Query lcl|Aclame:protein:vir:100882|NCBI_annot:putative portal protein|genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Match_columns 383 No_of_seqs 128 out of 1083 Neff 10.0 Searched_HMMs 1612 Date Sun Dec 1 14:33:35 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_28 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_28_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:100882 Length: 383 100.0 8.1E-97 5E-100 547.4 42.3 383 1-383 1-383 (383) 2 protein:vir:100187 Length: 385 100.0 5.2E-96 3.2E-99 543.0 42.3 383 1-383 1-383 (385) 3 protein:vir:100249 Length: 431 100.0 6.1E-85 3.8E-88 482.3 41.8 376 1-383 1-425 (431) 4 protein:vir:4454 Length: 414 # 100.0 1.4E-84 8.4E-88 480.4 41.8 376 1-383 1-407 (414) 5 protein:vir:98396 Length: 441 100.0 2.1E-84 1.3E-87 479.4 41.9 375 1-383 1-440 (441) 6 protein:vir:79984 Length: 441 100.0 3.4E-84 2.1E-87 478.2 41.6 375 1-383 1-440 (441) 7 protein:vir:9408 Length: 441 # 100.0 3.4E-84 2.1E-87 478.2 41.6 375 1-383 1-440 (441) 8 protein:vir:81152 Length: 411 100.0 8.9E-84 5.5E-87 475.9 41.6 372 1-382 1-411 (411) 9 protein:vir:4598 Length: 416 # 100.0 1E-83 6.3E-87 475.6 41.4 370 1-383 1-415 (416) 10 protein:vir:81095 Length: 416 100.0 1E-83 6.3E-87 475.6 41.4 370 1-383 1-415 (416) 11 protein:vir:102080 Length: 429 100.0 3.2E-83 2E-86 472.9 42.5 377 1-383 1-418 (429) 12 protein:vir:1884 Length: 424 # 100.0 1.5E-83 9.3E-87 474.7 40.6 376 1-383 14-417 (424) 13 protein:vir:189 Length: 424 # 100.0 2.3E-83 1.4E-86 473.6 40.6 376 1-383 14-417 (424) 14 protein:vir:1380 Length: 422 # 100.0 3.2E-83 2E-86 472.8 41.1 376 1-383 1-420 (422) 15 protein:vir:6240 Length: 457 # 100.0 2.5E-83 1.6E-86 473.4 40.5 379 1-383 1-438 (457) 16 protein:vir:4337 Length: 434 # 100.0 3.1E-83 1.9E-86 473.0 40.9 378 1-383 1-413 (434) 17 protein:vir:4509 Length: 424 # 100.0 5.7E-83 3.5E-86 471.5 41.2 373 1-383 16-424 (424) 18 protein:vir:100150 Length: 437 100.0 6.4E-83 4E-86 471.2 41.3 378 1-383 1-430 (437) 19 protein:vir:102855 Length: 432 100.0 1.2E-82 7.7E-86 469.6 41.9 377 1-383 1-421 (432) 20 protein:vir:105002 Length: 432 100.0 1.2E-82 7.7E-86 469.6 41.9 377 1-383 1-421 (432) 21 protein:vir:107605 Length: 432 100.0 1.2E-82 7.7E-86 469.6 41.9 377 1-383 1-421 (432) 22 protein:vir:93610 Length: 454 100.0 3E-82 1.9E-85 467.5 41.0 375 3-383 1-419 (454) 23 protein:vir:1326 Length: 457 # 100.0 7.4E-82 4.6E-85 465.4 41.1 379 1-383 1-446 (457) 24 protein:vir:483 Length: 413 # 100.0 1.8E-81 1.1E-84 463.2 41.3 375 2-383 1-409 (413) 25 protein:vir:8418 Length: 409 # 100.0 2.1E-81 1.3E-84 462.9 40.5 374 1-383 1-400 (409) 26 protein:vir:105064 Length: 421 100.0 3.1E-81 1.9E-84 461.9 41.3 368 1-383 1-406 (421) 27 protein:vir:81072 Length: 432 100.0 2.6E-81 1.6E-84 462.3 40.7 375 1-383 7-426 (432) 28 protein:vir:10362 Length: 432 100.0 2.5E-81 1.6E-84 462.5 40.3 375 1-383 7-426 (432) 29 protein:vir:102118 Length: 409 100.0 6.5E-81 4E-84 460.2 42.0 370 1-382 1-409 (409) 30 protein:vir:1266 Length: 416 # 100.0 6.5E-81 4.1E-84 460.2 41.8 371 2-383 1-413 (416) 31 protein:vir:81218 Length: 423 100.0 4E-81 2.5E-84 461.4 40.3 378 1-383 1-421 (423) 32 protein:vir:5737 Length: 419 # 100.0 5.9E-81 3.7E-84 460.4 41.1 372 1-383 1-403 (419) 33 protein:vir:97060 Length: 432 100.0 5.6E-81 3.5E-84 460.5 40.9 374 1-383 7-426 (432) 34 protein:vir:1431 Length: 419 # 100.0 1.3E-80 8.1E-84 458.5 41.1 369 2-383 1-405 (419) 35 protein:vir:3843 Length: 397 # 100.0 6E-80 3.7E-83 454.9 40.0 371 1-383 1-385 (397) 36 protein:vir:80333 Length: 419 100.0 4.6E-79 2.8E-82 450.1 40.7 369 1-383 1-405 (419) 37 protein:vir:9702 Length: 406 # 100.0 2.7E-78 1.7E-81 445.8 40.7 363 1-383 1-400 (406) 38 protein:vir:3868 Length: 417 # 100.0 2.1E-78 1.3E-81 446.5 39.6 364 1-383 1-403 (417) 39 protein:vir:7853 Length: 518 # 100.0 5.8E-78 3.6E-81 444.0 40.7 375 1-383 1-416 (518) 40 protein:vir:101648 Length: 518 100.0 1.4E-77 8.7E-81 441.9 40.4 372 1-383 1-416 (518) 41 protein:vir:8317 Length: 409 # 100.0 7.4E-78 4.6E-81 443.4 37.4 360 1-382 1-409 (409) 42 protein:vir:96980 Length: 409 100.0 3E-77 1.8E-80 440.1 40.6 369 1-383 4-405 (409) 43 protein:vir:2683 Length: 412 # 100.0 6.9E-77 4.3E-80 438.1 40.7 372 1-383 1-408 (412) 44 protein:vir:7407 Length: 392 # 100.0 1.5E-76 9.1E-80 436.3 40.1 372 1-383 3-388 (392) 45 protein:vir:8100 Length: 466 # 100.0 3.2E-76 2E-79 434.4 40.0 379 1-383 1-464 (466) 46 protein:vir:1082 Length: 359 # 100.0 2.1E-76 1.3E-79 435.4 38.5 350 1-363 1-359 (359) 47 protein:vir:94666 Length: 723 100.0 5.5E-76 3.4E-79 433.2 40.3 358 16-383 1-406 (723) 48 protein:vir:94426 Length: 409 100.0 6.8E-76 4.2E-79 432.7 40.6 369 1-383 1-405 (409) 49 protein:vir:101647 Length: 460 100.0 3.3E-76 2E-79 434.4 38.2 374 1-383 2-458 (460) 50 protein:vir:4854 Length: 386 # 100.0 5.3E-76 3.3E-79 433.3 39.3 370 1-383 1-383 (386) 51 protein:vir:93943 Length: 409 100.0 1.2E-75 7.3E-79 431.4 40.4 369 1-383 1-405 (409) 52 protein:vir:3989 Length: 392 # 100.0 1.9E-75 1.2E-78 430.2 39.9 372 1-383 3-388 (392) 53 protein:vir:1023 Length: 392 # 100.0 1.9E-75 1.2E-78 430.2 39.9 372 1-383 3-388 (392) 54 protein:vir:4952 Length: 386 # 100.0 2.1E-75 1.3E-78 430.0 38.5 373 1-383 1-383 (386) 55 protein:vir:95378 Length: 406 100.0 1.4E-74 8.7E-78 425.5 40.4 365 1-383 1-399 (406) 56 protein:vir:4828 Length: 382 # 100.0 1.7E-74 1.1E-77 425.0 39.2 370 1-383 1-379 (382) 57 protein:vir:6210 Length: 394 # 100.0 1.5E-74 9.3E-78 425.3 38.8 361 1-383 1-392 (394) 58 protein:vir:104259 Length: 403 100.0 2.6E-74 1.6E-77 424.0 39.2 366 1-383 1-397 (403) 59 protein:vir:960 Length: 413 # 100.0 2.9E-73 1.8E-76 418.2 38.6 368 1-383 13-406 (413) 60 protein:vir:80134 Length: 403 100.0 3.4E-73 2.1E-76 417.9 38.0 363 1-383 1-396 (403) 61 protein:vir:9507 Length: 395 # 100.0 2.7E-73 1.7E-76 418.4 37.1 354 1-383 1-391 (395) 62 protein:vir:100650 Length: 395 100.0 2.7E-73 1.7E-76 418.4 37.1 354 1-383 1-391 (395) 63 protein:vir:101289 Length: 395 100.0 2.7E-73 1.7E-76 418.4 37.1 354 1-383 1-391 (395) 64 protein:vir:102727 Length: 945 100.0 1.8E-72 1.1E-75 413.8 40.8 380 1-383 62-528 (945) 65 protein:vir:4995 Length: 384 # 100.0 3.8E-73 2.4E-76 417.6 35.8 361 1-371 1-384 (384) 66 protein:vir:95965 Length: 385 100.0 1.1E-72 6.7E-76 415.1 36.8 355 1-383 1-383 (385) 67 protein:vir:4089 Length: 395 # 100.0 1E-69 6.5E-73 398.8 36.4 359 1-383 1-389 (395) 68 protein:vir:9641 Length: 395 # 100.0 1.4E-69 9E-73 398.0 35.2 357 1-383 1-390 (395) 69 protein:vir:98643 Length: 395 100.0 2.3E-69 1.4E-72 396.9 35.9 361 1-383 1-390 (395) 70 protein:vir:78310 Length: 376 100.0 2E-68 1.2E-71 391.8 35.7 350 1-383 1-375 (376) 71 protein:vir:80644 Length: 551 100.0 9.7E-68 6E-71 388.0 39.0 379 1-383 5-488 (551) 72 protein:vir:9359 Length: 348 # 100.0 1.1E-67 7E-71 387.6 37.8 314 60-383 1-344 (348) 73 protein:vir:100691 Length: 535 100.0 3.8E-66 2.3E-69 379.3 40.6 378 1-383 34-513 (535) 74 protein:vir:4194 Length: 540 # 100.0 8.9E-67 5.5E-70 382.7 36.8 374 1-383 6-427 (540) 75 protein:vir:63755 Length: 547 100.0 3E-66 1.9E-69 379.8 39.0 380 1-383 1-502 (547) 76 protein:vir:80796 Length: 574 100.0 4.5E-66 2.8E-69 378.8 39.0 379 1-383 27-509 (574) 77 protein:vir:96579 Length: 576 100.0 1.5E-65 9.3E-69 376.0 38.0 379 1-383 32-493 (576) 78 protein:vir:94002 Length: 378 100.0 2.4E-66 1.5E-69 380.3 33.4 329 1-383 1-378 (378) 79 protein:vir:4156 Length: 542 # 100.0 3.8E-65 2.4E-68 373.8 38.9 372 3-383 1-429 (542) 80 protein:vir:1661 Length: 378 # 100.0 6.2E-66 3.9E-69 378.1 33.7 329 1-383 1-375 (378) 81 protein:vir:99312 Length: 563 100.0 5E-65 3.1E-68 373.1 37.5 377 1-383 43-494 (563) 82 protein:vir:95599 Length: 563 100.0 5E-65 3.1E-68 373.1 37.5 377 1-383 43-494 (563) 83 protein:vir:3153 Length: 467 # 100.0 5.6E-65 3.5E-68 372.8 36.9 340 40-383 1-441 (467) 84 protein:vir:93867 Length: 378 100.0 1.4E-65 8.9E-69 376.1 33.2 329 1-383 1-378 (378) 85 protein:vir:94869 Length: 378 100.0 7.3E-65 4.6E-68 372.2 33.5 329 1-383 1-378 (378) 86 protein:vir:858 Length: 378 # 100.0 3.8E-64 2.4E-67 368.2 33.2 328 1-383 1-378 (378) 87 protein:vir:79772 Length: 648 100.0 2E-60 1.2E-63 347.9 37.5 377 1-383 8-492 (648) 88 protein:vir:99452 Length: 651 100.0 1.4E-59 8.5E-63 343.3 36.3 374 1-383 1-524 (651) 89 protein:vir:79150 Length: 368 100.0 1.4E-51 8.7E-55 299.4 29.9 335 1-346 1-368 (368) 90 protein:vir:78641 Length: 278 100.0 7E-51 4.3E-54 295.6 31.7 258 60-327 1-278 (278) 91 protein:vir:100328 Length: 346 100.0 3.2E-51 2E-54 297.4 29.4 321 1-332 1-346 (346) 92 protein:vir:103971 Length: 376 100.0 1.1E-49 6.9E-53 289.0 32.0 313 1-334 26-376 (376) 93 protein:vir:79207 Length: 351 100.0 2.4E-49 1.5E-52 287.1 31.6 310 4-334 1-351 (351) 94 protein:vir:98567 Length: 340 100.0 3.4E-49 2.1E-52 286.3 30.0 319 1-331 1-340 (340) 95 protein:vir:78191 Length: 351 100.0 9.5E-49 5.9E-52 283.9 31.5 310 4-334 1-351 (351) 96 protein:vir:6058 Length: 344 # 100.0 2.8E-48 1.7E-51 281.3 30.3 319 4-332 1-344 (344) 97 protein:vir:267 Length: 348 # 100.0 8E-48 5E-51 278.8 31.5 308 1-335 1-348 (348) 98 protein:vir:2013 Length: 344 # 100.0 8.6E-48 5.3E-51 278.6 30.3 319 1-332 1-344 (344) 99 protein:vir:5691 Length: 344 # 100.0 1.1E-47 6.9E-51 278.0 30.1 319 4-332 1-344 (344) 100 protein:vir:3780 Length: 345 # 100.0 4.9E-47 3.1E-50 274.5 29.8 321 1-329 1-345 (345) 101 protein:vir:78749 Length: 337 100.0 4.7E-47 2.9E-50 274.6 29.6 306 1-328 1-337 (337) 102 protein:vir:1150 Length: 350 # 100.0 8.3E-47 5.2E-50 273.2 30.5 317 1-327 1-350 (350) 103 protein:vir:3743 Length: 345 # 100.0 3.4E-47 2.1E-50 275.4 27.4 309 1-329 1-345 (345) 104 protein:vir:4698 Length: 251 # 100.0 1.3E-45 8.4E-49 266.6 25.3 232 1-241 1-251 (251) 105 protein:vir:98853 Length: 219 100.0 2.4E-41 1.5E-44 243.3 22.9 206 123-331 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.9 1.9E-25 1.2E-28 156.1 28.4 372 1-383 1-437 (437) 107 protein:vir:79647 Length: 435 99.9 3.2E-22 2E-25 138.4 26.6 372 1-383 1-435 (435) 108 protein:vir:107742 Length: 537 99.8 3.9E-21 2.4E-24 132.5 27.3 370 1-383 55-509 (537) 109 protein:vir:99563 Length: 862 99.8 5.1E-20 3.1E-23 126.4 26.9 367 1-383 66-549 (862) 110 protein:vir:94049 Length: 532 99.8 4.9E-20 3E-23 126.5 25.1 374 1-383 33-511 (532) 111 protein:vir:104338 Length: 422 99.8 2.4E-19 1.5E-22 122.7 27.9 364 1-381 1-422 (422) 112 protein:vir:80040 Length: 461 99.8 8.5E-20 5.3E-23 125.1 25.4 367 1-383 1-457 (461) 113 protein:vir:96068 Length: 765 99.8 3E-19 1.9E-22 122.1 25.9 376 1-383 44-513 (765) 114 protein:vir:107662 Length: 427 99.7 1.3E-18 7.9E-22 118.7 23.6 368 1-383 1-426 (427) 115 protein:vir:99853 Length: 488 99.7 1.7E-16 1.1E-19 107.0 30.4 362 8-383 1-405 (488) 116 protein:vir:103860 Length: 528 99.6 1.3E-14 7.8E-18 96.8 34.1 364 1-383 1-448 (528) 117 protein:vir:108215 Length: 469 99.6 1.6E-14 1E-17 96.2 33.4 368 4-383 1-446 (469) 118 protein:vir:99232 Length: 526 99.6 4.7E-14 2.9E-17 93.7 34.0 362 1-383 1-447 (526) 119 protein:vir:79233 Length: 526 99.6 1.1E-13 6.9E-17 91.6 35.2 363 1-383 1-446 (526) 120 protein:vir:98816 Length: 446 99.6 2.9E-15 1.8E-18 100.3 25.4 355 1-366 1-446 (446) 121 protein:vir:79063 Length: 491 99.6 2.1E-13 1.3E-16 90.0 32.6 361 1-383 3-417 (491) 122 protein:vir:79538 Length: 502 99.5 3.4E-14 2.1E-17 94.4 27.2 374 1-383 1-500 (502) 123 protein:vir:1986 Length: 512 # 99.5 5.7E-13 3.6E-16 87.7 33.7 365 1-383 1-434 (512) 124 protein:vir:107880 Length: 491 99.5 4.8E-13 3E-16 88.1 32.9 362 1-383 3-417 (491) 125 protein:vir:79511 Length: 448 99.5 5.8E-13 3.6E-16 87.7 29.9 371 1-383 1-440 (448) 126 protein:vir:77981 Length: 448 99.5 1.1E-12 6.9E-16 86.1 30.9 361 1-383 1-428 (448) 127 protein:vir:96738 Length: 505 99.4 1.5E-12 9.3E-16 85.4 25.7 374 1-382 8-505 (505) 128 protein:vir:95542 Length: 548 99.4 5.9E-13 3.7E-16 87.6 23.5 373 1-383 1-512 (548) 129 protein:vir:3420 Length: 533 # 99.3 1.4E-11 8.7E-15 80.1 27.9 379 1-383 3-526 (533) 130 protein:vir:389 Length: 530 # 99.3 1.9E-11 1.2E-14 79.4 27.4 379 1-383 1-524 (530) 131 protein:vir:105782 Length: 449 99.3 3.2E-12 2E-15 83.6 22.9 354 1-383 23-448 (449) 132 protein:vir:95254 Length: 488 99.3 1.7E-10 1.1E-13 74.1 31.0 367 1-383 1-464 (488) 133 protein:vir:78589 Length: 695 99.3 1E-11 6.2E-15 80.9 23.8 367 1-383 67-540 (695) 134 protein:vir:101541 Length: 694 99.3 1.1E-11 6.9E-15 80.6 23.8 368 1-383 65-539 (694) 135 protein:vir:3648 Length: 695 # 99.3 1E-11 6.4E-15 80.8 23.4 367 1-383 67-540 (695) 136 protein:vir:106716 Length: 698 99.3 1.2E-11 7.3E-15 80.5 23.1 368 1-383 67-541 (698) 137 protein:vir:6382 Length: 553 # 99.2 9.8E-11 6.1E-14 75.5 27.2 377 1-383 2-552 (553) 138 protein:vir:10321 Length: 495 99.2 6.6E-11 4.1E-14 76.4 25.9 375 1-383 1-495 (495) 139 protein:vir:78161 Length: 355 99.2 1.3E-10 7.9E-14 74.8 26.6 271 103-383 1-317 (355) 140 protein:vir:106491 Length: 646 98.9 9.2E-10 5.7E-13 70.1 19.0 371 1-383 1-458 (646) 141 protein:vir:8654 Length: 629 # 98.8 1.7E-09 1.1E-12 68.6 18.5 374 1-383 1-504 (629) 142 protein:vir:98444 Length: 434 98.8 2.8E-08 1.8E-11 62.0 24.8 344 28-383 1-429 (434) 143 protein:vir:99088 Length: 629 98.8 2E-09 1.3E-12 68.2 18.2 374 1-383 1-504 (629) 144 protein:vir:102426 Length: 631 98.6 3.1E-08 1.9E-11 61.7 19.0 373 1-383 1-494 (631) 145 protein:vir:103219 Length: 201 98.6 2.5E-09 1.5E-12 67.8 12.9 176 200-383 1-201 (201) 146 protein:vir:106027 Length: 629 98.4 4.4E-07 2.8E-10 55.4 20.1 376 1-383 1-497 (629) 147 protein:vir:7768 Length: 484 # 98.4 8.9E-07 5.5E-10 53.8 21.1 362 1-383 1-471 (484) 148 protein:vir:94742 Length: 409 98.2 2.2E-06 1.4E-09 51.6 25.5 337 1-363 3-409 (409) 149 protein:vir:1587 Length: 508 # 98.2 2.3E-06 1.4E-09 51.5 25.2 373 1-383 1-508 (508) 150 protein:vir:102602 Length: 456 98.2 2E-06 1.2E-09 51.8 19.3 365 1-383 7-453 (456) 151 protein:vir:105819 Length: 456 98.2 2E-06 1.2E-09 51.8 19.3 365 1-383 7-453 (456) 152 protein:vir:9751 Length: 422 # 98.1 3.9E-06 2.4E-09 50.2 21.0 350 1-379 1-422 (422) 153 protein:vir:104082 Length: 485 98.1 4.1E-06 2.6E-09 50.1 22.8 367 1-383 8-466 (485) 154 protein:vir:2341 Length: 488 # 98.0 6.1E-06 3.8E-09 49.2 23.0 368 1-383 10-484 (488) 155 protein:vir:7987 Length: 456 # 98.0 1.3E-06 7.9E-10 52.9 15.5 373 1-383 7-453 (456) 156 protein:vir:4782 Length: 522 # 97.9 1.1E-05 6.6E-09 47.8 25.3 374 1-383 1-521 (522) 157 protein:vir:8184 Length: 474 # 97.9 1.2E-05 7.6E-09 47.5 21.6 373 1-383 17-474 (474) 158 protein:vir:38 Length: 496 # N 97.8 1.9E-05 1.2E-08 46.4 24.1 372 1-383 16-496 (496) 159 protein:vir:80959 Length: 499 97.8 2.2E-05 1.4E-08 46.1 24.9 373 1-383 16-499 (499) 160 protein:vir:4073 Length: 279 # 97.8 1.3E-07 8.3E-11 58.3 6.0 264 48-365 1-279 (279) 161 protein:vir:99916 Length: 504 97.7 2.6E-05 1.6E-08 45.7 25.4 373 1-383 23-481 (504) 162 protein:vir:99072 Length: 479 97.7 3.1E-05 1.9E-08 45.3 26.4 361 1-383 15-461 (479) 163 protein:vir:107517 Length: 639 97.6 4.4E-06 2.7E-09 49.9 12.8 363 1-383 35-510 (639) 164 protein:vir:97900 Length: 639 97.6 4.4E-06 2.7E-09 49.9 12.8 363 1-383 35-510 (639) 165 protein:vir:79703 Length: 505 97.6 4E-05 2.5E-08 44.7 26.9 369 1-381 1-505 (505) 166 protein:vir:4223 Length: 486 # 97.5 5.1E-05 3.1E-08 44.1 27.0 361 1-382 6-486 (486) 167 protein:vir:1634 Length: 409 # 97.5 5.2E-05 3.2E-08 44.1 24.6 335 1-363 3-409 (409) 168 protein:vir:5961 Length: 503 # 97.5 5.7E-05 3.5E-08 43.8 28.8 365 1-383 13-484 (503) 169 protein:vir:97376 Length: 320 97.4 2.1E-05 1.3E-08 46.2 14.0 304 1-383 1-318 (320) 170 protein:vir:2427 Length: 485 # 97.4 7.1E-05 4.4E-08 43.3 27.6 368 1-383 6-485 (485) 171 protein:vir:95113 Length: 474 97.4 7.2E-05 4.5E-08 43.3 29.5 365 1-383 33-472 (474) 172 protein:vir:78907 Length: 518 97.4 7.5E-05 4.6E-08 43.2 26.3 370 1-380 1-518 (518) 173 protein:vir:78227 Length: 480 97.3 0.00011 7.1E-08 42.2 27.4 364 1-383 1-476 (480) 174 protein:vir:9568 Length: 410 # 97.2 0.00014 8.8E-08 41.7 25.3 340 1-381 1-410 (410) 175 protein:vir:93747 Length: 472 97.1 0.00016 1E-07 41.3 29.5 358 1-383 22-470 (472) 176 protein:vir:4995 Length: 384 # 97.1 0.00012 7.6E-08 42.0 14.8 325 4-383 1-381 (384) 177 protein:vir:5839 Length: 533 # 97.1 0.00019 1.2E-07 41.0 22.5 378 1-383 4-526 (533) 178 protein:vir:1236 Length: 483 # 97.1 0.00019 1.2E-07 41.0 29.5 366 1-383 41-481 (483) 179 protein:vir:3028 Length: 500 # 97.0 0.0002 1.2E-07 40.9 22.2 369 1-381 1-500 (500) 180 protein:vir:9815 Length: 500 # 97.0 0.0002 1.2E-07 40.9 22.2 369 1-381 1-500 (500) 181 protein:vir:95806 Length: 440 97.0 0.00022 1.4E-07 40.6 24.9 364 3-383 1-440 (440) 182 protein:vir:79043 Length: 479 96.9 0.00025 1.5E-07 40.4 28.4 359 1-383 25-478 (479) 183 protein:vir:94805 Length: 492 96.9 0.00029 1.8E-07 40.0 28.7 362 1-383 50-485 (492) 184 protein:vir:105889 Length: 474 96.8 0.00036 2.2E-07 39.5 27.7 359 1-383 21-467 (474) 185 protein:vir:94101 Length: 474 96.8 0.00036 2.2E-07 39.5 27.7 359 1-383 21-467 (474) 186 protein:vir:2500 Length: 501 # 96.7 0.0004 2.5E-07 39.2 23.2 359 1-383 29-492 (501) 187 protein:vir:97447 Length: 474 96.7 0.00041 2.6E-07 39.1 29.0 357 1-383 33-472 (474) 188 protein:vir:94498 Length: 474 96.7 0.00041 2.6E-07 39.1 29.0 357 1-383 33-472 (474) 189 protein:vir:2732 Length: 501 # 96.7 0.00042 2.6E-07 39.1 27.5 367 1-383 37-496 (501) 190 protein:vir:78537 Length: 480 96.6 0.00045 2.8E-07 38.9 27.3 365 1-383 1-466 (480) 191 protein:vir:80680 Length: 441 96.6 0.00045 2.8E-07 38.9 26.7 361 1-383 6-440 (441) 192 protein:vir:9306 Length: 511 # 96.5 0.00053 3.3E-07 38.5 25.5 375 1-383 46-502 (511) 193 protein:vir:105292 Length: 478 96.5 0.00061 3.8E-07 38.2 25.1 355 1-383 32-476 (478) 194 protein:vir:97336 Length: 492 96.4 0.00061 3.8E-07 38.2 28.9 356 1-383 50-490 (492) 195 protein:vir:3964 Length: 453 # 96.4 0.00071 4.4E-07 37.8 25.6 359 1-383 19-446 (453) 196 protein:vir:102950 Length: 471 96.3 0.00078 4.8E-07 37.6 24.5 363 1-383 11-467 (471) 197 protein:vir:106639 Length: 481 96.1 0.0011 6.6E-07 36.9 28.3 375 1-383 6-480 (481) 198 protein:vir:4898 Length: 502 # 95.9 0.0013 8.2E-07 36.4 29.9 374 1-383 31-489 (502) 199 protein:vir:96494 Length: 501 95.8 0.0015 9.3E-07 36.1 28.9 367 1-383 38-496 (501) 200 protein:vir:103951 Length: 511 95.7 0.0016 1E-06 35.9 28.1 375 1-383 46-502 (511) 201 protein:vir:98883 Length: 517 95.5 0.002 1.2E-06 35.4 25.2 371 1-383 1-517 (517) 202 protein:vir:96366 Length: 511 95.5 0.002 1.2E-06 35.4 27.4 375 1-383 46-498 (511) 203 protein:vir:78805 Length: 511 95.5 0.002 1.2E-06 35.4 27.4 375 1-383 46-498 (511) 204 protein:vir:96839 Length: 474 95.4 0.0022 1.4E-06 35.2 27.3 356 1-383 28-471 (474) 205 protein:vir:96266 Length: 474 95.2 0.0025 1.5E-06 34.9 28.0 358 1-383 46-472 (474) 206 protein:vir:95899 Length: 474 95.2 0.0025 1.5E-06 34.9 28.0 358 1-383 46-472 (474) 207 protein:vir:97171 Length: 512 95.0 0.003 1.8E-06 34.4 28.6 375 1-383 42-511 (512) 208 protein:vir:96240 Length: 511 94.9 0.0032 2E-06 34.3 28.0 375 1-383 46-498 (511) 209 protein:vir:733 Length: 453 # 94.9 0.0032 2E-06 34.2 27.1 368 1-383 23-450 (453) 210 protein:vir:96179 Length: 468 94.2 0.0052 3.2E-06 33.1 26.6 353 1-383 32-466 (468) 211 protein:vir:99522 Length: 470 94.1 0.0053 3.3E-06 33.1 28.7 362 1-383 19-470 (470) 212 protein:vir:105461 Length: 470 94.0 0.0057 3.5E-06 32.9 26.4 352 1-383 7-470 (470) 213 protein:vir:94546 Length: 506 93.9 0.006 3.7E-06 32.8 27.1 370 1-383 28-504 (506) 214 protein:vir:99781 Length: 511 93.6 0.0069 4.3E-06 32.4 29.2 375 1-383 46-511 (511) 215 protein:vir:106571 Length: 499 93.2 0.0086 5.3E-06 31.9 28.8 363 1-383 22-474 (499) 216 protein:vir:107112 Length: 478 92.8 0.0099 6.2E-06 31.6 28.7 361 1-383 23-476 (478) 217 protein:vir:78083 Length: 537 92.5 0.011 6.9E-06 31.3 26.6 365 1-383 8-517 (537) 218 protein:vir:9871 Length: 429 # 92.3 0.012 7.3E-06 31.1 26.9 350 1-383 7-424 (429) 219 protein:vir:9922 Length: 489 # 91.3 0.017 1E-05 30.3 22.6 364 1-383 21-483 (489) 220 protein:vir:3609 Length: 452 # 90.7 0.019 1.2E-05 30.0 28.8 354 1-383 17-451 (452) 221 protein:vir:105154 Length: 525 86.9 0.043 2.6E-05 28.1 12.6 355 1-383 51-511 (525) 222 protein:vir:1785 Length: 555 # 81.6 0.084 5.2E-05 26.5 19.4 338 1-383 47-533 (555) 223 protein:vir:94956 Length: 452 80.8 0.091 5.7E-05 26.3 32.3 361 1-383 1-452 (452) 224 protein:vir:102330 Length: 451 61.6 0.35 0.00022 23.1 27.0 355 1-381 7-451 (451) 225 protein:vir:97265 Length: 513 52.6 0.55 0.00034 22.0 25.9 356 3-383 1-500 (513) 226 protein:vir:94709 Length: 522 49.0 0.65 0.0004 21.6 23.5 338 1-383 40-483 (522) 227 protein:vir:78696 Length: 542 47.9 0.69 0.00043 21.5 19.6 326 1-383 33-467 (542) 228 protein:vir:100039 Length: 522 40.7 0.96 0.0006 20.7 20.0 349 1-383 1-474 (522) 229 protein:vir:95149 Length: 501 40.0 0.99 0.00061 20.6 25.8 364 1-383 1-497 (501) 230 protein:vir:7017 Length: 515 # 31.7 1.5 0.00092 19.6 21.9 335 1-383 41-480 (515) 231 protein:vir:94599 Length: 641 29.5 1.7 0.001 19.4 12.8 332 1-383 155-543 (641) 232 protein:vir:80453 Length: 535 27.0 1.9 0.0012 19.1 25.4 362 1-383 32-520 (535) 233 protein:vir:80165 Length: 651 27.0 1.9 0.0012 19.1 19.1 346 1-383 153-595 (651) 234 protein:vir:103765 Length: 549 21.7 2.6 0.0016 18.3 17.5 351 1-383 1-486 (549) No 1 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=8.1e-97 Score=547.38 Aligned_cols=383 Identities=100% Similarity=1.402 Sum_probs=366.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCCC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESPS 80 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~PN 80 (383) ||||+++++.+++.++...++++.++....++.....++.+.++++++|++||++||++||++|++++++..+.|+++|| T Consensus 1 Mg~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ll~~PN 80 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESPS 80 (383) T ss_pred CCcccccccccccccccccccchhhhhhhccCccccccchhHhhcchHHHHHHHHHHHhhccCceeecccchhhhhhCCC Confidence 99999988888888888888888888888778888889999999999999999999999999999999999999999999 Q ss_pred ccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccc Q lcl|Aclame:pro 81 SLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQ 160 (383) Q Consensus 81 ~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~ 160 (383) ++||+++|++.++.+++++||||++++++.++++|++++++....+..+.+|++....++..++|++++|||+|+++.++ T Consensus 81 ~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~r~~~~~~ 160 (383) T protein:vir:10 81 SLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQ 160 (383) T ss_pred CCCCHHHHHHHHHHHhhhcCCeEEEEEcCceeEeecCcceEEEEEcCCceEEEEEEcCCceEEEEcccceEEeccCCCCc Confidence 99999999999999999999999999999999999999999999988888888888888888999999999999888888 Q ss_pred cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCce Q lcl|Aclame:pro 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFD 240 (383) Q Consensus 161 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~ 240 (383) .++.+|+||+.++...+....++.+++.++|+||++|+++++.++...++++.+++++.|++.++|.|+|+++++++|++ T Consensus 161 ~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~ 240 (383) T protein:vir:10 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFD 240 (383) T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCce Confidence 88889999999999999999999999999999999999999999988889999999999999999999999999999999 Q ss_pred eEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee Q lcl|Aclame:pro 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAPDL 320 (383) Q Consensus 241 ~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~ 320 (383) |+++++++.++|++.|++++.+++||++|||||++||..+.++.++++.||...+|..||.|+++.||++++++|+++++ T Consensus 241 ~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~~~~~ 320 (383) T protein:vir:10 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAPDL 320 (383) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceE Confidence 99999999999987899999999999999999999998887888889999999999999999999999999999999999 Q ss_pred eeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 321 ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 321 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +||++++++.|.+++++++++++++|++|+||+|+++|++|++++|++....+++++|||||| T Consensus 321 ~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~gGd~e 383 (383) T protein:vir:10 321 ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) T ss_pred EeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCcccccCCCcccCCCCCCC Confidence 999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=5.2e-96 Score=542.96 Aligned_cols=383 Identities=97% Similarity=1.379 Sum_probs=364.3 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCCC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESPS 80 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~PN 80 (383) ||||+++.+.+++.+......++.++..+.++.....++.+.++++++|++||++||++||++|++++++..+.|+++|| T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~~~~~~ll~~PN 80 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVASAHFKTENTATLNRLESPS 80 (385) T ss_pred CccccchhcccccccccccccchhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeeccchhhhhhcCC Confidence 99999987777777777777777777777777777889999999999999999999999999999999999999999999 Q ss_pred ccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccc Q lcl|Aclame:pro 81 SLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQ 160 (383) Q Consensus 81 ~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~ 160 (383) ++||+++|++.++.+++++||||+++.++.++++|+++.++....+..+..|++....++..++|++++|||||+++.++ T Consensus 81 ~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~eiihik~~~~~~ 160 (385) T protein:vir:10 81 SLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPQMVLRQDQMLHFRLMPDPQ 160 (385) T ss_pred CCCCHHHHHHHHHHHhhhcCCeEEEEEcCceeEeecCCceEEEEEcCCceEEEEEEcCCceEEEEccccEEEeccCCCCc Confidence 99999999999999999999999999999999999999999999999998888888888888999999999999988888 Q ss_pred cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCce Q lcl|Aclame:pro 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFD 240 (383) Q Consensus 161 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~ 240 (383) +++++|+||+.++..++....++.+++.++|+||++|+++++.++...++++++++++.|++.++|.|+|+++++++|++ T Consensus 161 ~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~ 240 (385) T protein:vir:10 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFD 240 (385) T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCce Confidence 88899999999999999999999999999999999999999999988888999999999999999999999999999999 Q ss_pred eEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee Q lcl|Aclame:pro 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAPDL 320 (383) Q Consensus 241 ~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~ 320 (383) |+++++++.++|+|.|++++++++||++|||||++||..+.++.++++.||+..+|.+||.|+++.|+++++++|+++++ T Consensus 241 ~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~l~~~~~ 320 (385) T protein:vir:10 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAPDL 320 (385) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceE Confidence 99999999999987899999999999999999999999888888888999999999999999999999999999999999 Q ss_pred eeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 321 ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 321 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +||+++++++|.+++++++++++++|++|+||+|+++|++|+|+++++....+.++++|||+. T Consensus 321 ~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~~~~~~~~~g~~~ 383 (385) T protein:vir:10 321 ELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTTQVKGGDEG 383 (385) T ss_pred EeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccccCcccccCCCCCC Confidence 999999999999999999999999999999999999999999999999999999999999887 No 3 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=6.1e-85 Score=482.28 Aligned_cols=376 Identities=14% Similarity=0.153 Sum_probs=306.6 Q ss_pred Ccccchhccccccccc---c-------ccc-----------cchhhhhhhccCcc--cccccHHHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN---M-------VYP-----------SNPAFFTTTVGGMQ--LSYVSALSALQNTNVYSVINRIA 57 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~---~-------~~~-----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~i~~ia 57 (383) ||||++|+++++.... . .++ .+..++..+.++.. ...++.+.++++++|++||++|| T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 9999998665432110 0 000 01112233333333 22478899999999999999999 Q ss_pred HhhccceeEeecc----------h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceee Q lcl|Aclame:pro 58 SDVSSAHFKTENT----------A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINY 123 (383) Q Consensus 58 ~~ia~~~~~v~~~----------~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~ 123 (383) ++||++|+++++. + .++|+.+||++||+++||+.++.+++++||+|+++.++. .+++|+++..+.+ T Consensus 81 ~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~L~pl~~~~v~~ 160 (431) T protein:vir:10 81 GTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDRGSAKG 160 (431) T ss_pred HhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCceEEEEEEcCceeEE Confidence 9999999998653 2 234567999999999999999999999999999998764 5788999988887 Q ss_pred eecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEE Q lcl|Aclame:pro 124 LPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTI 203 (383) Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~ 203 (383) ..+.++..+|++...++..+.|++++|||+|+++.+ +++|+||+.++..++.++.+++++..++|+||++|+++++. T Consensus 161 ~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~~d---g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~ 237 (431) T protein:vir:10 161 RLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSID---GVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEV 237 (431) T ss_pred EEcCCCeEEEEEEeCCceEEEEchhhEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEec Confidence 766666666666666677789999999999976654 56899999999999999999999999999999999999999 Q ss_pred cCcCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcccccc Q lcl|Aclame:pro 204 SNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTST 282 (383) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~ 282 (383) ++.+ ++++.+++++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....+ T Consensus 238 ~~~l-s~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~l-e~r~~~~~~Ia~~fgVPp~~lg~~~~~ 315 (431) T protein:vir:10 238 PKEL-SDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQI-ENRNHQIEEVARMYGVPRPLLMMDDTS 315 (431) T ss_pred CCCC-CHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhCCCCCC Confidence 9876 558889999999999988 6899999999999999999999999985 999999999999999999999975543 Q ss_pred ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC------ceeeeechhhhccCHHHHHHHHHHHHhCC----CcCHH Q lcl|Aclame:pro 283 ESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNA------PDLELDIKDMLDVDDSILINQVSNLAKSG----VLGAE 351 (383) Q Consensus 283 ~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G----~~t~n 351 (383) ++++.||+.. |+..||.||+++||++++++|++ .+++||++.++++|.+++++.++++++.| +||+| T Consensus 316 --t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~N 393 (431) T protein:vir:10 316 --WGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQN 393 (431) T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHH Confidence 5666676665 55669999999999999999975 36999999999999999999999998766 59999 Q ss_pred HHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 352 QAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 352 E~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) |+|+++|++|+++++.+....+.+....|+.. T Consensus 394 E~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~ 425 (431) T protein:vir:10 394 EVREMLDLPRADDPVADQLRNPMTQKQKGSGD 425 (431) T ss_pred HHHHHhCCCCCCCccccceecccccccCCCCC Confidence 99999999999764433444444544444333 No 4 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=1.4e-84 Score=480.37 Aligned_cols=376 Identities=16% Similarity=0.191 Sum_probs=309.0 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---------- 70 (383) ||||+++|+++.+...........+++..........++.+.++++++|++||++||++||++|+++++. T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~~~~ 80 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLKQRATG 80 (414) T ss_pred CchhhhhhccCccCcccchhhHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCceeeccc Confidence 9999999888655433222111111111111222345788999999999999999999999999998752 Q ss_pred -h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEEEEEEecCceEEEE Q lcl|Aclame:pro 71 -A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVL 145 (383) Q Consensus 71 -~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (383) + .++|+.+||++||+++||+.++.+++++||||+++++.. .+++|++|..+.+..+..+..+|.+...++....| T Consensus 81 ~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~ 160 (414) T protein:vir:44 81 ERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVPKLNSSWEPVYQVTFPDGSTDVL 160 (414) T ss_pred chHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCceEEEEECCCCcEEEEEEecCceEEEE Confidence 2 245667999999999999999999999999999988754 46788888888877666666666666666777889 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|+++.+ +++|.||+.++..++.++.+++++..++|+||++|+++++.++.+ ++++.+++++.|++.++ T Consensus 161 ~~~evih~~~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~ 236 (414) T protein:vir:44 161 SQEDIWHVRTLTLD---GLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTL-SDQAYERLKKDFEERHT 236 (414) T ss_pred ccccEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC-CHHHHHHHHHHHHHHhc Confidence 99999999976544 568999999999999999999999999999999999999999876 56888999999999998 Q ss_pred C-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 226 G-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLNSY 303 (383) Q Consensus 226 g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~p~ 303 (383) | .|+|+++++++|++|+++++++.|+|++ |.+++++++||++|||||++||....+ ++++.|++. .++..||.|+ T Consensus 237 g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgVpp~~l~~~~~~--t~~n~e~~~~~~~~~~l~P~ 313 (414) T protein:vir:44 237 GLGNAHRPMILEMGLDWKSMALNAEDSQFL-ETRKFQLEEICRLFRVPLHMVQNTDRA--TFNNIEELGLGFINYSLVPY 313 (414) T ss_pred CccccCcceecCCCceEEEccCChHHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--CcccHHHHHHHHHHHHHHHH Confidence 8 6889999999999999999999999975 999999999999999999999976554 455556555 4556799999 Q ss_pred HHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCC Q lcl|Aclame:pro 304 VNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNET 377 (383) Q Consensus 304 ~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~ 377 (383) +++||++|+++|+.. +++||.++++++|.+++++++++++++|+||+||+|+++|++|+|+||......+.... T Consensus 314 ~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~ 393 (414) T protein:vir:44 314 LTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTK 393 (414) T ss_pred HHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccccccccc Confidence 999999999999854 58999999999999999999999999999999999999999999999976644443222 Q ss_pred C--------CCCCC Q lcl|Aclame:pro 378 K--------GGDDK 383 (383) Q Consensus 378 ~--------gGd~~ 383 (383) + +||+- T Consensus 394 ~~~~~~~~~~~~~~ 407 (414) T protein:vir:44 394 PSDGSKAGKQKDNA 407 (414) T ss_pred CCccccCCCCCCCC Confidence 1 11111 No 5 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=2.1e-84 Score=479.36 Aligned_cols=375 Identities=20% Similarity=0.332 Sum_probs=304.2 Q ss_pred Ccccch----hcc----------------ccccccccccccch-h-hhhhhcc--CcccccccHHHHhhhHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTP----KNF----------------SKRNAKNMVYPSNP-A-FFTTTVG--GMQLSYVSALSALQNTNVYSVINRI 56 (383) Q Consensus 1 Mg~~~~----~~~----------------~~~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~i 56 (383) |.|++. +-| ++.+.++.+.+... . +.....+ +.....++...||++++|++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~I 80 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHH Confidence 333333 100 11122222222221 1 2222222 2234458889999999999999999 Q ss_pred HHhhccceeEeecch--------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeee Q lcl|Aclame:pro 57 ASDVSSAHFKTENTA--------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYL 124 (383) Q Consensus 57 a~~ia~~~~~v~~~~--------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~ 124 (383) |++||++|+++++.. .++|+.+|||+||+++||+.++.+++++||||++++++. .+++|++|..+.+. T Consensus 81 a~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:98 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEE Confidence 999999999997643 345678999999999999999999999999999998753 57888888888877 Q ss_pred ecCCceEEEEEEe----cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE Q lcl|Aclame:pro 125 PGNMGIVYTVLES----NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGK 200 (383) Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 200 (383) .+..+.++++... ..+..+.+++++|||+|+++.+ +++|+||+.++..++.++.++++++.++|+||++|+++ T Consensus 161 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~dviHir~~~~d---g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gi 237 (441) T protein:vir:98 161 LDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLD---GINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGI 237 (441) T ss_pred ECCCCcEEEEEEEeccCcceeeEEEccccEEEeccCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEE Confidence 6666655554433 2334578999999999976544 56899999999999999999999999999999999999 Q ss_pred EEEcCcCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 201 LTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG 279 (383) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~ 279 (383) |+.++.+.++++++++++.|++.++| .|+|+++|+++|++|++++++++|+|++ |.+++++++||++|||||++||.. T Consensus 238 l~~~~~~~~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~r~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:98 238 LKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLI-RENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHH-HHHHHhHHHHHHHhCCCHHHcCCC Confidence 99999988889999999999999988 6899999999999999999999999975 999999999999999999999863 Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 280 TSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQF 355 (383) Q Consensus 280 ~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~ 355 (383) .. +++.+|...+|.+||.||+++||++|+++|+. .+++||++.+++.|.+++++++++++++|++|+||+|+ T Consensus 317 ~~----~~s~~q~~~~y~~tl~P~~~~ie~~ln~~L~~~~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~ 392 (441) T protein:vir:98 317 TA----NMSITDANLDYLSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQ 392 (441) T ss_pred CC----CccHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 22 22346667788889999999999999999974 47999999999999999999999999999999999999 Q ss_pred HhCCCCccCCccccccCCC--------------------CCCCCCCCC Q lcl|Aclame:pro 356 ILTRSGFLPDNLPEFKPLT--------------------NETKGGDDK 383 (383) Q Consensus 356 ~~g~~p~~~~d~~~~~~~~--------------------~~~~gGd~~ 383 (383) ++|++|++++|.+....+. +..||||+- T Consensus 393 ~~gl~pi~gGd~~~~~~~~n~~~~~~~~~~q~~~~~~~~~~~kgGe~n 440 (441) T protein:vir:98 393 RDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEEN 440 (441) T ss_pred HhCCCCCCCCCcceEeecccccccccccccccccccccccccCCCCCC Confidence 9999999999864433222 245788665 No 6 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=3.4e-84 Score=478.16 Aligned_cols=375 Identities=20% Similarity=0.334 Sum_probs=304.1 Q ss_pred Ccccch----hcc----------------ccccccccccccch--hhhhhhcc--CcccccccHHHHhhhHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTP----KNF----------------SKRNAKNMVYPSNP--AFFTTTVG--GMQLSYVSALSALQNTNVYSVINRI 56 (383) Q Consensus 1 Mg~~~~----~~~----------------~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~i 56 (383) |.|++. +-| .+.+.++.+.+..+ .+...+.+ +.....++.+.|+++++|++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~I 80 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHH Confidence 333333 111 11122322222222 22222222 2233458889999999999999999 Q ss_pred HHhhccceeEeecch--------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeee Q lcl|Aclame:pro 57 ASDVSSAHFKTENTA--------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYL 124 (383) Q Consensus 57 a~~ia~~~~~v~~~~--------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~ 124 (383) |++||++|+++++.. .++|+.+||++||+++||+.++.+++++||||++++++. .+++|++|..+.+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:79 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEE Confidence 999999999987532 345667999999999999999999999999999998754 47888888888887 Q ss_pred ecCCceEEEEEEe----cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE Q lcl|Aclame:pro 125 PGNMGIVYTVLES----NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGK 200 (383) Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 200 (383) .+..+.++++... .....+.+++++|||+|+++.+ +++|+||++++..++.++.++++++.++|+||++|+++ T Consensus 161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~~d---g~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gi 237 (441) T protein:vir:79 161 SDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLD---GINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGI 237 (441) T ss_pred ECCCccEEEEEEEeccCCceeEEEEccccEEEeccCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEE Confidence 7766665554432 2334578999999999976544 56899999999999999999999999999999999999 Q ss_pred EEEcCcCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 201 LTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG 279 (383) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~ 279 (383) |+.++.+.++++++++++.|++.++| .|+|+++|+++|++|++++++++|+|++ |.+++++++||++|||||++||.. T Consensus 238 l~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:79 238 LKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLI-RENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred EEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHH-HHHHHhHHHHHHHhCCCHHHcCCC Confidence 99999988889999999999999988 6899999999999999999999999975 999999999999999999999863 Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 280 TSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQF 355 (383) Q Consensus 280 ~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~ 355 (383) .. +++.++...+|.+||.|++++||++|+++|+. .+++||++.+++.|.+++++++++++++|++|+||+|+ T Consensus 317 ~~----~~s~~q~~~~~~~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~ 392 (441) T protein:vir:79 317 TA----NMSITDANLDYLSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQ 392 (441) T ss_pred CC----CccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 22 22345667788889999999999999999974 47999999999999999999999999999999999999 Q ss_pred HhCCCCccCCccccccCCC--------------------CCCCCCCCC Q lcl|Aclame:pro 356 ILTRSGFLPDNLPEFKPLT--------------------NETKGGDDK 383 (383) Q Consensus 356 ~~g~~p~~~~d~~~~~~~~--------------------~~~~gGd~~ 383 (383) ++|++|++++|.+....+. ++.||||+- T Consensus 393 ~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~ 440 (441) T protein:vir:79 393 RDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEEN 440 (441) T ss_pred HhCCCCCCCCCcceEeecccccccccccccccccccccccccCCCCCC Confidence 9999999999864433222 234788666 No 7 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=3.4e-84 Score=478.16 Aligned_cols=375 Identities=20% Similarity=0.334 Sum_probs=304.1 Q ss_pred Ccccch----hcc----------------ccccccccccccch--hhhhhhcc--CcccccccHHHHhhhHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTP----KNF----------------SKRNAKNMVYPSNP--AFFTTTVG--GMQLSYVSALSALQNTNVYSVINRI 56 (383) Q Consensus 1 Mg~~~~----~~~----------------~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~i 56 (383) |.|++. +-| .+.+.++.+.+..+ .+...+.+ +.....++.+.|+++++|++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~I 80 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHH Confidence 333333 111 11122322222222 22222222 2233458889999999999999999 Q ss_pred HHhhccceeEeecch--------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeee Q lcl|Aclame:pro 57 ASDVSSAHFKTENTA--------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYL 124 (383) Q Consensus 57 a~~ia~~~~~v~~~~--------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~ 124 (383) |++||++|+++++.. .++|+.+||++||+++||+.++.+++++||||++++++. .+++|++|..+.+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:94 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEE Confidence 999999999987532 345667999999999999999999999999999998754 47888888888887 Q ss_pred ecCCceEEEEEEe----cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE Q lcl|Aclame:pro 125 PGNMGIVYTVLES----NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGK 200 (383) Q Consensus 125 ~~~~~~~~~~~~~----~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 200 (383) .+..+.++++... .....+.+++++|||+|+++.+ +++|+||++++..++.++.++++++.++|+||++|+++ T Consensus 161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~~d---g~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gi 237 (441) T protein:vir:94 161 SDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSLD---GINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGI 237 (441) T ss_pred ECCCccEEEEEEEeccCCceeEEEEccccEEEeccCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEE Confidence 7766665554432 2334578999999999976544 56899999999999999999999999999999999999 Q ss_pred EEEcCcCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 201 LTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG 279 (383) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~ 279 (383) |+.++.+.++++++++++.|++.++| .|+|+++|+++|++|++++++++|+|++ |.+++++++||++|||||++||.. T Consensus 238 l~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:94 238 LKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLI-RENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred EEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHH-HHHHHhHHHHHHHhCCCHHHcCCC Confidence 99999988889999999999999988 6899999999999999999999999975 999999999999999999999863 Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 280 TSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQF 355 (383) Q Consensus 280 ~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~ 355 (383) .. +++.++...+|.+||.|++++||++|+++|+. .+++||++.+++.|.+++++++++++++|++|+||+|+ T Consensus 317 ~~----~~s~~q~~~~~~~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~ 392 (441) T protein:vir:94 317 TA----NMSITDANLDYLSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQ 392 (441) T ss_pred CC----CccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 22 22345667788889999999999999999974 47999999999999999999999999999999999999 Q ss_pred HhCCCCccCCccccccCCC--------------------CCCCCCCCC Q lcl|Aclame:pro 356 ILTRSGFLPDNLPEFKPLT--------------------NETKGGDDK 383 (383) Q Consensus 356 ~~g~~p~~~~d~~~~~~~~--------------------~~~~gGd~~ 383 (383) ++|++|++++|.+....+. ++.||||+- T Consensus 393 ~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~ 440 (441) T protein:vir:94 393 RDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEEN 440 (441) T ss_pred HhCCCCCCCCCcceEeecccccccccccccccccccccccccCCCCCC Confidence 9999999999864433222 234788666 No 8 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=8.9e-84 Score=475.90 Aligned_cols=372 Identities=17% Similarity=0.226 Sum_probs=306.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---------- 70 (383) ||||++++...+........+++.+. .+.+ ...++.+.++++++|++||++||++||++|+++++. T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~-~~~g---~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~ 76 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLL-QWLG---VDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERGIVKSDR 76 (411) T ss_pred CchHHHHHhhccCcccccccchHHHH-HHhc---CcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCceeeecc Confidence 99999975433333333333444433 3322 234678899999999999999999999999998743 Q ss_pred -h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc-------eEEEEEEec Q lcl|Aclame:pro 71 -A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG-------IVYTVLESN 138 (383) Q Consensus 71 -~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 138 (383) + .++|+.+||++||+++|++.++.+++++||||++++++. .+++|++|..+.+..++.+ ..|.+.... T Consensus 77 ~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 156 (411) T protein:vir:81 77 EELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSGPQLQALWILPSQYVTIVVDDRGLLGEKNAIWYRYNDPY 156 (411) T ss_pred cHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCceEEEEEECCceEEEEEcCcccccccceEEEEEEecC Confidence 2 234556899999999999999999999999999998763 3567777777766655432 233444445 Q ss_pred CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHH Q lcl|Aclame:pro 139 DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESARE 218 (383) Q Consensus 139 ~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~ 218 (383) ++..+.+++++|||+|+... .++++|+||+.++..++....++.++..++|+||++|+++|+.++.+ ++++++++++ T Consensus 157 ~g~~~~~~~~eiih~k~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~ 233 (411) T protein:vir:81 157 DGKMYVFRNDEILHFKTSVT--FDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDL-NQEARDRLVK 233 (411) T ss_pred CceEEEEccccEEEEcCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC-CHHHHHHHHH Confidence 66778899999999996433 33678999999999999999999999999999999999999998876 5688899999 Q ss_pred HHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHH Q lcl|Aclame:pro 219 EFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATY 296 (383) Q Consensus 219 ~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~ 296 (383) .|++.++| .|+|+++++++|++|++++++++|+|++ |.+++.+++||++|||||++||..++++ +++.|++. .++ T Consensus 234 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~t--~~n~e~~~~~f~ 310 (411) T protein:vir:81 234 GFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFF-ELKKYTALQIAAAFGIKPNQINDYEKSS--YASAEAQNLAFY 310 (411) T ss_pred HHHHHhcCccccCCceecCCCceEEEccCCHHHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCCC--chhHHHHHHHHH Confidence 99999988 5889999999999999999999999975 9999999999999999999999776553 45555555 566 Q ss_pred HHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccc Q lcl|Aclame:pro 297 LANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE 369 (383) Q Consensus 297 ~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~ 369 (383) ..||.|++++||++|+++|++ .+++||+++++++|.+++++++++++++|++|+||+|+++|++|+|+||.+. T Consensus 311 ~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~ 390 (411) T protein:vir:81 311 VDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLM 390 (411) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeee Confidence 679999999999999999974 3689999999999999999999999999999999999999999999999766 Q ss_pred ccCCCCC--------CCCCCC Q lcl|Aclame:pro 370 FKPLTNE--------TKGGDD 382 (383) Q Consensus 370 ~~~~~~~--------~~gGd~ 382 (383) ...+..+ .||||. T Consensus 391 ~~~n~~pl~~~~~~~~kgGd~ 411 (411) T protein:vir:81 391 ANGNYIPLSMLGANYGKGGDS 411 (411) T ss_pred eccCccchhhhhhhhccCCCC Confidence 5544433 379999 No 9 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=1e-83 Score=475.59 Aligned_cols=370 Identities=20% Similarity=0.336 Sum_probs=306.1 Q ss_pred Ccccchhccccccccccccc-cc-hhhhhhhcc--CcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch----- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYP-SN-PAFFTTTVG--GMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA----- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~----- 71 (383) ||||++..++ ....+ .+ ..+.....+ +.....++...++++++|++||++||+++|++||++++.. T Consensus 1 Mg~f~~~~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~~ 75 (416) T protein:vir:45 1 MGIFYKNEKR-----DLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYS 75 (416) T ss_pred CCcccccccc-----cccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCcccccc Confidence 9999864322 11111 11 122222222 3344467889999999999999999999999999987632 Q ss_pred ---hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEe----cCc Q lcl|Aclame:pro 72 ---TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLES----NDR 140 (383) Q Consensus 72 ---~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 140 (383) .++|+.+|||+||+++||+.++.+++++||||++++++. .+++|++|.++.+..+..+.++++... ... T Consensus 76 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 155 (416) T protein:vir:45 76 DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNN 155 (416) T ss_pred chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCce Confidence 334667999999999999999999999999999998754 468889898888877766665554432 223 Q ss_pred eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) Q Consensus 141 ~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (383) ..+.+++++|||+|+++.+ +++|.||+.++..++.++.++++++.++|+||++|+++++.++...++++++++++.| T Consensus 156 ~~~~~~~~evihir~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~ 232 (416) T protein:vir:45 156 IERNVKFEDMLDIKFYSLD---GINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEF 232 (416) T ss_pred eEEEEccccEEEeccCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHH Confidence 4578999999999976544 5789999999999999999999999999999999999999999888889999999999 Q ss_pred HHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (383) Q Consensus 221 ~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~t 299 (383) ++.++| .|+|+++|+++|++|++++++++|+|++ |.+++.+++||++|||||.+||.... +++.++...+|.+| T Consensus 233 ~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~----~~~~~~~~~~~~~~ 307 (416) T protein:vir:45 233 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLI-RENKSSTREIAGVFGIPLHKFGIETA----NMSITDANLDYLST 307 (416) T ss_pred HHHhcCccccCceeecCCCceeEeccCCHHHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCC----CccHHHHHHHHHHH Confidence 999988 6899999999999999999999999975 99999999999999999999986322 22346667788889 Q ss_pred HHHHHHHHHHHHHhhcCC----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC- Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNA----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT- 374 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~- 374 (383) |.|++++|+++|+++|++ .+++||++.+++.|.+++++++++++++|+||+||+|+++|++|++++|.+....+. T Consensus 308 l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n 387 (416) T protein:vir:45 308 LKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 387 (416) T ss_pred HHHHHHHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999999974 579999999999999999999999999999999999999999999999853322221 Q ss_pred -------------------CCCCCCCCC Q lcl|Aclame:pro 375 -------------------NETKGGDDK 383 (383) Q Consensus 375 -------------------~~~~gGd~~ 383 (383) ++.||||+- T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~kgGe~n 415 (416) T protein:vir:45 388 HVNIELVDEYQMNKSRATDKKLKGGEEN 415 (416) T ss_pred ccccccccccCcccccccccccCCCCCC Confidence 245788665 No 10 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=1e-83 Score=475.59 Aligned_cols=370 Identities=20% Similarity=0.336 Sum_probs=306.1 Q ss_pred Ccccchhccccccccccccc-cc-hhhhhhhcc--CcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch----- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYP-SN-PAFFTTTVG--GMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA----- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~----- 71 (383) ||||++..++ ....+ .+ ..+.....+ +.....++...++++++|++||++||+++|++||++++.. T Consensus 1 Mg~f~~~~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~~ 75 (416) T protein:vir:81 1 MGIFYKNEKR-----DLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYS 75 (416) T ss_pred CCcccccccc-----cccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCcccccc Confidence 9999864322 11111 11 122222222 3344467889999999999999999999999999987632 Q ss_pred ---hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEe----cCc Q lcl|Aclame:pro 72 ---TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLES----NDR 140 (383) Q Consensus 72 ---~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 140 (383) .++|+.+|||+||+++||+.++.+++++||||++++++. .+++|++|.++.+..+..+.++++... ... T Consensus 76 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 155 (416) T protein:vir:81 76 DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNN 155 (416) T ss_pred chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCce Confidence 334667999999999999999999999999999998754 468889898888877766665554432 223 Q ss_pred eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) Q Consensus 141 ~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (383) ..+.+++++|||+|+++.+ +++|.||+.++..++.++.++++++.++|+||++|+++++.++...++++++++++.| T Consensus 156 ~~~~~~~~evihir~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~ 232 (416) T protein:vir:81 156 IERNVKFEDMLDIKFYSLD---GINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEF 232 (416) T ss_pred eEEEEccccEEEeccCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHH Confidence 4578999999999976544 5789999999999999999999999999999999999999999888889999999999 Q ss_pred HHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (383) Q Consensus 221 ~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~t 299 (383) ++.++| .|+|+++|+++|++|++++++++|+|++ |.+++.+++||++|||||.+||.... +++.++...+|.+| T Consensus 233 ~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~----~~~~~~~~~~~~~~ 307 (416) T protein:vir:81 233 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLI-RENKSSTREIAGVFGIPLHKFGIETA----NMSITDANLDYLST 307 (416) T ss_pred HHHhcCccccCceeecCCCceeEeccCCHHHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCC----CccHHHHHHHHHHH Confidence 999988 6899999999999999999999999975 99999999999999999999986322 22346667788889 Q ss_pred HHHHHHHHHHHHHhhcCC----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC- Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNA----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT- 374 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~- 374 (383) |.|++++|+++|+++|++ .+++||++.+++.|.+++++++++++++|+||+||+|+++|++|++++|.+....+. T Consensus 308 l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n 387 (416) T protein:vir:81 308 LKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 387 (416) T ss_pred HHHHHHHHHHHHhhhccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999999974 579999999999999999999999999999999999999999999999853322221 Q ss_pred -------------------CCCCCCCCC Q lcl|Aclame:pro 375 -------------------NETKGGDDK 383 (383) Q Consensus 375 -------------------~~~~gGd~~ 383 (383) ++.||||+- T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~kgGe~n 415 (416) T protein:vir:81 388 HVNIELVDEYQMNKSRATDKKLKGGEEN 415 (416) T ss_pred ccccccccccCcccccccccccCCCCCC Confidence 245788665 No 11 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=3.2e-83 Score=472.87 Aligned_cols=377 Identities=18% Similarity=0.210 Sum_probs=307.8 Q ss_pred Ccccchhcccc-ccc-cccccccchhhhhhhccCc-ccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch------ Q lcl|Aclame:pro 1 MGLLTPKNFSK-RNA-KNMVYPSNPAFFTTTVGGM-QLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA------ 71 (383) Q Consensus 1 Mg~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~------ 71 (383) ||||+++|... ++. ..........++..+.+.. ....++.+.++++++|++||++||++||++|+++++.. T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~~~~ 80 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYGIQR 80 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHHHHHhcCCCCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCceee Confidence 99999987532 222 2222222223334443322 23347789999999999999999999999999987532 Q ss_pred ------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc-----eEEEEEE Q lcl|Aclame:pro 72 ------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG-----IVYTVLE 136 (383) Q Consensus 72 ------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 136 (383) .++|+.+|||+||+++||+.++.+++++||||+++.++. .+++|+++.++.+..++.+ ...++.. T Consensus 81 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~~~~ 160 (429) T protein:vir:10 81 GTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWYVV 160 (429) T ss_pred ccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEEEEE Confidence 234557999999999999999999999999999998753 5788888888877665432 2233445 Q ss_pred ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 137 SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 137 ~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) ..++..+.