Query lcl|Aclame:protein:vir:79782|NCBI_annot:virion structural protein|genbank:acc:YP_001429629;genbank:gi:156564119;genbank:GeneID:5525547 Match_columns 226 No_of_seqs 4 out of 7 Neff 2.2 Searched_HMMs 1612 Date Tue Dec 3 01:00:33 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_59 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_59_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:80105 Length: 162 95.6 0.00064 4E-07 38.1 10.6 158 9-201 1-162 (162) 2 protein:vir:195 Length: 115 # 8.5 7.7 0.0048 15.7 7.1 114 16-164 1-115 (115) 3 protein:vir:80371 Length: 115 6.2 11 0.0067 14.9 3.4 72 1-106 22-115 (115) 4 protein:vir:1387 Length: 116 # 3.5 19 0.012 13.5 7.3 116 13-178 1-116 (116) 5 protein:vir:100598 Length: 516 2.6 15 0.0093 14.1 0.9 75 120-226 1-82 (516) 6 protein:vir:5665 Length: 511 # 2.1 24 0.015 13.0 1.4 66 142-226 1-76 (511) 7 protein:vir:4834 Length: 123 # 1.4 47 0.029 11.4 4.8 62 1-68 62-123 (123) 8 protein:vir:6215 Length: 109 # 1.1 58 0.036 10.9 6.3 77 14-104 1-109 (109) 9 protein:vir:5001 Length: 123 # 1.1 61 0.038 10.8 4.6 62 1-68 62-123 (123) 10 protein:vir:101806 Length: 516 0.9 69 0.043 10.5 1.1 74 120-226 1-82 (516) No 1 >protein:vir:80105 Length: 162 # NCBI annotation: gp13 # Family: family:all:2729 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468717;genbank:gi:157325297;genbank:GeneID:5601796 Probab=95.56 E-value=0.00064 Score=38.08 Aligned_cols=158 Identities=13% Similarity=0.135 Sum_probs=95.4 Q ss_pred cccccCcccHHHHHHHHHHHHhhhccccCCeeeccccccccccccceeEEEEeeeccccccccccccCcccccCCCCCCC Q lcl|Aclame:pro 9 MQTAEGSLDYDQFTDEINRLLRLAWGDDWGTFTEDEPTGTDGNDVPVPVITFDLESRKRTKYGVKSLEPVHFDTIPDPEN 88 (226) Q Consensus 9 ~q~Angsidyd~ftd~i~~LL~~AWgndwG~ft~dePt~td~~~v~~PvIiy~l~~re~tk~~~k~IKPrq~~ti~~~~~ 88 (226) |-.-+|--||+-++++|-..|+.-= + +=...++ ...++-=.||-|||.+-. | -||+. T Consensus 1 ~~~~~~~~~~~~lv~~ii~~i~~~~-~-gl~vI~~---~~~g~~p~yPF~TY~v~~------------p----yi~~~-- 57 (162) T protein:vir:80 1 MPNDTAGYDYGKLVKTLINAVNELS-G-GLQLIES---SSGGEQPEYPFCQYTITS------------P----YIAIS-- 57 (162) T ss_pred CCCccccccHHHHHHHHHHHHHhhh-c-ceeEEEc---cCCCCCCCCCeEEEEEec------------C----ccccC-- Confidence 6668999999999999987775522 2 1123333 244555569999998752 1 11110 Q ss_pred ChhheEeeeeeEEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHhccchheeeeccc-cchhhhhhhhhcccchhee Q lcl|Aclame:pro 89 PAHSMKLYRQWFDVEMVFRVFHNTNRAARLLMEEFEDFLFTYKSHLKHIGISELIFQEEK-KPTVESRWSQKLAARTLLY 167 (226) Q Consensus 89 ~~~a~kvY~Q~FD~~V~F~i~~~tn~~a~~Lm~efee~l~TfTgflK~nGv~Ei~F~ke~-td~~~~n~~~~l~~r~L~Y 167 (226) ++ .+=|.-|||.+-|.+|++++.+|-.|.+.+.+. |+..++..+++++.+ ...++.+.++...--..