Query lcl|NC_010495.1_cdsid_YP_001742061.1 [gene=VIP0024] [protein=hypothetical protein] [protein_id=YP_001742061.1] [location=15419..15760] Match_columns 113 No_of_seqs 15 out of 21 Neff 2.9 Searched_HMMs 1612 Date Thu Nov 7 12:53:21 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_24 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_24_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:105776 Length: 133 100.0 1.4E-54 8.6E-58 315.8 9.9 110 2-113 1-130 (133) 2 protein:vir:104344 Length: 132 62.7 0.23 0.00014 24.1 6.4 90 5-112 1-132 (132) 3 protein:vir:103283 Length: 125 8.3 8 0.0049 15.6 5.8 94 1-111 1-125 (125) 4 protein:vir:9265 Length: 430 # 7.6 2.5 0.0015 18.4 0.6 111 1-113 87-220 (430) 5 protein:vir:100939 Length: 430 7.6 2.5 0.0015 18.4 0.6 111 1-113 87-220 (430) 6 protein:vir:78106 Length: 236 4.9 14 0.0085 14.3 4.3 103 1-113 1-120 (236) 7 protein:vir:8104 Length: 170 # 2.4 26 0.016 12.8 2.0 68 1-96 97-170 (170) 8 protein:vir:2106 Length: 430 # 1.8 23 0.014 13.1 0.7 110 1-113 87-220 (430) 9 protein:vir:79640 Length: 134 1.3 49 0.03 11.3 6.1 97 1-111 1-134 (134) 10 protein:vir:99546 Length: 200 1.1 59 0.036 10.8 2.0 56 58-113 1-68 (200) No 1 >protein:vir:105776 Length: 133 # NCBI annotation: gp11 # Family: family:all:10997 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224149;genbank:gi:62362224;genbank:GeneID:3342529 Probab=100.00 E-value=1.4e-54 Score=315.84 Aligned_cols=110 Identities=29% Similarity=0.436 Sum_probs=99.7 Q ss_pred ccccchh----------------HHHHHHHhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcCCceeecccCCcccccc Q lcl|NC_010495. 2 TITTTDA----------------SGILCLVSSISECLELNYPNDECRQNAIMLWASILISANTAGRYVTSQSAPSGASQS 65 (113) Q Consensus 2 ~~~~~~~----------------s~il~qvnsi~~CLd~~agyd~~~q~LI~~Yav~Lla~~~~~R~IsSQ~APSGASrS 65 (113) -||++|+ .+||||||+|++|||+ |||||+|+|||+|+++|||+++|+|||+||+|||||||| T Consensus 1 mIT~~qa~~~L~slG~svP~~iL~~~v~q~nsi~~cLda--gY~e~tq~LI~lya~~LlA~~~g~R~IsSQ~APSGASrS 78 (133) T protein:vir:10 1 MITTEQAKEYLESVGITLPDFILQAIVEQANSIQECLDA--HYPPATALLIQSYLLGLMALGQGDRYISSQTAPNGASRS 78 (133) T ss_pred CCCHHHHHHHHHhcCCcchHHHHHHHHHHHhhHHHHHhC--CCCHHHHHHHHHHHHHHHhhccCCceeecccCCcccccc Confidence 4566654 6899999999999995 699999999999999999999999999999999999999 Q ss_pred eee--cCchHHHHHHHHHhhccccccccC-CcCCCCc-cceeeeecCcccCC Q lcl|NC_010495. 