+++++|||+|+... .++.+|.||+.++..++..+.++.++..++|+||++|+++++.++.+ ++++.+++ T Consensus 161 ~~~g~~~~~~~~evih~~~~~~--~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l-~~e~~~~~ 237 (429) T protein:vir:10 161 NTGGQQRVLKPEEILHFKNGIT--LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL-NEDAKKVF 237 (429) T ss_pred ccCCeEEEEccccEEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC-CHHHHHHH Confidence 5566678999999999996543 23578999999999999999999999999999999999999998876 56788999 Q ss_pred HHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-H Q lcl|Aclame:pro 217 REEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-A 294 (383) Q Consensus 217 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~ 294 (383) ++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |.+++.+++||++|||||++||....++ +++.|++. . T Consensus 238 ~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~sn~e~~~~~ 314 (429) T protein:vir:10 238 RENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFL-ENTELTIRQIATAFGIKMHQLNDLSKAT--LNNIEQQQQQ 314 (429) T ss_pred HHHHHHHhccccccCceeecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHHHHH Confidence 9999999988 6889999999999999999999999975 9999999999999999999999766554 44555555 5 Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc Q lcl|Aclame:pro 295 TYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL 367 (383) Q Consensus 295 ~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~ 367 (383) ++..||.||+++|+++++++|++ .+++||++.+++.|.+++++++++++++|++|+||+|+++|++|+|++|. T Consensus 315 f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~ 394 (429) T protein:vir:10 315 FYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR 394 (429) T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe Confidence 56679999999999999999974 36899999999999999999999999999999999999999999999997 Q ss_pred ccccCCCC--------CCCCCCCC Q lcl|Aclame:pro 368 PEFKPLTN--------ETKGGDDK 383 (383) Q Consensus 368 ~~~~~~~~--------~~~gGd~~ 383 (383) .....+.. .+||||+- T Consensus 395 ~~~~~n~~~~d~~~~~~~k~g~~~ 418 (429) T protein:vir:10 395 LLVNGNMLPIDMAGQAYLKGGDTN 418 (429) T ss_pred eeecccccchhhccccccCCCCCC Confidence 66555432 35677654 No 12 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=1.5e-83 Score=474.65 Aligned_cols=376 Identities=15% Similarity=0.190 Sum_probs=307.6 Q ss_pred Ccccchhccc--cccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc-------- Q lcl|Aclame:pro 1 MGLLTPKNFS--KRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT-------- 70 (383) Q Consensus 1 Mg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~-------- 70 (383) =|||+++... ..........+....+. +.+......|+.+.|+++++|++||++||++||++|+++++. T Consensus 14 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~ 92 (424) T protein:vir:18 14 NGWWARLQSWFVGGRLVTPNQGSQTGPVS-AHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQNDNRKK 92 (424) T ss_pred CchHHHHHhhhcccccccccccccccccc-cccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecCCceee Confidence 5777765321 11111111111111111 111122335789999999999999999999999999998642 Q ss_pred -----hh-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCc Q lcl|Aclame:pro 71 -----AT-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDR 140 (383) Q Consensus 71 -----~~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383) +. ++|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|..+.+..+++...|. +. .++ T Consensus 93 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~~~~~y~-~~-~~g 170 (424) T protein:vir:18 93 VDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYR-YQ-RDS 170 (424) T ss_pred eccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEE-EE-eCC Confidence 22 34567899999999999999999999999999998753 57889998888877665544433 33 345 Q ss_pred eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) Q Consensus 141 ~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (383) ..+.|++++|||+|+++.+ +++|+||+.++..++.++.++++++.++|+||++|+++++.++...++++++++++.| T Consensus 171 ~~~~~~~~eIih~r~~~~d---g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~ 247 (424) T protein:vir:18 171 EYADFSQKEIFHLKGFGFT---GLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENF 247 (424) T ss_pred eEEEeccccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHH Confidence 6678999999999987654 5689999999999999999999999999999999999999988777889999999999 Q ss_pred HHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLAN 299 (383) Q Consensus 221 ~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~t 299 (383) ++.++|.|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||....++.++++.||+. .++..| T Consensus 248 ~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~t 326 (424) T protein:vir:18 248 KEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMM-ASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYT 326 (424) T ss_pred HHHhCCcccCCceeccCCceEEecCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHH Confidence 9999988999999999999999999999999975 99999999999999999999998877777777777655 555679 Q ss_pred HHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCC Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPL 373 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~ 373 (383) |.||+++||++|+++|++. +++||+++++++|.++|++++++++++|+||+||+|+++|++|+|+||......+ T Consensus 327 l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~~~~~n 406 (424) T protein:vir:18 327 LQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVAMRQSQ 406 (424) T ss_pred HHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccC Confidence 9999999999999999864 5999999999999999999999999999999999999999999999998776666 Q ss_pred CCCCC-CCCCC Q lcl|Aclame:pro 374 TNETK-GGDDK 383 (383) Q Consensus 374 ~~~~~-gGd~~ 383 (383) ..++. -|+++ T Consensus 407 ~~~l~~~~~~~ 417 (424) T protein:vir:18 407 YVPITDLGTNK 417 (424) T ss_pred ccchHhhhccC Confidence 55543 12222 No 13 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=2.3e-83 Score=473.62 Aligned_cols=376 Identities=15% Similarity=0.196 Sum_probs=306.6 Q ss_pred Ccccchhccccccccccccccchhhhhh--hccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTT--TVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA------- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~------- 71 (383) =|||+++...-.. +....+........ +.+......++.+.|+++++|++||++||++||++|+++++.. T Consensus 14 ~g~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~~~~~ 92 (424) T protein:vir:18 14 NGWWARLKSWFVG-GRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQNDNRKK 92 (424) T ss_pred CchHHHHHhhccc-cccccccchhhccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeccCCceee Confidence 4555554211001 11111111111111 1111122347889999999999999999999999999987421 Q ss_pred -------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCc Q lcl|Aclame:pro 72 -------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDR 140 (383) Q Consensus 72 -------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383) .++|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|..+.+..+++... |.+. .++ T Consensus 93 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~-y~~~-~~g 170 (424) T protein:vir:18 93 VDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVV-YRYQ-RDS 170 (424) T ss_pred eccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEE-EEEE-eCC Confidence 234667899999999999999999999999999998753 578888888888776655444 3333 345 Q ss_pred eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) Q Consensus 141 ~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (383) ....|++++|||+|+++.+ +++|+||+..+...+.++.++++++.++|+||++|+++++.++...++++++++++.| T Consensus 171 ~~~~~~~~eVihir~~~~d---g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~ 247 (424) T protein:vir:18 171 EYADFSQKEIFHLKGFGFT---GLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENF 247 (424) T ss_pred eEEEeccccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHHHHH Confidence 6678999999999976654 5689999999999999999999999999999999999999988777889999999999 Q ss_pred HHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLAN 299 (383) Q Consensus 221 ~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~t 299 (383) ++.+++.|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....++.++++.||+. .++..| T Consensus 248 ~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~t 326 (424) T protein:vir:18 248 KEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMM-ASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYT 326 (424) T ss_pred HHHhCCcccCCceeccCCceEEecCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHH Confidence 9999888999999999999999999999999975 99999999999999999999998887777777777665 555679 Q ss_pred HHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCC Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPL 373 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~ 373 (383) |.||+++||++|+++|++. +++||+++++++|.+++++++++++++|+||+||+|+++|++|+|++|......+ T Consensus 327 l~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~n 406 (424) T protein:vir:18 327 LQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVAMRQAQ 406 (424) T ss_pred HHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccC Confidence 9999999999999999854 5999999999999999999999999999999999999999999999998877777 Q ss_pred CCCCCC-CCCC Q lcl|Aclame:pro 374 TNETKG-GDDK 383 (383) Q Consensus 374 ~~~~~g-Gd~~ 383 (383) ..++.. |+++ T Consensus 407 ~~~l~~~~~~~ 417 (424) T protein:vir:18 407 YVPITDLGTNK 417 (424) T ss_pred ccchhhhhccC Confidence 666542 3222 No 14 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=3.2e-83 Score=472.85 Aligned_cols=376 Identities=20% Similarity=0.237 Sum_probs=311.2 Q ss_pred Ccccchhcccccccccc---------ccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNM---------VYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~ 71 (383) ||||+++|.++.+.... ...++..++..++ ......++.+.++++++|++||++||++||++|+++++.. T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~~~ 79 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFG-IKLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYKDK 79 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhcc-ccCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEecC Confidence 99999998876644321 1223334444443 3334458889999999999999999999999999986533 Q ss_pred --------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc------eEEE Q lcl|Aclame:pro 72 --------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG------IVYT 133 (383) Q Consensus 72 --------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~ 133 (383) .++|+.+|||+||+++|++.++.+++++||||+++.++. .+++|++|..+.+..+.++ ..+| T Consensus 80 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~~~~y 159 (422) T protein:vir:13 80 EEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLSKVWY 159 (422) T ss_pred cccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccceEEE Confidence 344667999999999999999999999999999998753 5788888888887766554 3445 Q ss_pred EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 134 VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 134 ~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) .+...++..+.+++++|||+|... ..++++|.||+.++..++..+.++++++.++|+||++|+++++.++.+ ++++. T Consensus 160 ~~~~~~g~~~~~~~~eiih~~~~~--~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~ 236 (422) T protein:vir:13 160 VVTDKNGKEHKLLPDEMLHFIGDI--TLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDL-DEKAK 236 (422) T ss_pred EEEeCCCeEEEEcccceEEEcCCC--CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC-CHHHH Confidence 555566777889999999999643 233678999999999999999999999999999999999999999876 56788 Q ss_pred HHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-H Q lcl|Aclame:pro 214 ESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-Q 291 (383) Q Consensus 214 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~ 291 (383) +++++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++.+++||++|||||++||..+.++ +++.| + T Consensus 237 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~~fgVpp~~lg~~~~~~--~sn~e~~ 313 (422) T protein:vir:13 237 KIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFL-ENSKLTKRELAATFGMKSYHLNDLERAT--FNNLTEQ 313 (422) T ss_pred HHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHH Confidence 9999999999988 5789999999999999999999999975 9999999999999999999999776654 34444 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 292 IKATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 292 ~~~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) ...++..||.|++++||++|+++|++ .+++||+++++++|.+++++++++++++|+||+||+|+++|++|+++ T Consensus 314 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~g 393 (422) T protein:vir:13 314 QKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEG 393 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 45566779999999999999999974 36899999999999999999999999999999999999999999999 Q ss_pred CccccccCCCCCC--------CCCCCC Q lcl|Aclame:pro 365 DNLPEFKPLTNET--------KGGDDK 383 (383) Q Consensus 365 ~d~~~~~~~~~~~--------~gGd~~ 383 (383) +|......+..++ +||++= T Consensus 394 gD~~~~~~n~~~l~~~~~~~~~~g~~~ 420 (422) T protein:vir:13 394 GDRLLVNGNMIPIEMAGEQYKKGGEKG 420 (422) T ss_pred cCeeeeccCccchhhcccccccCCCcC Confidence 9976555544332 233222 No 15 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=2.5e-83 Score=473.43 Aligned_cols=379 Identities=17% Similarity=0.228 Sum_probs=301.9 Q ss_pred Ccccchhcccccccccc------ccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNM------VYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--- 71 (383) ||||+++|+++.++... ..+..+..+...........|+.+.+|++++|++||++||++||++|+++++.. T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCCc Confidence 99999998775544321 122222222222222233468899999999999999999999999999987532 Q ss_pred --------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecC--C--ceEEEEE- Q lcl|Aclame:pro 72 --------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGN--M--GIVYTVL- 135 (383) Q Consensus 72 --------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~--~--~~~~~~~- 135 (383) ...|+.+||++||+++||+.++.+++++||||+++.+.. ..++|++|.++.+.... . ...++.+ T Consensus 81 ~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~ 160 (457) T protein:vir:62 81 RKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) T ss_pred cccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCcceEEEEeccCCccceeEEEEE Confidence 456888999999999999999999999999999987753 35677777776654322 1 1222222 Q ss_pred E-ecCce--EEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHH Q lcl|Aclame:pro 136 E-SNDRP--KMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKD 212 (383) Q Consensus 136 ~-~~~~~--~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~ 212 (383) . ..+.. ...|++++|||||+++.++ .++|+||+.++..++..+.++++++.++|+||++|+++|+.++.+ ++++ T Consensus 161 ~~~~g~~~~~~~~~~~eiih~r~~~~~~--~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-s~e~ 237 (457) T protein:vir:62 161 IDADGNEVLLGWFTPRDVLHIPGMMLPG--DFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM-SEEG 237 (457) T ss_pred EccCCceeEEEeeCccceEEecCCCCCC--ceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCC-CHHH Confidence 2 22222 2468999999999876554 368999999999999999999999999999999999999999876 5688 Q ss_pred HHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH Q lcl|Aclame:pro 213 LESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ 291 (383) Q Consensus 213 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~ 291 (383) ++++++.|++.++| .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||....++.++++.|+ T Consensus 238 ~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq 316 (457) T protein:vir:62 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL-QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) T ss_pred HHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHH Confidence 99999999999988 6889999999999999999999999975 999999999999999999999988887777777776 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 292 IK-ATYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 292 ~~-~~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) +. .|+..||.||+++||++|+++|++. +++||++.++++|.+++++++++++++|+||+||+|+++|++|+++ T Consensus 317 ~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~ 396 (457) T protein:vir:62 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 65 4556799999999999999999853 5899999999999999999999999999999999999999999998 Q ss_pred CccccccCCCCCCCCC-----------------------CCC Q lcl|Aclame:pro 365 DNLPEFKPLTNETKGG-----------------------DDK 383 (383) Q Consensus 365 ~d~~~~~~~~~~~~gG-----------------------d~~ 383 (383) +..+....+.+..+-| +++ T Consensus 397 g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457) T protein:vir:62 397 GLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE 438 (457) T ss_pred CCcceeeeccccccccccccccccCCCccCCCCccCCCCCCC Confidence 7222222221111100 000 No 16 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=3.1e-83 Score=472.96 Aligned_cols=378 Identities=16% Similarity=0.167 Sum_probs=315.6 Q ss_pred Cc-ccchhcc-ccccc--------cccccccchhhhhhhccCcccc--cccHHHHhhhHHHHHHHHHHHHhhccceeEee Q lcl|Aclame:pro 1 MG-LLTPKNF-SKRNA--------KNMVYPSNPAFFTTTVGGMQLS--YVSALSALQNTNVYSVINRIASDVSSAHFKTE 68 (383) Q Consensus 1 Mg-~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~ 68 (383) |. -|.++.. ..... ....+.+++.++..+.++.+.+ .++.+.++++++|++||++||++||++|++++ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~ 80 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVY 80 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 31 1111111 11111 1223345666777666554433 57889999999999999999999999999996 Q ss_pred cch-------------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEE Q lcl|Aclame:pro 69 NTA-------------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVY 132 (383) Q Consensus 69 ~~~-------------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 132 (383) +.. .++|+.+||++||+++||+.++.+++++||+|+++.++. .+++|++|..+.+..+.++..+ T Consensus 81 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~~G~~~~L~~l~p~~v~~~~~~~g~~~ 160 (434) T protein:vir:43 81 ERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRAAGRPAALDFLLPSRVDLECDENGRLK 160 (434) T ss_pred EEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCcceEEEEcCCCeEE Confidence 532 234567999999999999999999999999999987754 4678899988888887777777 Q ss_pred EEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHH Q lcl|Aclame:pro 133 TVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKD 212 (383) Q Consensus 133 ~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~ 212 (383) |++...++..+++++++|||+|+++.+ +++|+||+..+..++..+.+++++..++|+||++|+++++.++.+ ++++ T Consensus 161 y~~~~~~g~~~~~~~~eVih~~~~~~d---g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~ 236 (434) T protein:vir:43 161 YFYTTKKGARREIERTNMLHIPAFTLD---GRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRIL-QPAQ 236 (434) T ss_pred EEEEecCceEEEEccccEEEecCcCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCC-CHHH Confidence 777777778899999999999976544 568999999999999999999999999999999999999999876 4678 Q ss_pred HHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH Q lcl|Aclame:pro 213 LESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI 292 (383) Q Consensus 213 ~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~ 292 (383) .+++++.|++..++.|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||..+.++.++++.|++ T Consensus 237 ~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~ 315 (434) T protein:vir:43 237 REEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLL-ETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQ 315 (434) T ss_pred HHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHH Confidence 899999999887778999999999999999999999999975 9999999999999999999999887777677777776 Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCC Q lcl|Aclame:pro 293 KA-TYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPD 365 (383) Q Consensus 293 ~~-~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~ 365 (383) .. |+..||.||+++||++|+++|++. +++||++.++++|.+++++++++++++|++|+||+|+++|++|+|++ T Consensus 316 ~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~gg 395 (434) T protein:vir:43 316 MLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPGG 395 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 65 556799999999999999999753 69999999999999999999999999999999999999999999999 Q ss_pred ccccccCCCCCCCCCCCC Q lcl|Aclame:pro 366 NLPEFKPLTNETKGGDDK 383 (383) Q Consensus 366 d~~~~~~~~~~~~gGd~~ 383 (383) |.+....+..+++..+++ T Consensus 396 D~~~~~~n~~~~~~~~~~ 413 (434) T protein:vir:43 396 DILTVQSNLVPIDQLGQS 413 (434) T ss_pred CeEeeccCccchhhhhcc Confidence 987766665555433322 No 17 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=5.7e-83 Score=471.48 Aligned_cols=373 Identities=15% Similarity=0.158 Sum_probs=303.8 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---------- 70 (383) +.||++||+++.... ...+....++...........+|.+.|+++++|++||++||++||++|+++++. T Consensus 16 ~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~~~~~~~ 94 (424) T protein:vir:45 16 RVLLDALFRSKSLEN-PSTPITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKGKVEPARD 94 (424) T ss_pred hHHHHhhccccCCCC-CccccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCCceeeccc Confidence 889998887654332 222222222211111122335889999999999999999999999999998742 Q ss_pred -hh-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceEEE Q lcl|Aclame:pro 71 -AT-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMV 144 (383) Q Consensus 71 -~~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (383) +. ++|+.+|||+||+++||+.++.+++++||+|+++.++. .+++|++|..+.+..+++...|.+... ..... T Consensus 95 ~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~~~--~~~~~ 172 (424) T protein:vir:45 95 HPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGGRYTYGLYNE--YGAFA 172 (424) T ss_pred chHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCCeEEEEEEec--CceEE Confidence 22 34567999999999999999999999999999988743 578999998888877766655544333 33567 Q ss_pred EchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 145 LRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKAN 224 (383) Q Consensus 145 ~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (383) +++++|||+|+++.+ +++|+||+.++...+..+.++++++.++|+||++|+++++.++.+ ++++++++++.|++.+ T Consensus 173 ~~~~eVih~r~~~~d---~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~ 248 (424) T protein:vir:45 173 ISPDDMIHIRALGNN---QKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGL-NKESWGWLKDQWQKAS 248 (424) T ss_pred ECcccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC-CHHHHHHHHHHHHHHh Confidence 999999999976654 568999999999999999999999999999999999999999876 5688899999999998 Q ss_pred cC--cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-HHHHHHH Q lcl|Aclame:pro 225 TG--DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TYLANLN 301 (383) Q Consensus 225 ~g--~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~~~~tl~ 301 (383) +| .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||....+ ++++.||+.. ++..||. T Consensus 249 ~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--t~sn~eq~~~~f~~~tL~ 325 (424) T protein:vir:45 249 QALRRQENKTMLLPADLDYKALTVSPVDAQII-DMMKLNRSMIAGIFNIPAHMINDLEKA--TFSNISAQAIQFVRYTMM 325 (424) T ss_pred ccccccCCceeEcCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--CcccHHHHHHHHHHHHHH Confidence 87 4789999999999999999999999975 999999999999999999999986655 4455666554 5566999 Q ss_pred HHHHHHHHHHHhhcCCc-------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC Q lcl|Aclame:pro 302 SYVNPIVDELRLKMNAP-------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT 374 (383) Q Consensus 302 p~~~~i~~~l~~~l~~~-------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~ 374 (383) ||++.||++|+++|+++ +++||+++++++|.+++++++++++++|+||+||+|+++|++|++++|......+. T Consensus 326 P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~~~n~ 405 (424) T protein:vir:45 326 PWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLVSVNA 405 (424) T ss_pred HHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccc Confidence 99999999999999753 59999999999999999999999999999999999999999999999875544332 Q ss_pred CCC---------CCC-CCC Q lcl|Aclame:pro 375 NET---------KGG-DDK 383 (383) Q Consensus 375 ~~~---------~gG-d~~ 383 (383) .+. .+| .|+ T Consensus 406 ~~~~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 406 ANPAGDFKPPKNDEGKTNE 424 (424) T ss_pred cccccccCCCCCCCCCCCC Confidence 211 112 111 No 18 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=6.4e-83 Score=471.19 Aligned_cols=378 Identities=18% Similarity=0.214 Sum_probs=307.4 Q ss_pred Cccc-chhcccccc-----ccccccccchhhhhhhccCccc--ccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc-- Q lcl|Aclame:pro 1 MGLL-TPKNFSKRN-----AKNMVYPSNPAFFTTTVGGMQL--SYVSALSALQNTNVYSVINRIASDVSSAHFKTENT-- 70 (383) Q Consensus 1 Mg~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~-- 70 (383) |.-- .+++.+.+. .....+.+++.++..|.+.... ..++.+.++++|+|++||++||++||++|++++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~~~ 80 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQTKP 80 (437) T ss_pred CCcchhhhhhhhHHhhhhhcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEEcC Confidence 6521 122111111 1123445566666666544333 34788999999999999999999999999998642 Q ss_pred ----------h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEEEEEE Q lcl|Aclame:pro 71 ----------A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVYTVLE 136 (383) Q Consensus 71 ----------~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383) + .++|+.+||++||+++|++.++.+++++||||+++.++. .+++|++|..+.+..+..+..+|++. T Consensus 81 ~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~g~~~~L~~l~p~~v~i~~~~~g~~~y~~~ 160 (437) T protein:vir:10 81 DGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSAGVLIGLELMLPQRTTVKRLTSGALQYTYR 160 (437) T ss_pred CCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCcceEEEECCCCeEEEEEE Confidence 2 244567999999999999999999999999999998864 45788888888887776666666666 Q ss_pred ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 137 SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 137 ~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) ..++....+++++|||+|+++.+ +++|+||+.++..++..+.+++++..++|+||++|+++|+.++.+ ++++.+++ T Consensus 161 ~~~g~~~~~~~~dIih~r~~~~d---~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~ 236 (437) T protein:vir:10 161 NVDGTVSTLAEDDVFHVRGFSLD---GLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQIL-QKEKRAEI 236 (437) T ss_pred ecCceEEEEccccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC-CHHHHHHH Confidence 66677789999999999976654 578999999999999999999999999999999999999998876 56788999 Q ss_pred HHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH- Q lcl|Aclame:pro 217 REEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA- 294 (383) Q Consensus 217 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~- 294 (383) ++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....++.++++.|++.. T Consensus 237 ~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~ 315 (437) T protein:vir:10 237 RTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLL-ETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLG 315 (437) T ss_pred HHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHH Confidence 9999999888 6899999999999999999999999975 999999999999999999999988887777777776665 Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccc Q lcl|Aclame:pro 295 TYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLP 368 (383) Q Consensus 295 ~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~ 368 (383) ++..||.||+++||++|+++|+++ +++||+++++++|.+++++++++++++|++|+||+|+++|++|+++++.. T Consensus 316 f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~ 395 (437) T protein:vir:10 316 FLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAV 395 (437) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcce Confidence 556799999999999999999853 68999999999999999999999999999999999999999999977642 Q ss_pred cc-cCCCCCC----------------CCCC---CC Q lcl|Aclame:pro 369 EF-KPLTNET----------------KGGD---DK 383 (383) Q Consensus 369 ~~-~~~~~~~----------------~gGd---~~ 383 (383) .. .....++ ++|| |+ T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (437) T protein:vir:10 396 LTVQSALLPIDKLGEHTTATAAQDALKAWLYQEEK 430 (437) T ss_pred EeecCcccchhhccCcCCCcchhccccccCCCCCC Confidence 21 1111111 1111 11 No 19 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=1.2e-82 Score=469.62 Aligned_cols=377 Identities=18% Similarity=0.213 Sum_probs=306.0 Q ss_pred Ccccchh-----ccccccccccccccchhhhhhhccCc-ccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MGLLTPK-----NFSKRNAKNMVYPSNPAFFTTTVGGM-QLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) ||||+|+ |+++..............+..|.+.. ....++.+.++++++|++||++||++||++|+++++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 9999987 22232222222222222333333322 2335788999999999999999999999999998643 Q ss_pred -------hhh-hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc-----eEEE Q lcl|Aclame:pro 71 -------ATL-NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG-----IVYT 133 (383) Q Consensus 71 -------~~~-~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~ 133 (383) +.. +|+.+||++||+++|++.++.+++++||||+++.++. .+++|++|.++.+..++.+ ...+ T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 223 4556999999999999999999999999999998753 5788888888877655332 2334 Q ss_pred EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 134 VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 134 ~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) +....++..+.+++++|||+|+..+ .++.+|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+ ++++. T Consensus 161 y~~~~~g~~~~~~~~eiih~r~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l-~~e~~ 237 (432) T protein:vir:10 161 YVVNTGGQQRVLKPEEILHFKNGIT--LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL-NEDAK 237 (432) T ss_pred EEEecCCeEEEEccccEEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC-CHHHH Confidence 4555667778999999999996432 33678999999999999999999999999999999999999998876 56788 Q ss_pred HHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH Q lcl|Aclame:pro 214 ESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI 292 (383) Q Consensus 214 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~ 292 (383) +++++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....++ +++.|++ T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~s~~e~~ 314 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFL-ENTELTIRQIATAFGIKMHQLNDLSKAT--LNNIEQQ 314 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHH Confidence 9999999999988 6889999999999999999999999975 9999999999999999999999766554 4445555 Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 293 K-ATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 293 ~-~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) . .++..||.|++++||++|+++|++ .+++||++.++++|.+++++++++++++|++|+||+|+++|++|+|+ T Consensus 315 ~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g 394 (432) T protein:vir:10 315 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 4 556679999999999999999974 36899999999999999999999999999999999999999999999 Q ss_pred CccccccCCCC--------CCCCCCCC Q lcl|Aclame:pro 365 DNLPEFKPLTN--------ETKGGDDK 383 (383) Q Consensus 365 ~d~~~~~~~~~--------~~~gGd~~ 383 (383) +|......+.. .+||||+- T Consensus 395 gD~~~~~~n~~~~~~~~~~~~k~~~~~ 421 (432) T protein:vir:10 395 GDRLLVNGNMLPIDMAGQAYLKGGDTN 421 (432) T ss_pred CCeEeecccccchhhccccccCCCCCC Confidence 99766655543 33566532 No 20 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=1.2e-82 Score=469.62 Aligned_cols=377 Identities=18% Similarity=0.213 Sum_probs=306.0 Q ss_pred Ccccchh-----ccccccccccccccchhhhhhhccCc-ccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MGLLTPK-----NFSKRNAKNMVYPSNPAFFTTTVGGM-QLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) ||||+|+ |+++..............+..|.+.. ....++.+.++++++|++||++||++||++|+++++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 9999987 22232222222222222333333322 2335788999999999999999999999999998643 Q ss_pred -------hhh-hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc-----eEEE Q lcl|Aclame:pro 71 -------ATL-NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG-----IVYT 133 (383) Q Consensus 71 -------~~~-~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~ 133 (383) +.. +|+.+||++||+++|++.++.+++++||||+++.++. .+++|++|.++.+..++.+ ...+ T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 223 4556999999999999999999999999999998753 5788888888877655332 2334 Q ss_pred EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 134 VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 134 ~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) +....++..+.+++++|||+|+..+ .++.+|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+ ++++. T Consensus 161 y~~~~~g~~~~~~~~eiih~r~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l-~~e~~ 237 (432) T protein:vir:10 161 YVVNTGGQQRVLKPEEILHFKNGIT--LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL-NEDAK 237 (432) T ss_pred EEEecCCeEEEEccccEEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC-CHHHH Confidence 4555667778999999999996432 33678999999999999999999999999999999999999998876 56788 Q ss_pred HHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH Q lcl|Aclame:pro 214 ESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI 292 (383) Q Consensus 214 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~ 292 (383) +++++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....++ +++.|++ T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~s~~e~~ 314 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFL-ENTELTIRQIATAFGIKMHQLNDLSKAT--LNNIEQQ 314 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHH Confidence 9999999999988 6889999999999999999999999975 9999999999999999999999766554 4445555 Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 293 K-ATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 293 ~-~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) . .++..||.|++++||++|+++|++ .+++||++.++++|.+++++++++++++|++|+||+|+++|++|+|+ T Consensus 315 ~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g 394 (432) T protein:vir:10 315 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 4 556679999999999999999974 36899999999999999999999999999999999999999999999 Q ss_pred CccccccCCCC--------CCCCCCCC Q lcl|Aclame:pro 365 DNLPEFKPLTN--------ETKGGDDK 383 (383) Q Consensus 365 ~d~~~~~~~~~--------~~~gGd~~ 383 (383) +|......+.. .+||||+- T Consensus 395 gD~~~~~~n~~~~~~~~~~~~k~~~~~ 421 (432) T protein:vir:10 395 GDRLLVNGNMLPIDMAGQAYLKGGDTN 421 (432) T ss_pred CCeEeecccccchhhccccccCCCCCC Confidence 99766655543 33566532 No 21 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=1.2e-82 Score=469.62 Aligned_cols=377 Identities=18% Similarity=0.213 Sum_probs=306.0 Q ss_pred Ccccchh-----ccccccccccccccchhhhhhhccCc-ccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MGLLTPK-----NFSKRNAKNMVYPSNPAFFTTTVGGM-QLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) ||||+|+ |+++..............+..|.+.. ....++.+.++++++|++||++||++||++|+++++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 9999987 22232222222222222333333322 2335788999999999999999999999999998643 Q ss_pred -------hhh-hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc-----eEEE Q lcl|Aclame:pro 71 -------ATL-NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG-----IVYT 133 (383) Q Consensus 71 -------~~~-~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~ 133 (383) +.. +|+.+||++||+++|++.++.+++++||||+++.++. .+++|++|.++.+..++.+ ...+ T Consensus 81 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~~ 160 (432) T protein:vir:10 81 IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMW 160 (432) T ss_pred eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEE Confidence 223 4556999999999999999999999999999998753 5788888888877655332 2334 Q ss_pred EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 134 VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 134 ~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) +....++..+.+++++|||+|+..+ .++.+|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+ ++++. T Consensus 161 y~~~~~g~~~~~~~~eiih~r~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l-~~e~~ 237 (432) T protein:vir:10 161 YVVNTGGQQRVLKPEEILHFKNGIT--LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL-NEDAK 237 (432) T ss_pred EEEecCCeEEEEccccEEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC-CHHHH Confidence 4555667778999999999996432 33678999999999999999999999999999999999999998876 56788 Q ss_pred HHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH Q lcl|Aclame:pro 214 ESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI 292 (383) Q Consensus 214 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~ 292 (383) +++++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....++ +++.|++ T Consensus 238 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVP~~~lg~~~~~~--~s~~e~~ 314 (432) T protein:vir:10 238 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFL-ENTELTIRQIATAFGIKMHQLNDLSKAT--LNNIEQQ 314 (432) T ss_pred HHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCCC--cccHHHH Confidence 9999999999988 6889999999999999999999999975 9999999999999999999999766554 4445555 Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 293 K-ATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 293 ~-~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) . .++..||.|++++||++|+++|++ .+++||++.++++|.+++++++++++++|++|+||+|+++|++|+|+ T Consensus 315 ~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g 394 (432) T protein:vir:10 315 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 4 556679999999999999999974 36899999999999999999999999999999999999999999999 Q ss_pred CccccccCCCC--------CCCCCCCC Q lcl|Aclame:pro 365 DNLPEFKPLTN--------ETKGGDDK 383 (383) Q Consensus 365 ~d~~~~~~~~~--------~~~gGd~~ 383 (383) +|......+.. .+||||+- T Consensus 395 gD~~~~~~n~~~~~~~~~~~~k~~~~~ 421 (432) T protein:vir:10 395 GDRLLVNGNMLPIDMAGQAYLKGGDTN 421 (432) T ss_pred CCeEeecccccchhhccccccCCCCCC Confidence 99766655543 33566532 No 22 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=3e-82 Score=467.49 Aligned_cols=375 Identities=15% Similarity=0.224 Sum_probs=306.4 Q ss_pred ccchhccccccccccccccchhhhhh-------hccC-cccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--- Q lcl|Aclame:pro 3 LLTPKNFSKRNAKNMVYPSNPAFFTT-------TVGG-MQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--- 71 (383) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--- 71 (383) +||.+++.+++.+........+|... +.+. .....|+.+.++++++|++||++||++||++|+++++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g 80 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC Confidence 89988776666554433322222111 1111 112347889999999999999999999999999997532 Q ss_pred ---------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEec Q lcl|Aclame:pro 72 ---------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESN 138 (383) Q Consensus 72 ---------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383) ...|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|.++.+..++++.++|.+... T Consensus 81 ~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~~~~~ 160 (454) T protein:vir:93 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) T ss_pred ccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEEEEEEec Confidence 356889999999999999999999999999999998753 4789999998888777666555544433 Q ss_pred C----ceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHH Q lcl|Aclame:pro 139 D----RPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLE 214 (383) Q Consensus 139 ~----~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~ 214 (383) . +....+++++|||+|+.. ..++++|+||+..+...+..+.+++++..++|+||++|+++++.++.+ ++++.+ T Consensus 161 ~~~~~~~~~~~~~~eViH~k~~~--~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~ 237 (454) T protein:vir:93 161 RNCGITEAVTVPAREVIHDRFNC--FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI-TEENAK 237 (454) T ss_pred cccccceeEEecCcceEEeccCC--CCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCC-CHHHHH Confidence 2 345689999999999633 233678999999999999999999999999999999999999999876 568889 Q ss_pred HHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH- Q lcl|Aclame:pro 215 SAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK- 293 (383) Q Consensus 215 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~- 293 (383) ++++.|++.++|.|+|+++|+++|++|++++++++|+|++ |++++.+++||++|||||++||....+ ++++.|++. T Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--t~sn~e~~~~ 314 (454) T protein:vir:93 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTV-EQLKMTAEIVCSVFRVPAYKIGVGQPP--SSDNVEALEQ 314 (454) T ss_pred HHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCCC--cchhHHHHHH Confidence 9999999999999999999999999999999999999986 999999999999999999999976555 455666665 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC---ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccc Q lcl|Aclame:pro 294 ATYLANLNSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (383) Q Consensus 294 ~~~~~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~ 370 (383) .++..||.||++.||++++++|+. .+++||+++++++|.+++++++.+++++|++|+||+|+++|++|++++|.... T Consensus 315 ~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~ 394 (454) T protein:vir:93 315 QYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYL 394 (454) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeee Confidence 455679999999999999999974 47999999999999999999999999999999999999999999999886543 Q ss_pred cCCCCCCC------------CCCCC Q lcl|Aclame:pro 371 KPLTNETK------------GGDDK 383 (383) Q Consensus 371 ~~~~~~~~------------gGd~~ 383 (383) .....+++ ..+++ T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (454) T protein:vir:93 395 QQQNYSLEALSRRDAREDPFASSGK 419 (454) T ss_pred ccCccchHhhhccCcccCCCCCCcc Confidence 33322211 00111 No 23 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=7.4e-82 Score=465.38 Aligned_cols=379 Identities=16% Similarity=0.229 Sum_probs=302.3 Q ss_pred Ccccchhcccccccc------ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK------NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--- 71 (383) ||||+++|++..+.. ....+.++.++...........|+.+.++++++|++||++||++||++|+++++.. T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGS 80 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999999987654432 12333455544443333444568999999999999999999999999999998642 Q ss_pred --------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecC--Cc--eEEEEE- Q lcl|Aclame:pro 72 --------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGN--MG--IVYTVL- 135 (383) Q Consensus 72 --------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~--~~--~~~~~~- 135 (383) ...+++.||..||+++||+.++.+++++||||+++.+.. ..++|++|.++.+.... +. ..|+.+ T Consensus 81 ~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~y~ 160 (457) T protein:vir:13 81 RKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQGPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEAYD 160 (457) T ss_pred ccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEccCceEEEEecCCCccceeEEEEE Confidence 234455565689999999999999999999999987753 45677777766654322 21 222222 Q ss_pred Ee-cCc--eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHH Q lcl|Aclame:pro 136 ES-NDR--PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKD 212 (383) Q Consensus 136 ~~-~~~--~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~ 212 (383) +. .+. ....|++++|||+|+++.++ .++|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+ ++++ T Consensus 161 ~~~~~~~~~~~~~~~~diih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-s~e~ 237 (457) T protein:vir:13 161 IDADGNEVLLGWFTPRDVLHIPGMMLPG--DFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTM-SEEG 237 (457) T ss_pred EecCCceeeEEeeCccceEEecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCC-CHHH Confidence 22 222 23468999999999876654 368999999999999999999999999999999999999999876 5688 Q ss_pred HHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH Q lcl|Aclame:pro 213 LESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ 291 (383) Q Consensus 213 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~ 291 (383) ++++++.|++.++| .|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||....++.++++.|| T Consensus 238 ~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq 316 (457) T protein:vir:13 238 LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFL-QTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) T ss_pred HHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHH Confidence 99999999999988 6889999999999999999999999975 999999999999999999999988877777777776 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 292 IKA-TYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 292 ~~~-~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) +.. |+..||.||++.||++|+++|+++ +++||+++++++|.+++++++++++++|+||+||+|+++|++|+++ T Consensus 317 ~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~ 396 (457) T protein:vir:13 317 QNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPD 396 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 664 556799999999999999999864 5899999999999999999999999999999999999999999998 Q ss_pred CccccccCCCCCCCCCCC-------------------------------C Q lcl|Aclame:pro 365 DNLPEFKPLTNETKGGDD-------------------------------K 383 (383) Q Consensus 365 ~d~~~~~~~~~~~~gGd~-------------------------------~ 383 (383) +..+....+.+.++-|+. + T Consensus 397 g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 446 (457) T protein:vir:13 397 GLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDE 446 (457) T ss_pred CcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccc Confidence 732222222221111100 0 No 24 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=1.8e-81 Score=463.20 Aligned_cols=375 Identities=17% Similarity=0.207 Sum_probs=304.1 Q ss_pred cccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch---------- Q lcl|Aclame:pro 2 GLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA---------- 71 (383) Q Consensus 2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~---------- 71 (383) =||+++|+++.............+++..........++.+.++++|+|++||++||++||++|+++++.. T Consensus 1 ~~f~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~~ 80 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPAELAEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLKTRVVDE 80 (413) T ss_pred CccchhhccCccCCccchHHHHHhhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcceeeccc Confidence 2344455554433322111111111111112233457889999999999999999999999999987432 Q ss_pred --hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEEEEEEecCceEEEEc Q lcl|Aclame:pro 72 --TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLR 146 (383) Q Consensus 72 --~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (383) .++|+.+||++||+++||+.++.+++++||||++++++. .+++|+++.++.+..+..+..+|++...++..+.++ T Consensus 81 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~ 160 (413) T protein:vir:48 81 RLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPIDPGCVEPKLNSQWQPVYQVTFPDGSVDVLT 160 (413) T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCCcEEEEEEEcCceEEEEEcCCceEEEEEEecCceEEEEc Confidence 234557899999999999999999999999999988753 468888888888777766666666666667778899 Q ss_pred hhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (383) Q Consensus 147 ~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 226 (383) +++|||+|+++.+ +++|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+ ++++.+++++.|++.++| T Consensus 161 ~~evih~~~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~-~~e~~~~~~~~~~~~~~g 236 (413) T protein:vir:48 161 QDEIWHVRTLTLD---GLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKL-TPDAYERLKKDFEERHTG 236 (413) T ss_pred cccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC-CHHHHHHHHHHHHHHhcC Confidence 9999999977654 468999999999999999999999999999999999999999876 568889999999999988 Q ss_pred -cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 227 -DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLNSYV 304 (383) Q Consensus 227 -~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~ 304 (383) .|+|+++++++|++|++++++++|+|++ |.+++.+++||++|||||++||....+ ++++.|++. .++..||.|++ T Consensus 237 ~~n~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--t~~n~e~~~~~f~~~~i~P~~ 313 (413) T protein:vir:48 237 LGNAHRPMILEMGLDWKSMALNAEDSQFL-ETRKFQLEEICRLFRVPLHMVQNTDRA--TFNNIEELGLGFINYSLVPYL 313 (413) T ss_pred ccccCcceecCCCceEEeccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCcCC--CcccHHHHHHHHHHHHHHHHH Confidence 6899999999999999999999999974 999999999999999999999976544 445555554 55567999999 Q ss_pred HHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCC- Q lcl|Aclame:pro 305 NPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNET- 377 (383) Q Consensus 305 ~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~- 377 (383) ++|+++|+++|+++ +++||++.++++|.+++++++++++++|++|+||+|+++|++|+|+||......+..+. T Consensus 314 ~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~ 393 (413) T protein:vir:48 314 TRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTSP 393 (413) T ss_pred HHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeccccccccc Confidence 99999999999853 69999999999999999999999999999999999999999999999986655443332 Q ss_pred ----------CCCCCC Q lcl|Aclame:pro 378 ----------KGGDDK 383 (383) Q Consensus 378 ----------~gGd~~ 383 (383) ++||+. T Consensus 394 ~~~~~~~~~~~~~~~~ 409 (413) T protein:vir:48 394 SAGDDNGKKKESGDAD 409 (413) T ss_pred cccccCCCCCCCCCcc Confidence 222222 No 25 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=2.1e-81 Score=462.86 Aligned_cols=374 Identities=14% Similarity=0.164 Sum_probs=301.4 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--------- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--------- 71 (383) ||||+|+|+++.+.+..+....-.. ...........++.+.++++++|++||++||++||++|+++++.. T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~ 79 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPS-PAEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNVRIPVSP 79 (409) T ss_pred CchhhhhhcCCCccccccccccccc-ccchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcccccch Confidence 9999999888765554333221100 001111223457889999999999999999999999999987532 Q ss_pred -hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEe-c----cceEEeecCcceeee--ecCCceEEEEEEecCceEE Q lcl|Aclame:pro 72 -TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVG-Q----NLEHIPNSDVQINYL--PGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 72 -~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~-~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 143 (383) .++|+.+||++||+++|++.++.+++++||+|+++.. + ..+++|++|.++.+. .+..+..+++....++ . T Consensus 80 l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~~~g--~ 157 (409) T protein:vir:84 80 APKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPVYRIDG--K 157 (409) T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEEecCCc--e Confidence 3446679999999999999999999999999998753 2 246777777776654 4444544554444443 4 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKA 223 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (383) ++++++|||+|+++.++ ..+|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+ ++++++++++.|.+. T Consensus 158 ~~~~~dvih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~ 234 (409) T protein:vir:84 158 VVPNHRIMHIKRYPVAG--CALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADL-TPDQVKQTQKQWIQS 234 (409) T ss_pred EEchhhEEEecCCCCCc--ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC-CHHHHHHHHHHHHHH Confidence 68999999999877654 357999999999999999999999999999999999999998866 567888999999876 Q ss_pred hcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHHH Q lcl|Aclame:pro 224 NTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLNS 302 (383) Q Consensus 224 ~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~p 302 (383) + .|+|+++|+++|++|+++++++.|+|++ |.+++.+++||++|||||++||....++.++++.|+.. .++..||.| T Consensus 235 ~--~n~g~~~vl~~g~~~~~~~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P 311 (409) T protein:vir:84 235 H--HNRRLPAVMSAGIKWQSVSITPNESQFL-ETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLP 311 (409) T ss_pred h--ccCCCeeecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHH Confidence 6 4678999999999999999999999975 99999999999999999999998877777777777666 455679999 Q ss_pred HHHHHHHHHHhhcC-CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCC--- Q lcl|Aclame:pro 303 YVNPIVDELRLKMN-APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETK--- 378 (383) Q Consensus 303 ~~~~i~~~l~~~l~-~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~--- 378 (383) |++.||++|+++|. +.+++||++.++++|.+++++++.+++++|+||+||+|+++|++|+|+||......+..+.+ T Consensus 312 ~~~~ie~~l~~~L~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~ 391 (409) T protein:vir:84 312 WLRCIEQALDTFLPRGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFVPLGYVP 391 (409) T ss_pred HHHHHHHHHHHhccCCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccCC Confidence 99999999999985 46799999999999999999999999999999999999999999999988655443333221 Q ss_pred ---CCC-CC Q lcl|Aclame:pro 379 ---GGD-DK 383 (383) Q Consensus 379 ---gGd-~~ 383 (383) +++ .+ T Consensus 392 ~~~~~~~~~ 400 (409) T protein:vir:84 392 PEEPAQEPQ 400 (409) T ss_pred ccccCcCCC Confidence 111 11 No 26 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=3.1e-81 Score=461.94 Aligned_cols=368 Identities=14% Similarity=0.182 Sum_probs=301.8 Q ss_pred Ccccchhccccccccccccccchhhhhhhc----cCccc--ccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTV----GGMQL--SYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) |.+++.+..+++. . +.+.+|..+. +..+. ..|+.+.++++++|++||++||++||++||++++. T Consensus 1 m~~~~~~~~~~~~-~-----s~~~~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g 74 (421) T protein:vir:10 1 MFIPQMFEGKKRS-V-----SGGGFWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNG 74 (421) T ss_pred CCCcchhcccccc-c-----CcchhhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC Confidence 9877665333322 1 1222332222 22222 24789999999999999999999999999998642 Q ss_pred --------h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEe Q lcl|Aclame:pro 71 --------A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLES 137 (383) Q Consensus 71 --------~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (383) + .++|+.+|||+||+++||+.++.+++++||||+++.++. .+++|++|..+.+..+..+.+++++.. T Consensus 75 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y~~~~ 154 (421) T protein:vir:10 75 GRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYYEIPE 154 (421) T ss_pred ceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEEEEcC Confidence 1 235667999999999999999999999999999998753 578999999888888877877766544 Q ss_pred cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC---CCHHHHH Q lcl|Aclame:pro 138 NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL---SDGKDLE 214 (383) Q Consensus 138 ~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~---~~~~~~~ 214 (383) .+ ..+++++|+|+|+++.+ +++|.||+.++..++..+.++++++.++|+||++|+++|+.+... .++++++ T Consensus 155 ~g---~~~~~~eiih~~~~~~d---~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~ 228 (421) T protein:vir:10 155 IG---ETLPMRMMHHVKVFSLD---GYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKID 228 (421) T ss_pred CC---cEEchhhEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHH Confidence 44 35899999999986654 568999999999999999999999999999999999999988644 3678899 Q ss_pred HHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH Q lcl|Aclame:pro 215 SAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK 293 (383) Q Consensus 215 ~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~ 293 (383) ++++.|++.++| .|+|+++++++|++|++++++++|+|++ |.+++.+++||++|||||++||....++ +++.|++. T Consensus 229 ~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~t--~sn~e~~~ 305 (421) T protein:vir:10 229 QLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLL-QSRQWGVEEVCRLYKIPPHMVQMLAKAT--NNNIEHQG 305 (421) T ss_pred HHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHcCCCcCCc--cccHHHHH Confidence 999999999988 5889999999999999999999999975 9999999999999999999999866553 45566655 Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc Q lcl|Aclame:pro 294 -ATYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN 366 (383) Q Consensus 294 -~~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d 366 (383) .++..||.|++++||++|+++|+.+ +++||++.++++|.+++++++++++++|+||+||+|+++|++|+++|| T Consensus 306 ~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD 385 (421) T protein:vir:10 306 LQFVMYTLLAWLKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGD 385 (421) T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 4556699999999999999999853 689999999999999999999999999999999999999999999999 Q ss_pred cccccCCCC----CCCCCCCC Q lcl|Aclame:pro 367 LPEFKPLTN----ETKGGDDK 383 (383) Q Consensus 367 ~~~~~~~~~----~~~gGd~~ 383 (383) ......+.. ..+++++. T Consensus 386 ~~~~~~n~~~~~~~~~~~~~~ 406 (421) T protein:vir:10 386 KYLTPLNMVDSAQIIPGDKKP 406 (421) T ss_pred eeeeccccccccccccCCCCc Confidence 755433321 12222211 No 27 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=2.6e-81 Score=462.35 Aligned_cols=375 Identities=16% Similarity=0.202 Sum_probs=297.0 Q ss_pred Ccccchh--cccccccccc-----ccccchhhh-hhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--- Q lcl|Aclame:pro 1 MGLLTPK--NFSKRNAKNM-----VYPSNPAFF-TTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--- 69 (383) Q Consensus 1 Mg~~~~~--~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--- 69 (383) ||||+|+ ++.+..+.+. .++...... ...........|+.+.++++|+|++||++||++||++|++++. T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeEEecC Confidence 9999985 2333322211 111111100 0111112233578999999999999999999999999999864 Q ss_pred --------chh-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEEEEEEe Q lcl|Aclame:pro 70 --------TAT-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVYTVLES 137 (383) Q Consensus 70 --------~~~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (383) |+. ++|+.+||++||+++||+.++.+++++||||+++.+.. .+++|+++..+.+..+..+..+|.+.. T Consensus 87 ~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~~ 166 (432) T protein:vir:81 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRLTITTDPKGNTAYRYRR 166 (432) T ss_pred CcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCCceEEEECCCCcEEEEEEe Confidence 222 34567999999999999999999999999999987753 467888888888877766666666666 Q ss_pred cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHH Q lcl|Aclame:pro 138 NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAR 217 (383) Q Consensus 138 ~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~ 217 (383) .++..+.+++++|+|+|+++.+ +++|+||+.++..++..+.++++++.++|+||++|+++++.++.+ +++++++++ T Consensus 167 ~~g~~~~~~~~~iih~r~~~~d---g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~ 242 (432) T protein:vir:81 167 TDGQMIDIPKQQIWKIMGYSLD---GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL-TDDQYDSFA 242 (432) T ss_pred cCceEEEEccccEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCC-CHHHHHHHH Confidence 6777889999999999977655 568999999999999999999999999999999999999998876 557777777 Q ss_pred HHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcccccccc-chhHHHHHHH-H Q lcl|Aclame:pro 218 EEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTES-QHSNIDQIKA-T 295 (383) Q Consensus 218 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~-~~~~~e~~~~-~ 295 (383) +.|+ ++.|+|+++++++|++|++++++++|+|++ |++++++++||++|||||++||..+.++. ++++.