BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:102358|NCBI_annot:putative terminase large subunit|genbank:acc:YP_529553;genbank:gi:90592639;genbank:GeneID :3974490 (322 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: pu... 669 0.0 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 262 4e-72 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 262 5e-72 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 259 2e-71 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 56 6e-10 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 51 2e-08 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 51 2e-08 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 45 1e-06 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 45 1e-06 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 42 7e-06 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 39 7e-05 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 39 7e-05 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 39 1e-04 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 38 2e-04 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 38 2e-04 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 38 2e-04 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 26 0.81 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 25 1.1 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 25 1.1 gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: OR... 25 1.1 gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hyp... 25 1.1 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 24 2.8 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 23 4.9 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 23 4.9 >gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529553;genbank:gi:90592639;genbank:GeneID :3974490 Length = 322 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/322 (100%), Positives = 322/322 (100%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGNMLCEEVLSL 60 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGNMLCEEVLSL Sbjct: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGNMLCEEVLSL 60 Query: 61 NSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDTA 120 NSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDTA Sbjct: 61 NSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDTA 120 Query: 121 DEGADYLCSIVYGVYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGGRA 180 DEGADYLCSIVYGVYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGGRA Sbjct: 121 DEGADYLCSIVYGVYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGGRA 180 Query: 181 FARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYYKA 240 FARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYYKA Sbjct: 181 FARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYYKA 240 Query: 241 MVSYQREGKNKHDDACFEEGTQISTLFGNKSIEKIKEGGYVFTPFGLRRVLWSGCTGEKE 300 MVSYQREGKNKHDDACFEEGTQISTLFGNKSIEKIKEGGYVFTPFGLRRVLWSGCTGEKE Sbjct: 241 MVSYQREGKNKHDDACFEEGTQISTLFGNKSIEKIKEGGYVFTPFGLRRVLWSGCTGEKE 300 Query: 301 TINKLGLKATRNHKVFSYINGL 322 TINKLGLKATRNHKVFSYINGL Sbjct: 301 TINKLGLKATRNHKVFSYINGL 322 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 262 bits (669), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 137/257 (53%), Positives = 173/257 (67%), Gaps = 12/257 (4%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGN-MLCEEVLS 59 MLSRLE GGKIII MTRW S+DLAGRAL + G +V+HIN KA E N MLC++VL+ Sbjct: 131 MLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTNEMLCDDVLT 190 Query: 60 LNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDT 119 L YK KV+ MG DIASANYQQEPID+KG LY+ F+TY+ + I Y DT Sbjct: 191 LEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYNARSE-------YNKIWNYCDT 243 Query: 120 ADEGADYLCSIVYG-VYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGG 178 AD G DYLCSIV+G + VLD++YT++ ME TE A N VN + IE N+GG Sbjct: 244 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNNGG 303 Query: 179 RAFARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYY 238 R+FAR+V+ ++ K ++ F Q NK ARI SNS W+ +H+ FP +WR R+ +YY Sbjct: 304 RSFARSVRDKIQGKVAC---AVEDFFQGNNKEARIYSNSYWIEQHVRFPNDWRTRFPEYY 360 Query: 239 KAMVSYQREGKNKHDDA 255 +AM +YQREGKNKHDDA Sbjct: 361 QAMTTYQREGKNKHDDA 377 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 262 bits (669), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 142/282 (50%), Positives = 182/282 (64%), Gaps = 12/282 (4%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGN-MLCEEVLS 59 MLSRLE GGKIII MTRW S+DLAGRAL + G +V+HIN KA E N MLC++VL+ Sbjct: 191 MLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTNEMLCDDVLT 250 Query: 60 LNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDT 119 L YK KV+ MG DIASANYQQEPID+KG LY+ F+TY+ + I Y DT Sbjct: 251 LEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYN-------ARSEYKKIWNYCDT 303 Query: 120 ADEGADYLCSIVYG-VYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGG 178 AD G DYLCSIV+G + VLD++YT++ ME TE A N VN + IE N+GG Sbjct: 304 ADTGKDYLCSIVWGETTDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNNGG 363 Query: 179 RAFARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYY 238 R+FAR+V+ ++ K ++ F Q NK ARI SNS W+ +H+ FP +WR R+ +YY Sbjct: 364 RSFARSVRDKIQGKVAC---AVEDFFQGNNKEARIYSNSYWIEQHVRFPNDWRTRFPEYY 420 Query: 239 KAMVSYQREGKNKHDDACFEEGTQISTLFGNKSIEKIKEGGY 280 +AM +YQREGKNKHDDA T+ K+ K +GG+ Sbjct: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 259 bits (663), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 141/282 (50%), Positives = 181/282 (64%), Gaps = 12/282 (4%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGN-MLCEEVLS 59 MLSRLE GGKIII MTRW S+DLAGRAL + G +V+HIN KA E N MLC++VL+ Sbjct: 191 MLSRLESGGKIIINMTRWHSEDLAGRALRELPKNGYRVKHINFKAFNEQTNEMLCDDVLT 250 Query: 60 LNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKGNLLFTSIKAYVDT 119 L YK KV+ MG DIASANYQQEPID+KG LY+ F+TY+ + I Y DT Sbjct: 251 LEDYKRKVKTMGADIASANYQQEPIDVKGRLYSEFQTYN-------ARSEYKKIWNYCDT 303 Query: 120 ADEGADYLCSIVYG-VYNKEVYVLDVLYTKESMETTEYKTAKMFYENEVNKADIESNSGG 178 AD G DYLCSIV+G + VLD++YT++ ME TE A N VN + IE N+GG Sbjct: 304 ADTGKDYLCSIVWGETSDGFADVLDIIYTQKPMEYTENAVANQLINNRVNASRIERNNGG 363 Query: 179 RAFARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSNSSWVMEHIYFPVNWRDRWQDYY 238 R+FAR+V+ ++ K ++ F Q NK ARI SNS W+ +H+ P +WR R+ +YY Sbjct: 364 RSFARSVRDKIQGKVAC---AVEDFFQGNNKEARIYSNSYWIEQHVRLPNDWRTRFPEYY 420 Query: 