Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 0305phi8-36 | Genbank acc : NC_009760 | Aclame index mge :1874

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 246

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	26	lcl\|Aclame:protein:vir:79928\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	22	lcl\|Aclame:protein:vir:79772\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	17	lcl\|Aclame:protein:vir:79769\|NCBI_annot:terminase	Blast (e-value=0)
MTP	NOT FOUND
Sheath	40	lcl\|Aclame:protein:vir:79798\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	39	lcl\|Aclame:protein:vir:79782\|NCBI_annot:virion	HHsearch (proba=95.56%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	99	lcl\|Aclame:protein:vir:79889\|NCBI_annot:low	HHsearch (proba=85.99%)
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79928 protein:vir:108211 protein:vir:96833	0305phi8-36 Giles EW	100 % 17 % 17 %
Portal	protein:vir:79772 protein:vir:95254 protein:vir:6240	0305phi8-36 Felix 01 phi-BT1	100 % 16 % 15 %
TermL	protein:vir:79769 protein:vir:79447 protein:vir:78016	0305phi8-36 P74-26 P23-45	100 % 20 % 20 %
Sheath	protein:vir:79798 protein:vir:79092 protein:vir:107865	0305phi8-36 phiE255 BcepMu	100 % 17 % 17 %
Tc1	protein:vir:80105	B054	13 %
Hc3	protein:vir:93631	Bcep22	18 %