||+.. | T Consensus 243 ~~~~---~~~nag~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~f 318 (432) T protein:vir:81 243 KKVS---GSVEAGRAPLLEGGMDVKSLGLNPVDAQLL-QSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGF 318 (432) T ss_pred HHHh---hhhcCCCceecCCCceEEEccCCHHHHHHH-HHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHHH Confidence 7665 346889999999999999999999999975 99999999999999999999998765543 3466666554 5 Q ss_pred HHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccc Q lcl|Aclame:pro 296 YLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE 369 (383) Q Consensus 296 ~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~ 369 (383) +..||.||++.||++|+++|+++ +++||+++++++|.+++++++++++++|+||+||+|+++|++|+++++... T Consensus 319 ~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~~~~ 398 (432) T protein:vir:81 319 LTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVL 398 (432) T ss_pred HHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceE Confidence 55699999999999999999854 699999999999999999999999999999999999999999998765321 Q ss_pred -ccCCC------------CCCCCC-CCC Q lcl|Aclame:pro 370 -FKPLT------------NETKGG-DDK 383 (383) Q Consensus 370 -~~~~~------------~~~~gG-d~~ 383 (383) ..... .+.+|+ +++ T Consensus 399 ~~~~~~~pl~~~~~~~~~~~~~~~~n~~ 426 (432) T protein:vir:81 399 TVQSAMVPLDSIGLQASPEPASGLGNQQ 426 (432) T ss_pred eecCcccchhhhccCCCCCCCCCCCCcc Confidence 11111 111222 222 No 28 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=2.5e-81 Score=462.47 Aligned_cols=375 Identities=17% Similarity=0.202 Sum_probs=296.8 Q ss_pred Ccccchh--ccccccccc-----cccccchhhhhh-hccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc-- Q lcl|Aclame:pro 1 MGLLTPK--NFSKRNAKN-----MVYPSNPAFFTT-TVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT-- 70 (383) Q Consensus 1 Mg~~~~~--~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~-- 70 (383) ||+|+++ ++.+..+.+ ..++.+...... .........|+.+.++++++|++||++||++||++|++++.. T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:10 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEEecC Confidence 9999984 333333322 122222111111 111122335789999999999999999999999999998642 Q ss_pred ---------h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEEEEEEe Q lcl|Aclame:pro 71 ---------A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVYTVLES 137 (383) Q Consensus 71 ---------~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (383) + .++|+.+||++||+++||+.++.+++++||||++++++. .+++|++|..+.+..+..+..+|++.. T Consensus 87 ~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~~ 166 (432) T protein:vir:10 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRLTITTDTKGNTAYRYRR 166 (432) T ss_pred CCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCCceEEEEcCCCcEEEEEEe Confidence 2 234567999999999999999999999999999988753 467888888888877666666666666 Q ss_pred cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHH Q lcl|Aclame:pro 138 NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAR 217 (383) Q Consensus 138 ~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~ 217 (383) .++..+++++++|+|+|+++.+ +.+|+||+..+...+.++.++++++.++|+||++|+++++.++.+ +++++++++ T Consensus 167 ~~g~~~~~~~~~iih~~~~~~d---g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~ 242 (432) T protein:vir:10 167 TDGQMIDIPKQQIWKIMGYSLD---GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL-TDDQYDSFA 242 (432) T ss_pred cCceEEEEcCccEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCC-CHHHHHHHH Confidence 6777889999999999977654 568999999999999999999999999999999999999998876 557777777 Q ss_pred HHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccc-cchhHHHHHH-HH Q lcl|Aclame:pro 218 EEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTE-SQHSNIDQIK-AT 295 (383) Q Consensus 218 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~-~~~~~~e~~~-~~ 295 (383) +.|. ++.|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||..+.++ .++++.|++. .| T Consensus 243 ~~~~---~~~nag~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f 318 (432) T protein:vir:10 243 KKVS---GSVEAGRAPLLEGGMDVKSLGLNPVDAQLL-QSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGF 318 (432) T ss_pred HHHh---hhhhCCCceecCCCceEEEccCChHHHHHH-HHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHH Confidence 7665 336789999999999999999999999975 9999999999999999999999876543 3446666655 55 Q ss_pred HHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccc Q lcl|Aclame:pro 296 YLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE 369 (383) Q Consensus 296 ~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~ 369 (383) +..||.||+++||++|+++|+++ +++||+++++++|.++|++++++++++|+||+||+|+++|++|+++++... T Consensus 319 ~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~~ 398 (432) T protein:vir:10 319 LSMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVL 398 (432) T ss_pred HHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceE Confidence 56799999999999999999753 689999999999999999999999999999999999999999998765321 Q ss_pred c-cCCC------------CCCCCC-CCC Q lcl|Aclame:pro 370 F-KPLT------------NETKGG-DDK 383 (383) Q Consensus 370 ~-~~~~------------~~~~gG-d~~ 383 (383) . .... .+..|. +++ T Consensus 399 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~ 426 (432) T protein:vir:10 399 TVQSAMVPLDSIGLQASPEPASGLGNQQ 426 (432) T ss_pred eecCcccchhhhcccCCCCCCCCCCCcc Confidence 1 1111 111111 111 No 29 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=6.5e-81 Score=460.20 Aligned_cols=370 Identities=19% Similarity=0.247 Sum_probs=302.9 Q ss_pred CcccchhccccccccccccccchhhhhhhccCc-ccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc--------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGM-QLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT--------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~--------- 70 (383) |- |++.|+++.+.. +..+.. +..|.+.. ....++.+.++++++|++||++||++||++|+++++. T Consensus 1 m~-f~~~~~~~~~~~---~~~~~~-~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~ 75 (409) T protein:vir:10 1 ML-FRKGFKNQSQEI---SIDDKK-ILEWLGINPSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKDGIKRVPD 75 (409) T ss_pred Cc-ccccccCcCCCC---CCChHH-HHHHhcCCcCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCeeeccC Confidence 76 444444443322 222322 33343333 3346788999999999999999999999999998643 Q ss_pred -hh-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc------eEEEEEEec Q lcl|Aclame:pro 71 -AT-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG------IVYTVLESN 138 (383) Q Consensus 71 -~~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 138 (383) +. ++|+.+||++||+++||+.++.+++++||||++++++. .+++|++|.++.+..+..+ ..+|.+... T Consensus 76 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~~~~~ 155 (409) T protein:vir:10 76 HYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWYLYTDD 155 (409) T ss_pred chHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEEEEEEeC Confidence 22 33557999999999999999999999999999998754 4677887777766554332 334555556 Q ss_pred CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHH Q lcl|Aclame:pro 139 DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESARE 218 (383) Q Consensus 139 ~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~ 218 (383) .+..+.+++++|||+|+++.+ +++|+||+.++...+....++.+++.++|+||++|+++++.++.+ ++++.+++++ T Consensus 156 ~g~~~~~~~~evih~r~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~~ 231 (409) T protein:vir:10 156 LGQRHKFMSDEILHFKGLTAD---GLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDL-NPEAEEVFKE 231 (409) T ss_pred CceeEEeccccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCC-CHHHHHHHHH Confidence 667789999999999977654 568999999999999999999999999999999999999998876 5678899999 Q ss_pred HHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH-HHHHH Q lcl|Aclame:pro 219 EFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ-IKATY 296 (383) Q Consensus 219 ~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-~~~~~ 296 (383) .|++.++| .|+|+++|+++|++|++++.++.|+|++ |++++.+++||++|||||.+||....++ +++.|+ ...++ T Consensus 232 ~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~~~e~~~~~f~ 308 (409) T protein:vir:10 232 NFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFL-ENSQLTIRQIASVFGVKMHQLNDLDRAT--HSNITEQNREFY 308 (409) T ss_pred HHHHHhccccccCCceecCCCceEEEccCChhhHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCCCc--cccHHHHHHHHH Confidence 99999988 5789999999999999999999999975 9999999999999999999999766553 444444 44566 Q ss_pred HHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccc Q lcl|Aclame:pro 297 LANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE 369 (383) Q Consensus 297 ~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~ 369 (383) ..||.|++++||++|+++|+. .+++||+++++++|.+++++++++++++|++|+||+|+++|++|++++|.+. T Consensus 309 ~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~~ 388 (409) T protein:vir:10 309 IDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDVLL 388 (409) T ss_pred HHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee Confidence 679999999999999999874 3799999999999999999999999999999999999999999999998766 Q ss_pred ccCCCCC--------CCCCCC Q lcl|Aclame:pro 370 FKPLTNE--------TKGGDD 382 (383) Q Consensus 370 ~~~~~~~--------~~gGd~ 382 (383) ...+..+ .+||++ T Consensus 389 ~~~n~~~~~~~~~~~~kgGe~ 409 (409) T protein:vir:10 389 INGNMIPVKMAGEQYSKGGEK 409 (409) T ss_pred eccCccchhhccccccccCCC Confidence 5555443 346666 No 30 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=6.5e-81 Score=460.18 Aligned_cols=371 Identities=19% Similarity=0.259 Sum_probs=305.8 Q ss_pred cccchhccccccccccccccchhhhhhhccCcc--cccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------- Q lcl|Aclame:pro 2 GLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQ--LSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------- 71 (383) Q Consensus 2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------- 71 (383) =||+++|+++...........+.+...+.+... ...++.+.++++|+|++||++||++||++|+++++.. T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~~~~~ 80 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGGIERKP 80 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcccccc Confidence 377888877766555555444444444433332 2357889999999999999999999999999986432 Q ss_pred ----hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec----cceEEeecCcceeeeecCC-ceEEEEEEecCceE Q lcl|Aclame:pro 72 ----TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNM-GIVYTVLESNDRPK 142 (383) Q Consensus 72 ----~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 142 (383) ..+|+.+||++||+++|++.++.+++++||||+++.++ ..+++|++|.++.+..+.. +.+++.. ..++.. T Consensus 81 ~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~-~~~g~~ 159 (416) T protein:vir:12 81 EHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQT-VLNGKA 159 (416) T ss_pred ccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEEE-ecCCeE Confidence 34567899999999999999999999999999999874 3578888888887655443 4444444 445667 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) +.+++++|+|+|+++.+ +++|.||+.++..++..+.++.+++.++|+||+.|+++++.++.+ ++++++++++.|+. T Consensus 160 ~~~~~~eiih~~~~~~~---~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~-~~e~~~~~~~~~~~ 235 (416) T protein:vir:12 160 IELYDYEVLHFKGLSTD---GIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFL-DEKPKENVRKEWKR 235 (416) T ss_pred EEecCccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCC-CHHHHHHHHHHHHH Confidence 88999999999976654 568999999999999999999999999999999999999998865 66888999999987 Q ss_pred HhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHH Q lcl|Aclame:pro 223 ANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLN 301 (383) Q Consensus 223 ~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~ 301 (383) .. ++++++++++|++|+++++++.|+|++ |.+++.+++||++|||||++||....+ ++++.|+.. .++..||. T Consensus 236 ~~---~~~~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--t~sn~e~~~~~f~~~~l~ 309 (416) T protein:vir:12 236 VN---KVENIAIIDYGLEYQSISMPLQEAQFV-ESMKFNKAQISMIYKVPLHKLNELDKA--TFSNIEHQSIEYVRNTLQ 309 (416) T ss_pred Hh---cCCCeeecCCCceEEEccCChhhHHHH-HHHHHHHHHHHHHhCCCHHHhCCccCC--CcccHHHHHHHHHHHHHH Confidence 64 457899999999999999999999975 999999999999999999999976555 345555555 55667999 Q ss_pred HHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC Q lcl|Aclame:pro 302 SYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT 374 (383) Q Consensus 302 p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~ 374 (383) |++++||++|+++|++ .+++||+++++++|.+++++++++++++|++|+||+|+++|++|++++|.+....+. T Consensus 310 P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~ 389 (416) T protein:vir:12 310 PWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNY 389 (416) T ss_pred HHHHHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccc Confidence 9999999999999974 479999999999999999999999999999999999999999999999865433222 Q ss_pred C---------------CCCCCCCC Q lcl|Aclame:pro 375 N---------------ETKGGDDK 383 (383) Q Consensus 375 ~---------------~~~gGd~~ 383 (383) . ..+|||++ T Consensus 390 ~~~~~~~~~~~~~~~~~~~gge~~ 413 (416) T protein:vir:12 390 VFLDFLEEYQRLKAGGAMKGGDNK 413 (416) T ss_pred ccccccchhhccccccccCCCCCc Confidence 1 24677777 No 31 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=4e-81 Score=461.36 Aligned_cols=378 Identities=13% Similarity=0.134 Sum_probs=292.0 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec----------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN----------- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~----------- 69 (383) ||||++++.++....+.......+.............+....++++|+|++||++||++||++|++++. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~~~~~~ 80 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGGRERVR 80 (423) T ss_pred CchhHhhccccccccCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCceeeec Confidence 999999876554433222221111111111122222344566778999999999999999999999863 Q ss_pred -chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeec--Cc---ceeeeecCCceEEEEEEe--- Q lcl|Aclame:pro 70 -TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNS--DV---QINYLPGNMGIVYTVLES--- 137 (383) Q Consensus 70 -~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~--~~---~~~~~~~~~~~~~~~~~~--- 137 (383) ++...|+.+|||+||+++||+.++.+++++||||+++.++. ...+++. ++ ++....+..+...|.+.. T Consensus 81 ~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~~~~~~ 160 (423) T protein:vir:81 81 EGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYIIIESGD 160 (423) T ss_pred cchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEEEEecC Confidence 22345778999999999999999999999999999987753 2222222 22 222233333433333322 Q ss_pred cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC----CCHHHH Q lcl|Aclame:pro 138 NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL----SDGKDL 213 (383) Q Consensus 138 ~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~----~~~~~~ 213 (383) .++....+++++|||+|.++.++ ..+|+||+.+++.++....++++++.++|+||++|+++|+.+... .+++++ T Consensus 161 ~~g~~~~~~~~evih~r~~~~~~--~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~ 238 (423) T protein:vir:81 161 NDGRSVKVPGERVIHRHGYNPKT--MKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESR 238 (423) T ss_pred CCceEEEEcccceEEecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHH Confidence 35566789999999999776654 347999999999999999999999999999999999999876532 467889 Q ss_pred HHHHHHHHHHhcC--cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH Q lcl|Aclame:pro 214 ESAREEFEKANTG--DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ 291 (383) Q Consensus 214 ~~~~~~~~~~~~g--~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~ 291 (383) +++++.|++.+.+ .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||...++ ++++.|+ T Consensus 239 ~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~-e~~~~~~~eIa~~fgVPp~~lg~~~~~--t~sn~e~ 315 (423) T protein:vir:81 239 TRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTV-ETTKLSLQTVAQVYGINPTMVGQLDNA--NYSNVRE 315 (423) T ss_pred HHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHH-HHHHhhHHHHHHHhCCCHHHhcCCCCC--CcccHHH Confidence 9999999998743 5789999999999999999999999975 999999999999999999999976554 4556666 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcCCc--------eeeeechhhhccCHHHHHHHHHHHHh-CCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 292 IK-ATYLANLNSYVNPIVDELRLKMNAP--------DLELDIKDMLDVDDSILINQVSNLAK-SGVLGAEQAQFILTRSG 361 (383) Q Consensus 292 ~~-~~~~~tl~p~~~~i~~~l~~~l~~~--------~~~fd~~~ll~~d~~~~~~~~~~~~~-~G~~t~nE~R~~~g~~p 361 (383) +. .++..||.||+++||++|+++|++. +++||.++++++|.+++++++++++. +|+||+||+|+++|++| T Consensus 316 ~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p 395 (423) T protein:vir:81 316 FRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPS 395 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCC Confidence 55 5556699999999999999999742 58999999999999999999999885 69999999999999999 Q ss_pred ccCCccccccCCCCCC----CCCCCC Q lcl|Aclame:pro 362 FLPDNLPEFKPLTNET----KGGDDK 383 (383) Q Consensus 362 ~~~~d~~~~~~~~~~~----~gGd~~ 383 (383) +|+||......+..+. +.||+. T Consensus 396 ~~gGD~~~~p~n~~~~~~~~~~~~~~ 421 (423) T protein:vir:81 396 IDGGDDLARPLNTEFGDSEDAPGEEV 421 (423) T ss_pred CCCcceeecccccccCccCCCCCCCC Confidence 9999976655544332 233333 No 32 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=5.9e-81 Score=460.41 Aligned_cols=372 Identities=14% Similarity=0.137 Sum_probs=302.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---------- 70 (383) |+|++.+++++.+...... ...+.+.. ........++.+.++++++|++||++||++||+||+++++. T Consensus 1 m~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~ 78 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQ-VVPGGMRS-SSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENGGREIAF 78 (419) T ss_pred CcchhhhccCCcccccccc-cccccccc-ccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCceeccc Confidence 9999876554332222211 11111111 11112235789999999999999999999999999998642 Q ss_pred --hh-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceEE Q lcl|Aclame:pro 71 --AT-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 71 --~~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383) +. ++|+.+|||+||+++||+.++.+++++||||++++++. .+++|++|..+.+..+.++..+|.+...+ . T Consensus 79 ~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~~~---~ 155 (419) T protein:vir:57 79 DHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMPYYDIPSIG---E 155 (419) T ss_pred cchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceEEEEEcCCc---e Confidence 22 34557999999999999999999999999999998753 57899999999988888777766554333 4 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCc---CCCHHHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNY---LSDGKDLESAREEF 220 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~---~~~~~~~~~~~~~~ 220 (383) .+++++|+|+|+++.+ +++|+||+.++..++..+.++++++.++|+||++|+++|+.+.. ..++++++++++.| T Consensus 156 ~~~~~~vih~r~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~ 232 (419) T protein:vir:57 156 ILPMRMVHHIKSFSLD---GYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKW 232 (419) T ss_pred EEchhhEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHH Confidence 6899999999976544 56899999999999999999999999999999999999998643 34678899999999 Q ss_pred HHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-HHHH Q lcl|Aclame:pro 221 EKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TYLA 298 (383) Q Consensus 221 ~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~~~~ 298 (383) .+.++| .|+|+++++++|++|++++++++|+|++ |++++.+++||++|||||.+||....+ ++++.|++.. ++.. T Consensus 233 ~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--t~sn~e~~~~~f~~~ 309 (419) T protein:vir:57 233 TERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLL-QSRQYTVNEVCRLYKVPPHMIQDLQKS--TNNNIEHQGLQYVIY 309 (419) T ss_pred HHHhccccccccceecCCCceEEEcCCChhhHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--ccccHHHHHHHHHHH Confidence 999988 6889999999999999999999999975 999999999999999999999976555 3455565554 5567 Q ss_pred HHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccC Q lcl|Aclame:pro 299 NLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKP 372 (383) Q Consensus 299 tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~ 372 (383) ||.|++++|+++|+++|+.+ +++||++.++++|.+++++++++++++|+||+||+|+++|++|+|++|...... T Consensus 310 ~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~ 389 (419) T protein:vir:57 310 TMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTPL 389 (419) T ss_pred HHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecc Confidence 99999999999999999853 689999999999999999999999999999999999999999999999765544 Q ss_pred CCC---CCCCCCCC Q lcl|Aclame:pro 373 LTN---ETKGGDDK 383 (383) Q Consensus 373 ~~~---~~~gGd~~ 383 (383) +.. .+++++.. T Consensus 390 n~~~~~~~~~~~~~ 403 (419) T protein:vir:57 390 NMVDSKALTGIGKA 403 (419) T ss_pred ccccccccccccCC Confidence 332 22332211 No 33 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=5.6e-81 Score=460.54 Aligned_cols=374 Identities=17% Similarity=0.198 Sum_probs=296.5 Q ss_pred Ccccchh--ccccccccc-----cccccchhhhhhhcc--CcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc- Q lcl|Aclame:pro 1 MGLLTPK--NFSKRNAKN-----MVYPSNPAFFTTTVG--GMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT- 70 (383) Q Consensus 1 Mg~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~- 70 (383) ||+|+++ ++.+..+.+ ..++.+..+ ..+.. ......|+.+.++++++|++||++||++||++|+++|.. T Consensus 7 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~ 85 (432) T protein:vir:97 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATA-RDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMRT 85 (432) T ss_pred CchhhhhHhhcCCccccccccccccccCchhh-hhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEEec Confidence 9999985 333333221 122222111 11111 122335789999999999999999999999999998743 Q ss_pred ----------h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceEEEEEE Q lcl|Aclame:pro 71 ----------A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIVYTVLE 136 (383) Q Consensus 71 ----------~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383) + .++|+.+||++||+++||+.++.+++++||||++++++. .+++|++|..+.+..+..+..+|++. T Consensus 86 ~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~~l~p~~v~v~~~~~g~~~y~~~ 165 (432) T protein:vir:97 86 PDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRLTITTDTKGNTAYRYR 165 (432) T ss_pred CCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCcceEEEEcCCCcEEEEEE Confidence 2 345667999999999999999999999999999998754 46788888888887766666666666 Q ss_pred ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 137 SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 137 ~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) ..++..+.+++++|||+|+++.+ +++|+||+..+...+..+.+++++..++|+||++|+++++.++.+ ++++++++ T Consensus 166 ~~~g~~~~~~~~~iih~r~~~~d---g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~ 241 (432) T protein:vir:97 166 RTDGQMIDIPRQQIWKIMGYSLD---GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL-TDDQYDSF 241 (432) T ss_pred ecCceEEEEccccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCC-CHHHHHHH Confidence 66777789999999999976544 568999999999999999999999999999999999999999876 55777777 Q ss_pred HHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcccccccc-chhHHHHHHH- Q lcl|Aclame:pro 217 REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTES-QHSNIDQIKA- 294 (383) Q Consensus 217 ~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~-~~~~~e~~~~- 294 (383) ++.|. +..|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||..+.++. ++++.|++.. T Consensus 242 ~~~~~---~~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~ 317 (432) T protein:vir:97 242 SKKVS---GSVEAGRAPLLEGGMDVKSLGLNPVDAQLL-QSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLG 317 (432) T ss_pred HHHHh---hhhcCCCceecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHH Confidence 66664 236789999999999999999999999975 99999999999999999999998665443 3456666554 Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccc Q lcl|Aclame:pro 295 TYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLP 368 (383) Q Consensus 295 ~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~ 368 (383) |+..||.||++.||++|+++|+++ +++||++.++++|.+++++++.+++++|+||+||+|+++|++|+++++.. T Consensus 318 f~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~ 397 (432) T protein:vir:97 318 FLTMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAV 397 (432) T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcce Confidence 556799999999999999999853 68999999999999999999999999999999999999999999876532 Q ss_pred cc-cCCCCC----------C-CCC--CCC Q lcl|Aclame:pro 369 EF-KPLTNE----------T-KGG--DDK 383 (383) Q Consensus 369 ~~-~~~~~~----------~-~gG--d~~ 383 (383) .. .....+ . .+| ++| T Consensus 398 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~~ 426 (432) T protein:vir:97 398 LTVQSAMVPLDSIGLQASPEPASGLGNQQ 426 (432) T ss_pred EeecccccchhhhcccCCCCCCCCCCCcc Confidence 21 111111 1 111 111 No 34 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=1.3e-80 Score=458.55 Aligned_cols=369 Identities=15% Similarity=0.151 Sum_probs=299.2 Q ss_pred cccchhccccccccccccccchhhhhhhccCcc---cccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch------- Q lcl|Aclame:pro 2 GLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQ---LSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA------- 71 (383) Q Consensus 2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~------- 71 (383) =||+|++.++.. .+..+...|+..+.++.. ...||.+.|+++++|++||++||++||++|+++++.. T Consensus 1 ~~~~r~~~~~~~---~~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~ 77 (419) T protein:vir:14 1 MFFSRQLLSNLG---QTQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGEDRKPA 77 (419) T ss_pred Cccccccccccc---ccccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCccccc Confidence 233333222221 223333445554443322 3358899999999999999999999999999987532 Q ss_pred ----h-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceE Q lcl|Aclame:pro 72 ----T-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPK 142 (383) Q Consensus 72 ----~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383) . .+|+.+|||+||+++||+.++.+++++||||+++.++. .+++|++|..+.+..+.++..+|.+.... T Consensus 78 ~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~~~~--- 154 (419) T protein:vir:14 78 TDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVRGSD--- 154 (419) T ss_pred cccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEccCc--- Confidence 2 34566899999999999999999999999999998753 47899999888887777666665544332 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC---CHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS---DGKDLESAREE 219 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~---~~~~~~~~~~~ 219 (383) .++.++|+|+|+++.+ +++|.||+.++..++..+.++.+++.++|+||++|+++|+.++... ++++++++++. T Consensus 155 -~~~~~~i~h~~~~~~d---g~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~ 230 (419) T protein:vir:14 155 -PMPQRLVHHVRWMSIN---GYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDG 230 (419) T ss_pred -ccchhheeEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHH Confidence 3789999999976654 5789999999999999999999999999999999999999987554 67889999999 Q ss_pred HHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHH Q lcl|Aclame:pro 220 FEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYL 297 (383) Q Consensus 220 ~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~ 297 (383) |++.++| .|+|+++++++|++|+++++++.|+|++ |++++++++||++|||||++||..+.+ ++++.|++. .++. T Consensus 231 ~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVpp~~lg~~~~~--t~s~~E~~~~~f~~ 307 (419) T protein:vir:14 231 WNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALI-DALRLSALDIARIYKIPAHMVNELERA--TFSNIEHQSLQFVI 307 (419) T ss_pred HHHHhcCccccCCceecCCCceEEEccCChhhHHHH-HHHHHHHHHHHHHhCCCHHHhcCCCCC--CcccHHHHHHHHHH Confidence 9999998 5889999999999999999999999975 999999999999999999999976554 345556555 4556 Q ss_pred HHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccccc Q lcl|Aclame:pro 298 ANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK 371 (383) Q Consensus 298 ~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~ 371 (383) .||.||+++||++|+++|+.+ +++||+++++++|.+++++++++++++|++|+||+|+++|++|+|+||..... T Consensus 308 ~~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~ 387 (419) T protein:vir:14 308 YTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) T ss_pred HHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec Confidence 799999999999999999753 68999999999999999999999999999999999999999999999865544 Q ss_pred CCCCCC------CCCCCC Q lcl|Aclame:pro 372 PLTNET------KGGDDK 383 (383) Q Consensus 372 ~~~~~~------~gGd~~ 383 (383) .+..+. ++|+.+ T Consensus 388 ~n~~~~~~~~~~~~~~~~ 405 (419) T protein:vir:14 388 MNMVDASKPQQLPVGKSE 405 (419) T ss_pred cccccccccccccCCCCC Confidence 332221 122222 No 35 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=6e-80 Score=454.92 Aligned_cols=371 Identities=26% Similarity=0.382 Sum_probs=313.0 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCCC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESPS 80 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~PN 80 (383) ||||++.+..+ ...+..++.|...+.++.....++.+.++++++|++||++||++||++|++++++..+.|+.+|| T Consensus 1 M~~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~~~~~~~~l~~~PN 76 (397) T protein:vir:38 1 MPLLKLNKSHS----QGFSLNDPDWVNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTSESDRSQSIISNPS 76 (397) T ss_pred Ccchhhhhccc----CcccCCchhhhhhhcCCcCCceechHHhhccHHHHHHHHHHHHHHhhCcccccccHHHHHHhcCC Confidence 99998753322 33444456666666665566678999999999999999999999999999999999999999999 Q ss_pred ccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCc-eEEEEEEe---cCceEEEEchhheEE Q lcl|Aclame:pro 81 SLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMG-IVYTVLES---NDRPKMVLRQDQMLH 152 (383) Q Consensus 81 ~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~vih 152 (383) ++||+++||+.++.+++++||||++++++. ..+++++|.++.+..+.++ ..+|.+.. .++..+.+++++||| T Consensus 77 ~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eiih 156 (397) T protein:vir:38 77 VTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDEPAIGYMENVPAADVIH 156 (397) T ss_pred CCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEeccccccceeEecCccEEE Confidence 999999999999999999999999998764 4678888887776554333 33333322 244557899999999 Q ss_pred ecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCc Q lcl|Aclame:pro 153 FRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRL 232 (383) Q Consensus 153 ~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~ 232 (383) +|+++.++ .++|.||+.++..++....++.+++.++|+||++|+++++.+..+. +++.+++++.|+..+++.|+|++ T Consensus 157 ~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~-~e~~~~~~~~~~~~~~~~n~~~~ 233 (397) T protein:vir:38 157 IRLLSKNG--GKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGL-LDAETRIARSKEISKQIHNSDGP 233 (397) T ss_pred ecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCC-HHHHHHHHHHHHHHhcccccCCc Confidence 99876554 4689999999999999999999999999999999999999998765 46788999999999988899999 Q ss_pred eeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 MVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELR 312 (383) Q Consensus 233 ~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~ 312 (383) +|+++|++|+++++++.++|++ |.+++.+++||++|||||++||+...+ +++.|+...+|..||.|+++.|+++|+ T Consensus 234 ~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~afgVp~~~lg~~~~~---~~~~e~~~~~~~~~l~P~~~~ie~~ln 309 (397) T protein:vir:38 234 VVIDALEDYKPLEVKGNIASLL-NQVDWTRDQIAKVYGVPDSYLNGQGDQ---QSSITQISGQYAKSLNRYVQAIVGELN 309 (397) T ss_pred eecCCCceEEecCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999975 999999999999999999999975433 356688888999999999999999999 Q ss_pred hhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCC------CCCCCCCCCC Q lcl|Aclame:pro 313 LKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPL------TNETKGGDDK 383 (383) Q Consensus 313 ~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~------~~~~~gGd~~ 383 (383) ++|++. ++|++..+++.|.+++++++++++++|++|+||+|+++|++|++++|.+..... ..+.+|||++ T Consensus 310 ~~l~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~ 385 (397) T protein:vir:38 310 DKLHAN-ISANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGEND 385 (397) T ss_pred HhccCh-hcccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccccccccccccccccccCCCC Confidence 999875 677888888999999999999999999999999999999999999886543322 2344566554 No 36 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=4.6e-79 Score=450.08 Aligned_cols=369 Identities=15% Similarity=0.135 Sum_probs=298.3 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcc---cccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch------ Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQ---LSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA------ 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~------ 71 (383) |-|-++. .+. .. ...+....|+..+.++.. ...||.+.+|++++|++||++||++||++|+++++.. T Consensus 1 m~~~~~~-~~~--~~-~~~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~~~~ 76 (419) T protein:vir:80 1 MFFSRQL-LSN--LG-QTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) T ss_pred CCccccc-ccc--cC-cCCCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCCccc Confidence 5444322 111 11 122222344443333222 2458899999999999999999999999999986532 Q ss_pred -----h-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCce Q lcl|Aclame:pro 72 -----T-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRP 141 (383) Q Consensus 72 -----~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383) . ++|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|.++.+..+.++.++|..... T Consensus 77 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~~~--- 153 (419) T protein:vir:80 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGA--- 153 (419) T ss_pred ccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEcCc--- Confidence 2 34566999999999999999999999999999998764 4688999988888777766555544322 Q ss_pred EEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC---CCHHHHHHHHH Q lcl|Aclame:pro 142 KMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL---SDGKDLESARE 218 (383) Q Consensus 142 ~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~---~~~~~~~~~~~ 218 (383) ..+++++|+|+|+++.+ +++|+||+.++...+..+.++++++.++|+||++|+++|+.++.. .++++.+++++ T Consensus 154 -~~~~~~~i~h~~~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~ 229 (419) T protein:vir:80 154 -DPLPQRLVHHVRWMSIN---GYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITD 229 (419) T ss_pred -cccchhheEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHH Confidence 24889999999976554 568999999999999999999999999999999999999987543 36788899999 Q ss_pred HHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHH Q lcl|Aclame:pro 219 EFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATY 296 (383) Q Consensus 219 ~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~ 296 (383) .|++.++| .|+|+++++++|++|+++++++.|+|++ |.+++.+++||++|||||.+||....++ +++.|++. .++ T Consensus 230 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~-e~~~~~~~~Ia~~fgVPp~llg~~~~~t--~~n~e~~~~~f~ 306 (419) T protein:vir:80 230 GWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALI-DALRLSALDIARIYKIPAHMVNELERAT--FSNIEHQSLQFV 306 (419) T ss_pred HHHHHhcCccccCCceecCCCceEEeccCChhhHHHH-HHHHHHHHHHHHHhCCCHHHhcCCCCCC--cccHHHHHHHHH Confidence 99999988 5889999999999999999999999975 9999999999999999999999765543 44555554 556 Q ss_pred HHHHHHHHHHHHHHHHhhcCC------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccc Q lcl|Aclame:pro 297 LANLNSYVNPIVDELRLKMNA------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (383) Q Consensus 297 ~~tl~p~~~~i~~~l~~~l~~------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~ 370 (383) ..||.|++++||++|+++|+. .+++||++.++++|.+++++++++++++|++|+||+|+++|++|+++||.... T Consensus 307 ~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~ 386 (419) T protein:vir:80 307 IYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLS 386 (419) T ss_pred HHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Confidence 679999999999999999975 36899999999999999999999999999999999999999999999997654 Q ss_pred cCCC------CCCCCCCCC Q lcl|Aclame:pro 371 KPLT------NETKGGDDK 383 (383) Q Consensus 371 ~~~~------~~~~gGd~~ 383 (383) ..+. .+.++|+.+ T Consensus 387 ~~n~~~~~~~~~~~~~~~~ 405 (419) T protein:vir:80 387 PMNMVDASKPQPIPMGKTE 405 (419) T ss_pred ccccccccccccccCCCCC Confidence 4322 233455444 No 37 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=2.7e-78 Score=445.82 Aligned_cols=363 Identities=20% Similarity=0.266 Sum_probs=287.8 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc--------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT--------AT 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~--------~~ 72 (383) ||||+++.. ...+...++..+.++.....++...|+++++|++||++||++||++|+++++. +. T Consensus 1 m~~f~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~~~~~~~~ 72 (406) T protein:vir:97 1 MSFFQPLGT--------SKVSYDDYISSVLAGDVSQKYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGDIIHDEDI 72 (406) T ss_pred CccccccCC--------CCCCcchHHHHHhcCCCCcccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCccccccchH Confidence 999975311 11122233444444444445666789999999999999999999999998753 33 Q ss_pred h-hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc-----ceEEeecCcceeeeecCCce-EEEEEEecCceEEEE Q lcl|Aclame:pro 73 L-NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-----LEHIPNSDVQINYLPGNMGI-VYTVLESNDRPKMVL 145 (383) Q Consensus 73 ~-~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (383) . +|+.+|||+||+++||+.++.+|+++||||+++.++. .+++|++|..+.+...+.+. .|.+....++..+.+ T Consensus 73 ~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~~~~~~ 152 (406) T protein:vir:97 73 NYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTAKQVKC 152 (406) T ss_pred HHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCceEEEE Confidence 3 4456899999999999999999999999999998752 47888888888776655554 444445567778899 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|+++.+ ++.|+||+.++..++..+.+++++..++|+||++|+++++.+.. .++++++++++.|++.++ T Consensus 153 ~~~evih~r~~~~d---g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~ 228 (406) T protein:vir:97 153 FAHDVIHWKFFSHD---TILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQ-LSGDARQRARQEFEKMRE 228 (406) T ss_pred ccccEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCC-CCHHHHHHHHHHHHHHhc Confidence 99999999976544 56799999999999999999999999999999998877665554 567889999999999999 Q ss_pred CcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 226 GDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVN 305 (383) Q Consensus 226 g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~ 305 (383) |.|+|+++|+++|++|+++++++.|+|++ |++++++++||++|||||++||... .+.+..++...++..||.||++ T Consensus 229 g~n~g~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~afgVPp~~lg~~~---~~~~~e~~~~~f~~~~l~P~~~ 304 (406) T protein:vir:97 229 GSVGGSPLVFDSTMEYTPLEIDTNVLQLI-TSNNFSTAQIAKALRVPSYKLGVNS---PNQSVAQLMEDYVTNDLPFYFD 304 (406) T ss_pred ccccCceeecCCCceEEEccCCHHHHHHH-HHHHhhHHHHHHHhCCCHHHcCCCC---CcchHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999986 9999999999999999999998522 1223334555566789999999 Q ss_pred HHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC--CccccccCCCC-- Q lcl|Aclame:pro 306 PIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP--DNLPEFKPLTN-- 375 (383) Q Consensus 306 ~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~--~d~~~~~~~~~-- 375 (383) +||++|+++|+++ +++||+++ +.+.+++.+.+++++|+||+||+|+++|++|+++ +|......+.. T Consensus 305 ~ie~~l~~kll~~~~~~~~~i~fd~~~----~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~ 380 (406) T protein:vir:97 305 AITSELGLKTLNDKDRRLYHIEFDTRS----VTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFL 380 (406) T ss_pred HHHHHHhhhhcChhhccceeEEEecCc----cchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccch Confidence 9999999999864 47888655 5566677888999999999999999999999977 44333222221 Q ss_pred ------------CCCCCCCC Q lcl|Aclame:pro 376 ------------ETKGGDDK 383 (383) Q Consensus 376 ------------~~~gGd~~ 383 (383) ..+|||+. T Consensus 381 ~~~~~~~~~~~~~~~gg~~~ 400 (406) T protein:vir:97 381 DKKEEYQDKVGIKGKGGEVN 400 (406) T ss_pred hcccccccccccccCCCCCC Confidence 23566543 No 38 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=2.1e-78 Score=446.45 Aligned_cols=364 Identities=20% Similarity=0.287 Sum_probs=284.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--------- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--------- 71 (383) |+||.++....... -.....++ +...+. ...++...|+++++||+||++||++||++|+++++.. T Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~---~~~~~~--~g~~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~~~~~~ 74 (417) T protein:vir:38 1 MKLFRGLATEVDPH-WADHLLDS---GVIPSF--RGGYLGISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDEVIDLAN 74 (417) T ss_pred CccccccccCCCcc-chhhhccc---cccccc--CCceechhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcceeccch Confidence 99985432111100 00000011 111111 1123345799999999999999999999999987542 Q ss_pred -hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc-----ceEEeecCcceeeeecCC-ceEEEEEEecCceEEE Q lcl|Aclame:pro 72 -TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-----LEHIPNSDVQINYLPGNM-GIVYTVLESNDRPKMV 144 (383) Q Consensus 72 -~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 144 (383) ..+|+.+|||+||+++||+.++.+++++||+|++++++. ..+++++|.++.+..... ...|++...+++.... T Consensus 75 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~~~~~ 154 (417) T protein:vir:38 75 IEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSSMQKV 154 (417) T ss_pred HHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCcEEEE Confidence 245667899999999999999999999999999998753 346677777776655444 4455555566777788 Q ss_pred EchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 145 LRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKAN 224 (383) Q Consensus 145 ~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (383) +++++|||||+++.+ +++|+||+.++..++.++.++.+++.++|+||++|+++++.++.+ ++++.+++++.|++.+ T Consensus 155 ~~~~dviH~r~~~~d---~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l-~~e~~~~~~~~~~~~~ 230 (417) T protein:vir:38 155 CGFEDVIHWKFFSYD---TIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRL-SAEARQKIREDFERAQ 230 (417) T ss_pred ecCcceEEecCCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCC-CHHHHHHHHHHHHHHh Confidence 999999999976544 568999999999999999999999999999999999999988876 5688899999999999 Q ss_pred cCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 225 TGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLNSY 303 (383) Q Consensus 225 ~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~p~ 303 (383) +|.|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||. ..++++.|++. .++..||.|| T Consensus 231 ~g~n~g~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~~fgVPp~~lg~----~~~~s~~e~~~~~~~~~tl~P~ 305 (417) T protein:vir:38 231 AGADAGSPIIVDATMDYQPLEVDTNVLNLI-NSNNYSTAQIAKALRVPAYRLAQ----NSPNQSVKQLADDYIRNDLPFY 305 (417) T ss_pred cccccCCceeccCCceEEEccCCHHHHHHH-HHHHhhHHHHHHHhCCCHHHhCC----CCcchhHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999975 99999999999999999999983 22344445444 5556799999 Q ss_pred HHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC-- Q lcl|Aclame:pro 304 VNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN-- 375 (383) Q Consensus 304 ~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~-- 375 (383) +++||++|+++|+++ +++||.+.+.+.+. +.+++++++|++|+||+|+++|++|+++++.+....+.+ T Consensus 306 ~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~~~~----~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~ 381 (417) T protein:vir:38 306 FEPITSEFELKLLDDAQRHQYCIGFDTKSVNGLPI----ADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTV 381 (417) T ss_pred HHHHHHHHHhhhcChhhcccceEEechhhhhHHHH----HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeeccccc Confidence 999999999999864 58899888754433 346788999999999999999999999987655443332 Q ss_pred --------------CCCCCCCC Q lcl|Aclame:pro 376 --------------ETKGGDDK 383 (383) Q Consensus 376 --------------~~~gGd~~ 383 (383) .+||||+- T Consensus 382 ~~d~~~~~~~~~~~~~kgg~~~ 403 (417) T protein:vir:38 382 FLDQKEAYQAEHAAELKGGDTN 403 (417) T ss_pred ccccccccccccccccCCCCCC Confidence 34666644 No 39 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=5.8e-78 Score=444.01 Aligned_cols=375 Identities=17% Similarity=0.235 Sum_probs=290.5 Q ss_pred Ccccchhccccccccc-ccccc-chhhhhhhccCcccc---cccHHHHhhhHHHHHHHHHHHHhhccceeEeecc----- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN-MVYPS-NPAFFTTTVGGMQLS---YVSALSALQNTNVYSVINRIASDVSSAHFKTENT----- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~----- 70 (383) |=+-+.. ....+.. ...+. ...++..+..+.+.+ .+....++++|+|++||++||++||++||+++.. T Consensus 1 ~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~ 78 (518) T protein:vir:78 1 MLLANGQ--TLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTE 78 (518) T ss_pred CcccCce--eeccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCcc Confidence 4222211 0011100 00010 111112222222211 2344678899999999999999999999999753 Q ss_pred ------hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC-ceEEEEEEe-c Q lcl|Aclame:pro 71 ------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM-GIVYTVLES-N 138 (383) Q Consensus 71 ------~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 138 (383) ....|+.+||++||+++||+.++.+++++||+|+++.++. .+++|++|..+.+..+.. +..+|++.. . T Consensus 79 ~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~~~~~~ 158 (518) T protein:vir:78 79 TEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQAGA 158 (518) T ss_pred ccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEecC Confidence 3456899999999999999999999999999999998854 467888888887765543 333333332 2 Q ss_pred --CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 139 --DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 139 --~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) +...+.|++++|||+|+++.++. .+|+||+.++...+..+.++++++.++|+||++|+++|+.++.+ ++++++++ T Consensus 159 ~~~~~~~~~~~~eIiHir~~~~dg~--~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~l-s~e~~~~~ 235 (518) T protein:vir:78 159 GVGTQLVSFADDEVVPIRFFNPDGL--ERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL-SPEAQQRL 235 (518) T ss_pred CccceeEEecCCcEEEecCCCCCcc--cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC-CHHHHHHH Confidence 33557899999999998776643 47999999999999999999999999999999999999998876 56788999 Q ss_pred HHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-H Q lcl|Aclame:pro 217 REEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-A 294 (383) Q Consensus 217 ~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~ 294 (383) ++.|++.++| .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||....+ ++++.|++. . T Consensus 236 k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~l-e~r~~~~~eIa~afgVPp~~lg~~~~s--t~sn~e~~~~~ 312 (518) T protein:vir:78 236 REQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFI-EARQLNREEVCGVYDIAPPIVHILDRA--TFSNISAQMRA 312 (518) T ss_pred HHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhccCCCC--CchhHHHHHHH Confidence 9999999988 6899999999999999999999999975 999999999999999999999976654 455556555 4 Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCcc--CCcc Q lcl|Aclame:pro 295 TYLANLNSYVNPIVDELRLKMNA-----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL--PDNL 367 (383) Q Consensus 295 ~~~~tl~p~~~~i~~~l~~~l~~-----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~--~~d~ 367 (383) ++..||.||+++|+++++++|+. .+++||++.++++|.+++++++++++++|++|+||+|+++|++|++ ++|. T Consensus 313 f~~~tL~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD~ 392 (518) T protein:vir:78 313 FYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADE 392 (518) T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCce Confidence 55679999999999999999974 3799999999999999999999999999999999999999999997 5554 Q ss_pred ccccCCCCCC--------CCCCCC Q lcl|Aclame:pro 368 PEFKPLTNET--------KGGDDK 383 (383) Q Consensus 368 ~~~~~~~~~~--------~gGd~~ 383 (383) .....+..++ +|++.. T Consensus 393 ~~v~~n~~pl~~~~~~~~~g~~~~ 416 (518) T protein:vir:78 393 LYANSALQPLGATPDGAVEGEEAP 416 (518) T ss_pred eeecccceecccccccccCCCCCC Confidence 4333322221 111111 No 40 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=1.4e-77 Score=441.93 Aligned_cols=372 Identities=17% Similarity=0.235 Sum_probs=289.7 Q ss_pred Ccccchhccccccccccc----ccc-chhhhhhhccCccc---ccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc-- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMV----YPS-NPAFFTTTVGGMQL---SYVSALSALQNTNVYSVINRIASDVSSAHFKTENT-- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~-- 70 (383) |=+-+. +...+.+ .+. ...+...+..+.+. ..+....++++++|++||++||++||++|+++++. T Consensus 1 ~~~~~~-----~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~ 75 (518) T protein:vir:10 1 MLLANG-----QTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSG 75 (518) T ss_pred CcccCc-----eeecCchhhhhhhhhhcccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcC Confidence 432221 1111111 000 01111111122221 12334568899999999999999999999998653 Q ss_pred ---------hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC-ceEEEEEE Q lcl|Aclame:pro 71 ---------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM-GIVYTVLE 136 (383) Q Consensus 71 ---------~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (383) ....|+.+||++||+++||+.++.+++++||||+++.++. .+++|+++..+.+..+.. +..+|++. T Consensus 76 ~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y~~~ 155 (518) T protein:vir:10 76 DTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQ 155 (518) T ss_pred CCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEEEEEE Confidence 3567899999999999999999999999999999998754 467888888887765543 33333333 Q ss_pred e-c--CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 137 S-N--DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 137 ~-~--~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) . . +...+.|++++|||+|+++.++. .+|+||+.++..++....++++++.++|+||++|+++++.++.+ +++++ T Consensus 156 ~~~~~~~~~~~~~~~eViHir~~s~dg~--~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l-s~e~~ 232 (518) T protein:vir:10 156 AGAGVGTQLVSFADDEVVPIRFFNPDGL--ERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL-SEAAQ 232 (518) T ss_pred ecCCccceEEEecCCcEEEecCCCCCcc--cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC-CHHHH Confidence 2 2 33557899999999998776643 47999999999999999999999999999999999999999876 45788 Q ss_pred HHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH Q lcl|Aclame:pro 214 ESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI 292 (383) Q Consensus 214 ~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~ 292 (383) +++++.|++.++| .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||..+.+ ++++.|++ T Consensus 233 ~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~l-e~r~~~~~eIa~afgVPp~~lg~~~~~--t~sn~eq~ 309 (518) T protein:vir:10 233 QRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFI-EARQLNREEVCGVYDIAPPIVHILDRA--TFSNISAQ 309 (518) T ss_pred HHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhccCCCC--CchhHHHH Confidence 9999999999988 6899999999999999999999999975 999999999999999999999976655 45555655 Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhcCC-----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCcc--C Q lcl|Aclame:pro 293 K-ATYLANLNSYVNPIVDELRLKMNA-----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL--P 364 (383) Q Consensus 293 ~-~~~~~tl~p~~~~i~~~l~~~l~~-----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~--~ 364 (383) . .++..||.||++.||++|+++|+. .+++||++.++++|.+++++++++++++|++|+||+|+++|++|++ + T Consensus 310 ~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~ 389 (518) T protein:vir:10 310 MRAFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPK 389 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 5 455679999999999999999974 4799999999999999999999999999999999999999999996 5 Q ss_pred CccccccCCCCCC--------CCCCCC Q lcl|Aclame:pro 365 DNLPEFKPLTNET--------KGGDDK 383 (383) Q Consensus 365 ~d~~~~~~~~~~~--------~gGd~~ 383 (383) +|......+..++ +|++.. T Consensus 390 gD~~~~~~n~~pl~~~~~~~~~g~~~~ 416 (518) T protein:vir:10 390 ADELYANSALQPLGATPDGAVEGEEAP 416 (518) T ss_pred CCeeeecccceecccccccccCCCCCC Confidence 6654333222221 111111 No 41 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=7.4e-78 Score=443.44 Aligned_cols=360 Identities=14% Similarity=0.082 Sum_probs=289.4 Q ss_pred Ccccchhcccc-------------------------ccccccccccc-----hhhh---hhhccCcccccccHHHHhhhH Q lcl|Aclame:pro 1 MGLLTPKNFSK-------------------------RNAKNMVYPSN-----PAFF---TTTVGGMQLSYVSALSALQNT 47 (383) Q Consensus 1 Mg~~~~~~~~~-------------------------~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~ 47 (383) ||||+++|... +.......... ..+. ..|.. .....++.+.+++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~t~~~~~~~~ 79 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWAT-PSWGSAQDKLRTLID 79 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccc-cCccccchhhHhhhH Confidence 99999998831 11111100000 0111 11111 123347889999999 Q ss_pred HHHHHHHHHHHhhccceeEeecch------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEE-ec----cceEEee Q lcl|Aclame:pro 48 NVYSVINRIASDVSSAHFKTENTA------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV-GQ----NLEHIPN 116 (383) Q Consensus 48 ~v~~~i~~ia~~ia~~~~~v~~~~------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~-~~----~~~~~~~ 116 (383) +|++||++||++||+||+++++.. ...|+.+||++||+++|++.++.+|++ ||+|++++ ++ ..+++|+ T Consensus 80 ~v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~L~pl 158 (409) T protein:vir:83 80 VAWACIDLNASVLSSMPIYRMRNGRIIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIRFRVV 158 (409) T ss_pred HHHHHHHHHHHhhccCceEEeeCCccccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEEEEEE Confidence 999999999999999999998643 446778999999999999999999987 99999754 32 3578888 Q ss_pred cCcceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 117 SDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) +|..+.+..+.++..+|++.. ...+++|||+|+++..+ +.+|+||+++++..+.++.++++++.++|+||++ T Consensus 159 ~p~~v~v~~~~~g~~~y~~~~------~~~~~eiiHir~~~~~~--~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~ 230 (409) T protein:vir:83 159 PPWLVNVELKKGARREYRIGG------LNVTDEILHIRYQGNTA--DAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGV 230 (409) T ss_pred CCcceEEEEcCCceEEEEEcc------ccCccceEEeCCCCCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 888888777777665554432 23468999999765433 4689999999999999999999999999999999 Q ss_pred cceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCcee-EecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 197 PAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDY-TQLEMKTDVFKALADNSAYSADQISKAFGVPSDI 275 (383) Q Consensus 197 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~-~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~ 275 (383) |+++++.++.+ ++++++++++.|+..+.+ |+|+++++.+|+++ ++++++++|+|++ |++++++++||++|||||++ T Consensus 231 p~gil~~~~~l-s~e~~~~~~~~~~~~~~~-nag~~~il~~g~~~~~~~~~s~~d~q~l-e~r~~~~~eIa~~fgVPp~l 307 (409) T protein:vir:83 231 PLYWLGVERRL-SETEAVDLMDRWIESRSK-YAGHPALVTGGATLNQAKSMSAQDLSLM-ELTQFNEARIAILLGVPPFL 307 (409) T ss_pred cceEeecCCCC-CHHHHHHHHHHHHHhhCC-ccCccceecCCcccccccCCCHHHHHHH-HHHHhhHHHHHHHhCCCHHH Confidence 99999998876 568889999999988765 78999999999997 5799999999975 99999999999999999999 Q ss_pred hccccc-cccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcC--CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 276 LGGGTS-TESQHSNIDQIKATY-LANLNSYVNPIVDELRLKMN--APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAE 351 (383) Q Consensus 276 lg~~~~-~~~~~~~~e~~~~~~-~~tl~p~~~~i~~~l~~~l~--~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~n 351 (383) ||.... ++.++++.||+...| ..||.||+++||++|+++|+ +++++||++.++++|.++|++++++++++|+||+| T Consensus 308 lg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~N 387 (409) T protein:vir:83 308 VGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPSPQHLELNRDDYTRPSLVERATAYKIMIEAGVMEPN 387 (409) T ss_pred ccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEeehhhhhccCHHHHHHHHHHHHhCCCcCHH Confidence 997544 344567777777655 56999999999999999997 45899999999999999999999999999999999 Q ss_pred HHHHHhCCCCccCCccccccCCCCCCCCCCC Q lcl|Aclame:pro 352 QAQFILTRSGFLPDNLPEFKPLTNETKGGDD 382 (383) Q Consensus 352 E~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~ 382 (383) |+|+++|++|++++|.. ++||= T Consensus 388 E~R~~~glpp~~ggd~l---------~~~gv 409 (409) T protein:vir:83 388 EARAMERLHSEAAAVRL---------SGGGV 409 (409) T ss_pred HHHHHhCCCCCCCCccc---------CCCCC Confidence 99999999999888743 12222 No 42 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=3e-77 Score=440.13 Aligned_cols=369 Identities=16% Similarity=0.181 Sum_probs=290.6 Q ss_pred Ccccchhcccc---ccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch------ Q lcl|Aclame:pro 1 MGLLTPKNFSK---RNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA------ 71 (383) Q Consensus 1 Mg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~------ 71 (383) |+++.|+...- -..++.....+ +..|.+ .....++.+.++++++|++||++||++||++|+++++.. T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~~~~~~ 79 (409) T protein:vir:96 4 ENIVTRIKKKLIDNWIDQSASKLYD---FSPWKN-KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTE 79 (409) T ss_pred ccchhhhhhHHhhhhhccccccccc---cccccC-ccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeecccccchh Confidence 77887753331 11111111111 222222 233457888999999999999999999999999986532 Q ss_pred -hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEecCceEEEE Q lcl|Aclame:pro 72 -TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESNDRPKMVL 145 (383) Q Consensus 72 -~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 145 (383) .++|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|..+.+..++ .+..+|.+...++..+.+ T Consensus 80 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~ 159 (409) T protein:vir:96 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIV 159 (409) T ss_pred HHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEE Confidence 345667999999999999999999999999999998753 57788888777765544 344555666666777899 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|+++. .++++|.||+.++...+.++.++.++. ++.++..++++++.+.. .++++++++++.|++.++ T Consensus 160 ~~~evih~r~~~~--~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~-l~~e~~~~~~~~~~~~~~ 234 (409) T protein:vir:96 160 HNMDMLHFKHIVA--SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN-VSTEKRQQVLEDFKQYYE 234 (409) T ss_pred ccccEEEeCCCCC--CCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCC-CCHHHHHHHHHHHHHHhh Confidence 9999999997543 346789999999999999999988874 34444444556555554 466889999999998874 Q ss_pred CcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 226 GDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLNSYV 304 (383) Q Consensus 226 g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~ 304 (383) ++|+++++++|++|+++++++.|+|++ |++++++++||++|||||++||....+ ++++.|++. .++..||.|++ T Consensus 235 --n~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--~~s~~e~~~~~f~~~~l~P~~ 309 (409) T protein:vir:96 235 --ENGGILFQEPGVEIEPLPKKYVSEDIV-ASENLTRERVANVFQLPSIFLNARSNT--NFAKNEELNRFYLQHTLLPIV 309 (409) T ss_pred --cCCCeeecCCCceEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--CcccHHHHHHHHHHHHHHHHH Confidence 578999999999999999999999975 999999999999999999999975544 455556655 45567999999 Q ss_pred HHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC-- Q lcl|Aclame:pro 305 NPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN-- 375 (383) Q Consensus 305 ~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~-- 375 (383) ++|+++|+++|++ .