239 KAMVSYQREGKNKHDDACFEEGTQISTLFGNKSIEKIKEGGY 280 +AM +YQREGKNKHDDA T+ K+ K +GG+ Sbjct: 421 QAMTTYQREGKNKHDDAPDATTGIAETMTTRKAKLKSFKGGF 462 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 118/293 (40%), Gaps = 44/293 (15%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQE-------DGNML 53 + +RL +++ MTRW DLAGR ++ + G + R + A+ E +G L Sbjct: 206 LYTRLSPKSGVLLGMTRWHEDDLAGRLIKEAENGGDQWRIVKFPAIAEEDEEFRKEGEPL 265 Query: 54 CEEVLSLNSYKSKVRAMGEDIASANYQQEPID-----LKGCLYTRFKTYDKLPVDEKGNL 108 E L +A+G +A YQQ P + +KG + R+K P+ Sbjct: 266 HPERFDLERLNKIRQAVGSQAWNALYQQRPSNKGGGIIKGSWFGRYKVP---PI------ 316 Query: 109 LFTSIKA-YVDTAD---EGADYLCSIVYGV-YNKEVYVLDVLYTKESMETTEYKTAKMFY 163 +KA Y DTA + DY IV G + + Y+LD++ K E ++ Sbjct: 317 --IKVKAIYADTAQKTKQHNDYSVFIVAGKGADGKAYILDLIRGKWEAPELEQTLKDVWA 374 Query: 164 ENEVNK-------ADIESNSGGRAFARNVQRILKEKFKSNKTTIKWFHQSKNKNARILSN 216 +++ K A++E + G + + ++R +N+ I +K R+L Sbjct: 375 KHKAKKETGILTRANVEDKASGTSLIQTIRR-------NNQIPITPIQVDADKYTRVLGV 427 Query: 217 SSWVMEHIYFPVNWRDRW-QDYYKAMVSYQREGKNKHDDACFEEGTQISTLFG 268 ++ E Y + W D+ ++ + HDD IS + G Sbjct: 428 QGYI-ESGYVMLPESAPWIADFINECEAFTATDSHAHDDQVDALVMAISDILG 479 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 24/154 (15%) Query: 3 SRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKV---RHINMKALQEDG--------- 50 +RL G I+I TRW +DLAG+ L E K RHIN+ A+ E+G Sbjct: 235 TRLAPGAPTILIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAP 294 Query: 51 --NMLCEEVLSLNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDK----LPVDE 104 M+ + +++ R +G+ + A YQ P + G L+ R D+ P+ Sbjct: 295 GEAMVSARGRTKEQFEATKRKVGDRVWYAMYQGSPTNPAGGLFQRSWFEDRRLTGTPI-- 352 Query: 105 KGNLLFTSIKAYVDTADEGADYLCSIVYGVYNKE 138 L SI +D AD G I+ G + Sbjct: 353 ---LPVASIVG-IDPADSGEGDETGIIAGTLTGD 382 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 24/154 (15%) Query: 3 SRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKV---RHINMKALQEDG--------- 50 +RL G I+I TRW +DLAG+ L E K RHIN+ A+ E+G Sbjct: 237 TRLAPGAPTILIQTRWHPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAP 296 Query: 51 --NMLCEEVLSLNSYKSKVRAMGEDIASANYQQEPIDLKGCLYTRFKTYDK----LPVDE 104 M+ + +++ R +G+ + A YQ P + G L+ R D+ P+ Sbjct: 297 GEAMVSARGRTKEQFEATKRKVGDRVWYAMYQGSPTNPAGGLFQRSWFEDRRLTGTPI-- 354 Query: 105 KGNLLFTSIKAYVDTADEGADYLCSIVYGVYNKE 138 L SI +D AD G I+ G + Sbjct: 355 ---LPVASIVG-IDPADSGEGDETGIIAGTLTGD 384 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 26/174 (14%) Query: 2 LSRLEEGGKIIIIMTRWSSKDLAGRALEHYK---EEGKKVRHINMKALQEDGNMLCEEVL 58 L+RL II+I TRW +DLAG+ L K + + RH+N+ A+ E+G + L Sbjct: 249 LTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEG---IPDAL 305 Query: 59 SLNSYKSKVRAMGEDIASAN----------------YQQEPIDLKGCLYTRFKTYDKLPV 102 V A D A N YQ P + G ++ R +LP Sbjct: 306 KRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLP- 364 Query: 103 DEKGNLLFTSIKAYVDTADEGADYLCSIVYG-VYNKEVYVLDVLYTKESMETTE 155 + S+ +D AD G IV G +Y+ + + + + + M T++ Sbjct: 365 -QPPTYPAASVVG-IDPADSGEGDETGIVCGALYHDGMAKVALTHDRSGMFTSD 416 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 44.7 bits (104), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 12/100 (12%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRHINMKALQEDGNMLCEEV--- 