.= +..+|+||.++++|-|- ++ T Consensus 77 ~~~~~~~~QvD~YG~~A~d~A~~i~tl-~Rs~~a~~~f~~~~iaPLYad~p~qlp~iN~e~QyE~Rwt~~~~lQ~Np~vt 155 (178) T protein:vir:10 77 ELHTGYWYQVDCYGPQAPDWANTIAAM-WRTMWSADALRGTALIPLYADQPQQLNIVNGEGQYEQRYMVKLHAQVNQVAT 155 (178) T ss_pred eeeeEEEEEEEeecCChhHHHHHHHHH-hcChhHHHHHhcCccccccCCCccccCccCccccccceEEEEEEEEeeeEEe Confidence 444566677899999999999988754 445555555541 12222344444444332 34589999999999998 33 Q ss_pred -CHHHHhhhhhcceEEEecCcceeEEEEEEecC Q lcl|NC_011142. 153 -SKETMNAIYSAQVIVQNEKADTIEEFTVGVTP 184 (184) Q Consensus 153 -s~~~in~I~~a~f~iQ~e~~~~i~~~~V~~~~ 184 (184) .-+-+.+ ++|+. +-.|.|-| T Consensus 156 ~pqdFfd~-----~~i~~-------~~~~di~~ 176 (178) T protein:vir:10 156 APQLFFTE-----APATT-------ATPVDIVP 176 (178) T ss_pred ehhhhccc-----ccccc-------ccccceec Confidence 3333333 22222 23355555 No 5 >protein:vir:5259 Length: 213 # NCBI annotation: hypothetical protein # Family: family:all:4879 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852764;genbank:gi:31544039;uniprot:Q7Y5T6;genbank:GeneID:2753558 Probab=97.34 E-value=1.3e-06 Score=52.80 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=106.6 Q ss_pred CchHHH----HHHHHHHhhhhcCCCE--EEEeCCccCCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhh Q lcl|NC_011142. 1 MTDQEL----FAVLRPIIMSVSGVPE--CILADPNKPAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQT 74 (184) Q Consensus 1 mT~eel----f~vlrpiV~~aTGvpe--cILADp~~~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~ 74 (184) |.---+ ...||+++-+++++|+ ||=+|+. -.|-|++-++++ -+-...|-+ .+++ ++. +| T Consensus 47 M~TTTvS~lD~~~LRq~ir~Ll~LPeg~Vid~~~d-a~p~~pFITV~~-l~ss~lG~a--~reF---------dg~--rE 111 (213) T protein:vir:52 47 MDTTTISGFDIVRLRKLIQQALQLPDGVVIGGWLP-ENPLSAFITVDV-LMSSETGIA--RRDF---------DGK--RE 111 (213) T ss_pred hhhhccccccHHHHHHHHHHHHhCCcceecCCcCC-CCCCCCeEEEee-cccchhhhh--hhhc---------cCc--hh Confidence 332222 3579999999999994 4446653 338889999999 777888987 4444 222 46 Q ss_pred eeeeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhhcccccccchhhhhHHHHhccCCcceeeEEEEEee---- Q lcl|NC_011142. 75 DVRAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKNKIGWNGTGPVNNLTSLQSNNWEQRSEITITLMYE---- 150 (184) Q Consensus 75 ~Vrtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~kigW~~v~~~nNLT~Lq~a~~e~R~Qi~i~L~yE---- 150 (184) .+..++.-.+|||-|--+|+.+.+-|+--=-=--.-..|..-+-|-=+.++++||+.-+-++-|+|+|++..+--+ T Consensus 112 vit~S~et~vs~tafGtnAy~ll~kl~a~L~ss~al~~LK~l~aGlVr~S~v~nLsa~iggg~e~RArfdltfsH~HrVe 191 (213) T protein:vir:52 112 RITMSMQNTVSFSCFGTNAMAQCYKLKAILQSSVILQALKTMNVGIVSFSDVRNLTATIGSDYEERGQFDAVFSHHHIVD 191 (213) T ss_pred hhhhhhccEEEEEEeChhHHHHHHHHHHHHhHHHHHHHHHHhccceeeeccccccceecCCCchhheeeeeeeeeeeeec Confidence 6889999999999999999999877653211112234566677888899999999999999999999999998755 Q ss_pred ecCHHHHhhhhhcceEEEecCcceeEEEE Q lcl|NC_011142. 151 TSSKETMNAIYSAQVIVQNEKADTIEEFT 179 (184) Q Consensus 151 Tvs~~~in~I~~a~f~iQ~e~~~~i~~~~ 179 (184) |.- +-+.++.+ +++.