-| T Consensus 58 -~~--~~~~e~~~~~isi~~~S~~~~eAl~la~~l~~~-------f~~~~~~~~~~~~~gIvvvdv~~~~~R~~~~~~~y 127 (162) T protein:vir:80 58 -PD--IVEGEQFEIVISLTWRALSGHQALNLANITNKY-------FRSQKGRFFMQENGGIVVVSVQNSGLRDTFISIEY 127 (162) T ss_pred -Cc--ccCCcceEEEEEEEEEeCCHHHHHHHHHHHHHH-------hhcCCceeeeeecCcEEEEecCCCccceeEeeeee Confidence 00 012347899999999999999999999998765 556677777777655 4445555544443333333 Q ss_pred eeeee---hheeeeecceEEEeEEEEeeeccCCchhh Q lcl|Aclame:pro 168 LVRIE---RITTVRSNNFVEIETTVKDAKITNPPMDG 201 (226) Q Consensus 168 f~RfE---riTtv~vn~~~~Ie~v~~~~ki~n~~~~~ 201 (226) --|+. ++...| +--++|++. ...+|||+-..| T Consensus 128 erR~GFD~~~Rv~r-~~e~~~~tI-e~i~~~~~~~g~ 162 (162) T protein:vir:80 128 ERSAGIDLRLRVVD-SYSSEIQEI-DNISFTNENLGG 162 (162) T ss_pred eeeecceEEEEEee-cccccccee-eeecccCcccCC Confidence 21111 111111 222344433 457899999888 No 2 >protein:vir:195 Length: 115 # NCBI annotation: Gp11 # Family: family:all:896 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037705;genbank:gi:9634170;genbank:GeneID:1262540 Probab=8.51 E-value=7.7 Score=15.71 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=57.7 Q ss_pred ccHHHHHHHHHHHHhhhccccCCeeecccccccccc-ccceeEEEEeeeccccccccccccCcccccCCCCCCCChhheE Q lcl|Aclame:pro 16 LDYDQFTDEINRLLRLAWGDDWGTFTEDEPTGTDGN-DVPVPVITFDLESRKRTKYGVKSLEPVHFDTIPDPENPAHSMK 94 (226) Q Consensus 16 idyd~ftd~i~~LL~~AWgndwG~ft~dePt~td~~-~v~~PvIiy~l~~re~tk~~~k~IKPrq~~ti~~~~~~~~a~k 94 (226) |+= +.|..||...= ++.=|----|.+.++. .+++|-|+|.+-+=- |.. ++ +| |+ .. T Consensus 1 M~e----~~i~~lL~~l~--~gRvyp~~aP~~~~~~~~~~~Pyiv~q~vsg~----------p~~--~L-~G--~~--~~ 57 (115) T protein:vir:19 1 MNE----DNIYALLSPLA--EGRVYPYVAPLGSDGKPSVSPPWIIFSIVDDV----------SAD--VL-CG--QA--ES 57 (115) T ss_pred Cch----hHHHHHHhhhc--CcccceeeccCCCCCCccccCCeEEEEeccCc----------ccc--cc-cC--CC--cc Confidence 432 34555553221 2233333456666554 578999999875421 211 11 12 11 11 Q ss_pred eeeeeEEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHhccchheeeeccccchhhhhhhhhcccch Q lcl|Aclame:pro 95 LYRQWFDVEMVFRVFHNTNRAARLLMEEFEDFLFTYKSHLKHIGISELIFQEEKKPTVESRWSQKLAART 164 (226) Q Consensus 95 vY~Q~FD~~V~F~i~~~tn~~a~~Lm~efee~l~TfTgflK~nGv~Ei~F~ke~td~~~~n~~~~l~~r~ 164 (226) .+-|-..+|..|..+|+.|++..+..|..-. +++.++. +.-++|+.--+.+...-.++ T Consensus 58 ------~~~vQIDvyA~t~~~A~~l~~~i~~Al~~~~-p~~~~~~-----~~ye~dt~lyR~s~d~~V~~ 115 (115) T protein:vir:19 58 ------RVSVQVDVYSTSIAESRSLRDLVLASLEPLT-PTEVVKI-----PGYEPDYRLYRATLDFKVTP 115 (115) T ss_pred ------ceEEEEEEeeCChHHHHHHHHHHHHHhhhcC-CEEecCC-----CCcccchhceeeEEEEEecC Confidence 2456677899999999999999999996321 2222221 11122222222222222222 No 3 >protein:vir:80371 Length: 115 # NCBI annotation: gp11 # Family: family:all:2712 # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111090;genbank:gi:134288622;genbank:GeneID:4960618 Probab=6.23 E-value=11 Score=14.92 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=28.3 Q ss_pred Cccc-------------------cccccccccCcccHHHH---HHHHHHHHhhhccccCCeeeccccccccccccceeEE Q lcl|Aclame:pro 1 MANE-------------------VRRGMQTAEGSLDYDQF---TDEINRLLRLAWGDDWGTFTEDEPTGTDGNDVPVPVI 58 (226) Q Consensus 1 ma~e-------------------~~~~~q~Angsidyd~f---td~i~~LL~~AWgndwG~ft~dePt~td~~~v~~PvI 58 (226) .|.+ +.-++--.-|++-+|-+ -++-+.|-+++=+ --+..++. +++ T Consensus 22 vAp~~~~~pyivy~rvsga~e~~L~G~ag~~~~~~QID~yA~T~~ea~~La~~v~d----~~~~~~~~--------~~v- 88 (115) T protein:vir:80 22 VAPEKAPARYFVVTRVHGALDMALAGPTGGRSGSYQIDCYAPTFTDADRLADLAVD----RAMSVQDR--------FSV- 88 (115) T ss_pred eccccCcCCeEEEeecCCCccccccCCCCCceeEEEEeeecCCHHHHHHHHHHHHH----hhhCCccc--------cce- Confidence 1110 12222112222222221 1122222111111 00001111 111 Q ss_pred EEeeeccccccccccccCcccccCCCCCCCChhheEeeeeeEEEEEEE Q lcl|Aclame:pro 59 TFDLESRKRTKYGVKSLEPVHFDTIPDPENPAHSMKLYRQWFDVEMVF 106 (226) Q Consensus 59 iy~l~~re~tk~~~k~IKPrq~~ti~~~~~~~~a~kvY~Q~FD~~V~F 106 (226) +| .+++||-|-+- ++|||-++|++|+| T Consensus 89 -----------g~--------l~e~pd~Ye~D--T~l~Rvs~dv~i~f 115 (115) T protein:vir:80 89 -----------GG--------VDELPDDYSAD--TGLFRVSLELSVEF 115 (115) T ss_pred -----------ec--------ccCCCcccccc--cceEEEEEEEEEeC Confidence 01 35666666554 89999999999999 No 4 >protein:vir:1387 Length: 116 # NCBI annotation: Gp10 protein # Family: family:all:517 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612839;genbank:gi:20065973;genbank:GeneID:935788 Probab=3.49 E-value=19 Score=13.51 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=56.5 Q ss_pred cCcccHHHHHHHHHHHHhhhccccCCeeeccccccccccccceeEEEEeeeccccccccccccCcccccCCCCCCCChhh Q lcl|Aclame:pro 13 EGSLDYDQFTDEINRLLRLAWGDDWGTFTEDEPTGTDGNDVPVPVITFDLESRKRTKYGVKSLEPVHFDTIPDPENPAHS 92 (226) Q Consensus 13 ngsidyd~ftd~i~~LL~~AWgndwG~ft~dePt~td~~~v~~PvIiy~l~~re~tk~~~k~IKPrq~~ti~~~~~~~~a 92 (226) =-.|++ .+.|.+.|. .-.+.+..--+ ..+...|.|||..-.-++..++ | ....+ T Consensus 1 ~~~m~I---~~~i~~~Lk----~i~ipV~~~~y----~~~~~~~~Itf~~y~e~~~~ya-------------D--d~e~~ 54 (116) T protein:vir:13 1 MEDFDI---IALVYECLE----CLNVPVIEGWY----DEELNKTHITVHEYLEQDESFE-------------D--DEARE 54 (116) T ss_pred CCccch---hHHHHHHHh----hcCCeeeeccc----CCCCccceEEEEeeecCCCccc-------------C--Ceeee Confidence 113442 233444432 11223333211 1122357788776554444433 1 11223 Q ss_pred eEeeeeeEEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHhccchheeeeccccchhhhhhhhhcccchheeeeeee Q lcl|Aclame:pro 93 MKLYRQWFDVEMVFRVFHNTNRAARLLMEEFEDFLFTYKSHLKHIGISELIFQEEKKPTVESRWSQKLAARTLLYLVRIE 172 (226) Q Consensus 93 ~kvY~Q~FD~~V~F~i~~~tn~~a~~Lm~efee~l~TfTgflK~nGv~Ei~F~ke~td~~~~n~~~~l~~r~L~Yf~RfE 172 (226) ++.