66 FAY--GSKPWVALYNQMKLLDTAGCTGDL-VEDPDGS-GKPWFAVVRGSKCK 113 (113) Q Consensus 66 F~Y--~~d~~~~l~~~L~~LDt~GCt~~L-pidp~~~-~vg~f~VvgGc~c~ 113 (113) |+| ++++|++||++|+.|||+|||++| ||||.+. .||||+|||||||. T Consensus 79 F~Y~~~~~~~~~l~~~L~~lD~~gCt~~Lip~d~~~~a~vG~f~vvggc~c~ 130 (133) T protein:vir:10 79 FRYQSFADRWKGALSLLRGADKFRCANGLIPPDPTNTAFAGIWIGKGGCMCN 130 (133) T ss_pred ccccCCCccHHHHHHHHHhhhhccccccccCCCccccccceeeeeccccccC Confidence 999 445699999999999999999999 8887432 28999999999999 No 2 >protein:vir:104344 Length: 132 # NCBI annotation: hypothetical protein # Family: family:all:5122 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398973;genbank:gi:81343957;genbank:GeneID:3778876 Probab=62.74 E-value=0.23 Score=24.07 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=48.8 Q ss_pred cchhHHHHHHHhhHHHHHhcCCCCCHHH---------------------HHHHHHHHHHHHHhhcCCceeecccCCc--- Q lcl|NC_010495. 5 TTDASGILCLVSSISECLELNYPNDECR---------------------QNAIMLWASILISANTAGRYVTSQSAPS--- 60 (113) Q Consensus 5 ~~~~s~il~qvnsi~~CLd~~agyd~~~---------------------q~LI~~Yav~Lla~~~~~R~IsSQ~APS--- 60 (113) -.| +||||..++-+-+++ ++|.+ -+..-+|++=||.+ .++|+=.+|+.-+ T Consensus 1 ~~~--~~~e~~R~l~P~f~k---vpdevI~~wielA~lfVc~~~~g~~~~~AlaL~taHLm~~-dga~k~en~~~~t~S~ 74 (132) T protein:vir:10 1 MND--AILAFMRSLVPALKA---VDDESINVWIDLARLYVCADKFGNDADRAVGLYALHLMLS-DGAFKGENEGLETYSR 74 (132) T ss_pred Cch--HHHHHHHHhcchhhc---CChHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhc-cccccccccchhhhhh Confidence 456 788998888887763 44433 22334555555532 3444433332222 Q ss_pred --------c----------cccceeecCchHHHHHHHHHhhccccccccCCcCCCCccceeeeecCcccC Q lcl|NC_010495. 61 --------G----------ASQSFAYGSKPWVALYNQMKLLDTAGCTGDLVEDPDGSGKPWFAVVRGSKC 112 (113) Q Consensus 61 --------G----------ASrSF~Y~~d~~~~l~~~L~~LDt~GCt~~Lpidp~~~~vg~f~VvgGc~c 112 (113) | |++| .-...+|-.||+.|+++- |=-=.|+.. .++|+|-| T Consensus 75 rvaS~Sl~Ge~Sisf~~~sa~~s-~L~~tp~Gkl~~~L~k~~--~GgfgL~t~---------~~~~~cgc 132 (132) T protein:vir:10 75 RMASYSLSGEFSITYDNQSAIQG-DLSSSSWGRMYKALLRKK--GGGFGLITS---------AAGGGCGC 132 (132) T ss_pred hhhhhcccCceeeeccccccccc-ccccCcHHHHHHHHHHhc--cCccccccc---------cCcCCCCC Confidence 1 3333 123456889999999842 222244421 24799999 No 3 >protein:vir:103283 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:5122 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277463;genbank:gi:71834105;genbank:GeneID:3562394 Probab=8.28 E-value=8 Score=15.63 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=47.0 Q ss_pred Cccccc------h--hHHHHHHHhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhc-----------CCceeeccc---- Q lcl|NC_010495. 