+++||+++++++|.+++++++++++++|++|+||+|+++|++|+|++|......+.. T Consensus 310 ~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~~ 389 (409) T protein:vir:96 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI 389 (409) T ss_pred HHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeeeccccccc Confidence 9999999999974 4699999999999999999999999999999999999999999999999766544432 Q ss_pred --------CCCCCCCC Q lcl|Aclame:pro 376 --------ETKGGDDK 383 (383) Q Consensus 376 --------~~~gGd~~ 383 (383) ..+|||+- T Consensus 390 ~~~~~~~~~~~gG~~n 405 (409) T protein:vir:96 390 DTPLELRKSLKGGDKN 405 (409) T ss_pred ccchhhcccccCCCCC Confidence 24677554 No 43 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=6.9e-77 Score=438.11 Aligned_cols=372 Identities=16% Similarity=0.189 Sum_probs=290.0 Q ss_pred Ccccch--hcccccccc-c-c--ccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MGLLTP--KNFSKRNAK-N-M--VYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg~~~~--~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) |+||.+ ++.+.+++. . . ...+....+..+.+ .....++...++++|+|++||++||++||++|+++++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 79 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKN-RSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV 79 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccccccccCC-ccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeeccccc Confidence 999965 333212110 0 0 00011111222222 23334788999999999999999999999999998643 Q ss_pred --h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEecCceE Q lcl|Aclame:pro 71 --A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESNDRPK 142 (383) Q Consensus 71 --~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 142 (383) + .++|+.+||++||+++||+.++.+++++||||+++.++. .+++++++..+.+..+. .+.++|.+...++.. T Consensus 80 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~ 159 (412) T protein:vir:26 80 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNK 159 (412) T ss_pred cchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceE Confidence 2 344667899999999999999999999999999998753 46777777766655433 345555566666677 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) +.|++++|||+|+++.. .+++|+||+.++...+.++.++.++. ++.++..++++++.+..+ ++++++++++.|++ T Consensus 160 ~~~~~~evih~~~~~~~--~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~~~~l-~~e~~~~~~~~~~~ 234 (412) T protein:vir:26 160 LIVHNMDMLHFKHIVAS--NMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNV-GKEKRQQVLEDFKQ 234 (412) T ss_pred EEEccccEEEeCCCCCC--CCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCC-CHHHHHHHHHHHHH Confidence 88999999999976433 36789999999999999999998884 455555566666666554 66888999999998 Q ss_pred HhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHH Q lcl|Aclame:pro 223 ANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLN 301 (383) Q Consensus 223 ~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~ 301 (383) .+. ++|+++++++|++|+++++++.|+|++ |++++++++||++|||||++||....+ ++++.|++. .++..||. T Consensus 235 ~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~afgVPp~~lg~~~~~--~~sn~e~~~~~f~~~~l~ 309 (412) T protein:vir:26 235 YYE--ENGGILFQEPGVEIEPLPKKYVSEDIV-ASENLTRERVANVFQLPSVFLNARSNT--NFAKNEELNRFYLQHTLL 309 (412) T ss_pred Hhh--cCCCeeecCCCceEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--CcccHHHHHHHHHHHHHH Confidence 774 578899999999999999999999975 999999999999999999999975444 555666665 45567999 Q ss_pred HHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC Q lcl|Aclame:pro 302 SYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT 374 (383) Q Consensus 302 p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~ 374 (383) |++++|+++|+++|++ .+++||++++++.|.+++++++++++++|++|+||+|+++|++|+|++|......+. T Consensus 310 P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~ 389 (412) T protein:vir:26 310 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 389 (412) T ss_pred HHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccc Confidence 9999999999999974 369999999999999999999999999999999999999999999999876654433 Q ss_pred C----------CCCCCCCC Q lcl|Aclame:pro 375 N----------ETKGGDDK 383 (383) Q Consensus 375 ~----------~~~gGd~~ 383 (383) . ..+|||+- T Consensus 390 ~~~~~~~~~~~~~~gG~~n 408 (412) T protein:vir:26 390 YPIDTPLELRKSLKGGDKN 408 (412) T ss_pred cccccchhhcccccCCCCC Confidence 2 34666544 No 44 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=1.5e-76 Score=436.32 Aligned_cols=372 Identities=23% Similarity=0.369 Sum_probs=303.4 Q ss_pred Ccccchhcccccccccccc-----ccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVY-----PSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNR 75 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l 75 (383) ||||+.+++.+....+... ......+..+..+.....++.+.++++++|++||++||++||++|++++++....| T Consensus 3 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~~~l 82 (392) T protein:vir:74 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) T ss_pred chhhhhhhcccCcccccccccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchhhhh Confidence 9999876554433222111 11112233333444555689999999999999999999999999999999999999 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEec---CceEEEEch Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESN---DRPKMVLRQ 147 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 147 (383) +.+||++||+++|++.++.+++++||||+++.++. .+++|++|.++.+..+. ++..+|.+... ....+.+++ T Consensus 83 ~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 162 (392) T protein:vir:74 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) T ss_pred hhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCCccceeEEEcC Confidence 99999999999999999999999999999998764 46788888877766543 33444444333 234578999 Q ss_pred hheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 148 DQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG- 226 (383) Q Consensus 148 ~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 226 (383) ++|||+|+++.++ .++|+||+.++...+..+.++++++.++|+||++|+++++.++...++++ .++.|.+.+.+ T Consensus 163 ~evih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~---~~~~~~~~~~~~ 237 (392) T protein:vir:74 163 SDLIHMKLLSIDG--GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK---DKASRSRSFMKR 237 (392) T ss_pred ccEEEecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHH---HHHHHHHHHhcc Confidence 9999999876554 36899999999999999999999999999999999999999876544322 23344444444 Q ss_pred cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 227 DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNP 306 (383) Q Consensus 227 ~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~ 306 (383) .|+|+++|+++|++|++++++++|+|++ |++++.+++||++|||||++||... .++++.++..+++..+|.|+++. T Consensus 238 ~n~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~---~~~~~~e~~~~~~~~~l~p~~~~ 313 (392) T protein:vir:74 238 SRSGGPVVLDDLEEFTALEIKSNVAQLL-SQTDWTSKQYAKVYGLPDSYIGGQG---DQQSSIQQISGMYASALNRYLRP 313 (392) T ss_pred ccCCCeeecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCC---CcccHHHHHHHHHHHHHHHHHHH Confidence 6889999999999999999999999975 9999999999999999999998643 23455677788888899999999 Q ss_pred HHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 307 IVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 307 i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) |+++++++|+. +++||...+++.|.+++++.+++++++|++|+||+|+++...++.+ |..+...+.++++|||+. T Consensus 314 ie~~l~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~p-ne~r~~enl~~~~~Gd~~ 388 (392) T protein:vir:74 314 AISELEYKLSD-HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP-KDLPAPENTNKKTTGQSN 388 (392) T ss_pred HHHHHHHhccc-hhcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCc-cccchhcCCCCCCCCCCC Confidence 99999999875 4899999999999999999999999999999999999998888876 444556678899999888 No 45 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=3.2e-76 Score=434.44 Aligned_cols=379 Identities=17% Similarity=0.143 Sum_probs=292.3 Q ss_pred Ccccchhcccccccc-cc----cc---------------ccchhhhhhhccCc------ccccccHHHHhhhHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK-NM----VY---------------PSNPAFFTTTVGGM------QLSYVSALSALQNTNVYSVIN 54 (383) Q Consensus 1 Mg~~~~~~~~~~~~~-~~----~~---------------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~i~ 54 (383) ||||+|++....... .. .. .+.+.....+.++. ....++.+.++++++|++||+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 999999977654331 10 00 01111111111111 122378899999999999999 Q ss_pred HHHHhhccceeEeec-----------chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc------------c Q lcl|Aclame:pro 55 RIASDVSSAHFKTEN-----------TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN------------L 111 (383) Q Consensus 55 ~ia~~ia~~~~~v~~-----------~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~------------~ 111 (383) +||++||++|+++++ ++...|+.+||++||+++||+.++.+++++||||+++.++. . T Consensus 81 ~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g~~~ 160 (466) T protein:vir:81 81 VRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVDVVV 160 (466) T ss_pred HHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCccee Confidence 999999999999874 34567899999999999999999999999999999998753 4 Q ss_pred eEEeecCcceeeeecCCceE--EEEEEec----CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 112 EHIPNSDVQINYLPGNMGIV--YTVLESN----DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASK 185 (383) Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~ 185 (383) .++|++|..+.+..+.++.. .|.+... +...+.+++++|||||++.+ ..++++|.||+.++..++.++.++++ T Consensus 161 ~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~-~~d~~~G~s~i~~~~~~i~~~~a~~~ 239 (466) T protein:vir:81 161 EERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPD-PLASYRGMSWLTPILREIRADQAMSK 239 (466) T ss_pred EEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCC-cccccccccHHHHHHHHHHHHHHHHH Confidence 67788887777766555432 2222222 23457899999999997543 23467999999999999999999999 Q ss_pred HHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 186 SNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQ 264 (383) Q Consensus 186 ~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~ 264 (383) +..++|+||++|+++++.++.+ ++++++++++.|++.++| .|+|+++|+++|++|++++++++|+|++ |++++++++ T Consensus 240 ~~~~~f~ng~~p~gil~~~~~l-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~ 317 (466) T protein:vir:81 240 HQAKFFDNGATVNLVIKHNPMA-DPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFK-NVRGGGETR 317 (466) T ss_pred HHHHHHhcCCCcceEEecCCCC-CHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHH-HHHHHHHHH Confidence 9999999999999999988776 568999999999999988 6889999999999999999999999975 999999999 Q ss_pred HHHHhcCCHHHhccccc-cccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCc------eeeeechhhhccCHHHHH Q lcl|Aclame:pro 265 ISKAFGVPSDILGGGTS-TESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILI 336 (383) Q Consensus 265 Ia~~fgVp~~~lg~~~~-~~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~ 336 (383) ||++|||||++||...+ +..++++.||+.. |+..||.||+++||++|+++|+.. +++||.++++++|.++++ T Consensus 318 Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~ 397 (466) T protein:vir:81 318 IAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAA 397 (466) T ss_pred HHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHHHH Confidence 99999999999998654 3456677776664 556799999999999999999753 689999999999999987 Q ss_pred HH-------HHHHHhCCCcCHHHHHHHhCCCC---ccCCc-----------cccccCCCCCCCCCCCC Q lcl|Aclame:pro 337 NQ-------VSNLAKSGVLGAEQAQFILTRSG---FLPDN-----------LPEFKPLTNETKGGDDK 383 (383) Q Consensus 337 ~~-------~~~~~~~G~~t~nE~R~~~g~~p---~~~~d-----------~~~~~~~~~~~~gGd~~ 383 (383) ++ +..++++|+ |+||+|+.++-.. +++.+ ......+....+|||+- T Consensus 398 ~~~~~~~~~~~~~~~~g~-t~nE~r~~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~n 464 (466) T protein:vir:81 398 DIQKVRAETINTLITAGY-EPESVVAAVNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPTSGGADDN 464 (466) T ss_pred HHHHHHHHHHHHHHHcCC-ChhhccccccCCccccccCCCcchhhhcccccccccCCCCcccCCCCcC Confidence 65 667889995 9999997653211 11111 11112222233566555 No 46 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=2.1e-76 Score=435.43 Aligned_cols=350 Identities=29% Similarity=0.518 Sum_probs=285.0 Q ss_pred Ccccchhccccccccccccccchhhhhhhc---cCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTV---GGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLE 77 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~ 77 (383) ||||+++.+ + . ..++. .++..+. +......|+.+.|+++++|++||++||++||++|+. .++..+.|+. T Consensus 1 M~~~~~f~~-r-~---~~~~~--~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~-~~~~~~~L~~ 72 (359) T protein:vir:10 1 MSILNPFER-R-S---SITPN--NYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI-GNQVFTSVLN 72 (359) T ss_pred Ccccchhhc-c-c---cCCCC--cchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc-cchHHHHHhh Confidence 999997532 2 1 11111 1222111 122234588999999999999999999999999984 5677889999 Q ss_pred CCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEe Q lcl|Aclame:pro 78 SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHF 153 (383) Q Consensus 78 ~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~ 153 (383) +|||+||+++||+.++.+++++||||++++++. ..++|+++..+.+..++++..|.+....++..+++++++|||| T Consensus 73 ~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~~~~~evih~ 152 (359) T protein:vir:10 73 NPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYPSAKYNASEMIHV 152 (359) T ss_pred cccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCceEEEEcccceEEe Confidence 999999999999999999999999999998754 4677888877777777777777766667777889999999999 Q ss_pred cccCcc--ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCC Q lcl|Aclame:pro 154 RLMPDP--QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGR 231 (383) Q Consensus 154 r~~~~~--~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~ 231 (383) |.++.+ ..++++|+||++++..++..+.+++++..++|+||++|+++++.++...++++++++++.|++.++|.|+|+ T Consensus 153 ~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~n~g~ 232 (359) T protein:vir:10 153 KIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANGGNNSGR 232 (359) T ss_pred ccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCC Confidence 976532 346789999999999999999999999999999999999999998766788999999999999998899999 Q ss_pred ceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 LMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDEL 311 (383) Q Consensus 232 ~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l 311 (383) ++|+++|++|+++++++.|+|++ |++++++++||++|||||++||...+++.++++.++ ++..+|.|.+..+++++ T Consensus 233 ~~vl~~g~~~~~l~~~~~d~q~l-e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~---~~~~~l~~~l~p~~~~l 308 (359) T protein:vir:10 233 VMVLDQSADFSTVSINADVANYL-NSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKD---LYVNALNRFIEPLISEL 308 (359) T ss_pred ceecCCCcceeeecCCHHHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHH---HHHHHHHHHHHHHHHHH Confidence 99999999999999999999975 999999999999999999999876555445544444 44444555555555555 Q ss_pred HhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCcc Q lcl|Aclame:pro 312 RLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL 363 (383) Q Consensus 312 ~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~ 363 (383) +.+|.. .++++...+++.|...+...+.+++++|++|+||+|+++|++|+. T Consensus 309 ~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 309 RIKCDS-SIGVDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHhhh-hhcccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 555532 256676777777777777788899999999999999999999998 No 47 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=5.5e-76 Score=433.17 Aligned_cols=358 Identities=16% Similarity=0.176 Sum_probs=278.9 Q ss_pred ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch---------hhhhhhCCCccCCHH Q lcl|Aclame:pro 16 NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA---------TLNRLESPSSLIGRF 86 (383) Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~---------~~~l~~~PN~~~s~~ 86 (383) -++.++..+.+..|. ......++.+.++++++|++||++||++||++|+++++.. .++|+.+||++||++ T Consensus 1 ~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t~~ 79 (723) T protein:vir:94 1 MTTFPSGAGGWNAWS-ADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMPAQ 79 (723) T ss_pred CcccccCCCcccccc-ccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCCHH Confidence 122222333333332 2233346678899999999999999999999999998643 234566899999999 Q ss_pred HHHHHHHHHHHhcCCceEEEEecc-------ceEEeecCcceeeeecCCc-------eEEEEEEecCceEEEEchhheEE Q lcl|Aclame:pro 87 SFWQGALMQLCLSGNDYIPLVGQN-------LEHIPNSDVQINYLPGNMG-------IVYTVLESNDRPKMVLRQDQMLH 152 (383) Q Consensus 87 ~f~~~~~~~l~l~G~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vih 152 (383) +||+.++.+|+++||+|+++.++. .+++++++..+.+....++ ...|.+...++..+.+++++||| T Consensus 80 ~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~~~dIiH 159 (723) T protein:vir:94 80 VLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPVLADEMLW 159 (723) T ss_pred HHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeEEecccceEE Confidence 999999999999999999987542 3556666544444332221 22233444566678899999999 Q ss_pred ecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC-cccCC Q lcl|Aclame:pro 153 FRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG-DNSGR 231 (383) Q Consensus 153 ~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~n~g~ 231 (383) ||++++ .++++|+||+.++..++..+.++++++.++|+||++|+++|+.++ .++++.+++++.|++.++| .|+|+ T Consensus 160 ir~~~~--~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~~--l~~e~~~~~~~~~~~~~~G~~Nagk 235 (723) T protein:vir:94 160 LRFSDP--YDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLGD--MDEQTFTKTVAAFRSQVEGVQNAGR 235 (723) T ss_pred ecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCC--CCHHHHHHHHHHHHHHhhchhhcCc Confidence 997643 336789999999999999999999999999999999999999763 4778999999999999988 69999 Q ss_pred ceecc----------CCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-HHHHHHHHHH Q lcl|Aclame:pro 232 LMVLP----------DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-QIKATYLANL 300 (383) Q Consensus 232 ~~vl~----------~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~~~~~~~~tl 300 (383) ++|++ .|++|++++++++|+|++ |++++++++||++|||||++|+.. + ++++.+ +...++..|| T Consensus 236 ~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~l-e~r~~~~~eIa~afgVPp~~i~~~--s--t~sN~e~~~~~f~~~tL 310 (723) T protein:vir:94 236 HLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYI-NSRMHSAEEVMLAFGIRKDALLGG--S--TYENQAEAKAAVWTETL 310 (723) T ss_pred ceeecccccccccccCCceEEEccCCHHHHHHH-HHHHHhHHHHHHHhCCChhHcCCC--C--CcccHHHHHHHHHHHHH Confidence 99985 589999999999999975 999999999999999999999742 2 333444 4456677899 Q ss_pred HHHHHHHHHHHHhhcCCc-----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC- Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT- 374 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~-----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~- 374 (383) .||++.||++|+++|+.. +++||..+++++|.+++++++.+++++|++|+||+|+++|++|+|+||......+. T Consensus 311 ~P~~~~ie~~ln~~Ll~~~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~~ 390 (723) T protein:vir:94 311 IPQMEVMASITDLQLLPDIGWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLTPYR 390 (723) T ss_pred HHHHHHHHHHHhHhhcccccCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceecccc Confidence 999999999999999743 46667778999999999999999999999999999999999999998843322211 Q ss_pred CC-------CCCCCCC Q lcl|Aclame:pro 375 NE-------TKGGDDK 383 (383) Q Consensus 375 ~~-------~~gGd~~ 383 (383) .+ .++.+|. T Consensus 391 ~~~a~~~~~~p~~~e~ 406 (723) T protein:vir:94 391 AQFAPAPAPAPAVEEG 406 (723) T ss_pred ccccCCCCCCccchhh Confidence 11 1111111 No 48 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=6.8e-76 Score=432.69 Aligned_cols=369 Identities=16% Similarity=0.187 Sum_probs=288.4 Q ss_pred Cc---ccchhccc---cccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MG---LLTPKNFS---KRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) |. ++.|+... +...++.+.. ..+..|. +.....++.+.++++++|++||++||++||++|+++++. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~~ 76 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKL---YDFSPWK-NKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV 76 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccc---ccccccc-CccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeeccccc Confidence 43 33332211 1111111111 1122222 223345788899999999999999999999999998643 Q ss_pred --h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEecCceE Q lcl|Aclame:pro 71 --A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESNDRPK 142 (383) Q Consensus 71 --~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 142 (383) + .++|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|..+.+..+. .+.++|.+...++.. T Consensus 77 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~ 156 (409) T protein:vir:94 77 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNK 156 (409) T ss_pred chhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceE Confidence 2 344667899999999999999999999999999998753 56788888777665443 445556666666777 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) +.+++++|||+|+++. .++++|.||+.++...+.++.++.++. ++.++..++++++.+.. .++++.+++++.|++ T Consensus 157 ~~~~~~dvih~r~~~~--~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~-l~~e~~~~~~~~~~~ 231 (409) T protein:vir:94 157 LIVHNMDMLHFKHIVA--SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN-VGKEKRQQVLEDFKQ 231 (409) T ss_pred EEEccccEEEecCCCC--CCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEecCCC-CCHHHHHHHHHHHHH Confidence 8899999999997543 336789999999999999999998885 44455555666665554 467889999999998 Q ss_pred HhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-HHHHHHH Q lcl|Aclame:pro 223 ANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TYLANLN 301 (383) Q Consensus 223 ~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~~~~tl~ 301 (383) .++ ++|+++++++|++|++++++++|+|++ |.+++++++||++|||||++||....+ ++++.|++.. ++..||. T Consensus 232 ~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~~~--~~sn~e~~~~~f~~~~l~ 306 (409) T protein:vir:94 232 YYE--ENGGILFQEPGVEIEPLPKKYVSEDIV-ASENLTRERVANVFQLPSVFLNARSNT--NFAKNEELNRFYLQHTLL 306 (409) T ss_pred Hhh--cCCCeeecCCCceEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--CcccHHHHHHHHHHHHHH Confidence 874 578899999999999999999999975 999999999999999999999975444 5556666554 5566999 Q ss_pred HHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC Q lcl|Aclame:pro 302 SYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT 374 (383) Q Consensus 302 p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~ 374 (383) |++++|+++++++|++ .+++||+++++++|.+++++++++++++|++|+||+|+++|++|+|++|.+....+. T Consensus 307 P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~ 386 (409) T protein:vir:94 307 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 386 (409) T ss_pred HHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeecccc Confidence 9999999999999974 469999999999999999999999999999999999999999999999986655443 Q ss_pred C----------CCCCCCCC Q lcl|Aclame:pro 375 N----------ETKGGDDK 383 (383) Q Consensus 375 ~----------~~~gGd~~ 383 (383) . ..||||+- T Consensus 387 ~~~~~~~~~~~~~kGG~~n 405 (409) T protein:vir:94 387 YPIDTPLELRKSLKGGDKN 405 (409) T ss_pred cccccchhhcccccCCCCC Confidence 2 34677554 No 49 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=3.3e-76 Score=434.43 Aligned_cols=374 Identities=13% Similarity=0.137 Sum_probs=291.9 Q ss_pred Ccccchhccccccccccccccchhhhhhhc---cCccc--ccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchh--- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTV---GGMQL--SYVSALSALQNTNVYSVINRIASDVSSAHFKTENTAT--- 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~--- 72 (383) =+++.|++++.+ +......+.|...++ ++.+. ..++.+.++++|+|++||++||++||+|||++++... T Consensus 2 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g~ 78 (460) T protein:vir:10 2 ANRIIRALRELT---GLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTKA 78 (460) T ss_pred chhHHHHHhhhh---ccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCcc Confidence 244444443332 222222333332222 22222 2367788999999999999999999999999975431 Q ss_pred ------------------------------------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc------ Q lcl|Aclame:pro 73 ------------------------------------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN------ 110 (383) Q Consensus 73 ------------------------------------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~------ 110 (383) ..|+.+||++||+++||+.++.+++++||||++++++. T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G 158 (460) T protein:vir:10 79 YQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAG 158 (460) T ss_pred chhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCc Confidence 34788999999999999999999999999999998742 Q ss_pred --ceEEeecCcceeeeecCCceEE-------EEEEecCceEEEEchhheEEecccCcccc---CccccCcHHHHHHHHHH Q lcl|Aclame:pro 111 --LEHIPNSDVQINYLPGNMGIVY-------TVLESNDRPKMVLRQDQMLHFRLMPDPQY---RYLIGRSPLESLQNALN 178 (383) Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~vih~r~~~~~~~---~~~~G~spi~~~~~~i~ 178 (383) .+++|++|..+.+..+.++..+ .+....++....+++++|||||+++++.. .+++|+||+.+++.++. T Consensus 159 ~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~ 238 (460) T protein:vir:10 159 VPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNIN 238 (460) T ss_pred eeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHH Confidence 3578888888877766554322 23334567778999999999998765422 35789999999999999 Q ss_pred HHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHH Q lcl|Aclame:pro 179 LDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADN 257 (383) Q Consensus 179 ~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~ 257 (383) .+.++.+++.++|+||+.|+++++.+..+ ++++++++++.|++.++| .|+|+++++++|++|+++++++.|+|++ |. T Consensus 239 ~~~~~~~~~~~~f~ng~~~~~i~~~~~~l-~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~-e~ 316 (460) T protein:vir:10 239 SQNSTIDNNVKTMQNGGVFGFIHGGSTGL-TQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPF-DY 316 (460) T ss_pred HHHHHHHHHHHHHhcCCCcceeeecCCCC-CHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHH-HH Confidence 99999999999999999999988877765 568889999999999988 6889999999999999999999999975 99 Q ss_pred HHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhh-- Q lcl|Aclame:pro 258 SAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDM-- 327 (383) Q Consensus 258 ~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~l-- 327 (383) +++.+++||++|||||++||..++++.++++.|++.. ++..||.||++.||++|+++|++ .+++||++.+ T Consensus 317 ~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~ 396 (460) T protein:vir:10 317 LKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPE 396 (460) T ss_pred HHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhh Confidence 9999999999999999999988777777777777665 45569999999999999999974 3588998887 Q ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCcc--CCccccccCCCCCC--------CCCCCC Q lcl|Aclame:pro 328 LDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL--PDNLPEFKPLTNET--------KGGDDK 383 (383) Q Consensus 328 l~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~--~~d~~~~~~~~~~~--------~gGd~~ 383 (383) ++.|.++++ .++++|++|+||+|+++|++|++ ++|......+..++ +++++| T Consensus 397 l~~d~~~~~----~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~~~~~~nq 458 (460) T protein:vir:10 397 MQTDMVAMA----SWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVSNNLIDSAFNQ 458 (460) T ss_pred HHHHHHHHH----HHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcccccCCCcccC Confidence 455555444 46789999999999999999995 45654444333322 344555 No 50 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=5.3e-76 Score=433.28 Aligned_cols=370 Identities=25% Similarity=0.414 Sum_probs=303.9 Q ss_pred Ccccchhcccccccccccc----ccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVY----PSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRL 76 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~ 76 (383) ||||++++..+.++..... ..++.++..+ .....++.+.++++|+|++||++||++||++|++++++..+.|+ T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~l~ 77 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGGFFDITDPDFLSTL---NGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASRKQLQGII 77 (386) T ss_pred Ccccccccccccccccccccccccccchhcccc---cCCceechhhhhcchHHHHHHHHHHHhhccCceeeccchhHHHh Confidence 9999987666654443221 1222222222 23345889999999999999999999999999999999999999 Q ss_pred hCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC-ceEEEEEEecC---ceEEEEchh Q lcl|Aclame:pro 77 ESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM-GIVYTVLESND---RPKMVLRQD 148 (383) Q Consensus 77 ~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 148 (383) .+||++||+++|++.++.+++++||||+++.++. ..++|+++..+.+..+.+ +..+|.+..++ +..+.++++ T Consensus 78 ~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 157 (386) T protein:vir:48 78 DNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQG 157 (386) T ss_pred hcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEecCccccceeEecCc Confidence 9999999999999999999999999999998753 467777777777655543 33444443333 345789999 Q ss_pred heEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 149 QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDN 228 (383) Q Consensus 149 ~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n 228 (383) +|||+|+++.++ .++|.||+.++..++..+.++.+++.++|+||++|+++++.++..+ +++.+++++.|.... .| T Consensus 158 evih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~-~e~~~~~~~~~~~~~--~n 232 (386) T protein:vir:48 158 DVLHFKLLSVDG--GLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGL-LDFKTKLSRSRQAMK--QM 232 (386) T ss_pred cEEEecCCCCCC--ceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC-HHHHHHHHHHHHHhh--cC Confidence 999999876554 4689999999999999999999999999999999999999998765 467777888877644 57 Q ss_pred cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 229 SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIV 308 (383) Q Consensus 229 ~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~ 308 (383) +|+++|+++|++|++++++++++|++ |++++++++||++|||||.+||.. ++ +.+..++...++..||.|+++.|| T Consensus 233 ~g~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~--~~-~~~~e~~~~~~~~~~l~P~~~~ie 308 (386) T protein:vir:48 233 QGGPLVLDDLEEFTPLEIKSNVSQLL-KQADWTTGQFAKVYGIPENVVGGQ--GD-QQSSLEMSLDLYNKAVSRYLRPFL 308 (386) T ss_pred CCCceecCCCceEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCC--CC-cccHHHHHHHHHHHHHHHHHHHHH Confidence 89999999999999999999999974 999999999999999999999852 22 222334555667789999999999 Q ss_pred HHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccC-CCCCCCCCCCC Q lcl|Aclame:pro 309 DELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKP-LTNETKGGDDK 383 (383) Q Consensus 309 ~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~-~~~~~~gGd~~ 383 (383) ++++++|+. ++++|....++.|...++..+++++++|++|+||+|+++|++|+.++|.+.... +..+.+|||+- T Consensus 309 ~~l~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~~~~~~~~~~gGd~~ 383 (386) T protein:vir:48 309 SELSQKLSC-DVDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILPKELPEGENPNKTTLKGGEIN 383 (386) T ss_pred HHHHHhhcc-hhhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCCccchhhcCCCCCccCCCCCC Confidence 999999976 578888888999999999999999999999999999999999999888766554 45678899766 No 51 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=1.2e-75 Score=431.39 Aligned_cols=369 Identities=16% Similarity=0.189 Sum_probs=286.0 Q ss_pred Cc---ccchhccc---cccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---- Q lcl|Aclame:pro 1 MG---LLTPKNFS---KRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---- 70 (383) Q Consensus 1 Mg---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---- 70 (383) |. ++.|+... +-..++.....+ +..+. ......++...++++++|++||++||++||++|+++++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~~ 76 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYD---FSPWK-NRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV 76 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccccc---ccccc-CccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeeccccc Confidence 43 33332111 000011111111 11221 123344678899999999999999999999999998643 Q ss_pred --h-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeec-CCceEEEEEEecCceE Q lcl|Aclame:pro 71 --A-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPG-NMGIVYTVLESNDRPK 142 (383) Q Consensus 71 --~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 142 (383) + .++|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|..+.+..+ +.+.++|.+...++.. T Consensus 77 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~g~~ 156 (409) T protein:vir:93 77 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNK 156 (409) T ss_pred cchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceE Confidence 2 345667899999999999999999999999999998753 4677777777665543 3445556666666777 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) +.+++++|||+|+++. .++++|.||+.++...+.++.+++++. ++.++..++++++.+.. .++++++++++.|++ T Consensus 157 ~~~~~~eVih~r~~~~--~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~-l~~e~~~~~~~~~~~ 231 (409) T protein:vir:93 157 LIVHNMDMLHFKHIVA--SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN-VGKEKRQQVLEDFKQ 231 (409) T ss_pred EEEccccEEEeCCCCC--CCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCC-CCHHHHHHHHHHHHH Confidence 8899999999997543 336789999999999999999998885 45555556666665554 467888999999998 Q ss_pred HhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-HHHHHHHH Q lcl|Aclame:pro 223 ANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-ATYLANLN 301 (383) Q Consensus 223 ~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-~~~~~tl~ 301 (383) .+. ++|+++++++|++|+++++++.|+|++ |++++++++||++|||||++||....+ ++++.|++. .++..||. T Consensus 232 ~~~--~~g~~~vl~~g~~~~~l~~~~~d~q~~-e~r~~~~~~Ia~~fgVPp~~lg~~~~~--~~sn~e~~~~~f~~~~l~ 306 (409) T protein:vir:93 232 YYE--ENGGILFQEPGVEIEPLPKKYVSEDIV-ASENLTRERVANVFQLPSVFLNARSNT--NFAKNEELNRFYLQHTLL 306 (409) T ss_pred Hhh--cCCCeeecCCCceEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCC--CcccHHHHHHHHHHHHHH Confidence 774 578899999999999999999999975 999999999999999999999975444 455566655 45567999 Q ss_pred HHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC Q lcl|Aclame:pro 302 SYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT 374 (383) Q Consensus 302 p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~ 374 (383) |++++||++++++|++ .+|+||+++++++|.+++++++++++++|++|+||+|+++|++|+|++|.+....+. T Consensus 307 P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~ 386 (409) T protein:vir:93 307 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 386 (409) T ss_pred HHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccc Confidence 9999999999999974 369999999999999999999999999999999999999999999999986655444 Q ss_pred C----------CCCCCCCC Q lcl|Aclame:pro 375 N----------ETKGGDDK 383 (383) Q Consensus 375 ~----------~~~gGd~~ 383 (383) . ..+|||+- T Consensus 387 ~~~~~~~~~~~~~~gG~~n 405 (409) T protein:vir:93 387 YPIDTPLELRKSLKGGDKN 405 (409) T ss_pred cccccchhhcccccCCCCC Confidence 3 23566443 No 52 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1.9e-75 Score=430.21 Aligned_cols=372 Identities=23% Similarity=0.373 Sum_probs=302.8 Q ss_pred Ccccchhcccccccccccc-----ccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVY-----PSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNR 75 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l 75 (383) ||||+++++.+..+..... ......+..+..+.....++.+.++++|+|++||++||++||++|++++++....| T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~l 82 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchhhhH Confidence 9999987665544332211 11222233333444455689999999999999999999999999999999999999 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEec---CceEEEEch Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESN---DRPKMVLRQ 147 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 147 (383) +.+||++||+++|++.++.+++++||||++++++. .+++|+++.++.+..+. ++..+|.+... +.....+++ T Consensus 83 ~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 162 (392) T protein:vir:39 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) T ss_pred hhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCcccceeEEEcc Confidence 99999999999999999999999999999998753 47888888877765543 33444443332 234578999 Q ss_pred hheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 148 DQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG- 226 (383) Q Consensus 148 ~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 226 (383) ++|||+|+++.++ ..+|+||+.++..++..+.++.+++.++|+||++|+++++.++...++++ .++.|.+.+.+ T Consensus 163 ~eiih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~---~~~~~~~~~~~~ 237 (392) T protein:vir:39 163 SDLIHMKLLSIDG--GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK---DKASRSRSFMKR 237 (392) T ss_pred ccEEEecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHH---HHHHHHHHHhcc Confidence 9999999876554 36899999999999999999999999999999999999999876544322 22344444444 Q ss_pred cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 227 DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNP 306 (383) Q Consensus 227 ~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~ 306 (383) .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||... .++++.++...++..||.|+++. T Consensus 238 ~~~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgVpp~~lg~~~---~~~~~~~~~~~f~~~~l~P~~~~ 313 (392) T protein:vir:39 238 SRSGGPVVLDDLEEFTALEIKSNVAQLL-SQTDWTSKQYAKVYGLPDSYIGGQG---DQQSSIQQISGMYASALNRYLRP 313 (392) T ss_pred ccCCCeeecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCC---CcccHHHHHHHHHHHHHHHHHHH Confidence 6889999999999999999999999975 9999999999999999999998642 23355677778888899999999 Q ss_pred HHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 307 IVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 307 i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) |+++++++|+. +++||...+++.|..++++.+++++++|++|+||+|+++...++.+.+ .+...+.++++|||+. T Consensus 314 ie~~l~~~L~~-~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e-~r~~e~l~~~~~Gd~~ 388 (392) T protein:vir:39 314 AISELEYKLSD-HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAPENTNKKTTGQSN 388 (392) T ss_pred HHHHHHHhccc-cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc-cchhcCCCCCCCCCCC Confidence 99999999875 489999999999999999999999999999999999999777777644 4455678889999877 No 53 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1.9e-75 Score=430.21 Aligned_cols=372 Identities=23% Similarity=0.373 Sum_probs=302.8 Q ss_pred Ccccchhcccccccccccc-----ccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVY-----PSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNR 75 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l 75 (383) ||||+++++.+..+..... ......+..+..+.....++.+.++++|+|++||++||++||++|++++++....| T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~l 82 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKNQGI 82 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchhhhH Confidence 9999987665544332211 11222233333444455689999999999999999999999999999999999999 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEec---CceEEEEch Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESN---DRPKMVLRQ 147 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~ 147 (383) +.+||++||+++|++.++.+++++||||++++++. .+++|+++.++.+..+. ++..+|.+... +.....+++ T Consensus 83 ~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 162 (392) T protein:vir:10 83 IDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQ 162 (392) T ss_pred hhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCcccceeEEEcc Confidence 99999999999999999999999999999998753 47888888877765543 33444443332 234578999 Q ss_pred hheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 148 DQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG- 226 (383) Q Consensus 148 ~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 226 (383) ++|||+|+++.++ ..+|+||+.++..++..+.++.+++.++|+||++|+++++.++...++++ .++.|.+.+.+ T Consensus 163 ~eiih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~---~~~~~~~~~~~~ 237 (392) T protein:vir:10 163 SDLIHMKLLSIDG--GKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK---DKASRSRSFMKR 237 (392) T ss_pred ccEEEecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHH---HHHHHHHHHhcc Confidence 9999999876554 36899999999999999999999999999999999999999876544322 22344444444 Q ss_pred cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 227 DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNP 306 (383) Q Consensus 227 ~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~ 306 (383) .|+|+++|+++|++|++++++++|+|++ |++++++++||++|||||++||... .++++.++...++..||.|+++. T Consensus 238 ~~~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgVpp~~lg~~~---~~~~~~~~~~~f~~~~l~P~~~~ 313 (392) T protein:vir:10 238 SRSGGPVVLDDLEEFTALEIKSNVAQLL-SQTDWTSKQYAKVYGLPDSYIGGQG---DQQSSIQQISGMYASALNRYLRP 313 (392) T ss_pred ccCCCeeecCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCC---CcccHHHHHHHHHHHHHHHHHHH Confidence 6889999999999999999999999975 9999999999999999999998642 23355677778888899999999 Q ss_pred HHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 307 IVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 307 i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) |+++++++|+. +++||...+++.|..++++.+++++++|++|+||+|+++...++.+.+ .+...+.++++|||+. T Consensus 314 ie~~l~~~L~~-~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e-~r~~e~l~~~~~Gd~~ 388 (392) T protein:vir:10 314 AISELEYKLSD-HISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD-LPAPENTNKKTTGQSN 388 (392) T ss_pred HHHHHHHhccc-cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc-cchhcCCCCCCCCCCC Confidence 99999999875 489999999999999999999999999999999999999777777644 4455678889999877 No 54 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=2.1e-75 Score=429.98 Aligned_cols=373 Identities=25% Similarity=0.390 Sum_probs=302.7 Q ss_pred Ccccchhccccccccccccccchhh-hhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAF-FTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESP 79 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~P 79 (383) ||||++++..+.+............ ...+........++.+.++++|+|++||++||++||++|++++++..+.|+.+| T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~l~~~P 80 (386) T protein:vir:49 1 MPIFNITNLATESPPINQESFFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQLQGIVDNP 80 (386) T ss_pred CchhhhhccCCCCcccchhhhhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccchhhhhhhcc Confidence 9999987654433221111100000 011112223345889999999999999999999999999999999999999999 Q ss_pred CccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC-c-eEEEEEEe--cCceEEEEchhheE Q lcl|Aclame:pro 80 SSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM-G-IVYTVLES--NDRPKMVLRQDQML 151 (383) Q Consensus 80 N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~vi 151 (383) |++||+++||+.++.+++++||||++++++. ..+++++|.++.+..+.. + ..|.+... .++..+.+++++|| T Consensus 81 N~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evi 160 (386) T protein:vir:49 81 SNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPHIAPKQHVPQNDIL 160 (386) T ss_pred CCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEEcCccccceeEEccccEE Confidence 9999999999999999999999999998754 467777777766555433 3 33333322 24556789999999 Q ss_pred EecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCC Q lcl|Aclame:pro 152 HFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGR 231 (383) Q Consensus 152 h~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~ 231 (383) |+|+++.++ .++|.||+.++...+....++.+++.++|+||+.|+++++.++...+ ++.+++++.|+... .|+|+ T Consensus 161 h~~~~~~~~--~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~-~~~~~~~~~~~~~~--~n~g~ 235 (386) T protein:vir:49 161 HFRLLSVDG--GLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLL-DFKTKVSRSRQAMK--QMQGG 235 (386) T ss_pred EecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCCh-HHHHHHHHHHHHhc--cCCCC Confidence 999876554 46899999999999999999999999999999999999999988765 55667777777533 68899 Q ss_pred ceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 LMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDEL 311 (383) Q Consensus 232 ~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l 311 (383) ++|+++|++|++++.++.|+|+ .|++++.+++||++|||||++||+... ++++.++..+++..+|.|+++.|++++ T Consensus 236 ~~vl~~g~~~~~l~~~~~d~~~-~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~~~~~~~~~~~~~~~i~~~l~~i~~~~ 311 (386) T protein:vir:49 236 PLVLDDLEDFTPLEIKSNVAQL-LSQADWTTGQFAKVYGIPESIVGGDGD---QQSSLEMIYNIYFKSVSRYLRPFVSEM 311 (386) T ss_pred ceecCCCceEEEccCChhHHHH-HHHHHHHHHHHHHHhCCCHHHhCCCCC---ccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999997 499999999999999999999996433 334456677888889999999999999 Q ss_pred HhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCC-CCCCCCCCCC Q lcl|Aclame:pro 312 RLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPL-TNETKGGDDK 383 (383) Q Consensus 312 ~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~-~~~~~gGd~~ 383 (383) +++|+. +++||.+.+++.|..+++..+++++++|++|+||+|++++..++.+.+.+..... ..++||||+. T Consensus 312 ~~~l~~-~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~~~~~~~~~~~gGd~~ 383 (386) T protein:vir:49 312 SKKLSC-EVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPKELPDGKNPNRTSLKGGEIN 383 (386) T ss_pred HHHhcc-hhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcchhccCCCCCCCCCCC Confidence 999864 6899999999999999999999999999999999999999998888777665543 3567899766 No 55 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=1.4e-74 Score=425.47 Aligned_cols=365 Identities=19% Similarity=0.196 Sum_probs=291.8 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcc--cccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc-------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQ--LSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT-------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~-------- 70 (383) ||||+++++.+++..... .+.+...+.++.. ...++...++++++|++||++||++||++||++++. T Consensus 1 Mg~f~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~ 77 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRA---DTGYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIRI 77 (406) T ss_pred Ccchhhhccccccccccc---cchhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCcceee Confidence 999998765443333222 2233333333222 334567889999999999999999999999998643 Q ss_pred ---hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEE--EEec----cceEEeecCcceeeeecCCceEEEEEEecCce Q lcl|Aclame:pro 71 ---ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIP--LVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESNDRP 141 (383) Q Consensus 71 ---~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383) ..++|+.+||++||+++|++.++.+++++|+++++ +.++ ..+++|++|.++.+..+.++..+. .++ T Consensus 78 ~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~~~~---~~~-- 152 (406) T protein:vir:95 78 RNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGYQVL---YGG-- 152 (406) T ss_pred cchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeEEEE---ecc-- Confidence 24568899999999999999999999999776554 5553 257889999888888777663332 122 Q ss_pred EEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHH Q lcl|Aclame:pro 142 KMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFE 221 (383) Q Consensus 142 ~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~ 221 (383) ..|++++|||+|+... ...+.+|.||+.++..++.++.++.+++.++|+||++|+++++.++.++ +++.+++++.|. T Consensus 153 -~~~~~~evih~~~~~~-~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~-~e~~~~~~~~~~ 229 (406) T protein:vir:95 153 -QTFNYDEVLHFIYNPD-PERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATA-ELSSEEGRNAVF 229 (406) T ss_pred -EEEchhHEEEeeccCC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCC-HHHHHHHHHHHH Confidence 4699999999996432 3335689999999999999999999999999999999999999988764 577889999999 Q ss_pred HHhcC-cccCCceecc-CCceeEec-ccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHH Q lcl|Aclame:pro 222 KANTG-DNSGRLMVLP-DGFDYTQL-EMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLA 298 (383) Q Consensus 222 ~~~~g-~n~g~~~vl~-~g~~~~~l-~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~ 298 (383) +.+.| .|+|+++|+. +|.+++++ +++++|+|++ |.+++++++||++|||||++||.... ..++...++.. T Consensus 230 ~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~-e~~~~~~~~Ia~~fgVp~~~lg~~~~------~~~~~~~~~~~ 302 (406) T protein:vir:95 230 KKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAIN-EAVELDKRTVAGMFGVPAFLLGIGEF------NRDEYNNFINS 302 (406) T ss_pred HHhccccccCCceeecCCCccccccccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCCc------hHHHHHHHHHH Confidence 99887 6888888875 45666665 4789999975 99999999999999999999985321 22445667788 Q ss_pred HHHHHHHHHHHHHHhhcCCc---eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC Q lcl|Aclame:pro 299 NLNSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN 375 (383) Q Consensus 299 tl~p~~~~i~~~l~~~l~~~---~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~ 375 (383) ||.|++++|+++|+++|+.+ +++||++++++.|.+++++.+.+++++|++|+||+|+++|++|+|++|......+.. T Consensus 303 ~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~~ 382 (406) T protein:vir:95 303 TILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENYI 382 (406) T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCcc Confidence 99999999999999999864 699999999999999999999999999999999999999999999988766554442 Q ss_pred ---------CCCCCCCC Q lcl|Aclame:pro 376 ---------ETKGGDDK 383 (383) Q Consensus 376 ---------~~~gGd~~ 383 (383) ..||||+. T Consensus 383 ~~~~~~~~~~~k~g~~~ 399 (406) T protein:vir:95 383 PLDKIGDQSKLKGGDNS 399 (406) T ss_pred chhhcccccccCCCCCC Confidence 23666555 No 56 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=1.7e-74 Score=425.02 Aligned_cols=370 Identities=24% Similarity=0.408 Sum_probs=302.4 Q ss_pred Ccccchhcccccccccccccc-chhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPS-NPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESP 79 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~P 79 (383) ||||+++++++...+...... ++.++..+. ....++.+.++++++|++||++||++||++|++++++....|+.+| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~L~~~P 77 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFLASLK---GNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKKLQGIVDNP 77 (382) T ss_pred CccccccccCCcccccccccchhhhcccccc---CCcccchHhhhccHHHHHHHHHHHHhhccCceeeecchhhhhhhhc Confidence 999999877665444332222 222222222 2235788999999999999999999999999999999999999999 Q ss_pred CccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC-ceEEEEEEecC---ceEEEEchhheE Q lcl|Aclame:pro 80 SSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM-GIVYTVLESND---RPKMVLRQDQML 151 (383) Q Consensus 80 N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~vi 151 (383) |++||+++|++.++.+|+++||||++++++. .+++|+++.++.+..+.. +.++|.+..++ +..+.+++++|| T Consensus 78 N~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evi 157 (382) T protein:vir:48 78 SNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQNDVL 157 (382) T ss_pred CCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEecCccccceeEEcCccEE Confidence 9999999999999999999999999998753 477888888877665443 33344443332 345789999999 Q ss_pred EecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCC Q lcl|Aclame:pro 152 HFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGR 231 (383) Q Consensus 152 h~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~ 231 (383) |+|+++.++ .++|.||+.++..++....++.+++.++|+||++|+++++.++...+ ++.+++++.|.... .|+|+ T Consensus 158 h~~~~~~~~--~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~-e~~~~~~~~~~~~~--~n~g~ 232 (382) T protein:vir:48 158 HFRLLSVDG--GMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLL-DFKTKLSRSRQAMK--QMQGG 232 (382) T ss_pred EecCCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCh-HHHHHHHHHHHhhc--cCCCC Confidence 999876554 46899999999999999999999999999999999999999987655 56677777776543 57899 Q ss_pred ceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 LMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDEL 311 (383) Q Consensus 232 ~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l 311 (383) ++|+++|++|++++.++.|+|++ |.+++.+++||++|||||.+||..... ++..++...++..+|.|+++.|++++ T Consensus 233 ~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~afgVp~~~lg~~~~~---~~~~~~~~~~~~~~l~p~~~~i~~~l 308 (382) T protein:vir:48 233 PLVLDDLEDFTPLEIKSNVSQLL-KQADWTTGQFAKVYGIPDNVVGGQGDQ---QSSLEMSSDLYSKAVSRYLRPFLSEL 308 (382) T ss_pred eeEcCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhCCCHHHhCCCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999975 999999999999999999999964332 33456667788889999999999999 Q ss_pred HhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 312 RLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 312 ~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +++|+.. ++++....+..|.......+++++++|++|+||+|++++..++.+.+.+.......++|||||. T Consensus 309 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~~~~~~~~~~~~~GGd~~ 379 (382) T protein:vir:48 309 SQKLSCD-VDADIFPAVDPTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKELPNGENPNSTLKGGEED 379 (382) T ss_pred HHHhcCh-hhhhhhhhhccchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcchhhhhcCCCCCCCCCCC Confidence 9999764 4555555556666677778889999999999999999988888777777776666779999888 No 57 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=1.5e-74 Score=425.30 Aligned_cols=361 Identities=15% Similarity=0.124 Sum_probs=277.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc--------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT--------AT 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~--------~~ 72 (383) ||||++++.+..+...... ....++... .......++.+.++++++|++||++||++||+|||++++. +. T Consensus 1 MGl~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~~~~~~~~ 78 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRG-YLDNVLGKS-IRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFGNEIKDDIA 78 (394) T ss_pred CchhhhhhhhccCCCCchh-hhhhhhhcc-cccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCCcccchhhH Confidence 9999998544322222111 111111111 1112234788999999999999999999999999999753 35 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEE Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLH 152 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih 152 (383) ..|+.+||++||+++||+.++.+++++||+|+++.++.++++ +++.+ ..++.+..+ +.. + .++|++++|+| T Consensus 79 ~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~--~~~~~--~~~~~~~~~--~~~-~--~~~~~~~eiih 149 (394) T protein:vir:62 79 LQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLA--SNVFT--ELDDNLVEH--FNI-G--GHEIPPCMIRH 149 (394) T ss_pred HHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeecc--ccceE--EECCceEEE--Eee-C--CEEechhheEE Confidence 678999999999999999999999999999999988776553 33333 233332222 222 2 35799999999 Q ss_pred ecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC-CHHHHHHHHHHHHHHhcC-cccC Q lcl|Aclame:pro 153 FRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS-DGKDLESAREEFEKANTG-DNSG 230 (383) Q Consensus 153 ~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~n~g 230 (383) +|+++.+ +++|+||+..+..++..+.++++++.++|+||++|+++++.+.... ++++++++++.|++.++| .|+| T Consensus 150 ~r~~~~d---~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g 226 (394) T protein:vir:62 150 VKNIGAD---HLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILDQLESIDEAR 226 (394) T ss_pred ecCcCCC---CccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhccccccC Confidence 9976644 5689999999999999999999999999999999999999988765 445678899999999988 6889 Q ss_pred CceeccCCc--eeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 RLMVLPDGF--DYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ-IKATYLANLNSYVNPI 307 (383) Q Consensus 231 ~~~vl~~g~--~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-~~~~~~~tl~p~~~~i 307 (383) +++|++.|. ++++++.++.|+|++ |++++++++||++|||||.+||... +++.|+ ...++..||.|++++| T Consensus 227 ~~~vl~~g~~~~~~~l~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~-----~sn~e~~~~~~~~~~l~P~~~~i 300 (394) T protein:vir:62 227 SVKMIPLGKGYSIDTLKSPLDDEKTL-AYLNVYKKDLGKFLGINVDTYTELI-----KEDIEKAMMYIHNKAVRPIMKNF 300 (394) T ss_pred ceeEeeCCCceeEEecCCCcchHHHH-HHHHHHHHHHHHHhCCCHHHcCCCC-----CcCHHHHHHHHHHHHHHHHHHHH Confidence 999987665 666888889999975 9999999999999999999998543 234454 4556677999999999 Q ss_pred HHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccccc--CC------ Q lcl|Aclame:pro 308 VDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK--PL------ 373 (383) Q Consensus 308 ~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~--~~------ 373 (383) |++|+++|+++ +++||...+++ ..++++++.+++++|+||+||+|+++|++|+++++.+... .+ T Consensus 301 e~~l~~kll~~~~~~~~~~~fd~~~~~~--~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~ 378 (394) T protein:vir:62 301 EDHLSLLFYAQNSGKRIKFKINILDFVT--YSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVTEIGK 378 (394) T ss_pred HHHHhhhhcCccccCceEEEechhhhcC--HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeecccccccccc Confidence 99999999864 46677666654 4567889999999999999999999999999544432222 21 Q ss_pred ----CCCCCCCCCC Q lcl|Aclame:pro 374 ----TNETKGGDDK 383 (383) Q Consensus 374 ----~~~~~gGd~~ 383 (383) ..+.||||+. T Consensus 379 ~~~~~~~~kgge~~ 392 (394) T protein:vir:62 379 KEATDGSLGGGEEN 392 (394) T ss_pred cccccccCCCCCCC Confidence 2345788754 No 58 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=2.6e-74 Score=424.05 Aligned_cols=366 Identities=15% Similarity=0.215 Sum_probs=282.8 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT---------- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~---------- 70 (383) |||++++..+....+. ........ ... .......+.+.++++++|++||++||++||++|+++++. T Consensus 1 mg~~~~~~~~~~~~~~-~~~~~~~~-~~~--~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~~~~ 76 (403) T protein:vir:10 1 MGFKSWITEKLNPGQR-IIRDMEPV-SHR--TNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVTYANGV 76 (403) T ss_pred Ccchhhhhhccchhhh-hhhccccc-ccc--cCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeeccccccccccc Confidence 9999987544322211 11111000 000 011122466889999999999999999999999998642 Q ss_pred ----hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEc Q lcl|Aclame:pro 71 ----ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLR 146 (383) Q Consensus 71 ----~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (383) ..++|+.+|||+||+++|++.++.+++++||||+++.+..++++|++.+++ ..+.++.++++... + ...++ T Consensus 77 ~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~~~l~~l~~~~~~v--~~~~~~~~~~~~~~-~--~~~~~ 151 (403) T protein:vir:10 77 KTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDGTSLYHVPAALMQV--EADANKFIKKFIFN-N--QINYR 151 (403) T ss_pred ccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeCceeEeecCcceEE--EEcCCceEEEEEec-C--ceeec Confidence 134567789999999999999999999999999998877766666555554 44455555444332 2 24588 Q ss_pred hhheEEecccCc--cccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 147 QDQMLHFRLMPD--PQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKAN 224 (383) Q Consensus 147 ~~~vih~r~~~~--~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (383) +++|+|+|.+.. ....+++|+||+.++..++..+.++.+++.++|+||++|+++++.++.+ ++++++++++.|++.