=+-+-++ T Consensus 192 t~l-~~~~~v~~------rt~hit~~~~~ 213 (213) T protein:vir:52 192 TPL-DPIKRVEQ------RTNHLTQQIGE 213 (213) T ss_pred cch-HHHHHhhh------hhhhHHHhhcC Confidence 322 22223222 11111111111 No 6 >protein:vir:94061 Length: 175 # NCBI annotation: hypothetical protein # Family: family:all:3176 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453620;genbank:gi:84662656;genbank:GeneID:5142571 Probab=97.33 E-value=7.2e-06 Score=48.79 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=93.0 Q ss_pred CchHHHHHHHHHHhhhhcCCC----EEEEeCCcc-CCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhhe Q lcl|NC_011142. 1 MTDQELFAVLRPIIMSVSGVP----ECILADPNK-PAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQTD 75 (184) Q Consensus 1 mT~eelf~vlrpiV~~aTGvp----ecILADp~~-~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~~ 75 (184) -|.++||+.||..++....+| |||-+.+|+ |.|.|.|..++| +. .-|.+--.+.- ++.+. ... T Consensus 8 ~Te~di~~alr~fL~~lf~lp~~~~eVi~g~qN~~p~P~g~fi~mt~-l~--~~~lsT~~~~Y--------~~~~g-~~~ 75 (175) T protein:vir:94 8 PTEDAVFDAMFGFLAKVLDLPDDTQAIIKGFQNLSSTPTGSCVVVSP-GM--MTRQDFGSRLY--------DPGLS-KVV 75 (175) T ss_pred ccHHHHHHHHHHHHHHHcCCCCCCceEEEeccCCCCccCCCEEEEec-cc--ccccccceeee--------ccccc-cee Confidence 678999999999999998864 899999965 668899999999 33 22222222221 12222 334 Q ss_pred eeeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhhcccccccchhhhhHHHH------------hccCCcceee Q lcl|NC_011142. 76 VRAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKNKIGWNGTGPVNNLTSLQ------------SNNWEQRSEI 143 (184) Q Consensus 76 Vrtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~kigW~~v~~~nNLT~Lq------------~a~~e~R~Qi 143 (184) +..+....|-|-||-.+|+.+|..++ .|||..-|=.+.. .++.-|+ +..+|+||.+ T Consensus 76 ~~~~~q~~~QvD~YG~~A~d~A~~~~----------tl~Rs~~a~~~~~--~~~~PLYad~p~qlp~iN~e~QyE~Rwt~ 143 (175) T protein:vir:94 76 IEAHLTYSYQVDCYGPLAPTWASVIS----------VAWKSMWGVDNTA--PAFAPLYADAPQQLNIVNSEGQFEQRFMV 143 (175) T ss_pred eeeeeEEEEEEEeecCChHHHHHHHH----------HHhcChhHhhhhh--cccccccCcCccccCccCccccccceEEE Confidence 55667788889999999999999885 4555543333211 2333443 3458999999 Q ss_pred EEEEEee---ecCHHHHhhhhhcceEEEecCcceeEEEEEEe-cC Q lcl|NC_011142. 144 TITLMYE---TSSKETMNAIYSAQVIVQNEKADTIEEFTVGV-TP 184 (184) Q Consensus 144 ~i~L~yE---Tvs~~~in~I~~a~f~iQ~e~~~~i~~~~V~~-~~ 184 (184) +++|-|- |..-+-+.+ + .+....|.. -| T Consensus 144 ~~~lQ~Np~vt~pq~F~d~---v----------~v~~~~~d~~~P 175 (175) T protein:vir:94 144 RLFGQVNQRVALPQDFFDS---V----------QLTSLNIADLLP 175 (175) T ss_pred EEEEEeeeEEeeehhhccc---C----------CcceeeceecCC Confidence 9999998 333333333 2 222222211 12 No 7 >protein:vir:80105 Length: 162 # NCBI annotation: gp13 # Family: family:all:2729 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468717;genbank:gi:157325297;genbank:GeneID:5601796 Probab=96.78 E-value=8.1e-06 Score=48.49 Aligned_cols=151 Identities=13% Similarity=0.039 Sum_probs=107.8 Q ss_pred CchHHHHHHHHHHhhhhcCCCEEEEeCCccCCCCccceeeccCCChHhhhhhhhhhhhhhccCCCCCchhHhhheeeeeE Q lcl|NC_011142. 