1 MTITTT------D--ASGILCLVSSISECLELNYPNDECRQNAIMLWASILISANT-----------AGRYVTSQS---- 57 (113) Q Consensus 1 ~~~~~~------~--~s~il~qvnsi~~CLd~~agyd~~~q~LI~~Yav~Lla~~~-----------~~R~IsSQ~---- 57 (113) |.+.-- | ..+.+|..+-. -|.+ + |-+..-...-+|++=||.+.. .-|||.|-+ T Consensus 1 mR~l~P~f~~vpdevi~~wid~A~lF-VC~~-~--fg~~~~~Al~lytlHLm~~dga~k~e~~~~~~~s~r~~s~slsGE 76 (125) T protein:vir:10 1 MRTLYPPLKSQPDDVLNAWIEVAKLF-ICLD-K--FGDKQVQALAFYTLHLLSQDIALKTENDSSQTSSERVKSYSLSGE 76 (125) T ss_pred CccccchhhccCHHHHHHHHHHHHHH-HHHh-h--hhhHHHHHHHHHHHHHHhcccccccccccccccccceeeeeeccc Confidence 322110 1 12333333322 2887 4 555555577889988887542 233444332 Q ss_pred -----CCccccc-ceeecCchHHHHHHHHHhhccccccccCCcCCCCccceeee--ecCccc Q lcl|NC_010495. 58 -----APSGASQ-SFAYGSKPWVALYNQMKLLDTAGCTGDLVEDPDGSGKPWFA--VVRGSK 111 (113) Q Consensus 58 -----APSGASr-SF~Y~~d~~~~l~~~L~~LDt~GCt~~Lpidp~~~~vg~f~--VvgGc~ 111 (113) +|.-+-+ +|.-...+|-.+|..|+++ . +.++|.+- ++|||. T Consensus 77 ~Sit~~~~s~d~s~~~L~~T~wGk~~~~L~k~--~-----------~GgFaL~T~~~~~~cr 125 (125) T protein:vir:10 77 YTISYDTSTAAASSSNLEESSWGKLYIDLMRL--K-----------VGRWGLITSGGSRCCR 125 (125) T ss_pred eEeecccccccccccccccCchHHHHHHHHHh--c-----------CCceeeeccccccCCC Confidence 2222222 2444667899999999874 1 22223222 246666 No 4 >protein:vir:9265 Length: 430 # NCBI annotation: 5 # Family: family:all:1412 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720329;genbank:gi:24371587;genbank:GeneID:955820 Probab=7.65 E-value=2.5 Score=18.42 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=55.6 Q ss_pred CccccchhHHHHHHHhhHHHHHhcCCCCCHHHHHHHHHHHHH------------------HHHhhcCCceeecccCCccc Q lcl|NC_010495. 1 MTITTTDASGILCLVSSISECLELNYPNDECRQNAIMLWASI------------------LISANTAGRYVTSQSAPSGA 62 (113) Q Consensus 1 ~~~~~~~~s~il~qvnsi~~CLd~~agyd~~~q~LI~~Yav~------------------Lla~~~~~R~IsSQ~APSGA 62 (113) .+++.-+-+.+-..-+-|.+-+.+= ..+-.+.|+.+|... +-..++..+++..+++|.|. T Consensus 87 ~~~~~kel~~~~~~~~~i~~Am~~L--A~~Vd~dl~~~~~~~~~~v~~~~~~t~~~~~~~~~~~A~a~~~L~~~~vP~~~ 164 (430) T protein:vir:92 87 FQLRADDLRDETAYRHRIQSAARKL--ANNVELKVANMAAEMGSLVITSPDAIGTNTADAWNFVADAEELMFSRELNRDM 164 (430) T ss_pred EEechhHhcChhHHHHHhHHHHHHH--HHHHHHHHHHHhhhcccccccccccCCCcCCcchhhHHHHHHHHHHhcCCCCC Confidence 2333222221111222233333221 112223355554321 23445567889999999988 Q ss_pred ccceeecCchHHHHHHHHHhhccccccc-cCCcC-CCCccceee-ee--cCcccCC Q lcl|NC_010495. 