| +--.|||+..-.+.+|-+.-.+.| |++|.+-.- ..++-+.-.. --|+-+||+ T Consensus 55 t~~~-------iQVDI~sk~~~~~~~l~~~V~~lM-------k~~GF~r~~----~~d~ye~dt~------iyhk~~RF~ 110 (116) T protein:vir:13 55 EEHN-------IQIDVWSKDSLEAFKLKKAIKKLL-------KKNNFYFDS----SEDFYETKTR------IYHKGLRFS 110 (116) T ss_pred EEEE-------EEEEEeecCCccHHHHHHHHHHHH-------HHcCCEeee----cCCCccchhh------hhhhhhhhe Confidence 4444 445899999988888888877664 677765332 1222221111 135666776 Q ss_pred hheeee Q lcl|Aclame:pro 173 RITTVR 178 (226) Q Consensus 173 riTtv~ 178 (226) -++++. T Consensus 111 y~~el~ 116 (116) T protein:vir:13 111 YISEIS 116 (116) T ss_pred eeeecC Confidence 666555 No 5 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=2.56 E-value=15 Score=14.13 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHHHhccchheeeeccccchhhhhhhh--hcccchheeeeeeehheeeeecceEEEeEEEEeeeccCC Q lcl|Aclame:pro 120 MEEFEDFLFTYKSHLKHIGISELIFQEEKKPTVESRWSQ--KLAARTLLYLVRIERITTVRSNNFVEIETTVKDAKITNP 197 (226) Q Consensus 120 m~efee~l~TfTgflK~nGv~Ei~F~ke~td~~~~n~~~--~l~~r~L~Yf~RfEriTtv~vn~~~~Ie~v~~~~ki~n~ 197 (226) |+ +|+=-|. +.+..+.......++ .+++-| ..-+ -.++..+-.+|+ T Consensus 1 ~~-----------~~~lf~f----~~~~d~~~~~~~~~~~~~s~~~p------------~~~D-----Ga~~i~~~~~~~ 48 (516) T protein:vir:10 1 MK-----------FLDLFKF----WDRVDQNEYDERLKQGHESIATP------------KKDD-----GATEIEAREGES 48 (516) T ss_pred CC-----------chHhccc----ccchhhHHHHhhhcCCCCcccCC------------CCcc-----CceeeecCcccc Confidence 11 0100000 011111100000000 000000 0011 123344557899 Q ss_pred chhhhhhhhhccc-----cchhHHhhhhhccccC Q lcl|Aclame:pro 198 PMDGVRETIVGSK-----MDPMIAQYRSQMKITE 226 (226) Q Consensus 198 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 226 (226) ++.|+--+.+|.- -+++|..||+-+..-| T Consensus 49 ~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~pE 82 (516) T protein:vir:10 49 SYNALMQQFFGIDNNISGTKDLINTYRQLTNNPE 82 (516) T ss_pred cccceeeeeecccCccccHHHHHHHHHHhhhccc Confidence 9999987777642 3579999999999888 No 6 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=2.10 E-value=24 Score=13.01 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=27.5 Q ss_pred eee-eccccchhhhhhhhh--cccchheeeeeeehheeeeecceEEEeEEEEeeeccCCchhhh-------hhhhhcccc Q lcl|Aclame:pro 142 LIF-QEEKKPTVESRWSQK--LAARTLLYLVRIERITTVRSNNFVEIETTVKDAKITNPPMDGV-------RETIVGSKM 211 (226) Q Consensus 142 i~F-~ke~td~~~~n~~~~--l~~r~L~Yf~RfEriTtv~vn~~~~Ie~v~~~~ki~n~~~~~~-------~~~~~~~~~ 211 (226) +.| .++.....++..+.+ +.+.+ ..-+--.+|| +-.+||-+.|+ -+.-.