+ T Consensus 152 ~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l-~~e~~~~~~~~~~~~~ 230 (403) T protein:vir:10 152 VDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEIL-NKKLRERKQEELQLDY 230 (403) T ss_pred ccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC-CHHHHHHHHHHHHHHh Confidence 899999996542 1234678999999999999999999999999999999999999998876 5688899999999999 Q ss_pred cC-cccCCceeccCCceeEeccc--ChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH-HHHHHHHHH Q lcl|Aclame:pro 225 TG-DNSGRLMVLPDGFDYTQLEM--KTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ-IKATYLANL 300 (383) Q Consensus 225 ~g-~n~g~~~vl~~g~~~~~l~~--~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-~~~~~~~tl 300 (383) +| .|+|+++++++|++|+++++ ++.|+|++ |.+++++++||++|||||++||... +++.|+ ...|+..|| T Consensus 231 ~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~-e~~~~~~~~Ia~~fgVPp~~lg~~~-----~sn~e~~~~~f~~~tl 304 (403) T protein:vir:10 231 NPSTGQSSVLILDGGMKAKPYSQISSFKDLDFK-EDIEGFNKSICLAFGVPQVLLDGGN-----NANIRPNIELFYYMTI 304 (403) T ss_pred CCcccCcceeecCCCceeEEecccCCHHHHHHH-HHHHHHHHHHHHHhCCCHHHcCCCC-----CcCHHHHHHHHHHHHH Confidence 88 68999999999999999985 57899975 9999999999999999999997432 334444 455667799 Q ss_pred HHHHHHHHHHHHhhcCCceeeeechhh--hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC--- Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAPDLELDIKDM--LDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN--- 375 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~~~~fd~~~l--l~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~--- 375 (383) .||+++|+++|+++| +.+++||++.+ ++.|.+++++++++++++|++|+||+|+++|++|++.+..+....+.+ T Consensus 305 ~P~~~~ie~~l~~~L-~~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~~ 383 (403) T protein:vir:10 305 IPMLNKLTSSLTFFF-GYKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPANVAG 383 (403) T ss_pred HHHHHHHHHHHHHhc-CceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCccccccccccccccc Confidence 999999999999988 66788998855 889999999999999999999999999999999997544322222221 Q ss_pred ---CCC---CCCCC Q lcl|Aclame:pro 376 ---ETK---GGDDK 383 (383) Q Consensus 376 ---~~~---gGd~~ 383 (383) +++ |||+. T Consensus 384 ~~~~~~~~e~~~~~ 397 (403) T protein:vir:10 384 SATGVSGQEGGRPK 397 (403) T ss_pred ccccCCCCcCCCCC Confidence 223 33333 No 59 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=2.9e-73 Score=418.24 Aligned_cols=368 Identities=16% Similarity=0.191 Sum_probs=283.3 Q ss_pred Ccccchhcccccccc-ccccccchhhh---hhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch----- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK-NMVYPSNPAFF---TTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA----- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~----- 71 (383) |+||++........+ ....++.+... ..+......+. ...++++++|++||++||++||++|+++++.. T Consensus 13 m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~~~ 90 (413) T protein:vir:96 13 LKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISDG--YTKLSDSPEVRMAVDCIADLVSNMTIQLMQNGETGDK 90 (413) T ss_pred CCccccCCCcchhhhhhccccccccccccchhhHhhhccch--hHHHhhchHHHHHHHHHHHhhccCceEEEEecCCCcc Confidence 777765321111000 01111111110 01111111111 13467899999999999999999999986432 Q ss_pred ------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc-----ceEEeecCcceeeeecCCceEEEEEEecCc Q lcl|Aclame:pro 72 ------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-----LEHIPNSDVQINYLPGNMGIVYTVLESNDR 140 (383) Q Consensus 72 ------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383) .++|+.+||++||+++||+.++.+++++||||++++++. .+++|++|.++.+..+.+...|.+ ...+ T Consensus 91 ~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~~~~y~~-~~~~- 168 (413) T protein:vir:96 91 RIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDDDLDYSI-TFDN- 168 (413) T ss_pred ccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCCeEEEEE-eecC- Confidence 345678999999999999999999999999999998753 478899998888877766544433 3333 Q ss_pred eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) Q Consensus 141 ~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (383) .++++++|||||+... ...+.+|.||+.++...+..+.++.++..++|+||++|+++++.++.+ ++++.+++++.| T Consensus 169 --~~~~~~evih~k~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l-~~e~~~~~~~~~ 244 (413) T protein:vir:96 169 --KEYDPSTLLHFVLNPS-IERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDS-DELSDEEGRENF 244 (413) T ss_pred --cEEchhhEEEEeccCC-CCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC-CHHHHHHHHHHH Confidence 3588999999996332 223568999999999999999999999999999999999999998876 567889999999 Q ss_pred HHHhcC-cccCCceeccCCc-eeEec-ccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTG-DNSGRLMVLPDGF-DYTQL-EMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYL 297 (383) Q Consensus 221 ~~~~~g-~n~g~~~vl~~g~-~~~~l-~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~ 297 (383) ++.++| .|+|+++++++|. ++..+ +++++|+|+ .|.+++++++||++|||||.+||.... +.++...++. T Consensus 245 ~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~-~e~~~~~~~~Ia~~fgVP~~~lg~~~~------~~~~~~~~~~ 317 (413) T protein:vir:96 245 EEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAI-NDAVTLDKKTVAGIFGVPAFLLGVGTY------NKDEFNNFIN 317 (413) T ss_pred HHHhcCccccCceeeecCCcccccccccCChhHHHH-HHHHHHHHHHHHHHhCCCHHHcCCCcc------hHHHHHHHHH Confidence 999988 6889999986554 55555 468899997 599999999999999999999985321 2344566777 Q ss_pred HHHHHHHHHHHHHHHhhcCCc--eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC Q lcl|Aclame:pro 298 ANLNSYVNPIVDELRLKMNAP--DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN 375 (383) Q Consensus 298 ~tl~p~~~~i~~~l~~~l~~~--~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~ 375 (383) .||.||+++||++|+++|+++ +++||.++++++|.+++++++++++++|++|+||+|+++|++|+|++|......+.. T Consensus 318 ~~l~P~~~~ie~~ln~~ll~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~~~~~n~~ 397 (413) T protein:vir:96 318 TKIMSIAQVIQQTYNKLIVEEDMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDLLVLENYL 397 (413) T ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccc Confidence 899999999999999999864 789999999999999999999999999999999999999999999999776665555 Q ss_pred CCCC-CCCC Q lcl|Aclame:pro 376 ETKG-GDDK 383 (383) Q Consensus 376 ~~~g-Gd~~ 383 (383) ++.- |+.| T Consensus 398 ~~~~~~~~~ 406 (413) T protein:vir:96 398 QQKDLVNQK 406 (413) T ss_pred chhhccccc Confidence 4431 2222 No 60 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=3.4e-73 Score=417.89 Aligned_cols=363 Identities=18% Similarity=0.195 Sum_probs=276.3 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHH-HHhhhHHHHHHHHHHHHhhccceeEeecch-------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSAL-SALQNTNVYSVINRIASDVSSAHFKTENTA-------- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------- 71 (383) ||||+++ +++ .......+ ..++.... ......++.. .+..+|+|++||++||++||++|++++... T Consensus 1 Mg~~~~f-~~k-~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g~~~~~ 75 (403) T protein:vir:80 1 MGLFNFF-RRK-TRSEPTNA--ISWFLTQE-AYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDNGDIRIK 75 (403) T ss_pred Ccccccc-ccc-ccccccch--hhhhcccc-cccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCCceeecC Confidence 9999854 322 21111111 11111111 1111122222 345689999999999999999999987432 Q ss_pred ---hhhhhhCCCccCCHHHHHHHHHHHHHhc--CCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceE Q lcl|Aclame:pro 72 ---TLNRLESPSSLIGRFSFWQGALMQLCLS--GNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPK 142 (383) Q Consensus 72 ---~~~l~~~PN~~~s~~~f~~~~~~~l~l~--G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383) .++|+.+|||+||+++||+.++.++++. ||||+++.++. .+++|++|..+.+..+.++..+++. . T Consensus 76 ~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~y~------~ 149 (403) T protein:vir:80 76 NELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQIWYQ------G 149 (403) T ss_pred ChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceEEEEe------e Confidence 3456679999999999999999999984 78999988753 5788899988887777666443321 1 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) ..+++++||||+... ....+.+|.||+.++..++....++++++.++|+||++|+++++.++.+.+ ++.+++++.|.+ T Consensus 150 ~~~~~~eiih~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~-~~~~~~~~~~~~ 227 (403) T protein:vir:80 150 KAYNYDEVLHFIVNP-DPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAE-LSSEEGRNAVFK 227 (403) T ss_pred cccchhhEEEEeccC-CCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCh-HHHHHHHHHHHH Confidence 358899999999532 333466899999999999999999999999999999999999999987655 556677777776 Q ss_pred HhcC-cccCCceeccCC-ceeEecc-cChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 223 ANTG-DNSGRLMVLPDG-FDYTQLE-MKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (383) Q Consensus 223 ~~~g-~n~g~~~vl~~g-~~~~~l~-~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~t 299 (383) .+.+ .++|++++++++ .++..+. ++++|+|+ .|.+++++.+||++|||||++||....+ .++...++..| T Consensus 228 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~-~e~~~~~~~~Ia~~fgVPp~~lg~~~~~------~~~~~~f~~~~ 300 (403) T protein:vir:80 228 KYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAI-HETVELDKRTVAGIFGVPAFLLGVGKYD------KDEYNNFINST 300 (403) T ss_pred HHhhhhhcCCeeeecccccccceeccCCHHHHHH-HHHHHHhHHHHHHHhCCCHHHcCCCCcc------HHHHHHHHHHH Confidence 6655 688999888655 3444443 57899997 4999999999999999999999853322 12345677889 Q ss_pred HHHHHHHHHHHHHhhcCCc---eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC- Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN- 375 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~~---~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~- 375 (383) |.|++++||++|+++|+.+ +++||.+.++++|.+++++++.+++++|+||+||+|+++|++|++++|......+.. T Consensus 301 l~P~~~~ie~~l~~kll~~~~~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n~~p 380 (403) T protein:vir:80 301 ILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILENYIP 380 (403) T ss_pred HHHHHHHHHHHHHHhccCCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccc Confidence 9999999999999999864 689999999999999999999999999999999999999999999998654444432 Q ss_pred --------CCCCCCCC Q lcl|Aclame:pro 376 --------ETKGGDDK 383 (383) Q Consensus 376 --------~~~gGd~~ 383 (383) ..||||+. T Consensus 381 l~~~~~~~~~k~ge~~ 396 (403) T protein:vir:80 381 LDKIGDQNKLKGGEKG 396 (403) T ss_pred hhhccchhhccCCCCC Confidence 23555433 No 61 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=2.7e-73 Score=418.42 Aligned_cols=354 Identities=16% Similarity=0.163 Sum_probs=279.4 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------TL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------~~ 73 (383) ||||+++|+++...... .. ......++.+.++++++|++||++||++||++|+++++.. .+ T Consensus 1 Mg~f~~lf~~~~~~~~~---------~~---~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ 68 (395) T protein:vir:95 1 MSILEKIFKTRKDITYM---------LD---LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYY 68 (395) T ss_pred CchhhhhhccCcccccc---------cc---chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHH Confidence 99999998775332110 11 1122346778899999999999999999999999987543 45 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEe Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHF 153 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~ 153 (383) +|+.+||++||+++||+.++.++++.|++|+++.+. ..++++++..+..........+.+.....+..+++++++|||+ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~ 147 (395) T protein:vir:95 69 KLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS-KELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYL 147 (395) T ss_pred HHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC-CCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEE Confidence 567799999999999999999999999988876543 4566666666555444444455555555666788999999999 Q ss_pred cccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCC-- Q lcl|Aclame:pro 154 RLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGR-- 231 (383) Q Consensus 154 r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~-- 231 (383) |+++.++ ..+|.||++++..++.... +.|.+++.++++|+.++...++++++++++.|++.+++.++++ T Consensus 148 ~~~~~~~--~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 218 (395) T protein:vir:95 148 KYNNNKV--THFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLA 218 (395) T ss_pred ccCCCCc--ccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcc Confidence 9876554 3579999999988876644 3467888899999999888889999999999999998876655 Q ss_pred ceeccCCceeEecccChhHH-----HHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 LMVLPDGFDYTQLEMKTDVF-----KALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-QIKATYLANLNSYVN 305 (383) Q Consensus 232 ~~vl~~g~~~~~l~~~~~~~-----~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~~~~~~~~tl~p~~~ 305 (383) ++++++|++|+++++++.++ |+ .|++++.+++||++|||||++||+. +++.| +...++..||.|+++ T Consensus 219 v~~l~~g~~~~~l~~~~~~~~~~~~q~-~e~~~~~~~~Ia~~f~VPp~~l~~~------~sn~e~~~~~~~~~~l~P~~~ 291 (395) T protein:vir:95 219 IAPLIEGFDYEELSNGGKNSNMPFSEL-SELMRDAIKNVALMIGIPPGLIYGE------TADLEKNTLVFEKFCLTPLLK 291 (395) T ss_pred eEEcCCCceeeeccccccccchhHHHH-HHHHHHHHHHHHHHhCCCHHHhcCc------ccCHHHHHHHHHHHHHHHHHH Confidence 44579999999999998775 65 5999999999999999999999742 23334 455566679999999 Q ss_pred HHHHHHHhhcCCc-----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCC--ccccccCCCC--- Q lcl|Aclame:pro 306 PIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPD--NLPEFKPLTN--- 375 (383) Q Consensus 306 ~i~~~l~~~l~~~-----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~--d~~~~~~~~~--- 375 (383) +||++|+++|+++ +++||++.++++|.+++++++++++++|++|+||+|+++|++|++++ |.+....+.. T Consensus 292 ~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~ 371 (395) T protein:vir:95 292 KIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKAN 371 (395) T ss_pred HHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccc Confidence 9999999999863 47899999999999999999999999999999999999999999887 4433333322 Q ss_pred ------------CCCCCCCC Q lcl|Aclame:pro 376 ------------ETKGGDDK 383 (383) Q Consensus 376 ------------~~~gGd~~ 383 (383) ..+|||+. T Consensus 372 ~~~~~~~~~~~~~~kgg~~~ 391 (395) T protein:vir:95 372 SGENDEKEKDENTLKGGDED 391 (395) T ss_pred ccccccCcccccccCCCCCC Confidence 23455444 No 62 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=2.7e-73 Score=418.42 Aligned_cols=354 Identities=16% Similarity=0.163 Sum_probs=279.4 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------TL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------~~ 73 (383) ||||+++|+++...... .. ......++.+.++++++|++||++||++||++|+++++.. .+ T Consensus 1 Mg~f~~lf~~~~~~~~~---------~~---~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ 68 (395) T protein:vir:10 1 MSILEKIFKTRKDITYM---------LD---LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYY 68 (395) T ss_pred CchhhhhhccCcccccc---------cc---chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHH Confidence 99999998775332110 11 1122346778899999999999999999999999987543 45 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEe Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHF 153 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~ 153 (383) +|+.+||++||+++||+.++.++++.|++|+++.+. ..++++++..+..........+.+.....+..+++++++|||+ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~ 147 (395) T protein:vir:10 69 KLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS-KELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYL 147 (395) T ss_pred HHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC-CCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEE Confidence 567799999999999999999999999988876543 4566666666555444444455555555666788999999999 Q ss_pred cccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCC-- Q lcl|Aclame:pro 154 RLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGR-- 231 (383) Q Consensus 154 r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~-- 231 (383) |+++.++ ..+|.||++++..++.... +.|.+++.++++|+.++...++++++++++.|++.+++.++++ T Consensus 148 ~~~~~~~--~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 218 (395) T protein:vir:10 148 KYNNNKV--THFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLA 218 (395) T ss_pred ccCCCCc--ccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcc Confidence 9876554 3579999999988876644 3467888899999999888889999999999999998876655 Q ss_pred ceeccCCceeEecccChhHH-----HHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 LMVLPDGFDYTQLEMKTDVF-----KALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-QIKATYLANLNSYVN 305 (383) Q Consensus 232 ~~vl~~g~~~~~l~~~~~~~-----~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~~~~~~~~tl~p~~~ 305 (383) ++++++|++|+++++++.++ |+ .|++++.+++||++|||||++||+. +++.| +...++..||.|+++ T Consensus 219 v~~l~~g~~~~~l~~~~~~~~~~~~q~-~e~~~~~~~~Ia~~f~VPp~~l~~~------~sn~e~~~~~~~~~~l~P~~~ 291 (395) T protein:vir:10 219 IAPLIEGFDYEELSNGGKNSNMPFSEL-SELMRDAIKNVALMIGIPPGLIYGE------TADLEKNTLVFEKFCLTPLLK 291 (395) T ss_pred eEEcCCCceeeeccccccccchhHHHH-HHHHHHHHHHHHHHhCCCHHHhcCc------ccCHHHHHHHHHHHHHHHHHH Confidence 44579999999999998775 65 5999999999999999999999742 23334 455566679999999 Q ss_pred HHHHHHHhhcCCc-----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCC--ccccccCCCC--- Q lcl|Aclame:pro 306 PIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPD--NLPEFKPLTN--- 375 (383) Q Consensus 306 ~i~~~l~~~l~~~-----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~--d~~~~~~~~~--- 375 (383) +||++|+++|+++ +++||++.++++|.+++++++++++++|++|+||+|+++|++|++++ |.+....+.. T Consensus 292 ~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~ 371 (395) T protein:vir:10 292 KIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKAN 371 (395) T ss_pred HHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccc Confidence 9999999999863 47899999999999999999999999999999999999999999887 4433333322 Q ss_pred ------------CCCCCCCC Q lcl|Aclame:pro 376 ------------ETKGGDDK 383 (383) Q Consensus 376 ------------~~~gGd~~ 383 (383) ..+|||+. T Consensus 372 ~~~~~~~~~~~~~~kgg~~~ 391 (395) T protein:vir:10 372 SGENDEKEKDENTLKGGDED 391 (395) T ss_pred ccccccCcccccccCCCCCC Confidence 23455444 No 63 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=2.7e-73 Score=418.42 Aligned_cols=354 Identities=16% Similarity=0.163 Sum_probs=279.4 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------TL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------~~ 73 (383) ||||+++|+++...... .. ......++.+.++++++|++||++||++||++|+++++.. .+ T Consensus 1 Mg~f~~lf~~~~~~~~~---------~~---~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~ 68 (395) T protein:vir:10 1 MSILEKIFKTRKDITYM---------LD---LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYY 68 (395) T ss_pred CchhhhhhccCcccccc---------cc---chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccchHHH Confidence 99999998775332110 11 1122346778899999999999999999999999987543 45 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEe Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHF 153 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~ 153 (383) +|+.+||++||+++||+.++.++++.|++|+++.+. ..++++++..+..........+.+.....+..+++++++|||+ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~ 147 (395) T protein:vir:10 69 KLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS-KELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYL 147 (395) T ss_pred HHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC-CCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEE Confidence 567799999999999999999999999988876543 4566666666555444444455555555666788999999999 Q ss_pred cccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCC-- Q lcl|Aclame:pro 154 RLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGR-- 231 (383) Q Consensus 154 r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~-- 231 (383) |+++.++ ..+|.||++++..++.... +.|.+++.++++|+.++...++++++++++.|++.+++.++++ T Consensus 148 ~~~~~~~--~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 218 (395) T protein:vir:10 148 KYNNNKV--THFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLA 218 (395) T ss_pred ccCCCCc--ccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcc Confidence 9876554 3579999999988876644 3467888899999999888889999999999999998876655 Q ss_pred ceeccCCceeEecccChhHH-----HHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 LMVLPDGFDYTQLEMKTDVF-----KALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-QIKATYLANLNSYVN 305 (383) Q Consensus 232 ~~vl~~g~~~~~l~~~~~~~-----~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~~~~~~~~tl~p~~~ 305 (383) ++++++|++|+++++++.++ |+ .|++++.+++||++|||||++||+. +++.| +...++..||.|+++ T Consensus 219 v~~l~~g~~~~~l~~~~~~~~~~~~q~-~e~~~~~~~~Ia~~f~VPp~~l~~~------~sn~e~~~~~~~~~~l~P~~~ 291 (395) T protein:vir:10 219 IAPLIEGFDYEELSNGGKNSNMPFSEL-SELMRDAIKNVALMIGIPPGLIYGE------TADLEKNTLVFEKFCLTPLLK 291 (395) T ss_pred eEEcCCCceeeeccccccccchhHHHH-HHHHHHHHHHHHHHhCCCHHHhcCc------ccCHHHHHHHHHHHHHHHHHH Confidence 44579999999999998775 65 5999999999999999999999742 23334 455566679999999 Q ss_pred HHHHHHHhhcCCc-----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCC--ccccccCCCC--- Q lcl|Aclame:pro 306 PIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPD--NLPEFKPLTN--- 375 (383) Q Consensus 306 ~i~~~l~~~l~~~-----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~--d~~~~~~~~~--- 375 (383) +||++|+++|+++ +++||++.++++|.+++++++++++++|++|+||+|+++|++|++++ |.+....+.. T Consensus 292 ~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~ 371 (395) T protein:vir:10 292 KIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKAN 371 (395) T ss_pred HHHHHHHHhhcChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccc Confidence 9999999999863 47899999999999999999999999999999999999999999887 4433333322 Q ss_pred ------------CCCCCCCC Q lcl|Aclame:pro 376 ------------ETKGGDDK 383 (383) Q Consensus 376 ------------~~~gGd~~ 383 (383) ..+|||+. T Consensus 372 ~~~~~~~~~~~~~~kgg~~~ 391 (395) T protein:vir:10 372 SGENDEKEKDENTLKGGDED 391 (395) T ss_pred ccccccCcccccccCCCCCC Confidence 23455444 No 64 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=1.8e-72 Score=413.85 Aligned_cols=380 Identities=14% Similarity=0.144 Sum_probs=283.3 Q ss_pred Ccccch--hcc--------cccccc-c----cccccchhhhhhhcc--CcccccccHHHHhhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MGLLTP--KNF--------SKRNAK-N----MVYPSNPAFFTTTVG--GMQLSYVSALSALQNTNVYSVINRIASDVSSA 63 (383) Q Consensus 1 Mg~~~~--~~~--------~~~~~~-~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 63 (383) .=||+. ..+ +++.+. . ..++....+...+.. ......++...++++++|++||++||++||++ T Consensus 62 ~~~~~~~~~~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsL 141 (945) T protein:vir:10 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) T ss_pred eeeehhhhHHHhhcccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccC Confidence 111211 000 000000 0 000000000000000 00112256788999999999999999999999 Q ss_pred eeEeecc-----------------hhhhhhhCCCccCCHHH----HHHHHHHHHHhcCCceEEEEecc----ceEEeecC Q lcl|Aclame:pro 64 HFKTENT-----------------ATLNRLESPSSLIGRFS----FWQGALMQLCLSGNDYIPLVGQN----LEHIPNSD 118 (383) Q Consensus 64 ~~~v~~~-----------------~~~~l~~~PN~~~s~~~----f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~ 118 (383) |+++++. +...|+.+||++||+++ |++.++.+++++||+|+++.++. .+++|++| T Consensus 142 PlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdP 221 (945) T protein:vir:10 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) T ss_pred ceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECC Confidence 9998642 34567889999999998 66678899999999999998753 47888999 Q ss_pred cceeeeecCCc-eEE-EEEEecCceEEEEchhheE-EecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHh-cc Q lcl|Aclame:pro 119 VQINYLPGNMG-IVY-TVLESNDRPKMVLRQDQML-HFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAME-NQ 194 (383) Q Consensus 119 ~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~vi-h~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~-ng 194 (383) .++.+..+.++ ..+ ++...++.....++++++| |+|+++.++....+|+||+.+++.++..+.++++++.++|. || T Consensus 222 s~Vti~~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNG 301 (945) T protein:vir:10 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) T ss_pred cceEEEEcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 88877665444 333 3344456666778888866 56666666655567999999999999999999999999995 78 Q ss_pred CCcceEEEEcCc---------CCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 INPAGKLTISNY---------LSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQI 265 (383) Q Consensus 195 ~~p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~I 265 (383) ++|+++++.++. ..++++.+++++.|++.++|.++|+++++++|++|+++++++.|+|++ |++++++++| T Consensus 302 a~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfL-Esrkfs~eeI 380 (945) T protein:vir:10 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFK-ELAEFVARKI 380 (945) T ss_pred CccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHH-HHHHHHHHHH Confidence 999999987632 346788999999999999998889999999999999999999999975 9999999999 Q ss_pred HHHhcCCHHHhccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC----ceeeeechhhhccCHHHHHHHHH Q lcl|Aclame:pro 266 SKAFGVPSDILGGGTSTESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNA----PDLELDIKDMLDVDDSILINQVS 340 (383) Q Consensus 266 a~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~----~~~~fd~~~ll~~d~~~~~~~~~ 340 (383) |++|||||++||...++ ++++.|++.. ++..||.|++++||+++|++|+. .+++|+++.+...|.++++++++ T Consensus 381 ArAFGVPP~lLG~~e~s--t~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg~~i~fdFd~ldl~D~ksraEal~ 458 (945) T protein:vir:10 381 CAVYQVSPQDVGILEGS--NKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKERDWWNIIQ 458 (945) T ss_pred HHHhCCCHHHcccCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeEEEecchhccCHHHHHHHHH Confidence 99999999999976554 3445555554 55679999999999999999863 45777777777789999999999 Q ss_pred HHHhCCCcCHHHHHHHhCCCCccCCccccccCC-------------------------CCCC-CCC-CCC Q lcl|Aclame:pro 341 NLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPL-------------------------TNET-KGG-DDK 383 (383) Q Consensus 341 ~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~-------------------------~~~~-~gG-d~~ 383 (383) +++++|+||+||+|+++|++|+++||.+..... .++. +|| +++ T Consensus 459 kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dE 528 (945) T protein:vir:10 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDE 528 (945) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCCCC Confidence 999999999999999999999999987543211 0111 122 222 No 65 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=3.8e-73 Score=417.61 Aligned_cols=361 Identities=21% Similarity=0.297 Sum_probs=291.2 Q ss_pred Ccccchhccccccccccc----cccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMV----YPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRL 76 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~ 76 (383) ||||++++..+..+.... ...++.++..+. ....++.+.++++++|++||++||++||++|++++++..+.|+ T Consensus 1 Mglf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~~~l~ 77 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQDSFFDITDPEFLDALN---GSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQLQGIV 77 (384) T ss_pred CccccccccCcccccccchhhccccchhhccccc---CCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchhhhhh Confidence 999998766554433221 112222222222 2345788999999999999999999999999999999999999 Q ss_pred hCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC-CceEEEEEEec---CceEEEEchh Q lcl|Aclame:pro 77 ESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN-MGIVYTVLESN---DRPKMVLRQD 148 (383) Q Consensus 77 ~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~ 148 (383) .+|||+||+++|++.++.+++++||||++++++. .+++|++|.++.+..+. .+..+|.+... ++..+.++++ T Consensus 78 ~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 157 (384) T protein:vir:49 78 DNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPRIPPKQHVPQG 157 (384) T ss_pred hccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccccceeEecCc Confidence 9999999999999999999999999999998753 47888888877765433 34444444433 2456789999 Q ss_pred heEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 149 QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDN 228 (383) Q Consensus 149 ~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n 228 (383) +|||+|+++.++ .++|+||+.++...+..+.++.+++.++|+||++|+++++.++...++++. ++..+...++.| T Consensus 158 eVih~~~~~~~~--~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~---~~~~~~~~~~~n 232 (384) T protein:vir:49 158 DILHFRLLSVDG--GLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKT---KQSRSRQAMKQM 232 (384) T ss_pred cEEEecCCCCCC--ceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHH---HHHHHHHhcccC Confidence 999999876554 468999999999999999999999999999999999999999887654433 233344445578 Q ss_pred cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 229 SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LANLNSYVNPI 307 (383) Q Consensus 229 ~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~-~~tl~p~~~~i 307 (383) +|+++++++|++|+++++++.++|+ .|.+++.+++||++|||||++||.......+.++.++....+ ..+|.|+++.| T Consensus 233 ~~~~~vl~~g~~~~~l~~~~~d~q~-~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i 311 (384) T protein:vir:49 233 QGGPLVLDDLEDFTPLEIKSNVAQL-LSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSEL 311 (384) T ss_pred CccceecCCCceEEEccCChhhHHH-HHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999999999999999999999997 499999999999999999999998655555555556555444 45789999999 Q ss_pred HHHHHhhcC----------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccccc Q lcl|Aclame:pro 308 VDELRLKMN----------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK 371 (383) Q Consensus 308 ~~~l~~~l~----------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~ 371 (383) +++|++++. +.+++|+++.++++|..++.++...+.+.|+++ ||+|+.+|++|+++||..... T Consensus 312 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 312 SKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred HHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCCCCCCCC Confidence 999998873 236889999999999999999999999999886 999999999988877654444 No 66 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=1.1e-72 Score=415.14 Aligned_cols=355 Identities=14% Similarity=0.143 Sum_probs=272.2 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------TL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------~~ 73 (383) ||||+++|+++...... .+. .....++.+.++++++|++||++||++||++|+++++.. .. T Consensus 1 Mg~f~~~f~~~~~~~~~---~~~---------~~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~l~~ 68 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWM---YDL---------EFLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTKEKGTLYY 68 (385) T ss_pred CchhhhhhccCcccccc---cch---------hhhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCccccchHHH Confidence 99999998765432211 111 112235678899999999999999999999999997543 23 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEe Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHF 153 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~ 153 (383) +|+.+||++||+++||+.++.+++++||||+++.+....+....+.............+............+++++|||+ T Consensus 69 lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiih~ 148 (385) T protein:vir:95 69 LLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEGHFFVADDFEKEDELGLYSHRFTNVLVNDFEFKRVFTMDDVIYL 148 (385) T ss_pred HHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCCCeeeccccccccccccccccceeeeecccceeeeeccccEEEe Confidence 45578999999999999999999999999998876643322222222211111122233344444556678999999999 Q ss_pred cccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcC-cCCCHHHHHHHHHHHHHHhcCc-c-cC Q lcl|Aclame:pro 154 RLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISN-YLSDGKDLESAREEFEKANTGD-N-SG 230 (383) Q Consensus 154 r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~-n-~g 230 (383) |+++.++ ..+|.||++.+..++....++.. +++.|+++++.+. ...++++.+++++.|++.++|. + .+ T Consensus 149 ~~~~~~~--~~~G~s~~~~~~~~i~~~~~~~~-------~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~ 219 (385) T protein:vir:95 149 KYNNQKL--DAFSLGLFEDYGEIFGRMIDLQM-------LNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQNNTI 219 (385) T ss_pred cCCCCCc--ccccchHHHHHHHHHHHHHHHHH-------hcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhhhcCC Confidence 9876554 35799999999998876655432 2344788888864 4457888999999999999884 3 44 Q ss_pred CceeccCCceeEeccc------ChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 231 RLMVLPDGFDYTQLEM------KTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-QIKATYLANLNSY 303 (383) Q Consensus 231 ~~~vl~~g~~~~~l~~------~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~~~~~~~~tl~p~ 303 (383) +++++++|++|+++++ ++.|+|+ .|++++++++||++|||||++|++ ++++.| +...++..||.|+ T Consensus 220 ~i~~l~~g~~~~~l~~~~~~~~s~~d~~~-~e~~~~~~~~Ia~~fgVpp~~l~~------~~sn~e~~~~~~~~~~l~P~ 292 (385) T protein:vir:95 220 AVVPLTEGLAYEEHSNRGAAQSAQQFSEL-NELKKTVLTDVARMIGVPPSLVLG------EMADLEKTIESYLQFCINPL 292 (385) T ss_pred ceEEcCCCceeEeecccccccCCHHHHHH-HHHHHHHHHHHHHHhCCCHHHhcC------CCcCHHHHHHHHHHHHHHHH Confidence 5888999999999985 5678897 599999999999999999999963 233334 4556667799999 Q ss_pred HHHHHHHHHhhcCCc------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCc--cCCccccccCCC- Q lcl|Aclame:pro 304 VNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGF--LPDNLPEFKPLT- 374 (383) Q Consensus 304 ~~~i~~~l~~~l~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~--~~~d~~~~~~~~- 374 (383) +++||++|+++|+++ +++||+++++++|.+++++++++++++|++|+||+|+++|++|+ +++|.+....+. T Consensus 293 ~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n~~ 372 (385) T protein:vir:95 293 LRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKNLQ 372 (385) T ss_pred HHHHHHHHHhhcCChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccce Confidence 999999999999764 68999999999999999999999999999999999999999999 566766555444 Q ss_pred --CCCCCCCCC Q lcl|Aclame:pro 375 --NETKGGDDK 383 (383) Q Consensus 375 --~~~~gGd~~ 383 (383) ..+||||+. T Consensus 373 ~~~~~kgge~~ 383 (385) T protein:vir:95 373 SADAFKGGESN 383 (385) T ss_pred ecccccCCCCC Confidence 345788777 No 67 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=1e-69 Score=398.77 Aligned_cols=359 Identities=15% Similarity=0.116 Sum_probs=260.2 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------TL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------~~ 73 (383) |||+++++....+........+..++ .....++.+.++++++|++||++||+++|++|+++++.. .. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~~~~~~~~~ 74 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDTVWC------SIPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGEEVRKKNWY 74 (395) T ss_pred CchHHHHHhhhcccccccccccchhh------ccccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCccccchHHH Confidence 99999986665444333332222221 122235678899999999999999999999999997643 44 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEec-CceEEEEchhheEE Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESN-DRPKMVLRQDQMLH 152 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vih 152 (383) +|+.+|||+||+++||+.++.+++++||||+++.++.+ +++..+...... .....|.....+ ....+.|++++||| T Consensus 75 lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~evih 151 (395) T protein:vir:40 75 MFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI--YVADSFTKNDKS-LYENTYTEVTLKDLTLKKEFKESEVLH 151 (395) T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce--eecCCccccccc-cccceeeeeeecCceeeeeeccccEEE Confidence 57789999999999999999999999999999887764 333333322211 122233322222 23356799999999 Q ss_pred ecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC--cccC Q lcl|Aclame:pro 153 FRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG--DNSG 230 (383) Q Consensus 153 ~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~n~g 230 (383) +|+.+..... .+.+.+..+...+.... ....+.|+.++.+++..... .++++.+++++.|++.+++ .+++ T Consensus 152 ~r~~~~~~~~--~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (395) T protein:vir:40 152 LTLNNESIKS--IIDGFYLLYGDLLTAAV-----NKYKKLNSRKIIVKLKAMFG-QTPEAEEKLRLMLSERMKKFLAEGD 223 (395) T ss_pred eecCCCCccc--cchhHHHHHHHHHHHHH-----HHHHhcCCCCceEEEecccC-CCHHHHHHHHHHHHHHHHHhhccCC Confidence 9975543322 23333343333332221 22334455555555544444 4668889999999999877 4677 Q ss_pred CceeccCCceeEecccChhHHHHHHHHHHHH---HHHHHHHhcCCHHHhccccccccchhHHH-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 RLMVLPDGFDYTQLEMKTDVFKALADNSAYS---ADQISKAFGVPSDILGGGTSTESQHSNID-QIKATYLANLNSYVNP 306 (383) Q Consensus 231 ~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~---~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-~~~~~~~~tl~p~~~~ 306 (383) +++++++|++|+++++++.++|++ |++++. .++||++|||||++||+. +++.| +...++..||.||+++ T Consensus 224 ~~~vl~~g~~~~~l~~~~~d~q~~-e~~~~~~~~~~~Ia~~fgVPp~~l~~~------~sn~e~~~~~f~~~~L~P~~~~ 296 (395) T protein:vir:40 224 SALPVEDGMEIDELAGDSKIAESR-DIKKMIDDVFEMVANSFNIPLGLAKGD------TVGLSEQVNSFLMFSINPIAEM 296 (395) T ss_pred ceeecCCCceEEeccCChhhhhHH-HHHHHHHHHHHHHHHHhCCCHHHhcCC------CcCHHHHHHHHHHHHHHHHHHH Confidence 899999999999999999999975 888776 479999999999999742 23334 4556667799999999 Q ss_pred HHHHHHhhcCCc-------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC--CccccccCCC--- Q lcl|Aclame:pro 307 IVDELRLKMNAP-------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP--DNLPEFKPLT--- 374 (383) Q Consensus 307 i~~~l~~~l~~~-------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~--~d~~~~~~~~--- 374 (383) ||++|+++|+++ +++||+++++++|.+++++++.+++++|++|+||+|+++|++|+++ +|.+....+. T Consensus 297 ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~ 376 (395) T protein:vir:40 297 FTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPL 376 (395) T ss_pred HHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeeccccccc Confidence 999999999753 6999999999999999999999999999999999999999999965 5544333332 Q ss_pred ----CCCCCCCCC Q lcl|Aclame:pro 375 ----NETKGGDDK 383 (383) Q Consensus 375 ----~~~~gGd~~ 383 (383) ...||||+. T Consensus 377 ~~~~~~~kgge~~ 389 (395) T protein:vir:40 377 GENEEDLKGGDIN 389 (395) T ss_pred cccccccCCCCCC Confidence 245677665 No 68 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=1.4e-69 Score=397.99 Aligned_cols=357 Identities=13% Similarity=0.108 Sum_probs=258.1 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--------h Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--------T 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--------~ 72 (383) |||||++++++....... ......+.++.+.++++++|++||++||++||++|+++++.. . T Consensus 1 Mgl~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~~~~~~ 69 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSDD-----------DSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLTENQKDW 69 (395) T ss_pred CcchhhhcCCCCcccccc-----------ccccchhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCccccccchH Confidence 999999877653322111 011223346678899999999999999999999999997643 2 Q ss_pred -hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheE Q lcl|Aclame:pro 73 -LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQML 151 (383) Q Consensus 73 -~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 151 (383) .+|+.+|||+||+++||+.++.+++++||||+++.++... ++++........ ....++.+...+....+.+++++|+ T Consensus 70 ~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~dvi 147 (395) T protein:vir:96 70 LYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGI-YVADAFTQDKKL-SGNKFKVSRVQGQTYEKIFTFDQVI 147 (395) T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCce-ecCCcccccccc-ccceeeeeeeccceeeeEeccCceE Confidence 3455799999999999999999999999999998876532 233222221111 1112222233333446789999999 Q ss_pred EecccCccccCccccCcHHHHHH----HHHHH--HHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 152 HFRLMPDPQYRYLIGRSPLESLQ----NALNL--DDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 152 h~r~~~~~~~~~~~G~spi~~~~----~~i~~--~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) |+|+.+.+.... +.+++.... ..+.. ...+.++..+.+.+++.|.+++..++... .+..+++|++.++ T Consensus 148 h~k~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 221 (395) T protein:vir:96 148 YLKNDNSDLMLK--VESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQ----PKSDKDFFKRTIE 221 (395) T ss_pred EecccCCccccc--cccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhh----HHHHHHHHHHHHH Confidence 999766554332 333333332 22222 23345788899999999999988776543 3445566666655 Q ss_pred Ccc--cCCceeccCCceeEecccChhHHHHHHHHHHHH------HHHHHHHhcCCHHHhccccccccchhHHHH-HHHHH Q lcl|Aclame:pro 226 GDN--SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYS------ADQISKAFGVPSDILGGGTSTESQHSNIDQ-IKATY 296 (383) Q Consensus 226 g~n--~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~------~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-~~~~~ 296 (383) +.+ .++++++++|++|+++++++.++|++ |.+++. +++||++|||||++||. ++++.|+ ...++ T Consensus 222 ~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~-e~~~~~~~~~~~~~eIa~~fgVPp~~l~~------~~sn~e~~~~~f~ 294 (395) T protein:vir:96 222 KIRTESVVGIPVTANTNYEEYGSKNTGSVKS-YVDDIKKLKDQYMAEFAEMLGIPISLLHG------DIADNQKNYELLL 294 (395) T ss_pred HhhcCCcceEEccCCceeEecccChhhhhhh-hHHHHHHHHHHHHHHHHHHhCCCHHHhcC------CCccHHHHHHHHH Confidence 533 34577899999999999999999864 666654 58999999999999973 2334444 45666 Q ss_pred HHHHHHHHHHHHHHHHhhcCCc-----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC--Ccccc Q lcl|Aclame:pro 297 LANLNSYVNPIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP--DNLPE 369 (383) Q Consensus 297 ~~tl~p~~~~i~~~l~~~l~~~-----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~--~d~~~ 369 (383) ..||.||+++||++|+++|+++ +++|+++.++++|.+++++++++++++|++|+||+|+++|++|+++ +|... T Consensus 295 ~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~~ 374 (395) T protein:vir:96 295 EGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKVLY 374 (395) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee Confidence 7799999999999999999863 4679999999999999999999999999999999999999999977 55544 Q ss_pred ccCCCCCC--CCCCCC Q lcl|Aclame:pro 370 FKPLTNET--KGGDDK 383 (383) Q Consensus 370 ~~~~~~~~--~gGd~~ 383 (383) ...+..++ +|||+. T Consensus 375 ~~~N~~~~~~~gge~~ 390 (395) T protein:vir:96 375 MTKNYESVLERGGEVD 390 (395) T ss_pred ecccceechhccCCCC Confidence 44444444 678666 No 69 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=2.3e-69 Score=396.87 Aligned_cols=361 Identities=14% Similarity=0.120 Sum_probs=267.3 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--------- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--------- 71 (383) ||||+++++++...... . ..+...+.++.+.++++++|++||++||++||++|+++++.. T Consensus 1 MGlf~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~~~~~~ 69 (395) T protein:vir:98 1 MGILDFFSFKKSGTLSD----D-------DSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLTENQKDW 69 (395) T ss_pred CcchhhhcCCCcccccc----c-------ccchhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcccccchH Confidence 99999986554221111 0 011222345677889999999999999999999999987643 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQML 151 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 151 (383) .++|+.+|||+||+++||+.++.+++++||||+++.++...+.+......... .....+.+........+++++++|| T Consensus 70 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~evi 147 (395) T protein:vir:98 70 LYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIYVADSFTQDKKI--SGSQFKVSRVQGQTYEKTFTFDQVI 147 (395) T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCceecCCcccccccc--cCcccceeeecCceeeeEecCccEE Confidence 23566799999999999999999999999999999887644333222222111 1122223333333445789999999 Q ss_pred EecccCccccCccccCcHHHHHHHHHHHHH--HHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcc- Q lcl|Aclame:pro 152 HFRLMPDPQYRYLIGRSPLESLQNALNLDD--KASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDN- 228 (383) Q Consensus 152 h~r~~~~~~~~~~~G~spi~~~~~~i~~~~--~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n- 228 (383) |+|+.+.+.... +.+++.....++.... .......+++.++..+.+++.......++++.+..++.+++.+++.+ T Consensus 148 h~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (395) T protein:vir:98 148 YLKNDNSDLMSK--VESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEKIRT 225 (395) T ss_pred EecCCCCCcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhhhhc Confidence 999876665443 4444555555444333 33445567788888888888777766677777888899998887743 Q ss_pred -cCCceeccCCceeEecccC------hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH-HHHHHHHHH Q lcl|Aclame:pro 229 -SGRLMVLPDGFDYTQLEMK------TDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ-IKATYLANL 300 (383) Q Consensus 229 -~g~~~vl~~g~~~~~l~~~------~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-~~~~~~~tl 300 (383) .++++++++|++|++++++ +.++|+ .+.+++++++||++|||||++||.. +++.|+ ...++..|| T Consensus 226 ~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~-~e~~~~~~~~Ia~~fgVP~~~l~~~------~sn~e~~~~~f~~~tl 298 (395) T protein:vir:98 226 ESVVGIPVTANTNYEEYGSKNTGAVKSYVDDI-KKLKDQYMAEFAEMLGIPISLLHGD------IADNQKNYELLLEGPI 298 (395) T ss_pred CCcceeecCCCceeEecccccccccChhHHHH-HHHHHHHHHHHHHHhCCCHHHhcCC------cccHHHHHHHHHHHHH Confidence 3457789999999999854 556675 5999999999999999999999732 334444 456667799 Q ss_pred HHHHHHHHHHHHhhcCCc-----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC--CccccccCC Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP--DNLPEFKPL 373 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~-----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~--~d~~~~~~~ 373 (383) .||+++||++|+++|+++ +++||++.++++|.+++++++++++++|++|+||+|+++|++|+++ +|......+ T Consensus 299 ~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~~~~~n 378 (395) T protein:vir:98 299 ESLITNIVDGLEYAIFDKSETLQGSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKN 378 (395) T ss_pred HHHHHHHHHHHHHhcCChhhhcCcceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccc Confidence 999999999999999864 4679999999999999999999999999999999999999999987 555555555 Q ss_pred CCCC--CCCCCC Q lcl|Aclame:pro 374 TNET--KGGDDK 383 (383) Q Consensus 374 ~~~~--~gGd~~ 383 (383) ..++ +|||+. T Consensus 379 ~~~~~~~gge~~ 390 (395) T protein:vir:98 379 YESVLERGGEVD 390 (395) T ss_pred ceecccccCCCC Confidence 4454 477544 No 70 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=2e-68 Score=391.76 Aligned_cols=350 Identities=15% Similarity=0.147 Sum_probs=255.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-------hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-------TL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-------~~ 73 (383) ||||+++|+++...... .+ ......++.+.++++++|++||++||+++|++|+++++.. .+ T Consensus 1 Mg~f~~l~~~~~~~~~~---~~---------~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~l~~ 68 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWM---WD---------LDFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGETSVRDKLYY 68 (376) T ss_pred CchhhhhhccCCccccc---cc---------hhhccccchhhhhhhHHHHHHHHHHHHhhcccceeeccccccccchHHH Confidence 99999998765332211 11 0112236778899999999999999999999999997433 34 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc----eEEeecCcceeeeecCCceEEEEEEecCceEEEEchhh Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL----EHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQ 149 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (383) +|+.+||++||+++||+.++.++++.||+|+++.++.. .+++..+....... .+.+..........+++++ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~e 143 (376) T protein:vir:78 69 KLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDV-----FEGVTVKDYRYNRNFSMDD 143 (376) T ss_pred HHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeee-----eeeeeeecceeeeeecccc Confidence 46679999999999999999999999999999987553 34444444332221 2222333334456799999 Q ss_pred eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHH-HHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCc- Q lcl|Aclame:pro 150 MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMS-AMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGD- 227 (383) Q Consensus 150 vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~-~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 227 (383) |+|+|+...+... .+.++++.+...+. ..... .+.++.++.++++.+ ...++++.+++++.|++.++|. T Consensus 144 vih~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~g~~ 214 (376) T protein:vir:78 144 VIFLEYGNERLSA--FTDGMFEDYGELFG------KMIRAQMRNFQIRGAVNFKMA-GVADKDKQTKLQEYIDKVYASFN 214 (376) T ss_pred EEEeccCCCCchh--hhhHHHHHHHHHHH------HHHHHHHhcCCCceeEEEccC-CCCCHHHHHHHHHHHHHHhcccc Confidence 9999976544321 22223333322222 11222 334444444444433 4457788899999999999884 Q ss_pred -ccCCceeccCCceeEecccChhHH-----HHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH-HHHHHHHHH Q lcl|Aclame:pro 228 -NSGRLMVLPDGFDYTQLEMKTDVF-----KALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ-IKATYLANL 300 (383) Q Consensus 228 -n~g~~~vl~~g~~~~~l~~~~~~~-----~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-~~~~~~~tl 300 (383) +.++++++++|++|+++++++.++ |+ .|++++++++||++|||||++||+. +++.|+ ...++..|| T Consensus 215 ~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~-~e~~~~~~~~Ia~~fgVPp~~l~~~------~s~~e~~~~~f~~~~l 287 (376) T protein:vir:78 215 NNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEV-KKLRKEMIDYVASILGIPSSLLHGD------MADLSNNMKAYMEYCI 287 (376) T ss_pred ccCcceEEcCCCceEEeeccCccccchhHHHH-HHHHHHHHHHHHHHhCCCHHHhCCC------CCCHHHHHHHHHHHHH Confidence 334477899999999999998765 75 5999999999999999999999742 333444 456667899 Q ss_pred HHHHHHHHHHHHhhcCCc---eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc--cccccCCCC Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN--LPEFKPLTN 375 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~---~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d--~~~~~~~~~ 375 (383) .|++++||++++++|+++ .++|+++.+++.|.+++++++++++++|++|+||+|+++|++|+++++ ......+.. T Consensus 288 ~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~~ 367 (376) T protein:vir:78 288 DPLTKKLEDELNAKLFTFSEFLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELDKYLITKNYQ 367 (376) T ss_pred HHHHHHHHHHHHhhhCCcccceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccCce Confidence 999999999999999875 578999999999999999999999999999999999999999999884 445455555 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 376 ETKGGDDK 383 (383) Q Consensus 376 ~~~gGd~~ 383 (383) +++.|+|. T Consensus 368 ~~~~~~e~ 375 (376) T protein:vir:78 368 SADEGGED 375 (376) T ss_pred ehhccccC Confidence 55544444 No 71 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=9.7e-68 Score=387.97 Aligned_cols=379 Identities=12% Similarity=0.086 Sum_probs=281.9 Q ss_pred Ccccchhcccccccc-------------------------------ccc--cccchhhhhhhccCcc--ccccc------ Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK-------------------------------NMV--YPSNPAFFTTTVGGMQ--LSYVS------ 39 (383) Q Consensus 1 Mg~~~~~~~~~~~~~-------------------------------~~~--~~~~~~~~~~~~~~~~--~~~~~------ 39 (383) ||||+++..-.+... ..+ ++... ...+..+.. .+..+ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~--~~~~~~~~~~r~~~~~~~~l~~ 82 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIG--SMSANPGFKTKPSIRNNQDLHG 82 (551) T ss_pred hhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeeccccc--ceecCcccccCccccChhHHHH Confidence 999998763111000 000 11100 011111111 01111 Q ss_pred -HHHHhhhHHHHHHHHHHHHhhccc-----------eeEee--cc-------------hhhhhhhCCCcc-----CCHHH Q lcl|Aclame:pro 40 -ALSALQNTNVYSVINRIASDVSSA-----------HFKTE--NT-------------ATLNRLESPSSL-----IGRFS 87 (383) Q Consensus 40 -~~~~~~~~~v~~~i~~ia~~ia~~-----------~~~v~--~~-------------~~~~l~~~PN~~-----~s~~~ 87 (383) .+.+..+|+|++||+.||++||++ ++.+. +. ....++.+||++ +|+.+ T Consensus 83 ~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~ 162 (551) T protein:vir:80 83 VLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSS 162 (551) T ss_pred HHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHH Confidence 123456799999999999999974 44432 11 123467899987 48899 Q ss_pred HHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCce-----EEEEEEecCceEEEEchhheEEecccCc Q lcl|Aclame:pro 88 FWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGI-----VYTVLESNDRPKMVLRQDQMLHFRLMPD 158 (383) Q Consensus 88 f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vih~r~~~~ 158 (383) |+++++.+++++||+|++++++. .+++|++|.++.+..+..+. .+++...++.....|++++|||+|+.+. T Consensus 163 f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~ 242 (551) T protein:vir:80 163 FVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPR 242 (551) T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcccceEEecccCC Confidence 99999999999999999998753 56888999888876655542 3455566677778899999999996543 Q ss_pred c-ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCc-CCCHHHHHHHHHHHHHHhcC-cccCCceec Q lcl|Aclame:pro 159 P-QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNY-LSDGKDLESAREEFEKANTG-DNSGRLMVL 235 (383) Q Consensus 159 ~-~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl 235 (383) + ...+.+|+||+.++..++..+.++.+++.++|+||++|+++|+.++. ..++++.+++++.|++.++| .|+|+++++ T Consensus 243 ~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl 322 (551) T protein:vir:80 243 SDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVV 322 (551) T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccc Confidence 2 34456899999999999999999999999999999999999998754 34778999999999999988 689997665 Q ss_pred -cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcccccc--------ccchhHHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 236 -PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTST--------ESQHSNIDQIKA-TYLANLNSYVN 305 (383) Q Consensus 236 -~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~--------~~~~~~~e~~~~-~~~~tl~p~~~ 305 (383) ++|++|+++++++.|+|++ |++++.+++||++|||||++||....+ +.++++.|++.. ++..||.||++ T Consensus 323 ~~~g~~~~~l~~~~~D~qfl-e~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~ 401 (551) T protein:vir:80 323 SAEDVKFVNMTPSARDMEFE-KWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLG 401 (551) T ss_pred cCCCceEEEccCChhHHHHH-HHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHH Confidence 6899999999999999975 999999999999999999999964432 335667776664 55679999999 Q ss_pred HHHHHHHhhcCC---ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-ccCCccccccCCCCCCC--- Q lcl|Aclame:pro 306 PIVDELRLKMNA---PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSG-FLPDNLPEFKPLTNETK--- 378 (383) Q Consensus 306 ~i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p-~~~~d~~~~~~~~~~~~--- 378 (383) .||++|+++|+. ..++|+++.+...+..++++++. ++.+|+||+||+|+++|++| +++||.+.......+.. T Consensus 402 ~ie~~ln~~L~~~~~~~~~f~f~~~~~~~~~~~~~~~~-~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~ 480 (551) T protein:vir:80 402 FIEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKILA-EKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLM 480 (551) T ss_pred HHHHHHHhhhccccCCceEEEeeccChhhHHHHHHHHH-HHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccc Confidence 999999999975 46788888887888888877664 67789999999999999998 68888765333322110 Q ss_pred ---CCCCC Q lcl|Aclame:pro 379 ---GGDDK 383 (383) Q Consensus 379 ---gGd~~ 383 (383) ..+++ T Consensus 481 ~~~~~~~~ 488 (551) T protein:vir:80 481 QQEQFEHE 488 (551) T ss_pred cccCcchh Confidence 00000 No 72 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=1.1e-67 Score=387.61 Aligned_cols=314 Identities=17% Similarity=0.209 Sum_probs=256.9 Q ss_pred hccceeEeecc------hhh-hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecC- Q lcl|Aclame:pro 60 VSSAHFKTENT------ATL-NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGN- 127 (383) Q Consensus 60 ia~~~~~v~~~------~~~-~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~- 127 (383) ||+||+++++. +.. +|+.+||++||+++||+.++.+++++||||++++++. .+++|+++..+.+..+. T Consensus 1 ia~lp~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~~ 80 (348) T protein:vir:93 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (348) T ss_pred CcccceEeEecCcCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeCC Confidence 99999999653 333 4556999999999999999999999999999998753 46777777777665444 Q ss_pred CceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC Q lcl|Aclame:pro 128 MGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL 207 (383) Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~ 207 (383) ++..+|.+...++..+.|++++|||+|+++.. ++++|+||+.++..++..+.++.++.. ..++..++++++.++. T Consensus 81 ~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~--~~~~G~s~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~- 155 (348) T protein:vir:93 81 SRELYYSIHAATGNKLIVHNMDMLHFKHIVAS--NMVQGISPIDVLKNTTDFDNAVRTFNL--TEMQKPDSFMLKYGSN- 155 (348) T ss_pred CcEEEEEEEcCCCeEEEEccccEEEecCCCCC--CceeeccHHHHHHHHHHHHHHHHHHHH--HhcCCCceeEEecCCC- Confidence 34555555666667788999999999976543 367899999999999999999988863 3344445566665554 Q ss_pred CCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchh Q lcl|Aclame:pro 208 SDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHS 287 (383) Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~ 287 (383) .++++++++++.|++.+. |+|+++++++|++|++++++++|+|+ .|++++++++||++|||||.+||....+ +++ T Consensus 156 l~~e~~~~~~~~~~~~~~--n~~~~~vl~~g~~~~~l~~~~~d~q~-~e~~~~~~~~Ia~~fgVP~~~lg~~~~~--~~~ 230 (348) T protein:vir:93 156 VSTEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDI-VASENLTRERVANVFQLPSIFLNARSNT--NFA 230 (348) T ss_pred CCHHHHHHHHHHHHHHhh--cCCCeeecCCCceEEEcCCChhHHHH-HHHHHHHHHHHHHHhCCCHHHhCCCCCC--Ccc Confidence 467889999999999874 67899999999999999999999997 5999999999999999999999975544 455 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Q lcl|Aclame:pro 288 NIDQIK-ATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTR 359 (383) Q Consensus 288 ~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~ 359 (383) +.|++. .++..||.|+++.|+++|+++|++ .+++||.++++++|.+++++++++++++|++|+||+|+++|+ T Consensus 231 ~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~ 310 (348) T protein:vir:93 231 KNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDL 310 (348) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCC Confidence 555555 555679999999999999999974 469999999999999999999999999999999999999999 Q ss_pred CCccCCccccccCCCC----------CCCCCCCC Q lcl|Aclame:pro 360 SGFLPDNLPEFKPLTN----------ETKGGDDK 383 (383) Q Consensus 360 ~p~~~~d~~~~~~~~~----------~~~gGd~~ 383 (383) +|+|++|......+.. ..+|||+- T Consensus 311 ~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gg~~n 344 (348) T protein:vir:93 311 PPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKN 344 (348) T ss_pred CCCCCcCeEeecccccccccchhhcccccCCCCC Confidence 9999999866544442 23567644 No 73 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=3.8e-66 Score=379.26 Aligned_cols=378 Identities=8% Similarity=0.000 Sum_probs=276.4 Q ss_pred Ccccchh-------------------ccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGLLTPK-------------------NFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVS 61 (383) Q Consensus 1 Mg~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia 61 (383) |.+.... ++.+...+. +.+...++..+. ..+.....-..+....++++||.++++.++ T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~~i~t~~~~va~~~~i~~~s~~~~ 110 (535) T protein:vir:10 34 KAIRPGRASARDTVDGIDIADGNVAGQYSVASISD--VLSTKKLLKAYA-DNDIVQAIIRTRTNQVLTYSNPSRYNRNGV 110 (535) T ss_pred hhhhhhhhhhhccccccccccCCcccccccCcccc--ccCHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhcccC Confidence 2222211 111111111 011111111111 111111111345567788999999999999 Q ss_pred cceeEeecch--------------hhhhhhCCCccCCHHH----HHHHHHHHHHhc-CCceEEEEecc----ceEEeecC Q lcl|Aclame:pro 62 SAHFKTENTA--------------TLNRLESPSSLIGRFS----FWQGALMQLCLS-GNDYIPLVGQN----LEHIPNSD 118 (383) Q Consensus 62 ~~~~~v~~~~--------------~~~l~~~PN~~~s~~~----f~~~~~~~l~l~-G~a~~~~~~~~----~~~~~~~~ 118 (383) ++|+++++.. ...|+.+||++|++++ |+++++.++++. |++|+++.++. .