63 SQSFAYGSKPWVALYNQMKLLDTAGCTG-DLVED-PDGSGKPWF-AV--VRGSKCK 113 (113) Q Consensus 63 SrSF~Y~~d~~~~l~~~L~~LDt~GCt~-~Lpid-p~~~~vg~f-~V--vgGc~c~ 113 (113) =|..-|++..-.+|.+.|..|...|=.. +.-.+ --+..+++| |+ ...+.=- T Consensus 165 ~R~~vldp~~~~~l~~~l~~l~~~~~~~~~A~r~g~i~~~~~Gfd~~~~~~~~~~~ 220 (430) T protein:vir:92 165 GTSYFFNPQDYKKAGYDLTKRDIFGRIPEEAYRDGTIQRQVAGFDDVLRSPKLPVL 220 (430) T ss_pred CcEEEeChHHHHHHHhhhccccccccchhHHHhhccccccchhhhhhhhcCCcccc Confidence 8998898888888888898888777322 22211 112234444 54 2222211 No 5 >protein:vir:100939 Length: 430 # NCBI annotation: Gp5 # Family: family:all:1412 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006408;genbank:gi:46358700;genbank:GeneID:2777089 Probab=7.65 E-value=2.5 Score=18.42 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=55.6 Q ss_pred CccccchhHHHHHHHhhHHHHHhcCCCCCHHHHHHHHHHHHH------------------HHHhhcCCceeecccCCccc Q lcl|NC_010495. 1 MTITTTDASGILCLVSSISECLELNYPNDECRQNAIMLWASI------------------LISANTAGRYVTSQSAPSGA 62 (113) Q Consensus 1 ~~~~~~~~s~il~qvnsi~~CLd~~agyd~~~q~LI~~Yav~------------------Lla~~~~~R~IsSQ~APSGA 62 (113) .+++.-+-+.+-..-+-|.+-+.+= ..+-.+.|+.+|... +-..++..+++..+++|.|. T Consensus 87 ~~~~~kel~~~~~~~~~i~~Am~~L--A~~Vd~dl~~~~~~~~~~v~~~~~~t~~~~~~~~~~~A~a~~~L~~~~vP~~~ 164 (430) T protein:vir:10 87 FQLRADDLRDETAYRHRIQSAARKL--ANNVELKVANMAAEMGSLVITSPDAIGTNTADAWNFVADAEELMFSRELNRDM 164 (430) T ss_pred EEechhHhcChhHHHHHhHHHHHHH--HHHHHHHHHHHhhhcccccccccccCCCcCCcchhhHHHHHHHHHHhcCCCCC Confidence 2333222221111222233333221 112223355554321 23445567889999999988 Q ss_pred ccceeecCchHHHHHHHHHhhccccccc-cCCcC-CCCccceee-ee--cCcccCC Q lcl|NC_010495. 63 SQSFAYGSKPWVALYNQMKLLDTAGCTG-DLVED-PDGSGKPWF-AV--VRGSKCK 113 (113) Q Consensus 63 SrSF~Y~~d~~~~l~~~L~~LDt~GCt~-~Lpid-p~~~~vg~f-~V--vgGc~c~ 113 (113) =|..-|++..-.+|.+.|..|...|=.. +.-.+ --+..+++| |+ ...+.=- T Consensus 165 ~R~~vldp~~~~~l~~~l~~l~~~~~~~~~A~r~g~i~~~~~Gfd~~~~~~~~~~~ 220 (430) T protein:vir:10 165 GTSYFFNPQDYKKAGYDLTKRDIFGRIPEEAYRDGTIQRQVAGFDDVLRSPKLPVL 220 (430) T ss_pred CcEEEeChHHHHHHHhhhccccccccchhHHHhhccccccchhhhhhhhcCCcccc Confidence 8998898888888888898888777322 22211 112234444 54 2222211 No 6 >protein:vir:78106 Length: 236 # NCBI annotation: hypothetical protein # Family: family:all:29846 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294804;genbank:gi:149882825;genbank:GeneID:5309134 Probab=4.92 E-value=14 Score=14.34 Aligned_cols=103 Identities=26% Similarity=0.405 Sum_probs=54.2 Q ss_pred Cccccc-----h--hHHHHHHHhhHHHHHhcCCCCC-----HHHHHHHHHHHHHHHHhhcCCceeecccCCcccccceee Q lcl|NC_010495. 