-+| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p------------~~~DGa~~i~-----~~~~~~~~~g~~~~~~~~~~~~~~~~- 62 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAP------------DNVDGAKEIH-----TNLLAPQLGHAIIPSDAQSEGTIPVK- 62 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCC------------CCCCCceEEe-----cccccceecceeccccccccCccchH- Confidence 111 111111111111111 01100 1112222333 35677777775 11111124 Q ss_pred chhHHhhhhhccccC Q lcl|Aclame:pro 212 DPMIAQYRSQMKITE 226 (226) Q Consensus 212 ~~~~~~~~~~~~~~~ 226 (226) -+|.+||+-+..-| T Consensus 63 -eLI~~YR~ma~~pE 76 (511) T protein:vir:56 63 -ELIKSYRALAEYHE 76 (511) T ss_pred -HHHHHHHHHhhccc Confidence 59999999999888 No 7 >protein:vir:4834 Length: 123 # NCBI annotation: ORF30 # Family: family:all:1192 # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038331;genbank:gi:9634657;genbank:GeneID:1262620 Probab=1.39 E-value=47 Score=11.38 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=38.0 Q ss_pred CccccccccccccCcccHHHHHHHHHHHHhhhccccCCeeeccccccccccccceeEEEEeeeccccc Q lcl|Aclame:pro 1 MANEVRRGMQTAEGSLDYDQFTDEINRLLRLAWGDDWGTFTEDEPTGTDGNDVPVPVITFDLESRKRT 68 (226) Q Consensus 1 ma~e~~~~~q~Angsidyd~ftd~i~~LL~~AWgndwG~ft~dePt~td~~~v~~PvIiy~l~~re~t 68 (226) ..+||.==- +.|.+.|+++|--+|.++|.. |.|=-..++.+ +.+.+=.=+..+|++...+.- T Consensus 62 ~~vEVQIFy-k~~~~~di~~~Ei~L~~~~~~---~~W~i~~s~~h--~~DPdT~Q~t~t~y~~k~~~i 123 (123) T protein:vir:48 62 DRVEVQIFY-KADIDFDIEAFEMELLKFLKS---EHYSITDMREH--SIDPDTLQITAVFFVAFDKLI 123 (123) T ss_pred EEEEEEEEe-ecCCCcCHHHHHHHHHHHHhh---CCceEEecCCC--cCCCCCCeEEEEEEEEecccC Confidence 455554332 367778899998888888765 44522223222 333444467788998887765 No 8 >protein:vir:6215 Length: 109 # NCBI annotation: hypothetical protein # Family: family:all:10885 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852595;genbank:gi:31415855;genbank:GeneID:1489213 Probab=1.12 E-value=58 Score=10.88 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=42.2 Q ss_pred CcccHHHHHHHHHHHHhhhccccCC-eeeccccccccccccceeEEEEeeec--c--------------ccc---ccccc Q lcl|Aclame:pro 14 GSLDYDQFTDEINRLLRLAWGDDWG-TFTEDEPTGTDGNDVPVPVITFDLES--R--------------KRT---KYGVK 73 (226) Q Consensus 14 gsidyd~ftd~i~~LL~~AWgndwG-~ft~dePt~td~~~v~~PvIiy~l~~--r--------------e~t---k~~~k 73 (226) =+|+||+|-..|+.+ | ...+| --.....||-|+|+--. + |++ ++-=+ T Consensus 1 M~i~Fe~lr~~Lk~~---------g~~V~RD----~ap~~t~YPyivYs~v~e~~k~AS~kv~~~~~~YQvSl~T~GtE~ 67 (109) T protein:vir:62 1 MQINFEQLRSLMKKS---------GIPVSRD----NAPTGIDYPYIVYEFVNEQHKRASNKVLKDMPLYQIAVITNGTEK 67 (109) T ss_pred CcccHHHHHHHHHhc---------CCceeec----cCCCCCCCceEEEEeecCceeeeccceEeecceeEEEEeeccchh Confidence 458999999999887 4 55666 23334559999997422 1 121 11112 Q ss_pred ccCc------------ccccCCCCCCCChhheEeeeeeEEEEE Q lcl|Aclame:pro 74 SLEP------------VHFDTIPDPENPAHSMKLYRQWFDVEM 104 (226) Q Consensus 74 ~IKP------------rq~~ti~~~~~~~~a~kvY~Q~FD~~V 104 (226) ++.