1 MTDQELFAVLRPIIMSVSGVPECILADPNKPAPPGVYASIRPRQSVRERGQANIYRANTALVPSPIGPVNDLQTDVRAQI 80 (184) Q Consensus 1 mT~eelf~vlrpiV~~aTGvpecILADp~~~aP~G~YAt~rPrqsir~~GQa~i~r~~~~~vp~~~~p~~dl~~~Vrtqi 80 (184) ..-+-|-+.++.-|+.-++-=.||.+|+..+-|.=||.+|.- . +.|. |-. .+ ..=+-++ T Consensus 8 ~~~~~lv~~ii~~i~~~~~gl~vI~~~~~g~~p~yPF~TY~v-~--~pyi------------~~~-~~-----~~~~e~~ 66 (162) T protein:vir:80 8 YDYGKLVKTLINAVNELSGGLQLIESSSGGEQPEYPFCQYTI-T--SPYI------------AIS-PD-----IVEGEQF 66 (162) T ss_pred ccHHHHHHHHHHHHHhhhcceeEEEccCCCCCCCCCeEEEEE-e--cCcc------------ccC-Cc-----ccCCcce Confidence 455677788886667666555699999999999999999986 1 1111 111 01 1113477 Q ss_pred EEEEEeeeec---hhHHHHHHHHHhccCCCChHHHHHhh-cccccccchhhhhHHHHhccCCcceeeEEEEEeeecCHHH Q lcl|NC_011142. 81 MCDVSVQFYR---GAAMQMAESLKQCNKRPSVSAALFKN-KIGWNGTGPVNNLTSLQSNNWEQRSEITITLMYETSSKET 156 (184) Q Consensus 81 ~~~~sVNfyr---g~A~~~A~~L~~ankrp~Vs~~Lfk~-kigW~~v~~~nNLT~Lq~a~~e~R~Qi~i~L~yETvs~~~ 156 (184) .|.+|++.|- -+||..|+-|...=+=+.+-..++.+ +|.=-.|+++.|.+.|+....|.|+-.|+.|-|.=--... T Consensus 67 ~~~isi~~~S~~~~eAl~la~~l~~~f~~~~~~~~~~~~~gIvvvdv~~~~~R~~~~~~~yerR~GFD~~~Rv~r~~e~~ 146 (162) T protein:vir:80 67 EIVISLTWRALSGHQALNLANITNKYFRSQKGRFFMQENGGIVVVSVQNSGLRDTFISIEYERSAGIDLRLRVVDSYSSE 146 (162) T ss_pred EEEEEEEEEeCCHHHHHHHHHHHHHHhhcCCceeeeeecCcEEEEecCCCccceeEeeeeeeeeecceEEEEEeeccccc Confidence 8888888885 46777888877654447888777774 8888899999999999999999999999999998333445 Q ss_pred HhhhhhcceEEEecCc Q lcl|NC_011142. 157 MNAIYSAQVIVQNEKA 172 (184) Q Consensus 157 in~I~~a~f~iQ~e~~ 172 (184) ++-|.+..+.=|+--+ T Consensus 147 ~~tIe~i~~~~~~~g~ 162 (162) T protein:vir:80 147 IQEIDNISFTNENLGG 162 (162) T ss_pred cceeeeecccCcccCC Confidence 5555555554444433 No 8 >protein:vir:93602 Length: 114 # NCBI annotation: putative structural component # Family: family:all:896 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449300;genbank:gi:157166048;uniprot:Q6H9U1;genbank:GeneID:5580424 Probab=49.24 E-value=0.14 Score=25.31 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=37.5 Q ss_pred CchHHHHHHHHHHhhh-------------------------hcCCCEEEEeCCccCCCCccceeeccCCCh--Hhhhhhh Q lcl|NC_011142. 1 MTDQELFAVLRPIIMS-------------------------VSGVPECILADPNKPAPPGVYASIRPRQSV--RERGQAN 53 (184) Q Consensus 1 mT~eelf~vlrpiV~~-------------------------aTGvpecILADp~~~aP~G~YAt~rPrqsi--r~~GQa~ 53 (184) ||.++||++|.|++-. ++|+|+-.|.+|. ... +|-++.+ +.+.+|+ T Consensus 1 M~e~~i~~lL~~~~~gRvyp~~~P~~~~~~~~~~Pyiv~q~vsg~p~~~l~gp~-----~~~--~~vQIDvyA~t~~~A~ 73 (114) T protein:vir:93 1 MTEADLYPHLAHLAGGQVYPYVVPLLDGRPSVALPWVVFSLISSVSADVMGGQA-----ESS--VSVQIDVYAGTVTQAR 73 (114) T ss_pred CchHHHHHHHHhhcCcccccccCCcccCcCCccCceEEEEeccCcccccccCcc-----ccc--eEEEEEeeeCCHHHHH Confidence 9999999999998532 2344433343321 111 1111222 3344555 Q ss_pred hhhhhh----hc-cCCCCCchhHhh---heeeeeEEEEEEe Q lcl|NC_011142. 54 IYRANT----AL-VPSPIGPVNDLQ---TDVRAQIMCDVSV 86 (184) Q Consensus 54 i~r~~~----~~-vp~~~~p~~dl~---~~Vrtqi~~~~sV 86 (184) ..