1 MTITTT-----D--ASGILCLVSSISECLELNYPND-----ECRQNAIMLWASILISANTAGRYVTSQSAPSGASQSFAY 68 (113) Q Consensus 1 ~~~~~~-----~--~s~il~qvnsi~~CLd~~agyd-----~~~q~LI~~Yav~Lla~~~~~R~IsSQ~APSGASrSF~Y 68 (113) |||... | |--.|-....|-+||| .-|-| |++..|-.+|--+| .-|+|.+.|++--| |-.||+- T Consensus 1 mtikpdeigsddgaarrvlvlartiapcld-slpedsdrrkdalailrnvyeevl---trgarnvrsegvas-arvsyev 75 (236) T protein:vir:78 1 MTIKPDEIGSDDGAARRVLVLARTIAPCLD-SLPEDSDRRKDALAILRNVYEEVL---TRGARNVRSEGVAS-ARVSYEV 75 (236) T ss_pred CccCcccccCccccceeeeehhhhhhhhhh-hccccchhhhHHHHHHHHHHHHHH---hhhhhhhhhccccc-eeeeecc Confidence 887542 2 2234556678999999 45655 45555666776554 67899999998755 4556665 Q ss_pred cCchHHHHHHHHHhhccccccccCCcC---CCCccceeeeecC--cccCC Q lcl|NC_010495. 69 GSKPWVALYNQMKLLDTAGCTGDLVED---PDGSGKPWFAVVR--GSKCK 113 (113) Q Consensus 69 ~~d~~~~l~~~L~~LDt~GCt~~Lpid---p~~~~vg~f~Vvg--Gc~c~ 113 (113) ++.-.+.=+.+|++| |.. .|+- -+|+-.|-|---+ |=.-. T Consensus 76 gsaftdddraslral----cga-vppvqasaegtrqgpfpkerpvgprvd 120 (236) T protein:vir:78 76 GSAFTDDDRASLRAL----CGA-VPPVQASAEGTRQGPFPKERPVGPRVD 120 (236) T ss_pred ccccccchhhHHHHH----hcc-CCcccccccccccCCCccccCCCCccc Confidence 444344445556665 322 3321 0111122221100 00000 No 7 >protein:vir:8104 Length: 170 # NCBI annotation: gp8 # Family: family:all:3238 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817685;genbank:gi:29566116;genbank:GeneID:1259310 Probab=2.41 E-value=26 Score=12.83 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=29.9 Q ss_pred CccccchhHHHHHHHhhHHHHHhcCCCCCH--H---HHHHHHHHHHHHHHh-hcCCceeecccCCcccccceeecCchHH Q lcl|NC_010495. 1 MTITTTDASGILCLVSSISECLELNYPNDE--C---RQNAIMLWASILISA-NTAGRYVTSQSAPSGASQSFAYGSKPWV 74 (113) Q Consensus 1 ~~~~~~~~s~il~qvnsi~~CLd~~agyd~--~---~q~LI~~Yav~Lla~-~~~~R~IsSQ~APSGASrSF~Y~~d~~~ 74 (113) +++| -++||++ + ..-+|+ .++- +...+.+.-+..=++.+-||.|++.+.. T Consensus 97 V~VT-------------------~tHGy~~~~apd~~~~vi~-----~~a~r~~~s~~~~~l~~~~~~~vs~~~~~~~~s 152 (170) T protein:vir:81 97 IVVT-------------------ATHGFTETEAADWRRAVVQ-----LVGRRAQTSRPSADLKRKKVDDVEYEWFETAVS 152 (170) T ss_pred EEEE-------------------EEeCCCCCccchHHHHHHH-----HHHHHhhccCCcccceeeeccceeeeecccccc Confidence 3332 2358864 3 322332 2221 1111111112223455568888876655 Q ss_pred HHHHHHHhhccccccccCCcCC Q lcl|NC_010495. 