57 +RL +G +I+IMTRW DL GR L+ +++R + A+ E+ ++L E+ Sbjct: 193 FFTRLHKGHSVIVIMTRWHEDDLIGRLLKANTLPWERIR---LPAIAEENDLLGREIGQA 249 Query: 58 ----LSLNSYKSKV--RAMGEDIASANYQQEPIDLKGCLY 91 L N +++ + +G ++ YQQ P +G ++ Sbjct: 250 LCPELGYNEEWAEITKKTVGSRTWASLYQQRPRPAEGAIF 289 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 42.4 bits (98), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 22/144 (15%) Query: 16 TRWSSKDLAGRALEHYK---EEGKKVRHINMKALQEDG------------NMLCEEVLSL 60 TRW +DL+G + K E + RHIN+ A+ E+G M+ +L Sbjct: 490 TRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEEGIPDALGRPEPGIPMISARGRTL 549 Query: 61 NSYKSKVRAMGEDIASANYQQEPIDLKGCLYTR--FKTYDKLPVDEKGNLLFTSIKAYVD 118 + +++GE + A YQ P + G L+ R F+ P+ E+ + +D Sbjct: 550 REFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFE-----PMAERSPERPLATIVAID 604 Query: 119 TADEGADYLCSIVYGVYNKEVYVL 142 AD G I+ G+ +++ ++ Sbjct: 605 PADSGEGDETGIIGGMLDRDGTIV 628 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 39.3 bits (90), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Query: 3 SRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRH---INMKALQEDG--NMLCEE- 56 +RL II+I TRW +DLAG+ + + + R IN+ A+ E G + L E Sbjct: 253 TRLAPDASIIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREP 312 Query: 57 ----VLSLNSYKSK------VRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKG 106 V + ++ ++K R +GE A YQ P + +G ++ + K +D + E Sbjct: 313 GTPMVSARDTPEAKRNFPKIRREVGERTWYALYQGSPRNPEGGIFQQ-KWFDATRLPEAP 371 Query: 107 NLLFTSIKAYVDTADEGADYLCSIVYGV 134 +T++ +D AD G I+ G+ Sbjct: 372 LNPYTAVVG-IDPADSGEGDEAGIIGGM 398 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 39.3 bits (90), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 18/148 (12%) Query: 3 SRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKKVRH---INMKALQEDG--NMLCEE- 56 +RL II+I TRW +DLAG+ + + + R IN+ A+ E G + L E Sbjct: 253 TRLAPDASIIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDALKREP 312 Query: 57 ----VLSLNSYKSK------VRAMGEDIASANYQQEPIDLKGCLYTRFKTYDKLPVDEKG 106 V + ++ ++K R +GE A YQ P + +G ++ + K +D + E Sbjct: 313 GTPMVSARDTPEAKRNFPKIRREVGERTWYALYQGSPRNPEGGIFQQ-KWFDATRLPEAP 371 Query: 107 NLLFTSIKAYVDTADEGADYLCSIVYGV 134 +T++ +D AD G I+ G+ Sbjct: 372 LNPYTAVVG-IDPADSGEGDEAGIIGGM 398 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 38.5 bits (88), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 13/104 (12%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKK-VRHINMKALQEDGNMLCEEVLS 59 +L+RL++ +I+I T WS+ DL R K EG+ ++ AL + + L Sbjct: 219 LLTRLQQLSGVILIGTPWSANDLLARV--RRKMEGQPNFTLLSFPALNDPDQIGYNPDLP 276 Query: 60 LNSY------KSKVRAMGEDIA----SANYQQEPIDLKGCLYTR 93 L + K+R M +I+ SA YQQ P+ G +++R Sbjct: 277 LGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFSR 320 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKK-VRHINMKALQEDGNMLCEEVLS 59 +L+RL++ +I+I T WS+ DL R K EG+ ++ AL + + L Sbjct: 219 LLTRLQQLSGVILIGTPWSANDLLARV--RRKMEGQPNFTLLSFPALNDPDQIGYNPDLP 276 Query: 60 LNSY------KSKVRAMGEDIA----SANYQQEPIDLKGCLYTR 93 L + K+R M +I+ SA YQQ P+ G ++ R Sbjct: 277 LGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFPR 320 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKK-VRHINMKALQEDGNMLCEEVLS 