++.+ +. .|....+.++-. .-=|+++.|++.| T Consensus 74 ~l~~~v~~Al~~~~~~~~~~~~~ye~dt~lyR~~~d~~v~~ 114 (114) T protein:vir:93 74 QIRQDAREAIMLLAPGSVSEMQDYIPENRCYRATLEFQVTV 114 (114) T ss_pred HHHHHHHHHHhhcCcEeecCCCcccccccceeeEEEEEEeC Confidence 544422 21 122333333321 2236677777777 No 9 >protein:vir:195 Length: 115 # NCBI annotation: Gp11 # Family: family:all:896 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037705;genbank:gi:9634170;genbank:GeneID:1262540 Probab=12.25 E-value=4.7 Score=16.91 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=32.0 Q ss_pred CchHHHHHHHHHHhh--------------------------hhcCCCEEEEeCCccCCCCccceeeccCCCh--Hhhhhh Q lcl|NC_011142. 1 MTDQELFAVLRPIIM--------------------------SVSGVPECILADPNKPAPPGVYASIRPRQSV--RERGQA 52 (184) Q Consensus 1 mT~eelf~vlrpiV~--------------------------~aTGvpecILADp~~~aP~G~YAt~rPrqsi--r~~GQa 52 (184) ||.++||++|.|++- .++|+|+-.|..|.. -..++ ++.+ +.+++| T Consensus 1 M~e~~i~~lL~~l~~gRvyp~~aP~~~~~~~~~~~Pyiv~q~vsg~p~~~L~G~~~-----~~~~v--QIDvyA~t~~~A 73 (115) T protein:vir:19 1 MNEDNIYALLSPLAEGRVYPYVAPLGSDGKPSVSPPWIIFSIVDDVSADVLCGQAE-----SRVSV--QVDVYSTSIAES 73 (115) T ss_pred CchhHHHHHHhhhcCcccceeeccCCCCCCccccCCeEEEEeccCcccccccCCCc-----cceEE--EEEEeeCChHHH Confidence 999999999998742 223333333333211 01111 1111 123333 Q ss_pred hhhhhhhhccCCCCCchhHhhheeeeeEEEEEEeeeechhHHHHHHHHHhccCCCChHHHHHhhcccccccc Q lcl|NC_011142. 53 NIYRANTALVPSPIGPVNDLQTDVRAQIMCDVSVQFYRGAAMQMAESLKQCNKRPSVSAALFKNKIGWNGTG 124 (184) Q Consensus 53 ~i~r~~~~~vp~~~~p~~dl~~~Vrtqi~~~~sVNfyrg~A~~~A~~L~~ankrp~Vs~~Lfk~kigW~~v~ 124 (184) +-.|+ .||..|.-.+-+...++ |-+ +--..|||..+..+=+. T Consensus 74 ~~l~~-----------------~i~~Al~~~~p~~~~~~------------~~y-e~dt~lyR~s~d~~V~~ 115 (115) T protein:vir:19 74 RSLRD-----------------LVLASLEPLTPTEVVKI------------PGY-EPDYRLYRATLDFKVTP 115 (115) T ss_pred HHHHH-----------------HHHHHhhhcCCEEecCC------------CCc-ccchhceeeEEEEEecC Confidence 33333 33333321111111111 111 12233333333333222 No 10 >protein:vir:8841 Length: 208 # NCBI annotation: constituent protein # Family: family:all:6621 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775249;genbank:gi:27476047;genbank:GeneID:2700595 Probab=5.85 E-value=2.7 Score=18.19 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=36.5 Q ss_pred cchhhhhHHHHhc--cCCcceeeEEEEEee--ecCHHHHhhhhhcceEEEecCcce--eEEEEEEecC Q lcl|NC_011142. 123 TGPVNNLTSLQSN--NWEQRSEITITLMYE--TSSKETMNAIYSAQVIVQNEKADT--IEEFTVGVTP 184 (184) Q Consensus 123 v~~~nNLT~Lq~a--~~e~R~Qi~i~L~yE--Tvs~~~in~I~~a~f~iQ~e~~~~--i~~~~V~~~~ 184 (184) -.+++|..+|+.+ +|=.|+..|-.++=- +..+..||+.++++-. |...+ +..++|.|-+ T Consensus 1 ~~~i~~Y~~L~~~~~~~l~R~Dlt~~~~p~FI~lAE~~inr~Lr~~~~---e~~vtl~~~~g~~~LP~ 65 (208) T protein:vir:88 1 MATINNVTDLAIAAIQWSDRQDLTQELLMLFIGNTTDRLNRLLRVREN---EHFETLMAFGGGIEIPE 65 (208) T ss_pred CCCcCCHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHhccccc---ceEEEEEecCceeeCCh Confidence 6788888888864 677787776333222 5667778777665432 33333 4456666544 Done!