75 ALYNQMKLLDTAGCTGDLVEDP 96 (113) Q Consensus 75 ~l~~~L~~LDt~GCt~~Lpidp 96 (113) -.-++-+.||.+= |.+-| T Consensus 153 ~~~~~~~iL~~Yr----l~~~p 170 (170) T protein:vir:81 153 VDAELSAVFSPFR----ILPSP 170 (170) T ss_pred cCHHHHHhhhhcc----cCCCC Confidence 5555566777662 32223 No 8 >protein:vir:2106 Length: 430 # NCBI annotation: coat protein # Family: family:all:1412 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:NP_059630;genbank:gi:9635538;genbank:GeneID:1262831 Probab=1.76 E-value=23 Score=13.07 Aligned_cols=110 Identities=10% Similarity=0.022 Sum_probs=51.9 Q ss_pred CccccchhHHHHHHH-hhHHHHHhcCCCCCHHHHHHHHHHHHH------------------HHHhhcCCceeecccCCcc Q lcl|NC_010495. 1 MTITTTDASGILCLV-SSISECLELNYPNDECRQNAIMLWASI------------------LISANTAGRYVTSQSAPSG 61 (113) Q Consensus 1 ~~~~~~~~s~il~qv-nsi~~CLd~~agyd~~~q~LI~~Yav~------------------Lla~~~~~R~IsSQ~APSG 61 (113) .+++.-+.+ +++.- +-|++-+.+= ..+-.+.|+.+|... +-..++..+++..+++|.+ T Consensus 87 ~~~~~kEl~-~~~~~er~l~pAm~~L--A~~Vd~dl~~~~~~~~~~v~~~~~~t~~~~~~~~~~~A~a~~~L~~~~vP~~ 163 (430) T protein:vir:21 87 FQLRADDLR-DETAYRRRIQSAARKL--ANNVELKVANMAAEMGSLVITSPDAIGTNTADAWNFVADAEEIMFSRELNRD 163 (430) T ss_pred EEeehhHhc-ChhhHHHHHHHHHHHH--HHHHHHHHHHHhhhhhhccccccCCCCCCCCcchhhHHHHHHHHHHhcCCCC Confidence 233322211 11110 1122222211 122233455554331 2233445677899999998 Q ss_pred cccceeecCchHHHHHHHHHhhccccccc-cCCcC-CCCccceee-eec--CcccCC Q lcl|NC_010495. 62 ASQSFAYGSKPWVALYNQMKLLDTAGCTG-DLVED-PDGSGKPWF-AVV--RGSKCK 113 (113) Q Consensus 62 ASrSF~Y~~d~~~~l~~~L~~LDt~GCt~-~Lpid-p~~~~vg~f-~Vv--gGc~c~ 113 (113) .=|..=|++..-.+|-+.|..+...|=.+ +.-.+ --+..+++| |+- ..+.=- T Consensus 164 ~~R~~~~~p~~~~~l~~~l~~~~~~~~~~~~A~r~g~i~r~~~Gfd~~~~s~~~~~~ 220 (430) T protein:vir:21 164 MGTSYFFNPQDYKKAGYDLTKRDIFGRIPEEAYRDGTIQRQVAGFDDVLRSPKLPVL 220 (430) T ss_pred CCcEEEeChHHHHHHhhhhccccccccchhHHHhhcccccccchhhhhhhcCCcccc Confidence 88988888777778888888887665322 11111 112234455 342 222211 No 9 >protein:vir:79640 Length: 134 # NCBI annotation: gp38 # Family: family:all:5122 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285527;genbank:gi:148734510;genbank:GeneID:5219998 Probab=1.34 E-value=49 Score=11.28 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=45.4 Q ss_pred Cc--------------cccchhHHHHHHHhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhcC-----------Cceeec Q lcl|NC_010495. 