| .+|.-|+--+++.--+-.|--+ -||= T Consensus 68 dl~~l~k~f~~~~vpfs~f~gIqgDENDdTiTnfyTyV-rcie 109 (109) T protein:vir:62 68 DYEPLKAVFNEVGVSYSQFDGMDYDENDDTITQFITYV-RCIQ 109 (109) T ss_pred HHHHHHHHHhhcCCccccccccCCCCCcchheeeeeee-EEeC Confidence 2222 1255566666666555555432 2221 No 9 >protein:vir:5001 Length: 123 # NCBI annotation: putative tail component protein # Family: family:all:1192 # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049975;genbank:gi:9632947;genbank:GeneID:1262110 Probab=1.06 E-value=61 Score=10.77 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=36.8 Q ss_pred CccccccccccccCcccHHHHHHHHHHHHhhhccccCCeeeccccccccccccceeEEEEeeeccccc Q lcl|Aclame:pro 1 MANEVRRGMQTAEGSLDYDQFTDEINRLLRLAWGDDWGTFTEDEPTGTDGNDVPVPVITFDLESRKRT 68 (226) Q Consensus 1 ma~e~~~~~q~Angsidyd~ftd~i~~LL~~AWgndwG~ft~dePt~td~~~v~~PvIiy~l~~re~t 68 (226) ..+||.==- +.+.+-|.++|-.+|.++|.. |.|=-+.+..++ .+-+-.=...+|++.+.++= T Consensus 62 ~~VeIQIFY-k~~~~~di~~~E~~L~~~f~~---ngW~i~~s~~h~--~DPdT~Q~~~t~y~~k~~~i 123 (123) T protein:vir:50 62 ERVEIQIFY-KADIDFDIEAFETELLKFLTS---EHYSIIDMREHS--IDPDTLQLTAVFFVALDKII 123 (123) T ss_pred EEEEEEEEe-ecCCCCCHHHHHHHHHHHHhh---CCceEEecCCCc--CCCCCCeEEEEEEEEeeecC Confidence 444443222 244556889998888887754 456444443333 33334567788888887765 No 10 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=0.91 E-value=69 Score=10.46 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHHHhccchheee-eccccchhhhhhh--hhcccchheeeeeeehheeeeecceEEEeEEEEeeeccC Q lcl|Aclame:pro 120 MEEFEDFLFTYKSHLKHIGISELIF-QEEKKPTVESRWS--QKLAARTLLYLVRIERITTVRSNNFVEIETTVKDAKITN 196 (226) Q Consensus 120 m~efee~l~TfTgflK~nGv~Ei~F-~ke~td~~~~n~~--~~l~~r~L~Yf~RfEriTtv~vn~~~~Ie~v~~~~ki~n 196 (226) |+ +|+=- -| .+..+.......+ ..+++-| ..-+ -.++..+-.+| T Consensus 1 ~~-----------~~~lf-----~f~~~~d~~~~~~~~~~~~~s~~~p------------~~~d-----Ga~~i~~~~~~ 47 (516) T protein:vir:10 1 MK-----------FLDLF-----KFWDRVDQNEYDERLKLGHESIATP------------KKDD-----GATEIETREGE 47 (516) T ss_pred CC-----------chHhc-----ccccchhhhHHhhhhcCCcCcccCC------------CCCC-----CceeeecCCCc Confidence 10 00000 01 0000000000000 0000000 0001 01223344678 Q ss_pred Cchhhhhhhhhccccc-----hhHHhhhhhccccC Q lcl|Aclame:pro 197 PPMDGVRETIVGSKMD-----PMIAQYRSQMKITE 226 (226) Q Consensus 197 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 226 (226) |+..|+--+.+|.--+ -+|..||+-+..-| T Consensus 48 ~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pE 82 (516) T protein:vir:10 48 ATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPE 82 (516) T ss_pred ccccceeeeeeccccccchHHHHHHHHHHHhhccc Confidence 8888887666664433 38999999998888 Done!