Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : II-E1 | Genbank acc : NC_010495

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	17	lcl\|NC_010495.1_cdsid_YP_001742054.1	HHsearch (proba=100.00%)
Portal	4	lcl\|NC_010495.1_cdsid_YP_001742041.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_010495.1_cdsid_YP_001742039.1	Blast (e-value=2e-63)
MTP	29	lcl\|NC_010495.1_cdsid_YP_001742066.1	Blast (e-value=7e-13)
Sheath	NOT FOUND
Ad1	24	lcl\|NC_010495.1_cdsid_YP_001742061.1	HHsearch (proba=100.00%)
Hc1	25	lcl\|NC_010495.1_cdsid_YP_001742062.1	HHsearch (proba=100.00%)
Ne1	26	lcl\|NC_010495.1_cdsid_YP_001742063.1	HHsearch (proba=100.00%)
Tc1	27	lcl\|NC_010495.1_cdsid_YP_001742064.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:80068 protein:vir:5255	ES18 B054 Aaphi23	32 % 12 % 14 %
Portal	protein:vir:105782 protein:vir:80040 protein:vir:79647	ES18 B054 TLS	31 % 17 % 15 %
TermL	protein:vir:96782 protein:vir:105705 protein:vir:106641	phiHSIC ES18 187	35 % 35 % 25 %
MTP	protein:vir:105771 protein:vir:196 protein:vir:93600	ES18 HK97 phi 4795	28 % 19 % 19 %
Ad1	protein:vir:105776	ES18	29 %
Hc1	protein:vir:105774	ES18	37 %
Ne1	protein:vir:105773 protein:vir:102441 protein:vir:106570	ES18 Pipefish Lj965	33 % 23 % 21 %
Tc1	protein:vir:105772 protein:vir:9648 protein:vir:98629	ES18 315.1 phi3396	20 % 12 % 12 %