1 MT--------------ITTTDASGILCLVSSISECLELNYPNDECRQNAIMLWASILISANTA-----------GRYVTS 55 (113) Q Consensus 1 ~~--------------~~~~~~s~il~qvnsi~~CLd~~agyd~~~q~LI~~Yav~Lla~~~~-----------~R~IsS 55 (113) |. ....|...|--..+.-..=++ ..++.+..+..+.+|.+=||.++++ .++|.| T Consensus 1 m~d~~~ve~Fr~l~PeF~~vpde~l~~~~~~A~~~i~-~~~~g~~~~~al~lltAHLl~l~~~~~~~g~~~~~~~grv~s 79 (134) T protein:vir:79 1 MNDIEILEQIYKIAPAFKKVDPELIQAWIELAKDFVC-EKHFKDKYFRAVALYTLHLMTLDGAMKQESESVESYSHRIAS 79 (134) T ss_pred CchHHHHHHHHHhccccccCCHHHHHHHHHHhhhhhc-CCCCChHHHHHHHHHHHHHHhhcccccccccccccccchhhh Confidence 11 001122222111222122222 2356777777788888888865321 223332 Q ss_pred -c---------cCCcccccceeecCchHHHHHHHHHhhccccccccCCcCCCCccceee--eecCccc Q lcl|NC_010495. 56 -Q---------SAPSGASQSFAYGSKPWVALYNQMKLLDTAGCTGDLVEDPDGSGKPWF--AVVRGSK 111 (113) Q Consensus 56 -Q---------~APSGASrSF~Y~~d~~~~l~~~L~~LDt~GCt~~Lpidp~~~~vg~f--~VvgGc~ 111 (113) - ..|++.+-+|-|..-.|=++|-.|+.+ +. .++|.. .+.|||. T Consensus 80 sst~G~vSvS~a~ps~~~~~~Wl~~TpYGq~y~~L~k~----~~---------GGf~~~t~~~~~~~r 134 (134) T protein:vir:79 80 FSLTGEFSQTFSKVSDDTSGNTLRQTPWGKMYEVLNKK----KG---------GGFGLTTAFHRRCSR 134 (134) T ss_pred hhhhcceeeeccCcccchhHHHHhcCHHHHHHHHHHHh----hc---------cchHhhhhccccCCC Confidence 2 234444445556667777888888874 11 122222 2356676 No 10 >protein:vir:99546 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:503 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039796;genbank:gi:126011046;genbank:GeneID:4818241 Probab=1.10 E-value=59 Score=10.84 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=35.4 Q ss_pred CCcccccceee-cCchHHHHHHHHHhhccccccccCCcCC---------CCccceeeeec--CcccCC Q lcl|NC_010495. 58 APSGASQSFAY-GSKPWVALYNQMKLLDTAGCTGDLVEDP---------DGSGKPWFAVV--RGSKCK 113 (113) Q Consensus 58 APSGASrSF~Y-~~d~~~~l~~~L~~LDt~GCt~~Lpidp---------~~~~vg~f~Vv--gGc~c~ 113 (113) ---|=|.|..- +.+.++.+++.|+.|+..--.-++|.++ +|..++.+..+ -|..=+ T Consensus 1 ~~~~~~~~~k~~~~~~~~~~~~~l~~l~~~~v~vGi~~~~~y~~~~~~~dG~~va~IA~~~EfG~~i~ 68 (200) T protein:vir:99 1 MKKGFSKSNSVAAPLKHFQMLKQFDALKGKTVQAGWFETDRYPAKEGETIGPLVAKIARQLEFGGVIN 68 (200) T ss_pred CCcCcceeeeeecchHHHHHHHHHHHhhCCeEEEEEcCCCCcCCcccccccchHHHHHhHHHcCCeec Confidence 55688888888 5579999999999999887777776432 12233332222 233211 Done!