59 +L+RL++ +I+I T WS+ DL R K EG+ ++ AL + + L Sbjct: 219 LLTRLQQLSGVILIGTPWSANDLLARV--RRKMEGQPNFTLLSFPALNDPDQIGYNPDLP 276 Query: 60 LNSY------KSKVRAMGEDIA----SANYQQEPIDLKGCLYTR 93 L + K+R M +I+ SA YQQ P+ G ++ R Sbjct: 277 LGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFPR 320 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 13/104 (12%) Query: 1 MLSRLEEGGKIIIIMTRWSSKDLAGRALEHYKEEGKK-VRHINMKALQEDGNMLCEEVLS 59 +L+RL++ +I+I T WS+ DL R K EG+ ++ AL + + L Sbjct: 219 LLTRLQQLSGVILIGTPWSANDLLARV--RRKMEGQPNFTLLSFPALNDPDQIGYNPDLP 276 Query: 60 LNSY------KSKVRAMGEDIA----SANYQQEPIDLKGCLYTR 93 L + K+R M +I+ SA YQQ P+ G ++ R Sbjct: 277 LGALVPHLHSADKLREMRRNISEFWWSAMYQQVPLSEFGAIFPR 320 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 25.8 bits (55), Expect = 0.81, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 79 YQQEPIDLKGCLYTR--FKTYDKLPVDEKGNLLFTSI 113 Y EP+ L +Y FK D+LP D++ LF S+ Sbjct: 236 YLGEPVGLGTNVYNMNLFKPLDQLPSDDRVIALFYSV 272 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 18 WSSKDLAGRALEHYKEE 34 WSSK +AG AL+ +++E Sbjct: 340 WSSKTIAGSALDAFQQE 356 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 18 WSSKDLAGRALEHYKEE 34 WSSK +AG AL+ +++E Sbjct: 340 WSSKTIAGSALDAFQQE 356 >gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: ORF010 # Family: family:all:1430 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240892;genbank:gi:66394959;genbank:GeneID :5132488 Length = 605 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 17/58 (29%) Query: 14 IMTRWSSKDLAGRALEHYKEE------GKKVRHI-----------NMKALQEDGNMLC 54 I+ RWS+ + G + ++ G + +H N L+E GNMLC Sbjct: 204 IVRRWSTPSVPGMGIHKLYQQSDQWYYGHRCQHCDYLNEMSYNDYNPDNLEESGNMLC 261 >gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024465;genbank:gi:48696425;genbank:GeneID :2948061 Length = 605 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 17/58 (29%) Query: 14 IMTRWSSKDLAGRALEHYKEE------GKKVRHI-----------NMKALQEDGNMLC 54 I+ RWS+ + G + ++ G + +H N L+E GNMLC Sbjct: 204 IVRRWSTPSVPGMGIHKLYQQSDQWYYGHRCQHCDYLNEMSYNDYNPDNLEESGNMLC 261 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 168 NKADIESNSGGRAFARNVQRILKE-KFKSNKTTIKWFHQSKNKNARI 213 ++AD GG AR VQ ILK+ K + I H+ + ARI Sbjct: 57 DRADSVERIGGALEARLVQLILKDGKTGGDYKEIDLLHRQLERQARI 103 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 13/17 (76%) Query: 18 WSSKDLAGRALEHYKEE 34 WSS+ +AG +LE + +E Sbjct: 333 WSSQAIAGSSLEQFLQE 349 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 13/17 (76%) Query: 18 WSSKDLAGRALEHYKEE 34 WSS+ +AG +LE + +E Sbjct: 333 WSSQAIAGSSLEQFLQE 349 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.316 0.133 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,484 Number of Sequences: 514 Number of extensions: 7255 Number of successful extensions: 59 Number of sequences better than 100.0: 26 Number of HSP's better than 100.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 27 length of query: 322 length of database: 206,069 effective HSP length: 72 effective length of query: 250 effective length of database: 169,061 effective search space: 42265250 effective search space used: 42265250 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 37 (18.9 bits)