+++|++| T Consensus 111 ~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p 190 (535) T protein:vir:10 111 GFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDA 190 (535) T ss_pred cceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCC Confidence 9999987532 2356779999998875 556667776555 58899987753 56888888 Q ss_pred cceeeeecCC---ceEEEEEEecCceEEEEchhheEEecccCcc-ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 119 VQINYLPGNM---GIVYTVLESNDRPKMVLRQDQMLHFRLMPDP-QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 119 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~-~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) .++.+..+.. ...+++...+++....|++++|||+|+++.+ ...+.+|+||++++..++..+.++++++.++|+|| T Consensus 191 ~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng 270 (535) T protein:vir:10 191 SKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQG 270 (535) T ss_pred ceeEEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 8887655422 2345555566677788999999999986543 34467899999999999999999999999999999 Q ss_pred CCcceEEEEcCc---CCCHHHHHHHHHHHHHHhcC-cccCCceecc-CCceeEecccChhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 195 INPAGKLTISNY---LSDGKDLESAREEFEKANTG-DNSGRLMVLP-DGFDYTQLEMKTDVFKALADNSAYSADQISKAF 269 (383) Q Consensus 195 ~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~f 269 (383) ++|+++|+.++. ..++++++++++.|++.++| .|+|+++|+. +|++|++++++++|+|++ |++++++++||++| T Consensus 271 ~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfl-e~~~~~~~eIa~af 349 (535) T protein:vir:10 271 GTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFD-KFLNFMIYDTAAIF 349 (535) T ss_pred CCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHH-HHHHHHHHHHHHHh Confidence 999999999864 34678999999999999988 5888876665 799999999999999975 99999999999999 Q ss_pred cCCHHHhccccccccc----------hhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCC---ceeeeechhhhccCHHHH Q lcl|Aclame:pro 270 GVPSDILGGGTSTESQ----------HSNIDQIKATYL-ANLNSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 270 gVp~~~lg~~~~~~~~----------~~~~e~~~~~~~-~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~ 335 (383) ||||++||..+.++.+ .++.|+....|. .||.||++.||++|+++|+. .+++|+++.+++.|.+++ T Consensus 350 gVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~~~~~f~f~~l~~~d~~~r 429 (535) T protein:vir:10 350 QMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRYVDTDYRFSFTLGDAQDKLQE 429 (535) T ss_pred CCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCeEEEEeccccccCHHHH Confidence 9999999987665432 345566665554 58999999999999999975 368899999999999999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCC-------------CCC------------------------ Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN-------------ETK------------------------ 378 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~-------------~~~------------------------ 378 (383) +++++.+. +|+||+||+|+++|++|+++||.+......+ +.. T Consensus 430 ~~~~~~~~-~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~ 508 (535) T protein:vir:10 430 EQVWKLKL-ANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYE 508 (535) T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccCcccccccccc Confidence 99887655 6789999999999999999999754322111 000 Q ss_pred CCCCC Q lcl|Aclame:pro 379 GGDDK 383 (383) Q Consensus 379 gGd~~ 383 (383) +|.++ T Consensus 509 ~g~~~ 513 (535) T protein:vir:10 509 KGKDD 513 (535) T ss_pred cCCCC Confidence 00000 No 74 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=8.9e-67 Score=382.70 Aligned_cols=374 Identities=10% Similarity=0.008 Sum_probs=270.0 Q ss_pred Ccccchhccccc--cccccccccchhhhhhhccCccccccc-HHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKR--NAKNMVYPSNPAFFTTTVGGMQLSYVS-ALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLE 77 (383) Q Consensus 1 Mg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~ 77 (383) |++-+.-..... ...+.....+ .++..+. .+.+... .+.+..+++|++||++||++||++|++++......+.. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~~~~~~~~ 82 (540) T protein:vir:41 6 LSIKSLEKYRAIKGDTDSQALKED-RFEEYVE--PKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGDDGGVEEL 82 (540) T ss_pred cChhhccchhhhhccccccccccC-CCCcccc--CCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecCccchhhh Confidence 555542211111 1111111111 1111111 1111111 24445689999999999999999999998877776666 Q ss_pred CCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCce---------EEEEE--------E Q lcl|Aclame:pro 78 SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGI---------VYTVL--------E 136 (383) Q Consensus 78 ~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------~~~~~--------~ 136 (383) .||++||+.+|++.++.+++++||||++++++. .+++|+++.++.+..+..+. .|+.. . T Consensus 83 lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 162 (540) T protein:vir:41 83 LRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNP 162 (540) T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeecccccceeec Confidence 799999999999999999999999999998764 46788888777665443321 11111 1 Q ss_pred ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHH----- Q lcl|Aclame:pro 137 SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGK----- 211 (383) Q Consensus 137 ~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~----- 211 (383) ..+...+.+++++|||+|.+++ ..+++|+||+.++..++..+.++.+++.++|+||++|+++|+.++.+.+++ T Consensus 163 ~~g~~~~~~~~~eViHir~~~~--~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~ 240 (540) T protein:vir:41 163 DNGEDQDGVGANEIIFIHLPSP--ICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSD 240 (540) T ss_pred cccccceeecccceEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchH Confidence 1233456799999999997543 336799999999999999999999999999999999999999998766543 Q ss_pred ----HHHHHHHHHHHHhcC--cccCCceecc------CCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 212 ----DLESAREEFEKANTG--DNSGRLMVLP------DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG 279 (383) Q Consensus 212 ----~~~~~~~~~~~~~~g--~n~g~~~vl~------~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~ 279 (383) .++++++.|+..+.| .|+|+++|++ +|++|++++++++|+|++ |++++++++||++|||||.+||.. T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfl-e~~~~~~~eIa~afgVPp~~lG~~ 319 (540) T protein:vir:41 241 GEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFR-EYAAEKKHDIAAAHMIDPYRLGIT 319 (540) T ss_pred HHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHH-HHHHHHHHHHHHHhCCCHHHcCcc Confidence 245677777777766 4788999984 799999999999999975 999999999999999999999988 Q ss_pred cccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCC-----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 280 TSTESQHSNIDQIKAT-YLANLNSYVNPIVDELRLKMNA-----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQA 353 (383) Q Consensus 280 ~~~~~~~~~~e~~~~~-~~~tl~p~~~~i~~~l~~~l~~-----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~ 353 (383) +.+..++++.|++... +..||.|+++.|+++|+++|+. .+++||.+.+++.|.+++ +++++++|++|+||+ T Consensus 320 ~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~i~f~~~~ll~~D~~~~---~~~lv~~G~lT~NE~ 396 (540) T protein:vir:41 320 DVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLDPGARFVFNEEILMESEFVHN---YALLVQCGVLTPSEV 396 (540) T ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEEEecchhhcchHHHHH---HHHHHhCCCCCHHHH Confidence 7776677777777655 4669999999999999999864 368999999998876554 567899999999999 Q ss_pred HHHh-CCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 354 QFIL-TRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 354 R~~~-g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) |+.+ |++|.+..-+.........++++++. T Consensus 397 Re~L~g~e~gdd~~l~p~n~~~~~~~~~~~~ 427 (540) T protein:vir:41 397 REKLFGLDGGPDMFMVPSSIGKSAMKRQKRN 427 (540) T ss_pred HHHhCcCcCCCcccccccccccccccccccc Confidence 9854 55543222111111111122222111 No 75 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=3e-66 Score=379.78 Aligned_cols=380 Identities=13% Similarity=0.101 Sum_probs=281.0 Q ss_pred Ccccchhccccccccc-------------------------------cccccchh-hhhhhccCcc-----ccccc---- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN-------------------------------MVYPSNPA-FFTTTVGGMQ-----LSYVS---- 39 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~~~~~-----~~~~~---- 39 (383) ||||+++....+.+.. .+. +.+. ....+..+.. ..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 79 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAY-SQPVIGSMSANPGFKTKPSIRNNQDLHGV 79 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhh-hchhhheeecccccccCCccCChhHHHHH Confidence 9999997553221100 000 0000 0111111111 11111 Q ss_pred HHHHhhhHHHHHHHHHHHHhhccc-------------eeEeecc-------------hhhhhhhCCCcc-----CCHHHH Q lcl|Aclame:pro 40 ALSALQNTNVYSVINRIASDVSSA-------------HFKTENT-------------ATLNRLESPSSL-----IGRFSF 88 (383) Q Consensus 40 ~~~~~~~~~v~~~i~~ia~~ia~~-------------~~~v~~~-------------~~~~l~~~PN~~-----~s~~~f 88 (383) .+.+..+|+|++||+++|+.||+. ++++++. ....++.+||++ +|+.+| T Consensus 80 ~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f 159 (547) T protein:vir:63 80 LKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSF 159 (547) T ss_pred HHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHH Confidence 134456899999999999999964 3333321 123467788887 488999 Q ss_pred HHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCce-----EEEEEEecCceEEEEchhheEEecccCcc Q lcl|Aclame:pro 89 WQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGI-----VYTVLESNDRPKMVLRQDQMLHFRLMPDP 159 (383) Q Consensus 89 ~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vih~r~~~~~ 159 (383) ++.++.+++++||+|++++++. .+++|++|.++.+..+..+. .+++...++.....|++++|||+|+++.. T Consensus 160 ~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~ 239 (547) T protein:vir:63 160 VKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRS 239 (547) T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCC Confidence 9999999999999999998753 46888888888776554442 34455666777788999999999975533 Q ss_pred -ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCc-CCCHHHHHHHHHHHHHHhcC-cccCCceec- Q lcl|Aclame:pro 160 -QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNY-LSDGKDLESAREEFEKANTG-DNSGRLMVL- 235 (383) Q Consensus 160 -~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl- 235 (383) ...+.+|+||+.++..++..+.++.+++.++|+||++|+++|+.++. ..++++++++++.|++.++| .|+|+++++ T Consensus 240 ~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~ 319 (547) T protein:vir:63 240 DIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS 319 (547) T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc Confidence 33456899999999999999999999999999999999999998754 34778999999999999988 689997655 Q ss_pred cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcccccc--------ccchhHHHHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 236 PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTST--------ESQHSNIDQIKA-TYLANLNSYVNP 306 (383) Q Consensus 236 ~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~--------~~~~~~~e~~~~-~~~~tl~p~~~~ 306 (383) ++|++|+++++++.|+|++ |++++++++||++|||||++||....+ +.++++.|++.. ++..||.|+++. T Consensus 320 ~~g~~~~~l~~~~~d~qfl-e~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ 398 (547) T protein:vir:63 320 AEDVKFVNMTPSARDMEFE-KWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGF 398 (547) T ss_pred CCCceEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 6899999999999999975 999999999999999999999964432 335566676664 556799999999 Q ss_pred HHHHHHhhcCC---ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-ccCCccccccCCCCCC----- Q lcl|Aclame:pro 307 IVDELRLKMNA---PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSG-FLPDNLPEFKPLTNET----- 377 (383) Q Consensus 307 i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p-~~~~d~~~~~~~~~~~----- 377 (383) ||++|+++|+. ..++|+++.+...+..++++++ +++.+|+||+||+|+++|++| +++||.+.......+. T Consensus 399 ie~~ln~~L~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~ 477 (547) T protein:vir:63 399 IEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQ 477 (547) T ss_pred HHHHHHhhcccccCCceEEEeeccccccHHHHHHHH-HHHhCCCcCHHHHHHHhCCCCCCCCCceeeccccccccccccc Confidence 99999999975 3577888887778887777765 577889999999999999999 6888865433222211 Q ss_pred -------------------CCCCCC Q lcl|Aclame:pro 378 -------------------KGGDDK 383 (383) Q Consensus 378 -------------------~gGd~~ 383 (383) .++++. T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (547) T protein:vir:63 478 QEQFEHEKQQSNLQMLQEQTGNRVS 502 (547) T ss_pred ccCCccccchhhccccccccCCCCC Confidence 011110 No 76 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=4.5e-66 Score=378.81 Aligned_cols=379 Identities=11% Similarity=0.031 Sum_probs=271.0 Q ss_pred Ccccch--------------hccccccc-cccc-----------------cccchhhhhhhccC-cccccccHHHHhhhH Q lcl|Aclame:pro 1 MGLLTP--------------KNFSKRNA-KNMV-----------------YPSNPAFFTTTVGG-MQLSYVSALSALQNT 47 (383) Q Consensus 1 Mg~~~~--------------~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 47 (383) |++=.- +-+..... ++.. ....+..+...... ....++.....+... T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~ 106 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSN 106 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHH Confidence 222110 00000000 0000 00000000000000 111223444555677 Q ss_pred HHHHHHHHHHHhhccceeEeecc---------------hhhhhhh----CCCccC-CHHHHHHHHHHHHHhcCCceEEEE Q lcl|Aclame:pro 48 NVYSVINRIASDVSSAHFKTENT---------------ATLNRLE----SPSSLI-GRFSFWQGALMQLCLSGNDYIPLV 107 (383) Q Consensus 48 ~v~~~i~~ia~~ia~~~~~v~~~---------------~~~~l~~----~PN~~~-s~~~f~~~~~~~l~l~G~a~~~~~ 107 (383) .|++|+.+|+.++|+|||+|+.. +...|+. .|||++ |+.+|++.++.+++++||+|++++ T Consensus 107 ~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~ 186 (574) T protein:vir:80 107 QVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKV 186 (574) T ss_pred HHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEE Confidence 88999999999999999998642 1223443 467775 788999999999999999999998 Q ss_pred ecc----ceEEeecCcceeeeecCCce-----EEEEEEecCceEEEEchhheEEecccCc-cccCccccCcHHHHHHHHH Q lcl|Aclame:pro 108 GQN----LEHIPNSDVQINYLPGNMGI-----VYTVLESNDRPKMVLRQDQMLHFRLMPD-PQYRYLIGRSPLESLQNAL 177 (383) Q Consensus 108 ~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vih~r~~~~-~~~~~~~G~spi~~~~~~i 177 (383) ++. .+++|++|.++.+..+..+. ..++...++.....+++++|||+|+.+. +...+.+|+||+.++..++ T Consensus 187 r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i 266 (574) T protein:vir:80 187 FDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQF 266 (574) T ss_pred ECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHH Confidence 753 57899999988887654432 2344455677788999999999997543 3445678999999999999 Q ss_pred HHHHHHHHHHHHHHhccCCcceEEEEcCc-CCCHHHHHHHHHHHHHHhcC-cccCCce-eccCCceeEecccChhHHHHH Q lcl|Aclame:pro 178 NLDDKASKSNMSAMENQINPAGKLTISNY-LSDGKDLESAREEFEKANTG-DNSGRLM-VLPDGFDYTQLEMKTDVFKAL 254 (383) Q Consensus 178 ~~~~~~~~~~~~~~~ng~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~n~g~~~-vl~~g~~~~~l~~~~~~~~~l 254 (383) ..+.++.+++.++|+||++|+++|+++++ ..++++.+++++.|++.++| .|+|+++ ++++|++|+++++++.|+|++ T Consensus 267 ~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfl 346 (574) T protein:vir:80 267 IAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFE 346 (574) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHH Confidence 99999999999999999999999998754 35788999999999999988 6888864 557899999999999999975 Q ss_pred HHHHHHHHHHHHHHhcCCHHHhccccccc--------cchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCc-----ee Q lcl|Aclame:pro 255 ADNSAYSADQISKAFGVPSDILGGGTSTE--------SQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNAP-----DL 320 (383) Q Consensus 255 ~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~--------~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~~-----~~ 320 (383) |++++++++||++|||||++||....++ .++++.|++. .++..||.|+++.||++|+++|+.. ++ T Consensus 347 -e~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~ 425 (574) T protein:vir:80 347 -KWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFGEKYQF 425 (574) T ss_pred -HHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCceEE Confidence 9999999999999999999999765433 3346666665 4556799999999999999999753 56 Q ss_pred eeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCC---------------------- Q lcl|Aclame:pro 321 ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETK---------------------- 378 (383) Q Consensus 321 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~---------------------- 378 (383) +|+..++++.+. .. .+..++.+|+||+||+|+++|++|+++||.+....+..++. T Consensus 426 ~f~~~d~~~~~~--~~-~~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (574) T protein:vir:80 426 QFRGGDLSAQLD--KL-KIIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLE 502 (574) T ss_pred EecccchhhHHH--HH-HHHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhcccccccc Confidence 666555543222 22 23457889999999999999999999999765543332221 Q ss_pred --CCCCC Q lcl|Aclame:pro 379 --GGDDK 383 (383) Q Consensus 379 --gGd~~ 383 (383) +++++ T Consensus 503 ~~~~~~~ 509 (574) T protein:vir:80 503 LSGGDVE 509 (574) T ss_pred ccCCCCC Confidence 11111 No 77 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=1.5e-65 Score=375.96 Aligned_cols=379 Identities=12% Similarity=0.063 Sum_probs=269.6 Q ss_pred Ccccchhccccccccccccccchhhhhh----hccCc----ccccc--------cHHHHhhhHHHHHHHHHHHHhhccc- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTT----TVGGM----QLSYV--------SALSALQNTNVYSVINRIASDVSSA- 63 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~--------~~~~~~~~~~v~~~i~~ia~~ia~~- 63 (383) =++|..+-.+.............++... ..++. ..+.+ ....+..+|+|++||++||++||++ T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~ 111 (576) T protein:vir:96 32 QANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYC 111 (576) T ss_pred hHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhh Confidence 1112111111000000000000000000 00000 00011 1123446889999999999999863 Q ss_pred ------------eeEeecch-----------------hhhhhhCCCcc-CCHHHHHHHHHHHHHhcCCceEEEEec---- Q lcl|Aclame:pro 64 ------------HFKTENTA-----------------TLNRLESPSSL-IGRFSFWQGALMQLCLSGNDYIPLVGQ---- 109 (383) Q Consensus 64 ------------~~~v~~~~-----------------~~~l~~~PN~~-~s~~~f~~~~~~~l~l~G~a~~~~~~~---- 109 (383) ++++++.. ...++..|||+ +|+.+|++.++.+++++||+|+++++. T Consensus 112 ~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~ 191 (576) T protein:vir:96 112 QPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNA 191 (576) T ss_pred hhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCC Confidence 34443221 11223456666 589999999999999999999998742 Q ss_pred --cceEEeecCcceeeeecCCceEE-----EEEEecCceEEEEchhheEEecc-cCccccCccccCcHHHHHHHHHHHHH Q lcl|Aclame:pro 110 --NLEHIPNSDVQINYLPGNMGIVY-----TVLESNDRPKMVLRQDQMLHFRL-MPDPQYRYLIGRSPLESLQNALNLDD 181 (383) Q Consensus 110 --~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~vih~r~-~~~~~~~~~~G~spi~~~~~~i~~~~ 181 (383) ..+++|++|.++.+..+.++..+ ++...++.....+++++|||+++ +..+...+.+|+||+.++..++..+. T Consensus 192 g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~ 271 (576) T protein:vir:96 192 TTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYN 271 (576) T ss_pred CceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHH Confidence 35789999999988777766543 23445566777899999987764 34444556789999999999999999 Q ss_pred HHHHHHHHHHhccCCcceEEEEcCc-CCCHHHHHHHHHHHHHHhcC-cccCC-ceeccCCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 182 KASKSNMSAMENQINPAGKLTISNY-LSDGKDLESAREEFEKANTG-DNSGR-LMVLPDGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 182 ~~~~~~~~~~~ng~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~n~g~-~~vl~~g~~~~~l~~~~~~~~~l~e~~ 258 (383) ++.+++.++|+||++|+++|+.++. ..++++++++++.|++.++| .|+|+ ++|+++|++|+++++++.|+|++ |++ T Consensus 272 ~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfl-e~~ 350 (576) T protein:vir:96 272 NTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFE-KWL 350 (576) T ss_pred HHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHHH-HHH Confidence 9999999999999999999998864 34778999999999999988 68888 58999999999999999999975 999 Q ss_pred HHHHHHHHHHhcCCHHHhcccccc---------ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCc---eeeeech Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTST---------ESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNAP---DLELDIK 325 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~---------~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~~---~~~fd~~ 325 (383) ++.+++||++|||||++||..+.+ +.++++.|+... ++..||.||++.||++|+++|+.. .+.|+ T Consensus 351 ~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~-- 428 (576) T protein:vir:96 351 TYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYSDKYVFQ-- 428 (576) T ss_pred HHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccCceEEE-- Confidence 999999999999999999976544 234566666665 556699999999999999999754 34444 Q ss_pred hhhccCHHHHHHHHHHH--HhCCCcCHHHHHHHhCCCCccCCccccccCCCCCC-----CCC-CCC Q lcl|Aclame:pro 326 DMLDVDDSILINQVSNL--AKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNET-----KGG-DDK 383 (383) Q Consensus 326 ~ll~~d~~~~~~~~~~~--~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~-----~gG-d~~ 383 (383) +++.|.+++++.++.+ +.+|+||+||+|+++|++|+++||.+.......+. +++ +++ T Consensus 429 -f~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~ 493 (576) T protein:vir:96 429 -FVGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDT 493 (576) T ss_pred -eccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCc Confidence 4677888888876644 56799999999999999999999875433222111 111 111 No 78 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=2.4e-66 Score=380.30 Aligned_cols=329 Identities=14% Similarity=0.133 Sum_probs=244.2 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec----------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN----------- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~----------- 69 (383) ||||+++....+.... .+.. ......+...+++.++|++||++||++||++|++++. T Consensus 1 Mg~f~~~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~ 68 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLN----NDTQ--------RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) T ss_pred CCccccchhccccccc----CCcc--------eeeeeccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCcccccc Confidence 9999987432222111 1111 0111222345678889999999999999999998642 Q ss_pred -----chhhh-hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEE Q lcl|Aclame:pro 70 -----TATLN-RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 70 -----~~~~~-l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383) |+.+. |..+||++||+++||+.++.+++++||||++++++.. .+.+++....+ ..+ T Consensus 69 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~----------------~g~~~~l~p~~--~~~ 130 (378) T protein:vir:94 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN----------------TGELLDLLFAD--DKK 130 (378) T ss_pred cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCC----------------CceEEEEEecC--Cee Confidence 33333 4458999999999999999999999999998765421 11111111111 234 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH---HHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG---KDLESAREEF 220 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~---~~~~~~~~~~ 220 (383) ++++++|||+|++ .++..|.||++.+...+... +++ +.++++++.++.+.++ ++++++++.+ T Consensus 131 ~~~~~diiH~~~~----~~~~~g~s~l~~~~~~i~~~----------~~~-~~~~gil~~~~~l~~~~~~~~~~~~~~~~ 195 (378) T protein:vir:94 131 EYKPEELVRLTSP----FYINEDTSILDNALASIQTK----------LEQ-GKLRGLLKINAFLDIDNTQEYREKALTTI 195 (378) T ss_pred EeeeeeeEEecCc----CCccchhHHHHHHHHHHHHH----------Hhc-ccccceeeeCCcCCHHHHHHHHHHHHHHH Confidence 6889999999953 23457999999888776432 334 4589999998876542 2334555666 Q ss_pred HHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANL 300 (383) Q Consensus 221 ~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl 300 (383) +..++|.++|+++++++|++|+++++++.++| + +.+++++++||++|||||.+|++. ++ .++...++..|| T Consensus 196 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgVP~~~l~~~------~s-e~~~~~f~~~tL 266 (378) T protein:vir:94 196 KNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGYFMNENILLGT------AS-QEQQIYFYNSTI 266 (378) T ss_pred HHhhcccccccceecCCCceEEEccCChhhhh-H-HHHHHHHHHHHHHhCCCHHHhcCC------hH-HHHHHHHHHHHH Confidence 66667788899999999999999999999998 4 567899999999999999999532 22 245667778899 Q ss_pred HHHHHHHHHHHHhhcCCc-------------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL 367 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~-------------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~ 367 (383) .||+++||++|+++|+++ .++||.+.++++|.+++++++++++++|+||+||+|+++|++|+++||. T Consensus 267 ~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~ 346 (378) T protein:vir:94 267 IPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV 346 (378) T ss_pred HHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 999999999999999864 3789999999999999999999999999999999999999999999987 Q ss_pred ccccCCCCCC----------------CCCCCC Q lcl|Aclame:pro 368 PEFKPLTNET----------------KGGDDK 383 (383) Q Consensus 368 ~~~~~~~~~~----------------~gGd~~ 383 (383) +....+..++ ..+++| T Consensus 347 ~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 347 YIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred eeecccccccccchhhcCCcCCCCCCCCCCCC Confidence 6555443332 122222 No 79 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=3.8e-65 Score=373.77 Aligned_cols=372 Identities=13% Similarity=0.018 Sum_probs=268.4 Q ss_pred ccchhcc-----ccccccccccccchhhhhhhccCcccccccHH----HHhhhHHHHHHHHHHHHhhccceeEeecchhh Q lcl|Aclame:pro 3 LLTPKNF-----SKRNAKNMVYPSNPAFFTTTVGGMQLSYVSAL----SALQNTNVYSVINRIASDVSSAHFKTENTATL 73 (383) Q Consensus 3 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~ 73 (383) +|+..|. .+...+.....+.......+.... ...++.. .+..+++|++||++||++||++|++++..... T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~-~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~~~~ 79 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYV-EPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGDDEG 79 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccc-cCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeecccch Confidence 4443222 111111111111111111111111 1123333 23357999999999999999999999876554 Q ss_pred hh-hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEE---------EEEE--- Q lcl|Aclame:pro 74 NR-LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVY---------TVLE--- 136 (383) Q Consensus 74 ~l-~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---------~~~~--- 136 (383) .+ ...||++||+++|++.++.+++++||||++++++. .+++|+++..+.+..+...... +..+ T Consensus 80 ~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~ 159 (542) T protein:vir:41 80 VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDYRYE 159 (542) T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEeeecCCcceeEEeeccc Confidence 33 44699999999999999999999999999998754 5678888877776654433221 1111 Q ss_pred -----ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC---- Q lcl|Aclame:pro 137 -----SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL---- 207 (383) Q Consensus 137 -----~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~---- 207 (383) ..+.....+++++|||+|+++. ..+++|+||+.++..++..+.++.+++.++|+||++|+++|+.++.. T Consensus 160 ~~~~~~~g~~~~~~~~~eIiHir~~~~--~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~ 237 (542) T protein:vir:41 160 GEINPETGEDQDSVGANELVFIHIPSP--VCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEL 237 (542) T ss_pred ccccccccccccccCcccEEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCcccccc Confidence 1122234688899999997652 33679999999999999999999999999999999999999987643 Q ss_pred -----CCHHHHHHHHHHHHHHhcC--cccCCceec------cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHH Q lcl|Aclame:pro 208 -----SDGKDLESAREEFEKANTG--DNSGRLMVL------PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSD 274 (383) Q Consensus 208 -----~~~~~~~~~~~~~~~~~~g--~n~g~~~vl------~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~ 274 (383) .++++.+++++.|++.+.| .|+|+++|+ ++|++|++++++++|++++ |.+++.+++||++|||||. T Consensus 238 ~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfl-e~~~~~~~~Ia~afgVPp~ 316 (542) T protein:vir:41 238 EEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFR-EYAAEKKYDIAAAHMIDPY 316 (542) T ss_pred ccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHH-HHHHHHHHHHHHHhCCCHH Confidence 3567889999999998876 477889998 4799999999999999975 9999999999999999999 Q ss_pred HhccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC-----ceeeeechhhhccCHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 275 ILGGGTSTESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNA-----PDLELDIKDMLDVDDSILINQVSNLAKSGVL 348 (383) Q Consensus 275 ~lg~~~~~~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~-----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~ 348 (383) +||....++.+.++.|++.. |+..||.|+++.|+++||++|+. .+++|+.+.+++.|.. +.+++++++|++ T Consensus 317 ~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~ll~~d~~---~~~~~~v~~Gil 393 (542) T protein:vir:41 317 RLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNPKTRFKFNDETLLESDSV---RNCALLVQSGVL 393 (542) T ss_pred HhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEecchhhcchHHH---HHHHHHHhCCCC Confidence 99987777666677776655 45679999999999999999864 3688999999887744 456778999999 Q ss_pred CHHHHHHHhCCCCccCCccccc---cCCCCCCCCCCCC Q lcl|Aclame:pro 349 GAEQAQFILTRSGFLPDNLPEF---KPLTNETKGGDDK 383 (383) Q Consensus 349 t~nE~R~~~g~~p~~~~d~~~~---~~~~~~~~gGd~~ 383 (383) |+||+|+.+ +|++|+|.+.. ......+++++++ T Consensus 394 T~NE~Re~L--~g~~pgdd~~l~p~~~~~~~~~~~~~n 429 (542) T protein:vir:41 394 TPAEARERL--FGLDGGPDIFMVPSKGAAKSVKRQERN 429 (542) T ss_pred CHHHHHHhh--CCCCCCCccccccccccccccccCCcC Confidence 999999853 34444443221 1111222222222 No 80 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=6.2e-66 Score=378.06 Aligned_cols=329 Identities=14% Similarity=0.133 Sum_probs=243.7 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec----------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN----------- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~----------- 69 (383) ||||+++....+..... +. .......+...+++.++|++||++||++||++|++++. T Consensus 1 Mg~f~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~ 68 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNN----DT--------QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) T ss_pred CccchhhhhhhcccccC----Cc--------ceeeecccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccccccccc Confidence 99999874322222111 11 11111222345678889999999999999999998752 Q ss_pred -----chhhh-hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEE Q lcl|Aclame:pro 70 -----TATLN-RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 70 -----~~~~~-l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383) ++... |..+||++||+++||+.++.+++++||||++++++.. .+..++....+ ..+ T Consensus 69 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~----------------~g~~~~l~~~~--~~~ 130 (378) T protein:vir:16 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDN----------------TGELLDLLFAD--DKK 130 (378) T ss_pred cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecC----------------CceEEEEEecC--Cee Confidence 33344 4458999999999999999999999999998876431 11111111111 235 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH---HHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG---KDLESAREEF 220 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~---~~~~~~~~~~ 220 (383) .|++++|||+|.. ..+..|.||++.+...+. +.+.+ +.++++++.+..+.++ ++++++++.| T Consensus 131 ~~~~~diih~r~~----~~~~~~~s~l~~~~~~i~----------~~~~~-~~~~g~l~~~~~l~~~~~~~~~~~~~~~~ 195 (378) T protein:vir:16 131 EYKPEELVRLTSP----FYINEDTSILDNALASIQ----------TKLEQ-GKLRGLLKINAFLDIDNTQEYREKALTTI 195 (378) T ss_pred EecccceEEecCc----cCccchhHHHHHHHHHHH----------HHHhc-CccceeeEeCCcCCHHHHHHHHHHHHHHH Confidence 6889999999952 234568899888776653 23334 4588999998876542 3345566666 Q ss_pred HHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANL 300 (383) Q Consensus 221 ~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl 300 (383) ++..+|.++|+++++++|++|+++++++.++| + +.+++++++||++|||||.+|++. ++ .++...++..|| T Consensus 196 ~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgVPp~~l~g~------~~-e~~~~~f~~~tl 266 (378) T protein:vir:16 196 KNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGYFMNENILLGT------AS-QEQQIYFYNSTI 266 (378) T ss_pred HHhhcccccccceEcCCCceEEEccCChhhhh-H-HHHHHHHHHHHHHhCCCHHHhcCC------ch-HHHHHHHHHHHH Confidence 66667788899999999999999999999998 4 456889999999999999999531 22 245667777899 Q ss_pred HHHHHHHHHHHHhhcCCc-------------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL 367 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~-------------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~ 367 (383) .||+++||++|+++|+++ .++||++.+++.|.+++++++.+++++|++|+||+|+++|++|+++||. T Consensus 267 ~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~ 346 (378) T protein:vir:16 267 IPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV 346 (378) T ss_pred HHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 999999999999999864 3789999999999999999999999999999999999999999999987 Q ss_pred ccccCCCCCC-------------CCCCCC Q lcl|Aclame:pro 368 PEFKPLTNET-------------KGGDDK 383 (383) Q Consensus 368 ~~~~~~~~~~-------------~gGd~~ 383 (383) +....+..++ ++|||. T Consensus 347 ~~~~~n~~~~~~~~~~~~~~~~~~~~~e~ 375 (378) T protein:vir:16 347 YIANLNAVAVKNLSDLQGSRKDVTSTDET 375 (378) T ss_pred EeeccccccccchhhhcCccCCCCCCCCC Confidence 6555544332 122222 No 81 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=5e-65 Score=373.12 Aligned_cols=377 Identities=11% Similarity=0.046 Sum_probs=272.0 Q ss_pred Ccccchhccccccccccccccchhhh--hhhccCcc--ccccc----HHHHhhhHHHHHHHHHHHHhhcc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFF--TTTVGGMQ--LSYVS----ALSALQNTNVYSVINRIASDVSS---------- 62 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~----~~~~~~~~~v~~~i~~ia~~ia~---------- 62 (383) +.++.+-..++.. ..+.+-..... ..+..... ....+ .+.+..+++|++||+.+++.||. T Consensus 43 ~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~ 120 (563) T protein:vir:99 43 YQDLTKSLYGQQQ--AYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEK 120 (563) T ss_pred HHHHHhhhccCCC--cchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcc Confidence 4555443222211 11111100000 00110000 00112 22333478899999999998885 Q ss_pred ---ceeEeecch-------------hhhhhh----CCCcc-CCHHHHHHHHHHHHHhcCCceEEEE--ec----cceEEe Q lcl|Aclame:pro 63 ---AHFKTENTA-------------TLNRLE----SPSSL-IGRFSFWQGALMQLCLSGNDYIPLV--GQ----NLEHIP 115 (383) Q Consensus 63 ---~~~~v~~~~-------------~~~l~~----~PN~~-~s~~~f~~~~~~~l~l~G~a~~~~~--~~----~~~~~~ 115 (383) +|+++++.. ...++. .|||+ +|+++|++.++.+++++||+|++++ ++ ..+++| T Consensus 121 ~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~p 200 (563) T protein:vir:99 121 GLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIA 200 (563) T ss_pred cccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEE Confidence 566665422 112222 34444 6889999999999999999999865 32 357899 Q ss_pred ecCcceeeeecCCceEE-----EEEEecCceEEEEchhheEEec-ccCccccCccccCcHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 116 NSDVQINYLPGNMGIVY-----TVLESNDRPKMVLRQDQMLHFR-LMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMS 189 (383) Q Consensus 116 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~vih~r-~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~ 189 (383) ++|.++.+..+..+..+ ++...++.....+++++|||++ ++..+...+.+|+||+.++..++..+.++.+++.+ T Consensus 201 l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~ 280 (563) T protein:vir:99 201 VDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDR 280 (563) T ss_pred eCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 99999988777665543 3455566677789999987655 44445555778999999999999999999999999 Q ss_pred HHhccCCcceEEEEcCcC-CCHHHHHHHHHHHHHHhcC-cccCCc-eeccCCceeEecccChhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 190 AMENQINPAGKLTISNYL-SDGKDLESAREEFEKANTG-DNSGRL-MVLPDGFDYTQLEMKTDVFKALADNSAYSADQIS 266 (383) Q Consensus 190 ~~~ng~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g-~n~g~~-~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia 266 (383) +|+||++|+++|+.+++. .++++++++++.|++.++| .|+|++ +|+++|++|+++++++.|+|++ |++++.+++|| T Consensus 281 ~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfl-e~~~~~~~~Ia 359 (563) T protein:vir:99 281 FFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFE-KWLNYLINIIS 359 (563) T ss_pred HHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHH-HHHHHHHHHHH Confidence 999999999999988653 4788999999999999988 588885 7899999999999999999975 99999999999 Q ss_pred HHhcCCHHHhcccccc---------ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCc---eeeeechhhhccCHH Q lcl|Aclame:pro 267 KAFGVPSDILGGGTST---------ESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDS 333 (383) Q Consensus 267 ~~fgVp~~~lg~~~~~---------~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~~---~~~fd~~~ll~~d~~ 333 (383) ++|||||++||..+.+ +.++++.|+... ++..||.||++.||++|+++|+.. .+.|+ +++.|.+ T Consensus 360 ~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~---f~r~D~~ 436 (563) T protein:vir:99 360 ALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDKYTFQ---FVGGDTK 436 (563) T ss_pred HHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccccEEE---eccCCHH Confidence 9999999999976543 224456666654 556799999999999999999865 33443 5678999 Q ss_pred HHHHHHH--HHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCC------CCCCC Q lcl|Aclame:pro 334 ILINQVS--NLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETK------GGDDK 383 (383) Q Consensus 334 ~~~~~~~--~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~------gGd~~ 383 (383) +++++++ +++++|+||+||+|+++|++|+++||.+.......+.. +.+++ T Consensus 437 ~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~ 494 (563) T protein:vir:99 437 SATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDG 494 (563) T ss_pred HHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCcc Confidence 9888665 46899999999999999999999998755433322111 11111 No 82 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=5e-65 Score=373.12 Aligned_cols=377 Identities=11% Similarity=0.046 Sum_probs=272.0 Q ss_pred Ccccchhccccccccccccccchhhh--hhhccCcc--ccccc----HHHHhhhHHHHHHHHHHHHhhcc---------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFF--TTTVGGMQ--LSYVS----ALSALQNTNVYSVINRIASDVSS---------- 62 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~----~~~~~~~~~v~~~i~~ia~~ia~---------- 62 (383) +.++.+-..++.. ..+.+-..... ..+..... ....+ .+.+..+++|++||+.+++.||. T Consensus 43 ~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~ 120 (563) T protein:vir:95 43 YQDLTKSLYGQQQ--AYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEK 120 (563) T ss_pred HHHHHhhhccCCC--cchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcc Confidence 4555443222211 11111100000 00110000 00112 22333478899999999998885 Q ss_pred ---ceeEeecch-------------hhhhhh----CCCcc-CCHHHHHHHHHHHHHhcCCceEEEE--ec----cceEEe Q lcl|Aclame:pro 63 ---AHFKTENTA-------------TLNRLE----SPSSL-IGRFSFWQGALMQLCLSGNDYIPLV--GQ----NLEHIP 115 (383) Q Consensus 63 ---~~~~v~~~~-------------~~~l~~----~PN~~-~s~~~f~~~~~~~l~l~G~a~~~~~--~~----~~~~~~ 115 (383) +|+++++.. ...++. .|||+ +|+++|++.++.+++++||+|++++ ++ ..+++| T Consensus 121 ~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~p 200 (563) T protein:vir:95 121 GLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIA 200 (563) T ss_pred cccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEE Confidence 566665422 112222 34444 6889999999999999999999865 32 357899 Q ss_pred ecCcceeeeecCCceEE-----EEEEecCceEEEEchhheEEec-ccCccccCccccCcHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 116 NSDVQINYLPGNMGIVY-----TVLESNDRPKMVLRQDQMLHFR-LMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMS 189 (383) Q Consensus 116 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~vih~r-~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~ 189 (383) ++|.++.+..+..+..+ ++...++.....+++++|||++ ++..+...+.+|+||+.++..++..+.++.+++.+ T Consensus 201 l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~ 280 (563) T protein:vir:95 201 VDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDR 280 (563) T ss_pred eCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 99999988777665543 3455566677789999987655 44445555778999999999999999999999999 Q ss_pred HHhccCCcceEEEEcCcC-CCHHHHHHHHHHHHHHhcC-cccCCc-eeccCCceeEecccChhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 190 AMENQINPAGKLTISNYL-SDGKDLESAREEFEKANTG-DNSGRL-MVLPDGFDYTQLEMKTDVFKALADNSAYSADQIS 266 (383) Q Consensus 190 ~~~ng~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g-~n~g~~-~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia 266 (383) +|+||++|+++|+.+++. .++++++++++.|++.++| .|+|++ +|+++|++|+++++++.|+|++ |++++.+++|| T Consensus 281 ~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfl-e~~~~~~~~Ia 359 (563) T protein:vir:95 281 FFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFE-KWLNYLINIIS 359 (563) T ss_pred HHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHH-HHHHHHHHHHH Confidence 999999999999988653 4788999999999999988 588885 7899999999999999999975 99999999999 Q ss_pred HHhcCCHHHhcccccc---------ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCc---eeeeechhhhccCHH Q lcl|Aclame:pro 267 KAFGVPSDILGGGTST---------ESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNAP---DLELDIKDMLDVDDS 333 (383) Q Consensus 267 ~~fgVp~~~lg~~~~~---------~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~~---~~~fd~~~ll~~d~~ 333 (383) ++|||||++||..+.+ +.++++.|+... ++..||.||++.||++|+++|+.. .+.|+ +++.|.+ T Consensus 360 ~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~---f~r~D~~ 436 (563) T protein:vir:95 360 ALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDKYTFQ---FVGGDTK 436 (563) T ss_pred HHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcccccEEE---eccCCHH Confidence 9999999999976543 224456666654 556799999999999999999865 33443 5678999 Q ss_pred HHHHHHH--HHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCC------CCCCC Q lcl|Aclame:pro 334 ILINQVS--NLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETK------GGDDK 383 (383) Q Consensus 334 ~~~~~~~--~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~------gGd~~ 383 (383) +++++++ +++++|+||+||+|+++|++|+++||.+.......+.. +.+++ T Consensus 437 ~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~ 494 (563) T protein:vir:95 437 SATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDG 494 (563) T ss_pred HHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCcc Confidence 9888665 46899999999999999999999998755433322111 11111 No 83 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=5.6e-65 Score=372.83 Aligned_cols=340 Identities=14% Similarity=0.054 Sum_probs=262.5 Q ss_pred HHHHh-hhHHHHHHHHHHHHhhccceeEeecch----------------hhhhhhCCCccC--------CHHHHHHHHHH Q lcl|Aclame:pro 40 ALSAL-QNTNVYSVINRIASDVSSAHFKTENTA----------------TLNRLESPSSLI--------GRFSFWQGALM 94 (383) Q Consensus 40 ~~~~~-~~~~v~~~i~~ia~~ia~~~~~v~~~~----------------~~~l~~~PN~~~--------s~~~f~~~~~~ 94 (383) .+..+ .+|+|++||++||++||++|++++.+. ...+..+||+.| ++.+|++.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 23333 479999999999999999999986321 113445677754 67799999999 Q ss_pred HHHhcCCceEEEEecc----ceEEeecCcceeeeecCCce--------EEEE---------------------EEecCce Q lcl|Aclame:pro 95 QLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGI--------VYTV---------------------LESNDRP 141 (383) Q Consensus 95 ~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~~~---------------------~~~~~~~ 141 (383) +++++||||++++++. ..++++++.++.+..+.... .++. .....+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 9999999999998864 46788887777654433211 1110 0112344 Q ss_pred EEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHH Q lcl|Aclame:pro 142 KMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFE 221 (383) Q Consensus 142 ~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~ 221 (383) ...+++++|||+|.+++. .+.+|+||+.++..++..+.++.+++.++|+||++|+++++.++...++++.+++++.|+ T Consensus 161 ~~~~~~~diih~r~~~~~--~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~ 238 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPL--YPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIE 238 (467) T ss_pred eeEeccccEEEecCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHH Confidence 567999999999975533 367899999999999999999999999999999999999999877678899999999999 Q ss_pred HHhcC------------cccCCceeccCCceeEecc--------cChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 222 KANTG------------DNSGRLMVLPDGFDYTQLE--------MKTDVFKALADNSAYSADQISKAFGVPSDILGGGTS 281 (383) Q Consensus 222 ~~~~g------------~n~g~~~vl~~g~~~~~l~--------~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~ 281 (383) +.+++ .|+++++++.+|.++++++ .+++|+|++ |++++++++||++|||||.+||.... T Consensus 239 ~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~-e~~~~~~~~Ia~~fgVpp~~lG~~~~ 317 (467) T protein:vir:31 239 DNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFL-EFRGRNEHDILKVHDVPPVIAGVVES 317 (467) T ss_pred hhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHH-HHHHHHHHHHHHHhCCCHHHcccCCC Confidence 87652 4778899998876655543 356889975 99999999999999999999997665 Q ss_pred cccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 282 TESQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQA 353 (383) Q Consensus 282 ~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~ 353 (383) ++. +++.|+.. .++..||.|+++.|+++||++|++ .+++||++.+++.|.++++++++.++++|++|+||+ T Consensus 318 ~~~-~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~ 396 (467) T protein:vir:31 318 GAF-STDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNEL 396 (467) T ss_pred CCc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 543 34555554 556679999999999999999975 368999999999999999999999999999999999 Q ss_pred HHHhCCCCccCCccccccCCCC-------CCC--------CCCCC Q lcl|Aclame:pro 354 QFILTRSGFLPDNLPEFKPLTN-------ETK--------GGDDK 383 (383) Q Consensus 354 R~~~g~~p~~~~d~~~~~~~~~-------~~~--------gGd~~ 383 (383) |+++|++|+++++......... +.+ +++++ T Consensus 397 R~~~Gl~pi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (467) T protein:vir:31 397 RDEFGFEPFPEEHVYGGETLVAEVTGGSGPGGGIGDQIEQLVEDR 441 (467) T ss_pred HHHhCCCCCCcccccCCcccccccccccCCCCcccCcCCCCCCCc Confidence 9999999997655422111111 111 11121 No 84 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=1.4e-65 Score=376.08 Aligned_cols=329 Identities=14% Similarity=0.142 Sum_probs=242.9 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec----------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN----------- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~----------- 69 (383) ||||+++....+.... .+.. ......+...+++.++|++||++||++||++|++++. T Consensus 1 Mg~f~~~~~f~~~~~~----~~~~--------~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~ 68 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLN----NDTQ--------RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) T ss_pred CccchhhhhhhccccC----CCcc--------eeeecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccccccccc Confidence 9999987432222111 1110 1111122335678889999999999999999998753 Q ss_pred -----chhhh-hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEE Q lcl|Aclame:pro 70 -----TATLN-RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 70 -----~~~~~-l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383) ++... |..+|||+||+++||+.++.+++++||||++++++.. .+..++.... .... T Consensus 69 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~----------------~g~~~~l~~~--~~~~ 130 (378) T protein:vir:93 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDN----------------TGELLDLLFA--DDKK 130 (378) T ss_pred cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecC----------------CceEEEEEec--CCee Confidence 23333 4458999999999999999999999999998765421 1111221222 1235 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH---HHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG---KDLESAREEF 220 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~---~~~~~~~~~~ 220 (383) +|++++|||+|.. .++..|.||++.+...+. +.+.+| .++++++.++.+.++ +.++++++.| T Consensus 131 ~~~~~diih~r~~----~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~~~l~~~~~~~~~~~~~~~~ 195 (378) T protein:vir:93 131 EYKTEELVRLTSP----FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKINAFLDIDNTQEYREKALTTI 195 (378) T ss_pred EeccceeEEecCc----cccchhhHHHHHHHHHHH----------HHHhcC-cccceeeeCCcCCHHHHHHHHHHHHHHH Confidence 6899999999953 224568899887766553 344555 589999998876542 2344555555 Q ss_pred HHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANL 300 (383) Q Consensus 221 ~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl 300 (383) ++..++.++|+++++++|++|++++++++++| + +.+++++++||++|||||++|++. ++ .++...++..|| T Consensus 196 ~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgVPp~~l~g~------~~-e~~~~~f~~~tl 266 (378) T protein:vir:93 196 KNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGYFMNENILLGT------AT-QEQQIYFYNSTI 266 (378) T ss_pred HHhhcccccccceEcCCCceEEEccCChhhhh-H-HHHHHHHHHHHHHhCCCHHHhcCC------cH-HHHHHHHHHHHH Confidence 56667778889999999999999999999998 4 667899999999999999999532 22 245566777899 Q ss_pred HHHHHHHHHHHHhhcCCc-------------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL 367 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~-------------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~ 367 (383) .||+++||++|+++|+++ .++||++.++++|.+++++++.+++++|++|+||+|+++|++|++++|. T Consensus 267 ~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~ 346 (378) T protein:vir:93 267 IPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV 346 (378) T ss_pred HHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 999999999999999864 3889999999999999999999999999999999999999999999997 Q ss_pred ccccCCCCCCC-------------CCCC---C Q lcl|Aclame:pro 368 PEFKPLTNETK-------------GGDD---K 383 (383) Q Consensus 368 ~~~~~~~~~~~-------------gGd~---~ 383 (383) +....+..++. .||| | T Consensus 347 ~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 347 YIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred eeeccccccccchhhhcCccCCCCCCCCCCCC Confidence 66554443321 1111 2 No 85 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=7.3e-65 Score=372.19 Aligned_cols=329 Identities=13% Similarity=0.127 Sum_probs=243.1 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec----------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN----------- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~----------- 69 (383) ||||++++...+..... ... .....+....+++.++|++||++||++||++|++++. T Consensus 1 M~if~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~ 68 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNN---DTQ---------RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) T ss_pred CchhHHhHhhhhccccc---Ccc---------eeeeeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeecccccccccc Confidence 99999875433221111 110 1111233445678889999999999999999998753 Q ss_pred -----ch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEE Q lcl|Aclame:pro 70 -----TA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 70 -----~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383) ++ .++|+.+|||+||+++||+.++.++++.||||++++.. +..+.+++.....++ . T Consensus 69 ~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~----------------~~~g~~~~~~~~~~~--~ 130 (378) T protein:vir:94 69 ISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFD----------------SETGELLDLLFANDK--K 130 (378) T ss_pred cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEee----------------CCCCcEEEEEEecCc--E Confidence 22 34556689999999999999999999999999975421 233334444444333 4 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH---HHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG---KDLESAREEF 220 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~---~~~~~~~~~~ 220 (383) ++++++|+|+|.+.... .+.+++..+...+. ..++++ .++++++.+..++++ ++++++++.| T Consensus 131 ~~~~~dvih~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~-~~~g~l~~~~~l~~~~~~~~~e~~~~~~ 195 (378) T protein:vir:94 131 EYKPEELVRLTSPFYIN----EDTSILDNALASIQ----------TKLEQG-KLRGLLKINAFLDIDNTQEYREKALATI 195 (378) T ss_pred EechhceeeecCcCCcc----cchhHHHHHHHHHH----------HHHhhC-CcccceeeCCcCCHHHHHHHHHHHHHHH Confidence 58999999999533221 24566665554433 223344 578999998876542 3456677777 Q ss_pred HHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANL 300 (383) Q Consensus 221 ~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl 300 (383) ++.+++.|+|+++++++|++|+++++++.++| + +.+++++++||++|||||++|++. ++ .++...++..|| T Consensus 196 ~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgvPp~~l~g~------~~-e~~~~~f~~~tl 266 (378) T protein:vir:94 196 KNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGYFMNENILLGT------AT-QEQQIYFYNSTI 266 (378) T ss_pred HHhhcccccccceeccCCceEEEccCChHHhh-H-HHHHHHHHHHHHHhCCCHHHhcCC------ch-HHHHHHHHHHHH Confidence 77778888899999999999999999999998 5 677899999999999999999632 11 244556777899 Q ss_pred HHHHHHHHHHHHhhcCCc-------------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc Q lcl|Aclame:pro 301 NSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL 367 (383) Q Consensus 301 ~p~~~~i~~~l~~~l~~~-------------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~ 367 (383) .||+++||++|+++|+++ .++||.+.++++|.+++++++.+++++|++|+||+|+++|++|++++|. T Consensus 267 ~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~ 346 (378) T protein:vir:94 267 IPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV 346 (378) T ss_pred HHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 999999999999999753 3789999999999999999999999999999999999999999999987 Q ss_pred ccccCCCCCC-------------CCC---CCC Q lcl|Aclame:pro 368 PEFKPLTNET-------------KGG---DDK 383 (383) Q Consensus 368 ~~~~~~~~~~-------------~gG---d~~ 383 (383) +....+..++ ++| ++| T Consensus 347 ~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 347 YIANLNAVAVKNLSDLQGNRKDVTSTDETNNQ 378 (378) T ss_pred eeecccccchhcchhcccccCCCCCCCCCCCC Confidence 6655444332 111 222 No 86 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=3.8e-64 Score=368.25 Aligned_cols=328 Identities=13% Similarity=0.122 Sum_probs=237.7 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec----------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN----------- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~----------- 69 (383) ||||++++...+..... .... ..+.++...+++.++|++||++||++||+||+++++ T Consensus 1 M~~f~k~~~~~~~~~~~---~~~~---------~~~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~ 68 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNN---DTQR---------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) T ss_pred Cchhhhhhhhhhccccc---CCcc---------eeeeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEeccccccccc Confidence 99999874322211111 1110 111233345678899999999999999999998763 Q ss_pred -----ch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEEEEEecCceEE Q lcl|Aclame:pro 70 -----TA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) Q Consensus 70 -----~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (383) ++ .++|+.+||++||+++||+.++.+++++||||++++. .+..+..++.....++ . T Consensus 69 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~----------------~~~~g~~~~~~~~~~~--~ 130 (378) T protein:vir:85 69 ISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIF----------------DSETGELLDLLFANDK--K 130 (378) T ss_pred cccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEee----------------cCCCceEEEEEecCCC--E Confidence 22 2345668999999999999999999999999997642 2233444444444443 4 Q ss_pred EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH----HHHHHH Q lcl|Aclame:pro 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL----ESAREE 219 (383) Q Consensus 144 ~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~----~~~~~~ 219 (383) .+.+++|||++.... ...+.+++..+...+ ...+++ +.|+++++.++.+.+ ++. +++++. T Consensus 131 ~~~~~dvih~~~~~~----~~~~~~~~~~a~~~~----------~~~~~~-~~~~g~l~~~~~l~~-~~~~~~~~~~~~~ 194 (378) T protein:vir:85 131 EYKPEELVRLVSPFY----INEDTSILDNALASI----------QTKLEQ-GKLRGLLKINAFLDI-DNTQEYREKALAT 194 (378) T ss_pred EEcccceEEEecCcC----ccchhhHHHHHHHHH----------HHHHhc-CCcceEEEeCCcCCH-HHHHHHHHHHHHH Confidence 578899999984211 112344444333322 233444 468999999887643 444 444455 Q ss_pred HHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 220 FEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (383) Q Consensus 220 ~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~t 299 (383) +++..++.++|+++++++|++|+++++++.++| + +.+++++++||++|||||++|+.. ++ .++...++..| T Consensus 195 ~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgVPp~~l~~s------~~-e~~~~~f~~~t 265 (378) T protein:vir:85 195 IKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIELIKSELLTGYFMNENILLGT------AT-QEQQIYFYNST 265 (378) T ss_pred HHHhhcccccccceecCCCceEEeccCChhhhh-H-HHHHHHHHHHHHHhCCCHHHhcCC------ch-HHHHHHHHHHH Confidence 555667778899999999999999999999998 4 677899999999999999999531 22 24555677889 Q ss_pred HHHHHHHHHHHHHhhcCCc-------------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN 366 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~~-------------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d 366 (383) |.||+++||++|+++|+++ .++||.+.++++|.+++++++.+++++|++|+||+|+++|++|+++|| T Consensus 266 L~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD 345 (378) T protein:vir:85 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD 345 (378) T ss_pred HHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 9999999999999999864 378999999999999999999999999999999999999999999998 Q ss_pred cccccCCCCCC-------------CCC---CCC Q lcl|Aclame:pro 367 LPEFKPLTNET-------------KGG---DDK 383 (383) Q Consensus 367 ~~~~~~~~~~~-------------~gG---d~~ 383 (383) ......+..++ +.+ ++| T Consensus 346 ~~~~~~N~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:85 346 IYIANLNAVAVKNLSDLQGSRKDVASTDETNNQ 378 (378) T ss_pred eEeecccccccccchhhcCccCCCCCCCCCCCC Confidence 65544333322 111 222 No 87 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=2e-60 Score=347.88 Aligned_cols=377 Identities=10% Similarity=0.080 Sum_probs=256.7 Q ss_pred Ccccchh--ccccccc-c----------------c--------cccccchhh--h--------hhhccCc--ccccccH- Q lcl|Aclame:pro 1 MGLLTPK--NFSKRNA-K----------------N--------MVYPSNPAF--F--------TTTVGGM--QLSYVSA- 40 (383) Q Consensus 1 Mg~~~~~--~~~~~~~-~----------------~--------~~~~~~~~~--~--------~~~~~~~--~~~~~~~- 40 (383) -|||+|. +|++..- + . .....++.. + ....++. ....++. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d~~ 87 (648) T protein:vir:79 8 RGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEEPEFDFN 87 (648) T ss_pred chhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccccCCcCHH Confidence 7777764 3331100 0 0 000011110 0 0011111 1122332 Q ss_pred ---HHHhhhHHHHHHHHHHHHhhccceeEeecch--------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec Q lcl|Aclame:pro 41 ---LSALQNTNVYSVINRIASDVSSAHFKTENTA--------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ 109 (383) Q Consensus 41 ---~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~ 109 (383) +.+..+|.|++||++||++||++||++.... ...++.+||++||+++|++.++.+++++||||++++++ T Consensus 88 ~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiRd 167 (648) T protein:vir:79 88 EITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSRA 167 (648) T ss_pred HHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEec Confidence 2334689999999999999999999876443 23467799999999999999999999999999999875 Q ss_pred c-------------------ceEEeecCcceeeeecCCceEE-E-EEEecCceEEEEchhheEEecccCccccCccccCc Q lcl|Aclame:pro 110 N-------------------LEHIPNSDVQINYLPGNMGIVY-T-VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRS 168 (383) Q Consensus 110 ~-------------------~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~s 168 (383) . ..++|++|.++.+..+..+... | +...+++..+.|++++|||||++++. ++.+|+| T Consensus 168 ~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~--d~~~GlS 245 (648) T protein:vir:79 168 KDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREK--GRAFGTP 245 (648) T ss_pred CCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCC--CCceecc Confidence 3 3477888888887766665443 2 33344556678999999999965432 3568999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccCh Q lcl|Aclame:pro 169 PLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKT 248 (383) Q Consensus 169 pi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~ 248 (383) |+.++..++..+.++.++..++|+||++|+++++.+......++.+++.+.++..+.+.+..+..+....+.+.+ ..++ T Consensus 246 pi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~-~~s~ 324 (648) T protein:vir:79 246 WLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISS-IASN 324 (648) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcccccccccccccceeeccc-cCCH Confidence 999999999999999999999999999999999876433333455556666666554432222222222223222 2256 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----hcC-------- Q lcl|Aclame:pro 249 DVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRL----KMN-------- 316 (383) Q Consensus 249 ~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~----~l~-------- 316 (383) +++|+ .+++++++++||++|||||++||...++ +.++.++...+|..++.|+...++..++. .++ T Consensus 325 ~dlqf-le~rk~~~~eIa~aFgVPP~lLG~~~~s--s~stae~~~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~ 401 (648) T protein:vir:79 325 QIIDA-KEYLKHFEQRAFTVLGVSELMMGRGGTA--SRSTGDNLSSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPV 401 (648) T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCHhHcccCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 88886 5999999999999999999999975444 45555666777877777776655544432 221 Q ss_pred ---CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCC---------------CCCC Q lcl|Aclame:pro 317 ---APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLT---------------NETK 378 (383) Q Consensus 317 ---~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~---------------~~~~ 378 (383) ..+++|+++++++.|.+++++.+.+++++|+||+||+|+++|++|+++++.+...... .+.. T Consensus 402 l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 481 (648) T protein:vir:79 402 LNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAG 481 (648) T ss_pred ccccceEEEeecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCC Confidence 1358999999999999999999999999999999999999999999877532111000 0000 Q ss_pred CCC------CC Q lcl|Aclame:pro 379 GGD------DK 383 (383) Q Consensus 379 gGd------~~ 383 (383) ++. -+ T Consensus 482 ~~~~~a~~eg~ 492 (648) T protein:vir:79 482 GSSASASGDKK 492 (648) T ss_pred CCCCCcccccc Confidence 000 00 No 88 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=1.4e-59 Score=343.28 Aligned_cols=374 Identities=12% Similarity=0.047 Sum_probs=263.3 Q ss_pred Ccccchhccc--------------cccccccccccchhhhhhhccCccc--ccccHHHHhh-hHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MGLLTPKNFS--------------KRNAKNMVYPSNPAFFTTTVGGMQL--SYVSALSALQ-NTNVYSVINRIASDVSSA 63 (383) Q Consensus 1 Mg~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~v~~~i~~ia~~ia~~ 63 (383) |.==++-.+. ++++.+..-+.+ .+...- +.... ........++ ++++++||+++++.||++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~iag~ 78 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNSTQIPDH-RIQSHN-VGVNPPYNPDRLAAFLELNETLATGIRKKSRYEVGF 78 (651) T ss_pred CCCccceeeeeEEEeecccccccccccccccccchh-hhcccC-CCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhhhcc Confidence 3221110000 011111111111 111111 11111 1222344444 899999999999999999 Q ss_pred eeEeecch--------------hh-----------hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc----eEE Q lcl|Aclame:pro 64 HFKTENTA--------------TL-----------NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL----EHI 114 (383) Q Consensus 64 ~~~v~~~~--------------~~-----------~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~----~~~ 114 (383) .|.+.-.. .. .....+|+.+|+.++++.++.+++..||+|+.++++.. .++ T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~ 158 (651) T protein:vir:99 79 GFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPVGLA 158 (651) T ss_pred CceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhhhh Confidence 99864210 11 12334688999999999999999999999997765432 111 Q ss_pred eecCcceeee-------------------------------------------ecC------------------------ Q lcl|Aclame:pro 115 PNSDVQINYL-------------------------------------------PGN------------------------ 127 (383) Q Consensus 115 ~~~~~~~~~~-------------------------------------------~~~------------------------ 127 (383) +.++..+... .+. T Consensus 159 ~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~d~ 238 (651) T protein:vir:99 159 YVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYREDE 238 (651) T ss_pred hcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEeccCc Confidence 1111110000 000 Q ss_pred ---------CceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 128 ---------MGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPA 198 (383) Q Consensus 128 ---------~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 198 (383) ....+.+...+......+++++|||||+++. ..+++|+||+.++..++..+.++.+++.++|+||++|+ T Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~--~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~ 316 (651) T protein:vir:99 239 ESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSI--LEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPR 316 (651) T ss_pred ceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 0001111222334456789999999997643 23678999999999999999999999999999999999 Q ss_pred eEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-----------CceeEecccCh-hHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 GKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-----------GFDYTQLEMKT-DVFKALADNSAYSADQIS 266 (383) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-----------g~~~~~l~~~~-~~~~~l~e~~~~~~~~Ia 266 (383) ++|+.+++..++++++++++.|++.++ |+|+++++++ |++|++++.++ +|+|++ |++++++++|| T Consensus 317 gil~~~~~~ls~e~~~~lr~~~~~~~~--nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfl-e~r~~~~~eIa 393 (651) T protein:vir:99 317 MVIKVTGGELSEESKRDLRQMLNGLRE--ESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFR-QFREKNEHEIA 393 (651) T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHhc--cCCceEEeecccccccccccCCceEEEcCcCchhhHHHH-HHHHHHHHHHH Confidence 999998876788999999999998764 6788888865 99999999987 588975 99999999999 Q ss_pred HHhcCCHHHhccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCc---------eeeeechhhhccCHHHHH Q lcl|Aclame:pro 267 KAFGVPSDILGGGTSTESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNAP---------DLELDIKDMLDVDDSILI 336 (383) Q Consensus 267 ~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~~~~tl~p~~~~i~~~l~~~l~~~---------~~~fd~~~ll~~d~~~~~ 336 (383) ++|||||.+||....+ ++++.|++.. ++..||.|+++.||++||++|++. +++|+...+++.|.++++ T Consensus 394 ~afgVPp~~lG~~~~~--~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~~ 471 (651) T protein:vir:99 394 KVLEVPPVKIGVTDSA--NRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQLAE 471 (651) T ss_pred HHhCCCHHHhccCCCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHHHHH Confidence 9999999999986554 4555666554 556799999999999999999753 467888899999999999 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCccC--CccccccCC----CCCCCCCCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLGAEQAQFILTRSGFLP--DNLPEFKPL----TNETKGGDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t~nE~R~~~g~~p~~~--~d~~~~~~~----~~~~~gGd~~ 383 (383) +++.+++++|++|+||+|+++|++|+++ +|....... ..+.+|||++ T Consensus 472 e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~gge~~ 524 (651) T protein:vir:99 472 QRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGGGETE 524 (651) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccccccccccCCCCc Confidence 9999999999999999999999999965 443322211 1234566655 No 89 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=1.4e-51 Score=299.39 Aligned_cols=335 Identities=12% Similarity=0.063 Sum_probs=239.7 Q ss_pred Ccccchhccccc-cccccccc---------cchhhhhhhccCcccccccH------------HHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKR-NAKNMVYP---------SNPAFFTTTVGGMQLSYVSA------------LSALQNTNVYSVINRIAS 58 (383) Q Consensus 1 Mg~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~i~~ia~ 58 (383) |+=-++-..++. .....+.. +..+-...+..+.+....+. ..+++.|.-+.|+..+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 543332111111 00000000 00000011111122111111 113333444555544443 Q ss_pred hhccce-eEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEE Q lcl|Aclame:pro 59 DVSSAH-FKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYT 133 (383) Q Consensus 59 ~ia~~~-~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 133 (383) +-+.-. ....+++...++.+|||+||+.+|++ ++.+++++||||++++++. +.++|+++..+....+.+ .|+ T Consensus 81 ~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~--~~~ 157 (368) T protein:vir:79 81 AAAHHSSAVYVKRNILVSTFIPHPLLSRATFER-LVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDLN--TYF 157 (368) T ss_pred hccccchhhhhhcchhhhhcCCCcCCCHHHHHH-HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccCC--EEE Confidence 322111 01234556677889999999999975 6789999999999998754 567788777766544433 233 Q ss_pred EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 134 VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 134 ~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) + ...++..++|++++|||+|.+.+. .+++|+||+.++..++.+..++..+..++|+||++|+++|+.++...++++. T Consensus 158 ~-~~~~~~~~~~~~~dIihir~~~~~--~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l~~e~~ 234 (368) T protein:vir:79 158 F-VQNWQQPYTFAAGSVFHLQEPDIN--QEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQKQEDV 234 (368) T ss_pred E-EecCCeEEEEccccEEEecCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHH Confidence 2 334567788999999999965433 3679999999999999999999999999999999999999998876788999 Q ss_pred HHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhH Q lcl|Aclame:pro 214 ESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSN 288 (383) Q Consensus 214 ~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~ 288 (383) +++++.|++..+..|+|+++|+ ++|++|++++.+++|+|++ |.+++++++||++|||||.++|...+++.++++ T Consensus 235 ~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~-e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn 313 (368) T protein:vir:79 235 DTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFW-NIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGD 313 (368) T ss_pred HHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHH-HHHHHhHHHHHHHhCCCHHHccccCCCCCcccc Confidence 9999999987666899999998 6789999999999999975 999999999999999999999987776666777 Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 289 IDQIKAT-YLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSG 346 (383) Q Consensus 289 ~e~~~~~-~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G 346 (383) .|+.... +..+|.|+++.|+ +++.+|..+.++|+...+++.|.++++..... +. T Consensus 314 ~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~e~~rF~~~~l~~~D~~a~a~~~~r---sa 368 (368) T protein:vir:79 314 VEKAAMVFARNEVKPLQDRLL-AINDWIGDEVVRFAPYALGGHDQPAAAPGGQR---SA 368 (368) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccCcceeeechhHhhcccccccCCcccc---cC Confidence 7776654 4569999999998 68999988899999999999999988763321 11 No 90 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=7e-51 Score=295.56 Aligned_cols=258 Identities=17% Similarity=0.233 Sum_probs=214.3 Q ss_pred hccceeEeecch-------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC Q lcl|Aclame:pro 60 VSSAHFKTENTA-------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM 128 (383) Q Consensus 60 ia~~~~~v~~~~-------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 128 (383) |||+|+++++.. .+.|+.+|||+||+++||+.++.+++++||||++++++. .+++|+++.++.+..+.+ T Consensus 1 ia~l~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~~ 80 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (278) T ss_pred CccceeEEEecCcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcCC Confidence 999999996532 345667999999999999999999999999999998753 477888888887765544 Q ss_pred -ceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC Q lcl|Aclame:pro 129 -GIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL 207 (383) Q Consensus 129 -~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~ 207 (383) ...++.+...++....+++++|||+|++++. .+++|.||+.++..++..+.++.+++...+.+ .|+++++.++.+ T Consensus 81 ~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~--~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~l 156 (278) T protein:vir:78 81 SRELYYSIHAATGNKLIVHNMDMLHFKHIVAS--NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSNV 156 (278) T ss_pred CceEEEEEEcCCceEEEEccccEEEECCCCCC--CCeeeccHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCCC Confidence 4555556666677889999999999975433 35789999999999999999999987655555 478888877765 Q ss_pred CCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchh Q lcl|Aclame:pro 208 SDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHS 287 (383) Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~ 287 (383) ++++.+++++.|++.+. ++|+++++++|++|+++++++.|+|+ .|.+++.+++||++|||||.+||...+++ ++ T Consensus 157 -~~e~~~~~~~~~~~~~~--~~g~~~vl~~g~~~~~l~~~~~d~~~-~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~--~s 230 (278) T protein:vir:78 157 -GKEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDI-VASENLTRERVANVFQLPSVFLNARSNTN--FA 230 (278) T ss_pred -CHHHHHHHHHHHHHHhc--cCCCceecCCCceEEEccCChhHHHH-HHHHHHHHHHHHHHhCCCHHHhCCCCCCC--cc Confidence 56888999999998774 57899999999999999999999997 59999999999999999999999866553 44 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC-------ceeeeechhh Q lcl|Aclame:pro 288 NIDQ-IKATYLANLNSYVNPIVDELRLKMNA-------PDLELDIKDM 327 (383) Q Consensus 288 ~~e~-~~~~~~~tl~p~~~~i~~~l~~~l~~-------~~~~fd~~~l 327 (383) +.++ ...++..||.|+++.|+++||++|++ .+++||++.| T Consensus 231 n~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 231 KNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 4455 44566779999999999999999985 3799999998 No 91 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=3.2e-51 Score=297.41 Aligned_cols=321 Identities=12% Similarity=0.111 Sum_probs=235.5 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHh-------------hhHHHHHHHHHHHHhh--cccee Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSAL-------------QNTNVYSVINRIASDV--SSAHF 65 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~i~~ia~~i--a~~~~ 65 (383) |+=..+ +.........+.... ..+.-+.+.++.+....+ +-|.-+..+..+.++. -+..+ T Consensus 1 m~~~~~---~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~~~~~h~~~i 75 (346) T protein:vir:10 1 MKKQLR---KNLTQNDRLQPQAQT--EIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDGLAKSLRSSTHHESAI 75 (346) T ss_pred CCcccC---CCCCcccccccccCe--EEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHHHHHHHHhhhhcchhh Confidence 443322 111111111110000 011111121111111111 1111122222222222 13345 Q ss_pred EeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCce Q lcl|Aclame:pro 66 KTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRP 141 (383) Q Consensus 66 ~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383) +++.+....++.+|||+||+.+|++ ++.+++++||||++++++. +.++|+++..+....+.++.. ++....++. T Consensus 76 ~~k~n~l~~l~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~~-~~~~~~~g~ 153 (346) T protein:vir:10 76 ITKANILLSTCEVDSRYLSRRDLSS-FVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFY-YVPQRFDHQ 153 (346) T ss_pred hhhhhhHHHHHhCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeEE-EEEEccCCe Confidence 5667777778889999999999987 5678999999999998754 467888888887766665544 344455667 Q ss_pred EEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHH Q lcl|Aclame:pro 142 KMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFE 221 (383) Q Consensus 142 ~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~ 221 (383) .++|++++|||+|.+.. ..+++|+||+.++..++.+..++.++..++|+||++|+++++.+++..++++.+++++.|+ T Consensus 154 ~~~~~~~dIih~r~~~~--~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~~i~~~~~ 231 (346) T protein:vir:10 154 EHEFAKGSIYHLLEPDI--NQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVENIRQQLK 231 (346) T ss_pred EEEEecccEEEecCCCC--CCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHH Confidence 78999999999997543 2367999999999999999999999999999999999999999887778899999999999 Q ss_pred HHhcCcccCCceecc-----CCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-H Q lcl|Aclame:pro 222 KANTGDNSGRLMVLP-----DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-T 295 (383) Q Consensus 222 ~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~ 295 (383) +.++++|+|+++++. .|+++++++.++.|+|++ |.+++++++||++|||||.++|...+++.++++.|++.. + T Consensus 232 ~~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~-e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f 310 (346) T protein:vir:10 232 QSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFF-NIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVF 310 (346) T ss_pred HhcCccccCceeEecCCCCccceeEEecCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHH Confidence 988778999999885 478999999999999975 999999999999999999999988777667777777655 4 Q ss_pred HHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCH Q lcl|Aclame:pro 296 YLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (383) Q Consensus 296 ~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~ 332 (383) +..+|.|+++.||+ ++.+|+.+.++|+...|++.|. T Consensus 311 ~~~~l~P~~~~iee-~n~~L~~e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 311 FITEIEPLQERLKE-FNQWLGQEVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHHHHHHH-HHhhcccceeeechhhhcccCC Confidence 55699999999985 8888888889999999999988 No 92 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=1.1e-49 Score=288.95 Aligned_cols=313 Identities=14% Similarity=0.117 Sum_probs=229.0 Q ss_pred Ccccchhccccccccc-----cccccc-hhh-hhhhccCcc-----------------cccccHHHHh----hhHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN-----MVYPSN-PAF-FTTTVGGMQ-----------------LSYVSALSAL----QNTNVYSV 52 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~-----~~~~~~-~~~-~~~~~~~~~-----------------~~~~~~~~~~----~~~~v~~~ 52 (383) |+--++.......... ...+.. ..| ++......+ ...++..... .++...+| T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~ 105 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 105 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhh Confidence 4433221110000000 000000 000 000000000 0012222111 23444555 Q ss_pred HHHHHHhhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC Q lcl|Aclame:pro 53 INRIASDVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM 128 (383) Q Consensus 53 i~~ia~~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 128 (383) |...++.+++ .-+|||.||+.+|++. +.+++++||||++++++. +.++|+++.++....+.+ T Consensus 106 l~~k~n~l~~-------------~~~Pnp~lT~~~f~~~-v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~ 171 (376) T protein:vir:10 106 LFFKANVLAS-------------TFRPHRWLSRHAFERW-ALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFN 171 (376) T ss_pred HHHHhHHHHh-------------ccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCC Confidence 5555544432 2379999999999865 568899999999998753 568888888877766655 Q ss_pred ceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC Q lcl|Aclame:pro 129 GIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS 208 (383) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~ 208 (383) +. + +...++..+.|++++|||+|.+.+ ..+++|+||+.++.+++.+..++.+|+.++|+||++|++||+.++... T Consensus 172 ~~--~-~~~~~~~~~~~~~~eViHir~~~~--~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l 246 (376) T protein:vir:10 172 GF--V-YVNGWQERHEFEPDSVFQLVRPDI--NQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQ 246 (376) T ss_pred eE--E-EEEcCCeEEEEccccEEEecCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCC Confidence 42 2 234456678899999999997543 336799999999999999999999999999999999999999988777 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccc Q lcl|Aclame:pro 209 DGKDLESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTE 283 (383) Q Consensus 209 ~~~~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~ 283 (383) ++++++++++.|++..+.+|+++++++ ++|++|++++.+++|+|++ |.+++++++||++|||||.++|..+.++ T Consensus 247 ~~e~~~~lr~~~~~~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~-e~k~~~~~eIa~af~VPp~llGi~~~~t 325 (376) T protein:vir:10 247 KQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFF-NIKNVTRDDLLAAHRVPPQLLGIVPSNS 325 (376) T ss_pred CHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEccCCHHHHHHH-HHHHHhHHHHHHHhCCCHHHhcccCCCC Confidence 889999999999986555788898888 5689999999999999975 9999999999999999999999987766 Q ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHH Q lcl|Aclame:pro 284 SQHSNIDQIKATY-LANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSI 334 (383) Q Consensus 284 ~~~~~~e~~~~~~-~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~ 334 (383) .++++.|++...| ..+|.|+++.|+ +++.+|..+.++||...|+++|.++ T Consensus 326 ~~~sn~eq~~~~f~~~~L~Pl~~~ie-eln~~L~~~~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 326 GGFGTPDTAARVFGRNEIRPLQARFA-ELNDWLGEEVVRFDDYEIPPAPVAA 376 (376) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHH-HHHhhccccccccChhHhhcccccC Confidence 6777877776555 569999999998 5889998889999999999999998 No 93 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=2.4e-49 Score=287.11 Aligned_cols=310 Identities=14% Similarity=0.128 Sum_probs=226.7 Q ss_pred cchhcccccccccc-------cc-cc-chhh-hhhhccCcc-----------------cccccHHHHh----hhHHHHHH Q lcl|Aclame:pro 4 LTPKNFSKRNAKNM-------VY-PS-NPAF-FTTTVGGMQ-----------------LSYVSALSAL----QNTNVYSV 52 (383) Q Consensus 4 ~~~~~~~~~~~~~~-------~~-~~-~~~~-~~~~~~~~~-----------------~~~~~~~~~~----~~~~v~~~ 52 (383) +++...+++..... +. +. ...| ++......+ ...++..... .++...+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 33221111111000 00 00 0000 000000000 0012221111 13333444 Q ss_pred HHHHHHhhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC Q lcl|Aclame:pro 53 INRIASDVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM 128 (383) Q Consensus 53 i~~ia~~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 128 (383) |...++.+++ .-+|||.||..+|++ ++.+++++||||++++++. ++++|+++.++....+.+ T Consensus 81 l~~k~n~l~~-------------~~~Pnp~~t~~~f~~-~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~ 146 (351) T protein:vir:79 81 LFFKANVLAS-------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFS 146 (351) T ss_pred hhhhhhHHhh-------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCC Confidence 4443333322 347999999999975 6679999999999998754 567888888777766555 Q ss_pred ceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC Q lcl|Aclame:pro 129 GIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS 208 (383) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~ 208 (383) + | ++...++..+.|++++|||+|.+.+. .+++|+||+.++.+++.+..++..|..++|+||++|+++++.+++.. T Consensus 147 ~--~-~~~~~~g~~~~~~~~eIihir~~~~~--~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~~~l 221 (351) T protein:vir:79 147 G--F-VYVNGWQERHEFEPDSVFQLVRPDIN--QEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQ 221 (351) T ss_pred e--E-EEEecCceEEEEcCccEEEeCCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCC Confidence 4 2 23445566788999999999975433 36799999999999999999999999999999999999999988777 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccc Q lcl|Aclame:pro 209 DGKDLESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTE 283 (383) Q Consensus 209 ~~~~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~ 283 (383) ++++.+++++.|++..+.+|+++++++ ++|+++++++.+++|+|++ |++++++++||++|||||.++|..+.++ T Consensus 222 s~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~-e~k~~s~~eI~~a~~VPp~llGi~~~~t 300 (351) T protein:vir:79 222 KQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFF-NIKNVTRDDLLAAHRVPPQLLGIVPSNS 300 (351) T ss_pred CHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhcccCCCC Confidence 889999999999986655788888888 5789999999999999975 9999999999999999999999987766 Q ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHH Q lcl|Aclame:pro 284 SQHSNIDQIKATY-LANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSI 334 (383) Q Consensus 284 ~~~~~~e~~~~~~-~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~ 334 (383) .++++.|++...| ..+|.|+++.|++ +|.+|..+.++||...++++|.++ T Consensus 301 ~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg~~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 301 GGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDEVVTFDDYEIPPAPVAA 351 (351) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcceeeeChhhhccccccC Confidence 6777777766555 5699999999975 888888888999999999999988 No 94 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=3.4e-49 Score=286.28 Aligned_cols=319 Identities=14% Similarity=0.153 Sum_probs=220.0 Q ss_pred Ccccchhccccccccccccccch-h-hhhhhccCcccc----c---ccHHHHhhhHHHHHHHHHHHHhhc--cceeEeec Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNP-A-FFTTTVGGMQLS----Y---VSALSALQNTNVYSVINRIASDVS--SAHFKTEN 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~----~---~~~~~~~~~~~v~~~i~~ia~~ia--~~~~~v~~ 69 (383) |+ ++. .++........+... . -|+......+.. + .....+++.|.-+.++..+.++-+ +-+++++. T Consensus 1 m~--~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~ 77 (340) T protein:vir:98 1 MS--KRK-PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) T ss_pred CC--CCC-CCccccccccCccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhhh Confidence 54 221 111111111111110 0 011111101000 0 001112222222333322221111 11222221 Q ss_pred chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceEEEE Q lcl|Aclame:pro 70 TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVL 145 (383) Q Consensus 70 ~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (383) +.... .-+|||+||..+|++ ++.+++++||||++++++. +.++|+++..+....+. . .|++ ...++..+.| T Consensus 78 n~l~~-~~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~-~-~~~~-~~~~~~~~~~ 152 (340) T protein:vir:98 78 NVLAS-TYIPHPLLSRQDFSR-FALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD-S-VFWF-VENFTQPHEF 152 (340) T ss_pred hHHhh-ccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccC-c-EEEE-EecCCeEEEE Confidence 11111 238999999999975 5578899999999998764 35677766666554332 2 3333 3345667889 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|.+.+ ..+++|+||+.++.+++.+..++..|+.++|+||++|++|++.+++..++++.+++++.|++..+ T Consensus 153 ~~~eViHir~~~~--~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G 230 (340) T protein:vir:98 153 APDTVFHLLEPDI--NQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKG 230 (340) T ss_pred ccccEEEEcCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcC Confidence 9999999996543 34679999999999999999999999999999999999999998877788999999999998755 Q ss_pred CcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH-HHH Q lcl|Aclame:pro 226 GDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LAN 299 (383) Q Consensus 226 g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~-~~t 299 (383) .+|.++++|+ ++|+++++++.+++|+|++ |++++++++||++|||||.++|.....+.++++.|+....| ..+ T Consensus 231 ~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~-e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~ 309 (340) T protein:vir:98 231 LGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFF-NIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNE 309 (340) T ss_pred ccccCceeEecCCCCccceEEEEcCCChhHHHHH-HHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHH Confidence 5788889888 5789999999999999975 99999999999999999999998776666667777766555 569 Q ss_pred HHHHHHHHHHHHHhhcCCceeeeechhhhccC Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNAPDLELDIKDMLDVD 331 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d 331 (383) |.|+++.||+ +|.+|..+.++|+...+++.| T Consensus 310 l~Pl~~~iee-~n~~L~~e~~rF~~~~l~~~d 340 (340) T protein:vir:98 310 LSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) T ss_pred HHHHHHHHHH-HHhcccccccccCccccccCC Confidence 9999999984 899998888999999999999 No 95 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=9.5e-49 Score=283.87 Aligned_cols=310 Identities=14% Similarity=0.122 Sum_probs=225.7 Q ss_pred cchhcccccccccc-------cc-cc-chhh-hhhhccCcc-----------------cccccHHHHh----hhHHHHHH Q lcl|Aclame:pro 4 LTPKNFSKRNAKNM-------VY-PS-NPAF-FTTTVGGMQ-----------------LSYVSALSAL----QNTNVYSV 52 (383) Q Consensus 4 ~~~~~~~~~~~~~~-------~~-~~-~~~~-~~~~~~~~~-----------------~~~~~~~~~~----~~~~v~~~ 52 (383) +++...+++..... +. +. ...| ++......+ ...++..... .++...+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 33221111111000 00 00 0000 000000000 0012222111 13333444 Q ss_pred HHHHHHhhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCC Q lcl|Aclame:pro 53 INRIASDVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNM 128 (383) Q Consensus 53 i~~ia~~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~ 128 (383) |...++.+++ .-+|||.||+++|++ ++.+++++||||++++++. ++++|+.+..+....+.+ T Consensus 81 l~~k~n~l~~-------------~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~ 146 (351) T protein:vir:78 81 LFFKANVLAS-------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFS 146 (351) T ss_pred hhhhhhHHhh-------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCC Confidence 4444433322 237999999999975 5578889999999998753 567888887777766555 Q ss_pred ceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC Q lcl|Aclame:pro 129 GIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS 208 (383) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~ 208 (383) + |++ ...++..+.|++++|||+|.+.+ ..+++|+||+.++.+++.+..++..|+.++|+||++|++|++.++... T Consensus 147 ~--~~~-~~~~~~~~~~~~~eVihir~~~~--~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~l 221 (351) T protein:vir:78 147 G--FVY-VNGWQERHEFAPDSVFQLVRPDI--NQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQ 221 (351) T ss_pred e--EEE-EecCCeEEEEccccEEEEcCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCC Confidence 4 222 33456678899999999997543 336799999999999999999999999999999999999999988767 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccc Q lcl|Aclame:pro 209 DGKDLESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTE 283 (383) Q Consensus 209 ~~~~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~ 283 (383) ++++.+++++.|++..+.+|+|+++++ ++|+++++++.+++|+|++ |.+++++++||++|||||.++|....++ T Consensus 222 s~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~-e~k~~~~~eIa~a~~VPp~llGi~~~~t 300 (351) T protein:vir:78 222 KQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFF-NIKNVTRDDLLAAHRVPPQLLGIVPSNS 300 (351) T ss_pred CHHHHHHHHHHHHHhcCcccccceeeecCCCCccceeEEEcCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhcccCCCC Confidence 889999999999987656899999888 4789999999999999975 9999999999999999999999877766 Q ss_pred cchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHH Q lcl|Aclame:pro 284 SQHSNIDQIKATY-LANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSI 334 (383) Q Consensus 284 ~~~~~~e~~~~~~-~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~ 334 (383) .++++.|+....| ..+|.|+++.|++ ++.+|..+.++||...|+++|.++ T Consensus 301 ~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 301 GGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDEVVRFDDYEIPPAPVAA 351 (351) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccceecChhhhccccccC Confidence 6677777766555 5699999999985 778888889999999999999998 No 96 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=2.8e-48 Score=281.28 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=217.9 Q ss_pred cchhccccccccccccccchhhhhhhccCcccccccH------------HHHhhhHHHHHHHHHH--HHhhccceeEeec Q lcl|Aclame:pro 4 LTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSA------------LSALQNTNVYSVINRI--ASDVSSAHFKTEN 69 (383) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~i~~i--a~~ia~~~~~v~~ 69 (383) +++...++..+....+.....-...+.-+.+....+. ..+++-|.-+.++..+ |+...+-+++++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhhh Confidence 2222111111111111100000000111111111000 0011111112222111 1222222333333 Q ss_pred chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceEEEE Q lcl|Aclame:pro 70 TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVL 145 (383) Q Consensus 70 ~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (383) +-... .-+|||+||+.+| +.++.+++++||||++++++. +.++|+++.++....+.+ .| +....++..+.| T Consensus 81 n~l~~-~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~--~~-~~v~~~~~~~~~ 155 (344) T protein:vir:60 81 NILAS-TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED--VY-WWVPSFNEPTAF 155 (344) T ss_pred hHHHh-hccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCC--eE-EEEccCCeEEEE Confidence 22111 3489999999999 567889999999999998754 457777777666655433 23 334556677899 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|.+.+ ..+++|+||+.++..++.+..++.+|..++|+||++|+++++.+++..++++++++++.|++.++ T Consensus 156 ~~~eIiHir~~~~--~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~g 233 (344) T protein:vir:60 156 APGSVFHLLEPDI--NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKG 233 (344) T ss_pred cCccEEEEcCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcC Confidence 9999999996543 23679999999999999999999999999999999999999998876788999999999998764 Q ss_pred CcccCCceec------cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH-HH Q lcl|Aclame:pro 226 GDNSGRLMVL------PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LA 298 (383) Q Consensus 226 g~n~g~~~vl------~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~-~~ 298 (383) .++++.+++ .+|+++++++.+++++|++ |.+++++++||++|||||.++|.....+.++++.|+....| .. T Consensus 234 -~~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~-e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~ 311 (344) T protein:vir:60 234 -RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN 311 (344) T ss_pred -CCCCcceEEecCCCCccceeEEEcCCChhHHHHH-HHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHH Confidence 466777776 4799999999999999975 99999999999999999999998776666677777666555 56 Q ss_pred HHHHHHHHHHHHHHhhcCCceeeeechhhhccCH Q lcl|Aclame:pro 299 NLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (383) Q Consensus 299 tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~ 332 (383) +|.|+++.+| +++.+|..+.++|+.-.+...|- T Consensus 312 ~L~Pl~~~~e-~ln~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 312 ELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHH-HHHHhcCCcccccCccccCCCCC Confidence 9999999998 59999988888888777655454 No 97 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=8e-48 Score=278.77 Aligned_cols=308 Identities=9% Similarity=0.013 Sum_probs=215.6 Q ss_pred Ccccchhccccccccccccccc-h------------------hhhhhhccC---cccccccHHHHh----hhHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSN-P------------------AFFTTTVGG---MQLSYVSALSAL----QNTNVYSVIN 54 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~---~~~~~~~~~~~~----~~~~v~~~i~ 54 (383) |. . ......+...... . .+..-+..+ .=...++..... .++...+||. T Consensus 1 ~~---~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~ 74 (348) T protein:vir:26 1 MT---E---QLIHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLK 74 (348) T ss_pred CC---c---cccchhhccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHh Confidence 22 1 1111111000000 0 000000000 000011111111 1233333443 Q ss_pred HHHHhhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCce Q lcl|Aclame:pro 55 RIASDVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGI 130 (383) Q Consensus 55 ~ia~~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 130 (383) ..++.+++ .-+|||.||+.+|++. +.+++++||||++++++. +.++|+++..+....+ +. T Consensus 75 ~k~N~l~~-------------~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d--~~ 138 (348) T protein:vir:26 75 ARANYVAG-------------RFMNGGGLPMYKMNSA-CWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKN--GD 138 (348) T ss_pred hhhhHHhh-------------cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeec--Cc Confidence 33333322 2269999999999775 568999999999998754 4567777776665543 22 Q ss_pred EEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH Q lcl|Aclame:pro 131 VYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG 210 (383) Q Consensus 131 ~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~ 210 (383) +|+ ...++..+.|++++|||+|.+.+. .+++|+||+.++.+++.+..++..+..++|+||++|++|+..+++..++ T Consensus 139 ~~~--~~~~g~~~~f~~~dIiHir~~~~~--~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~ 214 (348) T protein:vir:26 139 FVQ--LLRNNEQKVFKAKDVIFIPQYDPQ--QQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSE 214 (348) T ss_pred EEE--EEecCeEEEEcCccEEEEcCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH Confidence 222 333456778999999999975432 3678999999999999999999999999999999999999988877788 Q ss_pred HHHHHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccc Q lcl|Aclame:pro 211 KDLESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQ 285 (383) Q Consensus 211 ~~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~ 285 (383) ++++++++.|++..+++|+++++++ ++|+++++++.+++++|++ |.+++++++||++|||||.++|....++.+ T Consensus 215 e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~-e~k~~t~~dIa~af~VPp~llGi~~~~~~~ 293 (348) T protein:vir:26 215 ADEKALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFE-RIKNITAQDIFVGHRFPAGMGGMLPQQGAN 293 (348) T ss_pred HHHHHHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHH-HHHHhhHHHHHHHhCCCHHHccccCCCCCc Confidence 9999999999998766898999988 7899999999999999975 999999999999999999999987766667 Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCC---ceeeeechhhh-ccCHHHH Q lcl|Aclame:pro 286 HSNIDQIKATY-LANLNSYVNPIVDELRLKMNA---PDLELDIKDML-DVDDSIL 335 (383) Q Consensus 286 ~~~~e~~~~~~-~~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll-~~d~~~~ 335 (383) +++.|++...| ..+|.|+++.|+++||++|.. .+++||++... +.|..+. T Consensus 294 ~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 294 VPDPLKVSQVYDFYEVIPVCKRFMDAVNNDPEIPDNLKLKFNLNPGVESANGSAV 348 (348) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCccEEEEecCcccccchhhcC Confidence 77777766555 569999999999999999853 25778777532 2222222 No 98 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=8.6e-48 Score=278.62 Aligned_cols=319 Identities=13% Similarity=0.112 Sum_probs=219.5 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHH------------HhhhHHHHHHHHHH--HHhhccceeE Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALS------------ALQNTNVYSVINRI--ASDVSSAHFK 66 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~i~~i--a~~ia~~~~~ 66 (383) |+ +...++..+...+......-...|.-+.+....+... ++.=|.-+.++..+ |+...+.+++ T Consensus 1 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~ 77 (344) T protein:vir:20 1 MS---KKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) T ss_pred CC---cccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccce Confidence 33 2211111111111100000000111111111111111 11111112222222 2222233444 Q ss_pred eecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceE Q lcl|Aclame:pro 67 TENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPK 142 (383) Q Consensus 67 v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (383) ++.+-... .-+|||.||+.+| +.++.+++++||||++++++. +.++|+++.++....+.+. |+ ....++.. T Consensus 78 ~k~n~l~~-~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~--~~-~~~~~~~~ 152 (344) T protein:vir:20 78 VKRNILAS-TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--YW-WVPSFNEP 152 (344) T ss_pred ehhhhHHH-hccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCE--EE-EEccCCeE Confidence 44332222 3389999999999 577889999999999998754 4567777666665444332 33 34556677 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) +.|++++|||+|.+... .+++|+||+.++..++.+..++.+|..++|+||++|++|++++++..++++++++++.|++ T Consensus 153 ~~~~~~eIiHir~~~~~--~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~~ik~~~~~ 230 (344) T protein:vir:20 153 TAFAPGSVFHLLEPDIN--QELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVK 230 (344) T ss_pred EEEcCccEEEeCCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHH Confidence 89999999999965432 3679999999999999999999999999999999999999998877788999999999998 Q ss_pred HhcCcccCCceec------cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH Q lcl|Aclame:pro 223 ANTGDNSGRLMVL------PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY 296 (383) Q Consensus 223 ~~~g~n~g~~~vl------~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~ 296 (383) .++ .++++.+++ .+|+++++++.++.++|++ |.+++++++||++|||||.++|....++.++++.|+....| T Consensus 231 ~~g-~~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~-e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f 308 (344) T protein:vir:20 231 SKG-RNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVF 308 (344) T ss_pred hcC-CCCccceEEecCCCCccceeEEEcCCChhHHHHH-HHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHH Confidence 764 466777776 4699999999999999975 99999999999999999999998776666667777666555 Q ss_pred -HHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCH Q lcl|Aclame:pro 297 -LANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (383) Q Consensus 297 -~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~ 332 (383) ..+|.|+++.++ +++.+|..+.++|+...+-..|. T Consensus 309 ~~~~l~P~~~~~e-~in~~lg~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 309 VRNELIPLQDRIR-EINGWLGQEVIRFKNYSLDTDND 344 (344) T ss_pred HHHHHHHHHHHHH-HHHHhcCCcccccCccccccCCC Confidence 569999999998 68999988889998777655555 No 99 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=1.1e-47 Score=278.01 Aligned_cols=319 Identities=13% Similarity=0.128 Sum_probs=217.9 Q ss_pred cchhccccccccccccccchhhhhhhccCcccccccHHH------Hhhh------HHHHHHHHHH--HHhhccceeEeec Q lcl|Aclame:pro 4 LTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALS------ALQN------TNVYSVINRI--ASDVSSAHFKTEN 69 (383) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~------~~v~~~i~~i--a~~ia~~~~~v~~ 69 (383) +++...++..+...+......-...+.-+.+..+.+... +..+ |.-+.++..+ |+..-+-+++.+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~k~ 80 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccceehh Confidence 332211111111111100000000111111111111111 1111 1112222222 2222223444433 Q ss_pred chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCceEEEE Q lcl|Aclame:pro 70 TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVL 145 (383) Q Consensus 70 ~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (383) +-... .-+|||+||+.+| +.++.+++++||||++++++. +.++|+++..+....+.+. | ++...++..+.| T Consensus 81 n~l~~-~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~--~-~~~~~~g~~~~~ 155 (344) T protein:vir:56 81 NILAS-TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV--Y-WWVPSFNEPTAF 155 (344) T ss_pred hhHHh-hcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCE--E-EEEecCCeEEEE Confidence 32211 3489999999999 677889999999999998754 4577777766665444332 3 234456677889 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|.+.+ ..+++|+||+.++..++.++.++.+|..++|+||++|++|++.+++..++++++++++.|++.. T Consensus 156 ~~~dIiHir~~~~--~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e~~~~lk~~~~~~~- 232 (344) T protein:vir:56 156 APGSVFHLLEPDI--NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSK- 232 (344) T ss_pred cCccEEEECCCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhc- Confidence 9999999996543 3367999999999999999999999999999999999999999887668899999999999875 Q ss_pred CcccCCceec------cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH-HH Q lcl|Aclame:pro 226 GDNSGRLMVL------PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LA 298 (383) Q Consensus 226 g~n~g~~~vl------~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~-~~ 298 (383) |.++++++++ ++|+++++++.+++|+|++ |++++++++||++|||||.++|.....+.++++.|++...| .. T Consensus 233 g~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~-e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~ 311 (344) T protein:vir:56 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFF-NIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRN 311 (344) T ss_pred CCCCccceEEecCCCCccceeEEEcCCChHHHHHH-HHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHH Confidence 4567888887 4799999999999999975 99999999999999999999998776666677777766655 56 Q ss_pred HHHHHHHHHHHHHHhhcCCceeeeechhhhccCH Q lcl|Aclame:pro 299 NLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDD 332 (383) Q Consensus 299 tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~ 332 (383) ||.|+++.|| +++.+|+.+.++|+--.+-..|- T Consensus 312 tL~Pl~~~ie-~~n~~l~~~~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 312 ELIPLQDRIR-EINGWIGQEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHH-HHHhhhccccccCCCccccccCC Confidence 9999999998 58889988888886555433333 No 100 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=4.9e-47 Score=274.45 Aligned_cols=321 Identities=10% Similarity=0.072 Sum_probs=221.8 Q ss_pred Ccccchhccccccccccccccch--hhhhhhccCcccccc-----cHHHHhhhHHHHHHHHHH--HHhhccceeEeecch Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNP--AFFTTTVGGMQLSYV-----SALSALQNTNVYSVINRI--ASDVSSAHFKTENTA 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~i~~i--a~~ia~~~~~v~~~~ 71 (383) |.-... +.........+... +-+.......-.++. ....+..-|.-+.++..+ |+...+-.++++.+- T Consensus 1 ~~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~k~n~ 77 (345) T protein:vir:37 1 MKTNVK---TDNKKGIVIAPINDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANM 77 (345) T ss_pred CCCCcc---ccchhhcccCcceeEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceeeechH Confidence 322111 11000001111000 001111100000100 011122222223333222 222223334444332 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEE--EEEEecCceEEEE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVY--TVLESNDRPKMVL 145 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 145 (383) .. ..-+|||.||+++|++. +.+++++||||++++++. +.++|+++..+.+..+.+...+ ++....++..+.| T Consensus 78 l~-~~~~Pn~~lt~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~ 155 (345) T protein:vir:37 78 VS-SLYEGGKALSRMDMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKKSLYDTAQEIYRY 155 (345) T ss_pred HH-hhccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEEEeEecCCceEEEE Confidence 22 34479999999999865 578999999999998864 4677777777766555444332 2233455677899 Q ss_pred chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 146 RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 146 ~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) ++++|||+|.+++. .+++|+||+.++..++.+..++.+|+.++|+||++|++||..++...++++++++++.|++..+ T Consensus 156 ~~~dVihir~~~~~--~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g 233 (345) T protein:vir:37 156 DAKDIIFIKLYDPM--QQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKG 233 (345) T ss_pred ccccEEEecCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcC Confidence 99999999965433 3679999999999999999999999999999999999999998777788999999999999766 Q ss_pred CcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH-HHH Q lcl|Aclame:pro 226 GDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LAN 299 (383) Q Consensus 226 g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~-~~t 299 (383) +.|.++++++ ++|+++++++.+++|+|++ |.+++++++||++|||||.++|....++.++++.|++...| ..+ T Consensus 234 ~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~-e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~ 312 (345) T protein:vir:37 234 VGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFA-NIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDE 312 (345) T ss_pred cccccceEEEcCCCcccceEEEEccCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHH Confidence 6788888877 5799999999999999975 99999999999999999999998777666777777766555 569 Q ss_pred HHHHHHHHHHHHHhhcC---Cceeeeechhhhc Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMN---APDLELDIKDMLD 329 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~---~~~~~fd~~~ll~ 329 (383) |.|+++.|++++|+.+. ...++|+-.+|.+ T Consensus 313 l~P~~~~ie~~ln~~~~~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 313 VMPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHHhhhhccCCCcceEEecchhhcC Confidence 99999999999998652 3468888777766 No 101 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=4.7e-47 Score=274.56 Aligned_cols=306 Identities=11% Similarity=0.057 Sum_probs=217.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhcc---ceeEee------c-- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSS---AHFKTE------N-- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~---~~~~v~------~-- 69 (383) |+ +++..+...... .+.. .|.-+.+....+ ...+..|+...-+.++. .|+... + T Consensus 1 m~------~~~~~~~~~~~~-~~~~--~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~~ 65 (337) T protein:vir:78 1 MT------KRQQQPAQAAAS-SPRP--SVVFSMPEAIDP------TAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARAN 65 (337) T ss_pred CC------CcccCccccccc-Ccee--EEEecCcccccC------cchhHhhhhhhhccCcceecCCCCHHHHHHHhhcc Confidence 22 222222211111 1111 111122222222 22344444443332221 222110 1 Q ss_pred -chhhhhhhCCCccCCH----HHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEecCc Q lcl|Aclame:pro 70 -TATLNRLESPSSLIGR----FSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLESNDR 140 (383) Q Consensus 70 -~~~~~l~~~PN~~~s~----~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (383) +-...|..+||+.++. .++++.++.+++++||||++++++. +.++|+++..+....+ +..++ ...++ T Consensus 66 ~~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d--~~~~~--~~~~~ 141 (337) T protein:vir:78 66 AHHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRRED--GCFVY--LQQGK 141 (337) T ss_pred hhhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeC--CeEEE--EEcCC Confidence 1133567799987665 4789999999999999999998863 4678887777765543 33333 23345 Q ss_pred eEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF 220 (383) Q Consensus 141 ~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~ 220 (383) ....|++++|||+|.+++. .+++|+||+.++.+++.++.++.++..++|+||++|+++++.+++..++++++++++.| T Consensus 142 ~~~~~~~~eIiHik~~~~~--~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~~ 219 (337) T protein:vir:78 142 PNLIYRPDDVIWLAQYDPE--QQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEMI 219 (337) T ss_pred ceEEECCccEEEECCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHHH Confidence 6678999999999976532 36789999999999999999999999999999999999999988767889999999999 Q ss_pred HHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcccccc-ccchhHHHHHHH Q lcl|Aclame:pro 221 EKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTST-ESQHSNIDQIKA 294 (383) Q Consensus 221 ~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~-~~~~~~~e~~~~ 294 (383) ++..+++|.++++++ ++|+++++++.+++|+|++ |++++++++||++|||||+++|...++ ..++++.|++.. T Consensus 220 ~~~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfl-e~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~ 298 (337) T protein:vir:78 220 ANSKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFA-AIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDA 298 (337) T ss_pred HHhcCcccccceEEEcCCCCccceeEEEcCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHH Confidence 987655788888887 5789999999999999975 999999999999999999999986655 344566777665 Q ss_pred -HHHHHHHHHHHHHHHHHHhhcCCc----eeeeechhhh Q lcl|Aclame:pro 295 -TYLANLNSYVNPIVDELRLKMNAP----DLELDIKDML 328 (383) Q Consensus 295 -~~~~tl~p~~~~i~~~l~~~l~~~----~~~fd~~~ll 328 (383) ++..+|.|+++.||++++++|+.. .++|+...++ T Consensus 299 ~f~~~~L~P~~~~ie~~~n~~ll~~~~~~~f~~~~~~~~ 337 (337) T protein:vir:78 299 TYARNEVLPLCELVQDAINSAGLPRALWVTFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhhceeccccccccC Confidence 556799999999999999988764 2444555666 No 102 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=8.3e-47 Score=273.21 Aligned_cols=317 Identities=11% Similarity=0.074 Sum_probs=214.8 Q ss_pred Ccccchhcccccccc------ccccccchhhhhhhccCcccccccHHHHhhhHHHHH------------HHHHH--HHhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK------NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYS------------VINRI--ASDV 60 (383) Q Consensus 1 Mg~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------~i~~i--a~~i 60 (383) |+=-++...+..... ........ -...+.-+.+..+.+....+.-..++. ++..+ ++.. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~~~ 79 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGG-RAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSSVY 79 (350) T ss_pred CCccccCCCcCccccCCcchhhhcccccc-ceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhhhh Confidence 443322111100000 00000000 000111112211122221111111111 11111 1111 Q ss_pred ccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEE Q lcl|Aclame:pro 61 SSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLE 136 (383) Q Consensus 61 a~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383) .+.++.++.+- .....+|||+||.++|++ ++.+++++||||++++++. +.++|+++.++....+.+ .|+. . T Consensus 80 h~~~l~~k~n~-l~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~--~~~~-~ 154 (350) T protein:vir:11 80 LQSGLKFKRNM-LAKTFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLE--TFYQ-V 154 (350) T ss_pred hccchhhhhhh-hhhcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCC--eEEE-E Confidence 11222222221 111347999999999986 5678999999999998754 457788777776655433 2333 3 Q ss_pred ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 137 SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 137 ~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) ..++..+.|++++|||+|.+++. .+++|+||+.++..++.+..++..|..++|+||++|+++++.++...++++++++ T Consensus 155 ~~~~~~~~~~~~eVihir~~~~~--~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l 232 (350) T protein:vir:11 155 RSWKDEHEFEKGSVIQLREADIN--QEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDAL 232 (350) T ss_pred eeCCeEEEECcccEEEeCCCCCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHH Confidence 44566788999999999976543 3679999999999999999999999999999999999999998876788999999 Q ss_pred HHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH Q lcl|Aclame:pro 217 REEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ 291 (383) Q Consensus 217 ~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~ 291 (383) ++.|++..+++|+|+++++ ++|+++++++.+++|+|++ |.+++++++||++|||||.++|.....+.++++.|+ T Consensus 233 ~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~-e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~ 311 (350) T protein:vir:11 233 RTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFG-SIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISD 311 (350) T ss_pred HHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHH Confidence 9999998766899999888 4689999999999999975 999999999999999999999987766666777777 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhcCCceeee---echhh Q lcl|Aclame:pro 292 IKAT-YLANLNSYVNPIVDELRLKMNAPDLEL---DIKDM 327 (383) Q Consensus 292 ~~~~-~~~tl~p~~~~i~~~l~~~l~~~~~~f---d~~~l 327 (383) +... +..+|.|+++.|+ +++.+|+.+.++| ++.+| T Consensus 312 ~~~~f~~~~L~P~~~~ie-~ln~~l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 312 AAAVWASLELAPMQTRLQ-QVNEMIGEEVVRFAQFDAPGL 350 (350) T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcCccccccCcccccCC Confidence 6654 5679999999998 5888887765554 45555 No 103 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=3.4e-47 Score=275.36 Aligned_cols=309 Identities=12% Similarity=0.081 Sum_probs=217.3 Q ss_pred Ccccchhccccccccccccccc-hhh-hhhhcc-----C----------cccccccHHHHh----hhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSN-PAF-FTTTVG-----G----------MQLSYVSALSAL----QNTNVYSVINRIASD 59 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-----~----------~~~~~~~~~~~~----~~~~v~~~i~~ia~~ 59 (383) |.--.. ..........+.. ..| +..... . .-...++..... .++...+||..-++. T Consensus 1 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~k~n~ 77 (345) T protein:vir:37 1 MKTNVK---TDNKKGIVIAPINDRTFSLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANM 77 (345) T ss_pred CCcccc---ccchhhhcCCCceEEEeecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhhhhhH Confidence 221110 0000000000000 000 000000 0 000112221111 233334444443333 Q ss_pred hccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEE-- Q lcl|Aclame:pro 60 VSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYT-- 133 (383) Q Consensus 60 ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-- 133 (383) ++ ..-+|||.||+.+|++. +.+++++||||++++++. +.++|+++..+....+.+...+. T Consensus 78 l~-------------~~~~Pn~~~t~~~f~~~-v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~ 143 (345) T protein:vir:37 78 VS-------------ATYEGGKALSKMEMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGGYSYLMKK 143 (345) T ss_pred Hh-------------hccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCCeeEEEee Confidence 32 23379999999999754 578889999999998864 45777777766665544433322 Q ss_pred EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH Q lcl|Aclame:pro 134 VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL 213 (383) Q Consensus 134 ~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~ 213 (383) +....++....|++++|||+|.+.+ ..+++|+||+.++.+++.+..++.+|+.++|+||++|++|+..+++..++++. T Consensus 144 ~~~~~~g~~~~~~~~eViHir~~~~--~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e~~ 221 (345) T protein:vir:37 144 SLYDTAQEIYRYDAKDIIFIKLYDP--MQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEME 221 (345) T ss_pred eeeccCceEEEEccccEEEEcCCCC--CCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHH Confidence 2234456778899999999996543 33678999999999999999999999999999999999999988876788999 Q ss_pred HHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhH Q lcl|Aclame:pro 214 ESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSN 288 (383) Q Consensus 214 ~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~ 288 (383) +++++.|++.+++.|.++++++ ++|+++++++.+++++|++ +++++++++||++|||||.++|..+.++.++++ T Consensus 222 ~~lk~~~~~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~-e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~ 300 (345) T protein:vir:37 222 EEIARKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFA-NIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGD 300 (345) T ss_pred HHHHHHHHHhcCccccCceeEecCCCCccceeEEEccCChhHHHHH-HHHHHhHHHHHHHhCCCHHHhccccCCCCCccc Confidence 9999999998877776666665 4679999999999999975 999999999999999999999987776666777 Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhc---CCceeeeechhhhc Q lcl|Aclame:pro 289 IDQIKATY-LANLNSYVNPIVDELRLKM---NAPDLELDIKDMLD 329 (383) Q Consensus 289 ~e~~~~~~-~~tl~p~~~~i~~~l~~~l---~~~~~~fd~~~ll~ 329 (383) .|++...| ..+|.|+++.|++++|+.+ ....++||..+|++ T Consensus 301 ~e~~~~~f~~~~l~P~~~~ie~~ln~~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 301 PLKYREVYHYDEVMPLQEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcceEEECchhhcC Confidence 77666554 5699999999999999864 23579999999988 No 104 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=1.3e-45 Score=266.58 Aligned_cols=232 Identities=16% Similarity=0.255 Sum_probs=182.1 Q ss_pred Ccccchhccccccccccccccchhhhhhhc--cCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch------- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTV--GGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA------- 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~------- 71 (383) ||||++++++...... . ....+...+. .+.....++.+.|+++|+|++||++||++||++|+++++.. T Consensus 1 MglF~~~~~r~~~~~~-~--~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~~~~~ 77 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNE-D--DLQMMVQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR 77 (251) T ss_pred CCccccccccccCCCc-c--chhhhhhhhccccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCccccccch Confidence 9999765433221111 1 1111111111 22334457889999999999999999999999999998642 Q ss_pred -hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceeeeecCCceEEEEEEe----cCceE Q lcl|Aclame:pro 72 -TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINYLPGNMGIVYTVLES----NDRPK 142 (383) Q Consensus 72 -~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 142 (383) ..+|+.+||++||+++||+.++.+++++||||+++.++. .+++|++|.++.+..++++..++++.. .++.. T Consensus 78 ~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~g~~ 157 (251) T protein:vir:46 78 IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIE 157 (251) T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEeccCCccee Confidence 244667999999999999999999999999999998754 468899998888877665554443332 23556 Q ss_pred EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEK 222 (383) Q Consensus 143 ~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (383) +.+++++|||+|+++.+ +++|+||+.++..++.++.++++++.++|+||++|+++++.++.+.++++++++++.|++ T Consensus 158 ~~~~~~diiH~r~~~~d---g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~~~~~~ 234 (251) T protein:vir:46 158 RNVKFEDMLDIKFYSLD---GINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFPK 234 (251) T ss_pred EEECCccEEEecCcCCC---CeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHHHHHHH Confidence 79999999999986544 578999999999999999999999999999999999999999988888889999999999 Q ss_pred HhcC-cccCCceeccCCcee Q lcl|Aclame:pro 223 ANTG-DNSGRLMVLPDGFDY 241 (383) Q Consensus 223 ~~~g-~n~g~~~vl~~g~~~ 241 (383) .++| .|+|++++ |++- T Consensus 235 ~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 235 VLVELNKLGKLSY---SMNQ 251 (251) T ss_pred HhcCccccccccc---ccCC Confidence 9998 67887665 3432 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=2.4e-41 Score=243.30 Aligned_cols=206 Identities=10% Similarity=0.056 Sum_probs=164.4 Q ss_pred eeecCCceEEEEEEe----cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 123 YLPGNMGIVYTVLES----NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPA 198 (383) Q Consensus 123 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 198 (383) ++...++.++|.... .++...++++++|+|+|.+++. .+++|+||+.+++.++..+.++.+|+.++|+||++|+ T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~--~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~ 78 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPM--QQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMG 78 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCC--CCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc Confidence 333333444433322 2356788999999999976532 3678999999999999999999999999999999999 Q ss_pred eEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCH Q lcl|Aclame:pro 199 GKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPS 273 (383) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~ 273 (383) +|++.++...++++++++++.|++..++.|+++++++ ++|++|++++++++|+|++ |++++++++||++||||| T Consensus 79 gil~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfl-e~rk~~~~eIa~~fgVPp 157 (219) T protein:vir:98 79 FILYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFA-NIKNISAQDVLTSHRFPP 157 (219) T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHH-HHHHhhHHHHHHHhCCCH Confidence 9999887666789999999999987666776666666 5689999999999999975 999999999999999999 Q ss_pred HHhccccccccchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC-Cc--eeeeechhhhccC Q lcl|Aclame:pro 274 DILGGGTSTESQHSNIDQIKAT-YLANLNSYVNPIVDELRLKMN-AP--DLELDIKDMLDVD 331 (383) Q Consensus 274 ~~lg~~~~~~~~~~~~e~~~~~-~~~tl~p~~~~i~~~l~~~l~-~~--~~~fd~~~ll~~d 331 (383) ++||....++.++++.|++... +..||.||++.||++||++++ .+ +++|+-+.....+ T Consensus 158 ~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 158 GLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred HHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccEEeecCcccccCC Confidence 9999876666677777776654 456999999999999998754 33 5566544443333 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.92 E-value=1.9e-25 Score=156.13 Aligned_cols=372 Identities=13% Similarity=0.076 Sum_probs=214.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccH-HHHhhhHHHHHHHHHHHHhhccceeEeecchh--h--hh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSA-LSALQNTNVYSVINRIASDVSSAHFKTENTAT--L--NR 75 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~--~--~l 75 (383) |.+.|.+...-..... ..+..++. ++.......... ..+.+++.++++|+.+|.++-+-.+++..... . .. T Consensus 1 ~~~~D~~~~~~~~~g~---~~~~~~~~-~~~~~~~~~~~l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~d~~~~~~~~ 76 (437) T protein:vir:52 1 MKFFDGIKSLALKLGS---KQEQTYYS-PSLSLTDDLVQLEALWRDNWIANKVCIKRPEDMVRNWREIYSNDLNSKQLDL 76 (437) T ss_pred CchhhhhHhHHhcCCC---ccccceee-cCccccccHHHHHHHHHhCchhhHHhhcchHHhhcCCceEecCCCCHHHHHH Confidence 8888875332100000 00101111 111111111222 23557899999999999999999988854321 1 11 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc-------------ceEEeecCcceee--ee------cCCceEEEE Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-------------LEHIPNSDVQINY--LP------GNMGIVYTV 134 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-------------~~~~~~~~~~~~~--~~------~~~~~~~~~ 134 (383) +..--......+-+..++.+.-++|.|++++..+. ..+.++++..+.. .. .+-+..-++ T Consensus 77 ~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~p~~y 156 (437) T protein:vir:52 77 FTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFGRYSEY 156 (437) T ss_pred HHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccCcceEE Confidence 11111111234444455555569999999876532 1233333332221 11 111222233 Q ss_pred EEecCceEEEEchhheEEecccCcc-ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcC---cCCCH Q lcl|Aclame:pro 135 LESNDRPKMVLRQDQMLHFRLMPDP-QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISN---YLSDG 210 (383) Q Consensus 135 ~~~~~~~~~~~~~~~vih~r~~~~~-~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~---~~~~~ 210 (383) .+..+.....+.++.|+||.....+ ......|.|+++.+...+.....+......++.+...+ ++++++ .+.. T Consensus 157 ~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~--v~k~~~l~~~l~~- 233 (437) T protein:vir:52 157 SILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID--IFKIAGLSDKIAA- 233 (437) T ss_pred EEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ceecchHHHHhcC- Confidence 3344555678999999999753221 22235699999999999999999998888888776544 344443 2222 Q ss_pred HHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH Q lcl|Aclame:pro 211 KDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID 290 (383) Q Consensus 211 ~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e 290 (383) ...+.+.+.++......+.+++++++.+.+|+.++.+..+. .+.......+||.++|||..+|.+...+..+ +..+ T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl---~~~l~~~~~~iaaa~~iP~t~L~G~s~~Gla-sge~ 309 (437) T protein:vir:52 234 GMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGL---KDLLTEFRNAVAGAADMPVTILFGQSVSGLA-SGDE 309 (437) T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCH---HHHHHHHHHHHHHHhcCchhhhcCcCccccc-ccHH Confidence 22344555555555555567899999999999988876654 4566777889999999999887554444443 2223 Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHhhcCC---ceeeeechhhhccCHHHHH-------HHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 291 QIKATYL-------ANLNSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSILI-------NQVSNLAKSGVLGAEQA 353 (383) Q Consensus 291 ~~~~~~~-------~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~~-------~~~~~~~~~G~~t~nE~ 353 (383) +.+.+|. .-|.|.++.+.+.+-+..++ +++.|.+++|...|.++++ +++.+++++|+++++|+ T Consensus 310 D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~~g~i~~~e~ 389 (437) T protein:vir:52 310 DIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQEQQINMLNTFATAANTLIQNGVLNEYQI 389 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH Confidence 3333332 24677777777776665554 3688888888888765554 45888999999999999 Q ss_pred HHHhCCC----CccCCccccccCCCCC------CCC--------CCCC Q lcl|Aclame:pro 354 QFILTRS----GFLPDNLPEFKPLTNE------TKG--------GDDK 383 (383) Q Consensus 354 R~~~g~~----p~~~~d~~~~~~~~~~------~~g--------Gd~~ 383 (383) |+.+... .++.++........++ .+. +.+| T Consensus 390 r~~L~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (437) T protein:vir:52 390 ANELRESGLFANISAEHIEELKNADEFAGNFEEPEKMEGAQVQNSEDQ 437 (437) T ss_pred HHHHHhcCCCCCCCccccccccCCCCCCCccCCCCCCCCCCCCCCCCC Confidence 9987433 2332222111111110 000 0111 No 107 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.86 E-value=3.2e-22 Score=138.42 Aligned_cols=372 Identities=13% Similarity=0.084 Sum_probs=199.0 Q ss_pred Ccccchhccccccccccccccc-hhhhhhhccCc----cccccc---H-HHHhhhHHHHHHHHHHHHhhccceeEeecch Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSN-PAFFTTTVGGM----QLSYVS---A-LSALQNTNVYSVINRIASDVSSAHFKTENTA 71 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~---~-~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~ 71 (383) ||+|-+. +++..+ +.-+. ..+-...+... ....++ . ..+.+++.++++|+.+|+++-+-.+++.... T Consensus 1 ~~~~m~~--~~~~~~--~~D~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~ 76 (435) T protein:vir:79 1 MGVFMSD--KVKAIT--KEDGYNEIFGSKDGTFRPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVDGVK 76 (435) T ss_pred CCccccc--ccccch--hhcchhhhhcccccccccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceecCCC Confidence 9999542 211111 11111 00111111111 111112 1 2345788999999999999989888886544 Q ss_pred hhhhhhC-CCccCCHHHHHHHHHHHHHhcCCceEEEEe-cc------c-------eEEeecCcceeeee---c-----CC Q lcl|Aclame:pro 72 TLNRLES-PSSLIGRFSFWQGALMQLCLSGNDYIPLVG-QN------L-------EHIPNSDVQINYLP---G-----NM 128 (383) Q Consensus 72 ~~~l~~~-PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~-~~------~-------~~~~~~~~~~~~~~---~-----~~ 128 (383) ....++. -... ...+-+..++.+-.++|.+++++.- +. + .+.++++..+.... + -+ T Consensus 77 ~~~~~~~~~~~l-~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~~~dp~sp~fg 155 (435) T protein:vir:79 77 NEKSFKSRWDEL-RLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHERETNARSVRYG 155 (435) T ss_pred hHHHHHHHHHHh-hHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchhhccCCcccccC Confidence 3222221 2222 2233444455555689998887642 11 1 23334433332111 1 11 Q ss_pred ceEEEEEEe-cCceEEEEchhheEEecccCcc----ccCccccCcHH-HHHHHHHHHHHHHHHHHHHHHhccCCcceEEE Q lcl|Aclame:pro 129 GIVYTVLES-NDRPKMVLRQDQMLHFRLMPDP----QYRYLIGRSPL-ESLQNALNLDDKASKSNMSAMENQINPAGKLT 202 (383) Q Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~vih~r~~~~~----~~~~~~G~spi-~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~ 202 (383) ...+|.+.. ++.....+.++.|+|+.....+ ......|.||+ +.+...+.....+......++...... +++ T Consensus 156 ~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~--v~~ 233 (435) T protein:vir:79 156 EPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQA--VWK 233 (435) T ss_pred cceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc Confidence 223333322 2334567889999998643211 11234699998 688898888888888888877655432 233 Q ss_pred EcC---cCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcc Q lcl|Aclame:pro 203 ISN---YLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGG 278 (383) Q Consensus 203 ~~~---~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~ 278 (383) +++ ...+.+....+++.+...... .+.+.+++.+++.+++.++.+..++ .+........||.+.|||...|.+ T Consensus 234 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsgl---~~~~~~~~~~iaaa~~IP~t~L~G 310 (435) T protein:vir:79 234 ARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSGV---PEFLQEKIDRIVALTGIHEIIIKN 310 (435) T ss_pred chhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCCH---HHHHHHHHHHHHhhhCCCeeeecc Confidence 332 222222333344444433322 2334455556667788888766554 466777788999999999977644 Q ss_pred ccccccchhHHHHHHHHHHHHHHH----HHHHHHHHHHhh-cCCceeeeechhhhccCHHHHH-------HHHHHHHhCC Q lcl|Aclame:pro 279 GTSTESQHSNIDQIKATYLANLNS----YVNPIVDELRLK-MNAPDLELDIKDMLDVDDSILI-------NQVSNLAKSG 346 (383) Q Consensus 279 ~~~~~~~~~~~e~~~~~~~~tl~p----~~~~i~~~l~~~-l~~~~~~fd~~~ll~~d~~~~~-------~~~~~~~~~G 346 (383) ...+..+.+..+..+ .|.+.|.- .++.+.+.|-.. ...+++.|.+++|...|.++++ +++++++++| T Consensus 311 ~s~~glnstgd~d~~-~yyd~i~~~Qe~~l~p~l~~l~~li~~s~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g 389 (435) T protein:vir:79 311 KNTGGVSASQNTALE-TFYKLIDRKRVEDYKPILEFLLPFMISETEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQ 389 (435) T ss_pred CCccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcC Confidence 333333222222332 33322221 223222232222 2357788888898888876554 4577789999 Q ss_pred CcCHHHHHHHh-C---CCCccCCcc-----ccccCCCCCCCCCCCC Q lcl|Aclame:pro 347 VLGAEQAQFIL-T---RSGFLPDNL-----PEFKPLTNETKGGDDK 383 (383) Q Consensus 347 ~~t~nE~R~~~-g---~~p~~~~d~-----~~~~~~~~~~~gGd~~ 383 (383) +++++|+|+.+ . ..++.+++. +.........|||+|| T Consensus 390 ~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 390 AINLKETRDTLRSICPDLKIMDNDNIELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred CCCHHHHHHHHHHhccccCCCCcccccCCccccCCCCCCCCCCCCC Confidence 99999999876 1 223333221 1222233456899999 No 108 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.84 E-value=3.9e-21 Score=132.46 Aligned_cols=370 Identities=7% Similarity=-0.040 Sum_probs=199.6 Q ss_pred Ccccchhcccc-ccccccccccchhhhhhhccC---------cccccc---cHHHHhhhHHHHHHHHHHHHhhccceeEe Q lcl|Aclame:pro 1 MGLLTPKNFSK-RNAKNMVYPSNPAFFTTTVGG---------MQLSYV---SALSALQNTNVYSVINRIASDVSSAHFKT 67 (383) Q Consensus 1 Mg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~v~~~i~~ia~~ia~~~~~v 67 (383) +.+.-+.-... .-....+....+.+....... .....+ -...+.+++.++++|+++|+++.+-.+++ T Consensus 55 ~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i 134 (537) T protein:vir:10 55 IAMMPKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKACSQMPRDAMRKGYKI 134 (537) T ss_pred CcccccccccccchhccccccchhhhhhhccccccchhhhhccccCCccHHHHHHHHhCchhhhhhhhhhHHhhcCCcee Confidence 22221110000 000000000000000000000 000111 11234578999999999999999988887 Q ss_pred ecchh--------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEe---cc-----------------ceEEeecCc Q lcl|Aclame:pro 68 ENTAT--------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVG---QN-----------------LEHIPNSDV 119 (383) Q Consensus 68 ~~~~~--------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~---~~-----------------~~~~~~~~~ 119 (383) ..... ..+....+....+..|.+.+... .++|.+++++.- +. ..+..++|. T Consensus 135 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~-rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~ 213 (537) T protein:vir:10 135 ISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKG-RIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPY 213 (537) T ss_pred ecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhc-ccccceEEEEeecCcCCcccccccccccccccceeEEEEechh Confidence 54321 12333333444444455544444 578998887532 11 122334433 Q ss_pred ceeee------ecC-----CceEEEEEEecCceEEEEchhheEEecccCccc----cCccccCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 120 QINYL------PGN-----MGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQ----YRYLIGRSPLESLQNALNLDDKAS 184 (383) Q Consensus 120 ~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~----~~~~~G~spi~~~~~~i~~~~~~~ 184 (383) .+... .+. +...+|. + ....+.++.|+|+.....+. .....|.|.++.+...+.....+. T Consensus 214 ~~~~~~~~~~~~dp~sp~fg~P~~y~-v----~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~ 288 (537) T protein:vir:10 214 WCAPLLDAQASSNPVSMHFYEPTYWL-I----NGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTA 288 (537) T ss_pred hcccccchhhhccCCccccCCceeee-e----cCeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHH Confidence 22211 110 1111222 1 12468889999986443221 112469999999999998888888 Q ss_pred HHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-CceeEecccChhHHHHHHHHHHHHHH Q lcl|Aclame:pro 185 KSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-GFDYTQLEMKTDVFKALADNSAYSAD 263 (383) Q Consensus 185 ~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-g~~~~~l~~~~~~~~~l~e~~~~~~~ 263 (383) .....++.+....-.-+.....+.++++ +.+.++.........+++++++ +.+|+.++.+...+ .+....... T Consensus 289 ~~~~~l~~~~~~~v~k~~~~~~l~~~~~---~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~~lsgl---~~~l~~~~~ 362 (537) T protein:vir:10 289 NEGPMLAMTKRQTVLKVDAAQVLANKQQ---FDETMSWWTATRDNYQVRVVDKDNEDVVQIDTTLNDL---DKVIMNQYQ 362 (537) T ss_pred HHHHHHHHhcCCceeeechHHhhcCHHH---HHHHHHHHHhhcCCcceeEecCCCceeEEEeccCCCH---HHHHHHHHH Confidence 8888888877654433333334455443 4455555444443455777776 58888777665543 456677778 Q ss_pred HHHHHhcCCHHHh-ccccccccchhHHHHHHHHH------HHHHHHHHHHHHHHHHhhcCCc--eeeeechhhhccCHHH Q lcl|Aclame:pro 264 QISKAFGVPSDIL-GGGTSTESQHSNIDQIKATY------LANLNSYVNPIVDELRLKMNAP--DLELDIKDMLDVDDSI 334 (383) Q Consensus 264 ~Ia~~fgVp~~~l-g~~~~~~~~~~~~e~~~~~~------~~tl~p~~~~i~~~l~~~l~~~--~~~fd~~~ll~~d~~~ 334 (383) .||.+.|||..+| |....+ .+.+..+..+.++ +..|.|.++.+.+.+.+..++. ++.|.+++|...|.++ T Consensus 363 ~iAa~~~IP~t~L~G~sp~G-lnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~~~~~~i~f~pL~~~s~kE 441 (537) T protein:vir:10 363 LVCAIARTPAPKMLGTVPTG-FNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRKRIRVKVEFPPMDAPKESE 441 (537) T ss_pred HHHhhhCCCceeeccCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEeCCCCCCCHHH Confidence 8999999999865 432222 2111112222222 2347888888887777666653 6778888998888888 Q ss_pred HHH-------HHHHHHhCCCcCHHHHHHHhCCCCccCCccc------------cccCCCCCCCCCCCC Q lcl|Aclame:pro 335 LIN-------QVSNLAKSGVLGAEQAQFILTRSGFLPDNLP------------EFKPLTNETKGGDDK 383 (383) Q Consensus 335 ~~~-------~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~------------~~~~~~~~~~gGd~~ 383 (383) +++ ++++++++|++++||+|+.++.+|..+.+.. ......++.++.+++ T Consensus 442 kAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~~~ 509 (537) T protein:vir:10 442 RADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIEDQ 509 (537) T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCCCC Confidence 765 4889999999999999999987653221110 000000111111111 No 109 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.81 E-value=5.1e-20 Score=126.37 Aligned_cols=367 Identities=7% Similarity=-0.024 Sum_probs=193.8 Q ss_pred Ccccchhcccc-----------------------------------ccccccccccchhhhhhhccCccccccc-HHHHh Q lcl|Aclame:pro 1 MGLLTPKNFSK-----------------------------------RNAKNMVYPSNPAFFTTTVGGMQLSYVS-ALSAL 44 (383) Q Consensus 1 Mg~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 44 (383) |....+.-..+ ............. ...+.......... ...+. T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~-~~~~~~~~~f~gyql~alY~ 144 (862) T protein:vir:99 66 VEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEA-LQDWYLSQGFIGHQACALIA 144 (862) T ss_pred ccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchh-ccccccccCcccHHHHHHHH Confidence 11111110000 0000000000000 00000000000011 23455 Q ss_pred hhHHHHHHHHHHHHhhccceeEeecchh---------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEe---cc-- Q lcl|Aclame:pro 45 QNTNVYSVINRIASDVSSAHFKTENTAT---------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVG---QN-- 110 (383) Q Consensus 45 ~~~~v~~~i~~ia~~ia~~~~~v~~~~~---------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~---~~-- 110 (383) +++.++++|+++|+++-+-.+++..... ..+...-... ...+-+..++.+.-|+|.+++++.- ++ T Consensus 145 ~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL-~v~~~l~eair~~RLyGga~ililv~~~D~~~ 223 (862) T protein:vir:99 145 QHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEF-KVKENLIEFNRFKNVFGIRVAIFVVDSEDPDY 223 (862) T ss_pred hCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHh-hHHHHHHHHHHhcccccceEEEEEecCcCchh Confidence 7899999999999999998888864211 1111111111 1233334444545588888776431 11 Q ss_pred ---------------ceEEeecCcceeee------ecC-----CceEEEEEEecCceEEEEchhheEEecccCccc---- Q lcl|Aclame:pro 111 ---------------LEHIPNSDVQINYL------PGN-----MGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQ---- 160 (383) Q Consensus 111 ---------------~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~---- 160 (383) ..+..++|..+... .+. +...+|. . . ...+.++.|+|+.....+. T Consensus 224 LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~-I-~---g~~IH~SRliif~g~~vpd~lk~ 298 (862) T protein:vir:99 224 YEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWI-I-S---GQKYHRSHLIIARGPQPADILKP 298 (862) T ss_pred hhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeee-e-c---CeeeccceeEEecCCCchhhhhc Confidence 12333444332211 111 1111121 1 1 1357788888886432211 Q ss_pred cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcC--cCCCHHHHHHHHHHHHHHhcCcccCCceeccCC Q lcl|Aclame:pro 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISN--YLSDGKDLESAREEFEKANTGDNSGRLMVLPDG 238 (383) Q Consensus 161 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g 238 (383) .....|.|.++.+...|.....+......++.+.... +++++. .+.++ +.+.+.++....+.+..++++++.+ T Consensus 299 ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~--v~ktd~l~~l~~e---d~l~~r~~~~~~~rdN~Gi~liD~e 373 (862) T protein:vir:99 299 TYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT--AIHTDTAKAIANE---DKFIQRLMFWVRYRDNHAVKVLGTD 373 (862) T ss_pred cCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeechhHhhhccH---HHHHHHHHHHHhccCcceeEEecCC Confidence 1123599999999999999999999999888876643 333332 23232 3345555554444334568999999 Q ss_pred ceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHh-ccccccccchhHHHHHHHHHH-------HHHHHHHHHHHHH Q lcl|Aclame:pro 239 FDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDIL-GGGTSTESQHSNIDQIKATYL-------ANLNSYVNPIVDE 310 (383) Q Consensus 239 ~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~l-g~~~~~~~~~~~~e~~~~~~~-------~tl~p~~~~i~~~ 310 (383) -+|+.++.+...++ +........||.+.+||...| |....+..+.+. +..+.+|. .-|.|.++.+... T Consensus 374 Ee~e~ls~slSGL~---dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE-~D~~nYyD~I~s~QE~~L~P~LerL~~l 449 (862) T protein:vir:99 374 ETMEQFDTSLADFD---AVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGE-FETISYHEELESIQEHVYMPFLQRHYLI 449 (862) T ss_pred CceeEEecccCChH---HHHHHHHHHHHhhhCCCceeecccCcccccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99998887766543 555666788999999999865 433233222222 22232322 2377888888877 Q ss_pred HHhhcCC-ceeeeechhhhccCHHHHHHH-------HHHHHhCCCcCHHHHHHHh------CCCCccCCcccc---cc-C Q lcl|Aclame:pro 311 LRLKMNA-PDLELDIKDMLDVDDSILINQ-------VSNLAKSGVLGAEQAQFIL------TRSGFLPDNLPE---FK-P 372 (383) Q Consensus 311 l~~~l~~-~~~~fd~~~ll~~d~~~~~~~-------~~~~~~~G~~t~nE~R~~~------g~~p~~~~d~~~---~~-~ 372 (383) +...+.. +++.|.+++|...|.++++++ +++++++|+++++|+|+.+ |++.++..+... .. . T Consensus 450 i~~~lg~~~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e 529 (862) T protein:vir:99 450 SRLSLGIQHEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPE 529 (862) T ss_pred HHHhcCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcc Confidence 7665543 478888889988888877654 7789999999999999986 344333322110 00 0 Q ss_pred CC-CCCCCCC--------CC Q lcl|Aclame:pro 373 LT-NETKGGD--------DK 383 (383) Q Consensus 373 ~~-~~~~gGd--------~~ 383 (383) .. ...+.|+ ++ T Consensus 530 ~~~~~e~~g~a~~~ap~de~ 549 (862) T protein:vir:99 530 NLAAYQKAGAAQETASAKET 549 (862) T ss_pred cccccccCCccccccccccc Confidence 00 0011111 11 No 110 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.80 E-value=4.9e-20 Score=126.46 Aligned_cols=374 Identities=14% Similarity=0.047 Sum_probs=198.8 Q ss_pred Ccccchhccc--------cccccccc-------cccchhhhhhhccCccccccc-HHHHhhhHHHHHHHHHHHHhhccce Q lcl|Aclame:pro 1 MGLLTPKNFS--------KRNAKNMV-------YPSNPAFFTTTVGGMQLSYVS-ALSALQNTNVYSVINRIASDVSSAH 64 (383) Q Consensus 1 Mg~~~~~~~~--------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~~ 64 (383) +++-.-.-.. .....+.. ...+......|.......... ...+.+++.++++|+.+|+++-+-. T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~~Vd~~aed~~r~~ 112 (532) T protein:vir:94 33 LGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALLAQLPEYRTMHETPADECVRAW 112 (532) T ss_pred hhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHHHHHHHcCchhhhhhccchHHHhhCC Confidence 1110000000 00000000 000000000111111111111 2334578999999999999999888 Q ss_pred eEeecchh--------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec--c---------------------ceE Q lcl|Aclame:pro 65 FKTENTAT--------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ--N---------------------LEH 113 (383) Q Consensus 65 ~~v~~~~~--------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~--~---------------------~~~ 113 (383) +++..... ..+-..-... ...+-+..++.+-.++|.+++++.-. . ..+ T Consensus 113 ~~i~~~~~~~~~~~~~~~i~~~~~~l-~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l 191 (532) T protein:vir:94 113 GKITCSSKDELAADKATRITQKLEQY-NVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGF 191 (532) T ss_pred ceEeeCCccccchHHHHHHHHHHHhh-hHHHHHHHHHHhhhcccceEEEEEeccCCccccccccccccccccccceeeEE Confidence 88754221 1122122222 22334444455556899998875321 0 123 Q ss_pred EeecCcceeeeecC--------CceEEEEEEecCceEEEEchhheEEecccCcccc----CccccCcHHHHHHHHHHHHH Q lcl|Aclame:pro 114 IPNSDVQINYLPGN--------MGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQY----RYLIGRSPLESLQNALNLDD 181 (383) Q Consensus 114 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~----~~~~G~spi~~~~~~i~~~~ 181 (383) .+++|..+...... .+..-++.... ...+.++.|+||.....+.. ....|.|.++.+...+.... T Consensus 192 ~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~---g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~ 268 (532) T protein:vir:94 192 ATIEPMWLSPNAYNATDPTLPSFYKPDSWIATS---GKKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWL 268 (532) T ss_pred EeechheecccccccccccccccCCceeEEEcc---CeeeccceEEEecCCCchhhhccccccccccHHHHHHHHHHHHH Confidence 44444443321110 11111122221 23588999999874332211 12369999999999999888 Q ss_pred HHHHHHHHHHhccCCcceEEEEc-CcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-CceeEecccChhHHHHHHHHHH Q lcl|Aclame:pro 182 KASKSNMSAMENQINPAGKLTIS-NYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-GFDYTQLEMKTDVFKALADNSA 259 (383) Q Consensus 182 ~~~~~~~~~~~ng~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-g~~~~~l~~~~~~~~~l~e~~~ 259 (383) .+......+.......- ++.. ....+.+..+.+.+.++....+....+++++++ +.+|+.++.+..++ .+... T Consensus 269 ~t~~~~~~l~~~~~~~v--~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~~lsgl---~~~l~ 343 (532) T protein:vir:94 269 RTRQSVSDTVKQFSMTN--LATDMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNTPLSGL---DSLQA 343 (532) T ss_pred HHHHHHHHHHHhcCCce--eeechHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEecccCCH---HHHHH Confidence 88888887766654332 2222 122233455677777776655543456777775 57888887666554 45667 Q ss_pred HHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCC---ceeeeechhhhc Q lcl|Aclame:pro 260 YSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYL-------ANLNSYVNPIVDELRLKMNA---PDLELDIKDMLD 329 (383) Q Consensus 260 ~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~-------~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll~ 329 (383) .....||.+.|||..+|-+...+..+.+..+....++. .-|.|.++.+.+.+-+..++ +++.|.+++|.. T Consensus 344 ~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~~d~~~~f~pL~~ 423 (532) T protein:vir:94 344 QSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQIDPGLAWEWSPLME 423 (532) T ss_pred HHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeCCCCC Confidence 77789999999999865333222222111112222221 23678888888887766554 468888888888 Q ss_pred cCHHHHHH-------HHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCC---------------------------CC Q lcl|Aclame:pro 330 VDDSILIN-------QVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPL---------------------------TN 375 (383) Q Consensus 330 ~d~~~~~~-------~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~---------------------------~~ 375 (383) .|.+++++ ++++++++|++++||+|+.++..|..+.+....... +. T Consensus 424 ~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (532) T protein:vir:94 424 LDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNP 503 (532) T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCC Confidence 87777654 568899999999999999999887643321100000 00 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 376 ETKGGDDK 383 (383) Q Consensus 376 ~~~gGd~~ 383 (383) +.++.+++ T Consensus 504 ~~~~~~d~ 511 (532) T protein:vir:94 504 QPDSEDDQ 511 (532) T ss_pred CCCCCCCC Confidence 00111111 No 111 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.79 E-value=2.4e-19 Score=122.68 Aligned_cols=364 Identities=12% Similarity=0.043 Sum_probs=191.3 Q ss_pred CcccchhccccccccccccccchhhhhhhccCccccccc-HHHHhhhHHHHHHHHHHHHhhccceeEeecchhh-hhhhC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVS-ALSALQNTNVYSVINRIASDVSSAHFKTENTATL-NRLES 78 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~-~l~~~ 78 (383) |--.|.+-.--. ..++.. ..+.......... ...+.+++.++++|+.+|+++-+-.|++...... .+..+ T Consensus 1 ~~~~D~~~n~~~------gg~~~~--~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~~~~~~~ 72 (422) T protein:vir:10 1 MVKTDSYANIFL------GGSDGS--EIYGSLQNQAPTILASLYADNALVRRIIDTIPETALAAGFHIDGIDDEPAFWSR 72 (422) T ss_pred CccchhhHHHHc------CCCCCc--cccCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcCCccccCCCHHHHHHHH Confidence 433332210000 000000 0000011111111 1235578999999999999998888887655432 22222 Q ss_pred CCccCCHHHHHHHHHHHHHhcCCceEEEEe-cc------------c-eEEeecCcceeeee--------cCCceEEEEEE Q lcl|Aclame:pro 79 PSSLIGRFSFWQGALMQLCLSGNDYIPLVG-QN------------L-EHIPNSDVQINYLP--------GNMGIVYTVLE 136 (383) Q Consensus 79 PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~-~~------------~-~~~~~~~~~~~~~~--------~~~~~~~~~~~ 136 (383) -... ...+-+..++.+-.++|.|++++.- +. + .+.++++..+.... +-+...+|.+. T Consensus 73 ~~~l-~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P~~y~v~ 151 (422) T protein:vir:10 73 WDDL-EMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGEPLTYRIT 151 (422) T ss_pred HHHh-hHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCcceEEEEe Confidence 2222 2234444555555689999988642 11 0 22333333332211 11222333333 Q ss_pred e-cCceEEEEchhheEEecccCcc----ccCccccCcHHHH-HHHHHHHHHHHHHHHHHHHhccCCcceEEEEcC---cC Q lcl|Aclame:pro 137 S-NDRPKMVLRQDQMLHFRLMPDP----QYRYLIGRSPLES-LQNALNLDDKASKSNMSAMENQINPAGKLTISN---YL 207 (383) Q Consensus 137 ~-~~~~~~~~~~~~vih~r~~~~~----~~~~~~G~spi~~-~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~---~~ 207 (383) . .+.....+.++.|+|+.....+ .....+|.|+++. +...+.....+......++.+.... ++++++ .. T Consensus 152 ~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~--v~~~~~l~~~~ 229 (422) T protein:vir:10 152 TNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQA--VWKAKGLAELC 229 (422) T ss_pred cCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchhHHHhc Confidence 3 3334467888889998643211 1123469999975 6788888888888888877665432 233332 22 Q ss_pred CCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccch Q lcl|Aclame:pro 208 SDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQH 286 (383) Q Consensus 208 ~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~ 286 (383) .+.+......++++..... .+.+.+++.+++.+++.++.+...+ .+.......+||.+.|||...|.+...+..+. T Consensus 230 ~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl---~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glna 306 (422) T protein:vir:10 230 DDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGGI---DAFLDKKFDRIVALSGIHEIILKNKNVGGVSS 306 (422) T ss_pred CCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCCh---HHHHHHHHHHHHhhhCCCeeeeccCCcccccc Confidence 2233333334444433333 2334455666678899888777654 46677778999999999998774443443332 Q ss_pred hHHHHHHHHHH--H-----HHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHH-------HHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 287 SNIDQIKATYL--A-----NLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSIL-------INQVSNLAKSGVLGAEQ 352 (383) Q Consensus 287 ~~~e~~~~~~~--~-----tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~t~nE 352 (383) +..+..+.+|. . -|.|.++.+-+.+ .....+.|.+++|...|.+++ ++++++++++|+++++| T Consensus 307 tgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i---~~s~~~~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g~i~~~e 383 (422) T protein:vir:10 307 SQNTALETFHKLVDRKRNAELLPILEFLIPFI---VNAEEWSVEFNPLAQESSKDKAEILEKNVNSIAALIAAGAMDIDE 383 (422) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH Confidence 22233333322 1 2444444433332 235677777788887777655 45578899999999999 Q ss_pred HHHHhC----CCCccCCccccccCCC------CCCCCCC Q lcl|Aclame:pro 353 AQFILT----RSGFLPDNLPEFKPLT------NETKGGD 381 (383) Q Consensus 353 ~R~~~g----~~p~~~~d~~~~~~~~------~~~~gGd 381 (383) +|+.+- ..++.++..+...... ...+.+| T Consensus 384 ~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 422 (422) T protein:vir:10 384 ARDTLRTIAPEVKINDGSVETEVTISETSNDPLEVPTDD 422 (422) T ss_pred HHHHhhhhcccccCCCCCCccccchhhcCCCCCCCCCCC Confidence 998873 2333222211111110 0111122 No 112 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.79 E-value=8.5e-20 Score=125.12 Aligned_cols=367 Identities=13% Similarity=0.103 Sum_probs=201.1 Q ss_pred Ccccchhccccccccccccccchhhh--------------hhhccCcccccccH-HHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFF--------------TTTVGGMQLSYVSA-LSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) |+=-|.- +........-+...+. ..+.......+... ..+.+++.++++|+.+|+.+-+-.+ T Consensus 1 ~~~~~~a---~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g~ 77 (461) T protein:vir:80 1 MYSIDKA---KQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVRAGW 77 (461) T ss_pred Cccchhh---hhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhccchHHhhcCCe Confidence 4433321 1111000000011111 11111111111112 2344678889999999999988878 Q ss_pred Eeecchhh---hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec------cc-----------eEEeecCccee--- Q lcl|Aclame:pro 66 KTENTATL---NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ------NL-----------EHIPNSDVQIN--- 122 (383) Q Consensus 66 ~v~~~~~~---~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~------~~-----------~~~~~~~~~~~--- 122 (383) ++...... .+...-+....+. -+..++.+..++|.+++++.-. .. ++..+++.... T Consensus 78 ~i~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~~i~ 156 (461) T protein:vir:80 78 SLKTDNKEMKKNIESKWRKLKTKD-RFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKVT 156 (461) T ss_pred eeecCCHHHHHHHHHHHHHhhHHH-HHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEeccccccc Confidence 77543321 1222222222333 3444555556999999886421 00 11111111111 Q ss_pred ---eeec----C-CceEEEEEEe------------cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 123 ---YLPG----N-MGIVYTVLES------------NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDK 182 (383) Q Consensus 123 ---~~~~----~-~~~~~~~~~~------------~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~ 182 (383) ...+ + +...+|.+.. .+.....+.++.|+|+.+...+. ..+|.|.++.+...+..... T Consensus 157 ~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~--~~~G~S~le~~~~~l~~~~~ 234 (461) T protein:vir:80 157 QLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEG--ETKGRSIFESLYDIITVMDT 234 (461) T ss_pred hhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCc--cccCcchHHHHHHHHHHHHH Confidence 0111 1 2222333221 23345679999999998654432 45799999999999998888 Q ss_pred HHHHHHHHHhccCCcceEEEEcC--cCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHH Q lcl|Aclame:pro 183 ASKSNMSAMENQINPAGKLTISN--YLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAY 260 (383) Q Consensus 183 ~~~~~~~~~~ng~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~ 260 (383) +......+..+...+ +++.++ .+.. +....+.+.++.... ..++++++.+-+++.++.+..+. .+..+. T Consensus 235 ~~~~~~~l~~~~~~~--v~k~~~l~~~~~-~~~~~~~~~~~~~~~---~~g~~~~d~~e~~e~~~~~lsgl---~~~l~~ 305 (461) T protein:vir:80 235 SLWSVGQILYDFAFK--VYKTDDIDALNK-DDKANLTAMLDFMFR---TEALAIIKGDEQLTKESTNVSGM---KDLLDY 305 (461) T ss_pred HHHHHHHHHHHhCCC--ceecchHHhhhc-hHHHHHHHHHHHhcC---CceEEEEcCCcceEEEecCcCCH---HHHHHH Confidence 888888888776543 344443 2222 333445556655442 23578889888999888776654 467777 Q ss_pred HHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCC---------ceeeeec Q lcl|Aclame:pro 261 SADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYL-------ANLNSYVNPIVDELRLKMNA---------PDLELDI 324 (383) Q Consensus 261 ~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~-------~tl~p~~~~i~~~l~~~l~~---------~~~~fd~ 324 (383) ....||.+-+||...|.+...+..+. ..++.+.++. .-+.|+++.+.+.+-+..++ ..+.|.+ T Consensus 306 ~~~~iaa~s~iP~t~L~G~s~g~~as-ge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f 384 (461) T protein:vir:80 306 GWDYLAGAVRMPKTVLKGQEAGTLTG-AQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEF 384 (461) T ss_pred HHHHHhhhhcCCeeeeecccCCcccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEe Confidence 88899999999998765433333222 2223333321 23677777777766554332 3678888 Q ss_pred hhhhccCHHHHHH-------HHHHHHhCCCcCHHHHHHHh-CCCCccC-Cccc----cccCCCC-CCCCCCCC Q lcl|Aclame:pro 325 KDMLDVDDSILIN-------QVSNLAKSGVLGAEQAQFIL-TRSGFLP-DNLP----EFKPLTN-ETKGGDDK 383 (383) Q Consensus 325 ~~ll~~d~~~~~~-------~~~~~~~~G~~t~nE~R~~~-g~~p~~~-~d~~----~~~~~~~-~~~gGd~~ 383 (383) ++|...|.+++++ ++++++++|+++++|+|+.+ ++-++.+ +..+ ....... ..+++.+| T Consensus 385 ~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 457 (461) T protein:vir:80 385 NPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDAYAKK 457 (461) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhcccccccc Confidence 8998888877755 58889999999999999866 3333322 1111 1111111 11223222 No 113 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.78 E-value=3e-19 Score=122.13 Aligned_cols=376 Identities=8% Similarity=-0.036 Sum_probs=193.2 Q ss_pred Ccccchhcccc------cc--cc-----ccc--cccchhhhhhhccCcccc-------------cc----cHHHHhhhHH Q lcl|Aclame:pro 1 MGLLTPKNFSK------RN--AK-----NMV--YPSNPAFFTTTVGGMQLS-------------YV----SALSALQNTN 48 (383) Q Consensus 1 Mg~~~~~~~~~------~~--~~-----~~~--~~~~~~~~~~~~~~~~~~-------------~~----~~~~~~~~~~ 48 (383) -+|.......+ .- +. .+. ....+.+ ....++.... .+ -...+.+++. T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~alY~~~~l 122 (765) T protein:vir:96 44 RGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAA-KAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAIISQHWL 122 (765) T ss_pred hhcccccccCCCCCCCCcccCcccceeccccccccccchH-HHhhhccCccchhhHHHhhhcccCCccHHHHHHHHhCch Confidence 22111111100 00 00 000 0000111 1111111100 00 1123557899 Q ss_pred HHHHHHHHHHhhccceeEeecchhh------hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEe---cc------c-- Q lcl|Aclame:pro 49 VYSVINRIASDVSSAHFKTENTATL------NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVG---QN------L-- 111 (383) Q Consensus 49 v~~~i~~ia~~ia~~~~~v~~~~~~------~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~---~~------~-- 111 (383) ++++|+++|.++-+-.+++...... ..++.--......+-+..++.+.-++|.+|+++.- +. + T Consensus 123 ~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL~~ 202 (765) T protein:vir:96 123 VDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPFNP 202 (765) T ss_pred hhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccccc Confidence 9999999999998888887543211 11111111112344455555666789999887532 11 0 Q ss_pred ---------eEEeecCcceeee------ecCCceEEEEEEecCceEEEEchhheEEecccCccc----cCccccCcHHHH Q lcl|Aclame:pro 112 ---------EHIPNSDVQINYL------PGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQ----YRYLIGRSPLES 172 (383) Q Consensus 112 ---------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~----~~~~~G~spi~~ 172 (383) .+..+++..+... .+....-|+.-..-......+.++.|||+.....+. .....|.|.++. T Consensus 203 ~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~g~~IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~ 282 (765) T protein:vir:96 203 DGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIISGKKYHRSHLVVVRGPQPPDILKPTYIFGGIPLTQR 282 (765) T ss_pred cccccceeeEEEEechhhcccccchhccccccccccCcceeeeecCceeccceEEEecCCCchhhhccccCccCccHHHH Confidence 1223333322211 111111111000000112357788899986443211 112359999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHH Q lcl|Aclame:pro 173 LQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFK 252 (383) Q Consensus 173 ~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~ 252 (383) +...|.....+......++.+....-.-+.....+.+++ .+.+.++......+..++++++.+.+|+.++.+...+ T Consensus 283 ~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l~~~~---~l~~r~~~~~~~r~n~g~~~id~ee~~e~~s~~lsgl- 358 (765) T protein:vir:96 283 IYERVYAAERTANEAPLLAMSKRTSTIHVDVEKAIANED---AFNARLAFWIANRDNHGVKVIGIDETMEQFDTNLSDF- 358 (765) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeeechHhhhccHH---HHHHHHHHHHHhcCCceeEEecCCcceeEEecccCCH- Confidence 999999888888888888887664332222222333333 3445555544444345688999999999888776654 Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc-CCceeeeec Q lcl|Aclame:pro 253 ALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYL-------ANLNSYVNPIVDELRLKM-NAPDLELDI 324 (383) Q Consensus 253 ~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~-------~tl~p~~~~i~~~l~~~l-~~~~~~fd~ 324 (383) .+........||.+.+||...|-+......+.+..+..+.+|. .-|.|.++.+.+.+-+.- ..+.+.|.+ T Consensus 359 --~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s~~i~~d~~i~F 436 (765) T protein:vir:96 359 --DSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKSESIDVQLEIVW 436 (765) T ss_pred --HHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEe Confidence 4566777889999999998766433222221111112222221 235666655555544321 235788888 Q ss_pred hhhhccCHHHHHH-------HHHHHHhCCCcCHHHHHHHhCCCCccCCc-----cccccCCCCCCC------CCCCC Q lcl|Aclame:pro 325 KDMLDVDDSILIN-------QVSNLAKSGVLGAEQAQFILTRSGFLPDN-----LPEFKPLTNETK------GGDDK 383 (383) Q Consensus 325 ~~ll~~d~~~~~~-------~~~~~~~~G~~t~nE~R~~~g~~p~~~~d-----~~~~~~~~~~~~------gGd~~ 383 (383) ++|...|.+++++ ++++++++|++++||+|+.+..+|.-+.+ .........+.. +|.++ T Consensus 437 npL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~ 513 (765) T protein:vir:96 437 NPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQS 513 (765) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCccc Confidence 8998888877665 48889999999999999998766532211 111111111111 11011 No 114 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.74 E-value=1.3e-18 Score=118.70 Aligned_cols=368 Identities=11% Similarity=0.042 Sum_probs=193.2 Q ss_pred CcccchhccccccccccccccchhhhhhhccCccccccc-HHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVS-ALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESP 79 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~P 79 (383) |..|+.=.-. .........- ......+...+- ...+.+++.++++|+.+|+++-+-.+++........+..- T Consensus 1 ~~~~~~d~~~-----~~~~~~~~~~--~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~~~~~~~ 73 (427) T protein:vir:10 1 MKIVKHDGYN-----DIFNGGADGS--PKPFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGFKMSGVKDEKEFKSL 73 (427) T ss_pred CCccccchHH-----HHhhcCCCCc--ccCccccCchHHHHHHHHcCchhhhhhccchHHhhcCCccccCccHHHHHHHH Confidence 6655431000 0000000000 000011111111 2345578899999999999999988888764433322221 Q ss_pred CccCCHHHHHHHHHHHHHhcCCceEEEEe-cc-------------ceEEeecCcceeeee--------cCCceEEEEEEe Q lcl|Aclame:pro 80 SSLIGRFSFWQGALMQLCLSGNDYIPLVG-QN-------------LEHIPNSDVQINYLP--------GNMGIVYTVLES 137 (383) Q Consensus 80 N~~~s~~~f~~~~~~~l~l~G~a~~~~~~-~~-------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 137 (383) -......+-+..++.+..++|.+++++.- +. ..+.++++..+.... +-+...+|.+.. T Consensus 74 ~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v~~ 153 (427) T protein:vir:10 74 WDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKVSP 153 (427) T ss_pred HHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCcceEEEEec Confidence 11222334445555556689999987632 11 123334433322111 112233333322 Q ss_pred -cCceEEEEchhheEEecccCccc----cCccccCcHHH-HHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcC---cCC Q lcl|Aclame:pro 138 -NDRPKMVLRQDQMLHFRLMPDPQ----YRYLIGRSPLE-SLQNALNLDDKASKSNMSAMENQINPAGKLTISN---YLS 208 (383) Q Consensus 138 -~~~~~~~~~~~~vih~r~~~~~~----~~~~~G~spi~-~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~---~~~ 208 (383) .+.....+.++.|+|+.....+. ....+|.|++. ++...+.....+......++.+.... ++++++ .+. T Consensus 154 ~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~--v~k~~~l~~~~~ 231 (427) T protein:vir:10 154 GDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA--VWKVKGLAEMCD 231 (427) T ss_pred CCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchhHHHHhc Confidence 23344688899999986433211 12346999985 57787888888888877777665432 233332 111 Q ss_pred CHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchh Q lcl|Aclame:pro 209 DGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHS 287 (383) Q Consensus 209 ~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~ 287 (383) +.+......+.+...... .+.+.+++.+.+.+++.++.+...+ .+........||.+.|||...|.+...+..+.+ T Consensus 232 ~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl---~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnst 308 (427) T protein:vir:10 232 DDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISGV---PEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSAS 308 (427) T ss_pred CccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCCh---HHHHHHHHHHHHhhhCCCeeeeccCCccccccc Confidence 222222233333333222 2345566666778888888776654 456777788999999999987744333333222 Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHH-------HHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 288 NIDQIKATYL-------ANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILI-------NQVSNLAKSGVLGAEQA 353 (383) Q Consensus 288 ~~e~~~~~~~-------~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~-------~~~~~~~~~G~~t~nE~ 353 (383) ..+..+.+|. .-|.|.++.+-+.+ ...+.+.|.+++|...+.++++ +++++++++|+++++|+ T Consensus 309 gd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i---~~s~~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e~ 385 (427) T protein:vir:10 309 QNTALETFYKLVDRKREEDYRPLLEFLLPFI---VDEEEWSIEFEPLSVPSKKEESEITKNNVESVTKAITEQIIDLEEA 385 (427) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH Confidence 2223332322 12455544443332 2346777778888877776654 56788999999999999 Q ss_pred HHHh----CCCCccCCcccc-----ccCCCCCC--CCCCCC Q lcl|Aclame:pro 354 QFIL----TRSGFLPDNLPE-----FKPLTNET--KGGDDK 383 (383) Q Consensus 354 R~~~----g~~p~~~~d~~~-----~~~~~~~~--~gGd~~ 383 (383) |+.+ +.+++.+++... ......|. ++.+++ T Consensus 386 r~~L~~~~~~~~~~~~~~~~~e~~~~~~e~~p~~~e~~~d~ 426 (427) T protein:vir:10 386 RDTLRSIAPEFKLKDGNNINIREPEETTEPEPGLGEKLEDE 426 (427) T ss_pred HHHHHhhhccccCCCCccccccccchhcCCCCCCCCCCCCC Confidence 9877 455555443211 11111111 111222 No 115 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.70 E-value=1.7e-16 Score=106.98 Aligned_cols=362 Identities=12% Similarity=0.007 Sum_probs=205.0 Q ss_pred ccccccccc-cccccchhhhhhhccCccc------------ccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhh- Q lcl|Aclame:pro 8 NFSKRNAKN-MVYPSNPAFFTTTVGGMQL------------SYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATL- 73 (383) Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~- 73 (383) -.++.-... .+......++..+.++... +.-.-+..++.+.|.+|++.+...|.+++|.|...... T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~~~~ 80 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEILSDAQVKTVWGQRQLAVVSREWKVEAGGDRP 80 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhcCCceEEcCCCCh Confidence 111100000 0000001111111111110 01112445678999999999999999999999743211 Q ss_pred ------hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-eE-----EeecCcceeeeecCCceEEEEEEecCce Q lcl|Aclame:pro 74 ------NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-EH-----IPNSDVQINYLPGNMGIVYTVLESNDRP 141 (383) Q Consensus 74 ------~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (383) ..+..--....+.+++..+.. .+++|.+++++++... +. +...|.+......+++..+. ...+... T Consensus 81 ~~~~~ae~v~~~l~~~~~~~~l~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~~~l~~~-~~~~~~~ 158 (488) T protein:vir:99 81 IDQAAAEHLEQQLQRVGWDRVTSKMLF-GVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQDGGLRLL-TPNNMFE 158 (488) T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHh-hhhhcceeEEEEEeecCCeeeEeeeeeecccceeecCCCceEEe-ccCCCCC Confidence 111111122356777777764 5789999999887431 11 12222222222333333332 2222223 Q ss_pred EEEEch--hheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHH Q lcl|Aclame:pro 142 KMVLRQ--DQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREE 219 (383) Q Consensus 142 ~~~~~~--~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~ 219 (383) ...++. .-++|... ...+ ..+|.|.+..+.-.........++...+.+..+.|-.+.+.+....++++++++.+. T Consensus 159 g~~lp~~~~~i~~~~~-~~~g--~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~~l~~a 235 (488) T protein:vir:99 159 GEPCPAPYFWHFSTGA-DNDD--EPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKAKLLAA 235 (488) T ss_pred ccccccCceEEEEeec-CCCC--CcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHHHHHHH Confidence 344543 33455432 2222 357999999999999999999999999999999998887776544456677777777 Q ss_pred HHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 220 FEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (383) Q Consensus 220 ~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~t 299 (383) +.+... ...+|++.|++++-++.+......+.+..++.-++|+.+.-= +.+.. +.++.+++..+-.......- T Consensus 236 v~~~~~----~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~iLG--qtlts-~~~~Gs~a~~~vh~~v~~d~ 308 (488) T protein:vir:99 236 LHAIQT----DSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVGLG--QVAST-QGTPGRLGNDDLQADVRLDL 308 (488) T ss_pred HHHHhc----CcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHHhh--hhhcc-cccccchhhHHHHHHHHHHH Confidence 666532 236777888887766643222222356777888888877311 22221 22223445555555555566 Q ss_pred HHHHHHHHHHHHHhhcCC------------ceeeeechhhhccCHHHHHHHHHHHHhC-CC-cCHHHHHHHhCCCCccCC Q lcl|Aclame:pro 300 LNSYVNPIVDELRLKMNA------------PDLELDIKDMLDVDDSILINQVSNLAKS-GV-LGAEQAQFILTRSGFLPD 365 (383) Q Consensus 300 l~p~~~~i~~~l~~~l~~------------~~~~fd~~~ll~~d~~~~~~~~~~~~~~-G~-~t~nE~R~~~g~~p~~~~ 365 (383) +...++.+++.+|+.|+. +.+.|+.. -..|++++++++.++++. |+ ++..++|+.+|+++-..+ T Consensus 309 ~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~--e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~~~~~ 386 (488) T protein:vir:99 309 VKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIE--EPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVEVESTQ 386 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCC--CcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCCCcccc Confidence 788889999999887632 24555544 347889999999999996 74 888899999998865443 Q ss_pred ccccc-cCCCCCCCCCCCC Q lcl|Aclame:pro 366 NLPEF-KPLTNETKGGDDK 383 (383) Q Consensus 366 d~~~~-~~~~~~~~gGd~~ 383 (383) +.... .......++..+. T Consensus 387 ~~~~~~~~~~~~~~~~~~~ 405 (488) T protein:vir:99 387 AEATAPTPSTEFAEGDQPS 405 (488) T ss_pred cccccCCCcccCCCCCCCC Confidence 32111 1111111111111 No 116 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.65 E-value=1.3e-14 Score=96.80 Aligned_cols=364 Identities=12% Similarity=0.030 Sum_probs=202.3 Q ss_pred Cc-ccchhccccccccc---cccccchhhhhhhccCcccccccH----------------------HHHh-hhHHHHHHH Q lcl|Aclame:pro 1 MG-LLTPKNFSKRNAKN---MVYPSNPAFFTTTVGGMQLSYVSA----------------------LSAL-QNTNVYSVI 53 (383) Q Consensus 1 Mg-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~v~~~i 53 (383) |+ |++. ..++-.... ...+.. ..........+.+.+++ +..+ +.+.|.+|+ T Consensus 1 ~~~~~d~-~g~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l 78 (528) T protein:vir:10 1 MAAIVDI-YGNPLRTQQLRKQQTAHL-AGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEM 78 (528) T ss_pred CCeeECC-CCCccccccccchhhhhh-hhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHH Confidence 65 3443 222211111 111110 01011111112222221 1111 578899999 Q ss_pred HHHHHhhccceeEeecch----hhh----hhhC-CCccCCHHHHHHHHHHHHHhcCCceEEEEeccc----eE--EeecC Q lcl|Aclame:pro 54 NRIASDVSSAHFKTENTA----TLN----RLES-PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL----EH--IPNSD 118 (383) Q Consensus 54 ~~ia~~ia~~~~~v~~~~----~~~----l~~~-PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~----~~--~~~~~ 118 (383) +.+...|.+++|.|.... ... .+.. -+..-.+.+++..+.. .+++|.+.+++++... .+ +...+ T Consensus 79 ~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~ld-a~~~G~s~~Ei~w~~~~g~~~~~~~~~r~ 157 (528) T protein:vir:10 79 SKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCMD-GVGHGYSAIELDWSLQGREWLPQAFDHRP 157 (528) T ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeeeec Confidence 999999999999997431 111 1111 1111123444444433 4679999998886431 11 12222 Q ss_pred cceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 119 VQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPA 198 (383) Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 198 (383) .++......++..+.. ..+......+++...+.+++....+ ..+|.|.+..+.-.........++...+.+..+.|- T Consensus 158 ~~~f~~~~~~~~~l~~-~~~~~~g~~l~~~k~iv~~~~~~~g--~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (528) T protein:vir:10 158 QSWFQLNPDDQDELRL-RDNSIAGEVLQPFGWIMHKPRSRSG--YVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPI 234 (528) T ss_pred ccceeeccCCCcEEec-cCCCCCceeecCCCeEEEeecCCCC--CccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCe Confidence 2333223333333322 2222334556666544445433333 357999999999999999999999999999999998 Q ss_pred eEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcc Q lcl|Aclame:pro 199 GKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGG 278 (383) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~ 278 (383) -+.+.+... ++++++.+.+.+.+... + ..+|++.|++++-++.+....+.+.+..++.-++|+.+. ||. T Consensus 235 ~igky~~~a-~~~ek~~L~~al~~i~~--~--~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------LGq 303 (528) T protein:vir:10 235 RLGKYPPGT-PDEEKVTLLRAVTGLGH--A--AAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAI------LGG 303 (528) T ss_pred EEEecCCCC-CHHHHHHHHHHHHHHhh--C--cEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHH------hhh Confidence 888877654 45666777777766542 2 357788888877766543333334577788888887765 443 Q ss_pred cc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------C--------ceeeeechhhhccCHHHHH Q lcl|Aclame:pro 279 GT------STESQHSNIDQIKATYLANLNSYVNPIVDELRLKMN--------A--------PDLELDIKDMLDVDDSILI 336 (383) Q Consensus 279 ~~------~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~--------~--------~~~~fd~~~ll~~d~~~~~ 336 (383) +- +...+++..+-......+-+.-.++.+++.+|+.|+ + +.++|+... ..|+++++ T Consensus 304 tlTs~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e--~eDl~~~a 381 (528) T protein:vir:10 304 TLTSQTSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKD--RADLAAMA 381 (528) T ss_pred hhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCC--cccHHHHH Confidence 22 112334433434445555667788888999988662 1 234555443 57889999 Q ss_pred HHHHHHHhCCC-cCHHHHHHHhCCCCccCCccccccCCC------CCCC-------------CCCCC Q lcl|Aclame:pro 337 NQVSNLAKSGV-LGAEQAQFILTRSGFLPDNLPEFKPLT------NETK-------------GGDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~-~t~nE~R~~~g~~p~~~~d~~~~~~~~------~~~~-------------gGd~~ 383 (383) +.+.++++.|+ ++..++|+.+|++.-..++........ +... ..+++ T Consensus 382 ~~~~~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (528) T protein:vir:10 382 TSLPPLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQ 448 (528) T ss_pred HHHHHHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCccccccccccccccccccccc Confidence 99999999998 999999999998543222211100000 0000 00111 No 117 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.63 E-value=1.6e-14 Score=96.15 Aligned_cols=368 Identities=12% Similarity=0.049 Sum_probs=210.4 Q ss_pred cchhccccccc-ccccccc---ch--hhhhhhccCcccc---cc-cHHHHh-hhHHHHHHHHHHHHhhccceeEeecchh Q lcl|Aclame:pro 4 LTPKNFSKRNA-KNMVYPS---NP--AFFTTTVGGMQLS---YV-SALSAL-QNTNVYSVINRIASDVSSAHFKTENTAT 72 (383) Q Consensus 4 ~~~~~~~~~~~-~~~~~~~---~~--~~~~~~~~~~~~~---~~-~~~~~~-~~~~v~~~i~~ia~~ia~~~~~v~~~~~ 72 (383) +.-....+... +.....+ .+ ..+....-..... .+ ..+..+ +.+.|.+|++.+...|.+++|+|..... T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk~av~~~~w~v~p~~~ 80 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAVYSRMDNEDSRVTSLLEAISLPIRSTPWRIRANGA 80 (469) T ss_pred CCCcccCCCCccchhhhhhcccccchhhccccccccccccccchHHHHHHHhhChHHHHHHHHHHHHHhcCCceEecCCC Confidence 11111111000 0000000 00 0000000000000 01 123443 5899999999999999999999975432 Q ss_pred h--------hhhhCCC-------------ccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----eE-----EeecCcc- Q lcl|Aclame:pro 73 L--------NRLESPS-------------SLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----EH-----IPNSDVQ- 120 (383) Q Consensus 73 ~--------~l~~~PN-------------~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----~~-----~~~~~~~- 120 (383) . ..+..+. -..++.+++..++.+.+.+|-++.++++... +. +++.|.. T Consensus 81 ~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~~rp~~~ 160 (469) T protein:vir:10 81 SDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLAPRPQWT 160 (469) T ss_pred CHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeeeecCccc Confidence 1 1122211 1236777888878777789999999887531 11 1122211 Q ss_pred --eeeeecCCceEEEEEE-----------ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 121 --INYLPGNMGIVYTVLE-----------SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSN 187 (383) Q Consensus 121 --~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~ 187 (383) ......+++....... ..+.....+++...|++++....+ ..+|.|.+..+.-.........++. T Consensus 161 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g--~p~g~gLlr~~~~~~~fK~~~~~~w 238 (469) T protein:vir:10 161 ISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPG--QWQGKSILRSAYKHWLLKDKLLRIE 238 (469) T ss_pred ceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCC--CcccchhHHHHHHHHHHHHHHHHHH Confidence 1122223333322211 112223557777766666543333 3579999999999999999999999 Q ss_pred HHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 188 MSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISK 267 (383) Q Consensus 188 ~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~ 267 (383) ..+.+.-+.|--+.+.+... ++++++.+.+...+...|.++ .++++.|++++.++.+.....+ .+..++.-++|+. T Consensus 239 ~~f~EryG~P~~vgky~~~a-~~~ek~~l~~a~~~~~~g~~a--~~iip~~~~ie~~ea~g~~~~~-~~li~~~d~~Isk 314 (469) T protein:vir:10 239 AATAERNGMGIPVGTASSAT-DEDEVRKMAALARSVRGGINA--GVGLAQGQILELLGVSGNLPDI-RRAIEGHDRSIAL 314 (469) T ss_pred HHHHHHcCCcceEEecCCCC-CHHHHHHHHHHHHHHhcCCce--EEEccCCceEEEeecCCCchHH-HHHHHHHHHHHHH Confidence 99999988888877766554 556777888888877656544 5678889898887766554444 5778888888877 Q ss_pred HhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------C-----ceeeeechhhhccCHHH Q lcl|Aclame:pro 268 AFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMN--------A-----PDLELDIKDMLDVDDSI 334 (383) Q Consensus 268 ~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~--------~-----~~~~fd~~~ll~~d~~~ 334 (383) +.-=.. |.. ++...+++..+.....+..-+.-.++.+++.+|+.|+ + +.++|+ . ...+.+. T Consensus 315 ~iLG~t--lTs-~~~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~--~-~e~~~~~ 388 (469) T protein:vir:10 315 SGLAHF--LNL-DGKGGSYALASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFD--P-IGSRQDL 388 (469) T ss_pred HHhccc--ccc-cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEec--C-CCCcHHH Confidence 663211 111 1122344444555555666677888889999988663 1 234443 3 2356778 Q ss_pred HHHHHHHHHhCCC-----cCHHHHHHHhCCCCccCCcccccc--C--CCCCCCCCCCC Q lcl|Aclame:pro 335 LINQVSNLAKSGV-----LGAEQAQFILTRSGFLPDNLPEFK--P--LTNETKGGDDK 383 (383) Q Consensus 335 ~~~~~~~~~~~G~-----~t~nE~R~~~g~~p~~~~d~~~~~--~--~~~~~~gGd~~ 383 (383) .++.++++++.|+ .+.+.+|+.+|+++-..++..... . ..++..+++.. T Consensus 389 ~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (469) T protein:vir:10 389 TAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVPNQSAAPART 446 (469) T ss_pred HHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccCCCCCcccccc Confidence 8999999999998 456789999998754333221100 0 01111111111 No 118 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.61 E-value=4.7e-14 Score=93.66 Aligned_cols=362 Identities=12% Similarity=0.050 Sum_probs=202.8 Q ss_pred Cc-ccchhcccccc---ccccccccchhhhhhhccCcccccccH----------------------HHHh-hhHHHHHHH Q lcl|Aclame:pro 1 MG-LLTPKNFSKRN---AKNMVYPSNPAFFTTTVGGMQLSYVSA----------------------LSAL-QNTNVYSVI 53 (383) Q Consensus 1 Mg-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~v~~~i 53 (383) |+ |++.. .++-. .+....+.... ........+.+.+++ +..+ +.+.|.+|+ T Consensus 1 ~~~~~d~~-g~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l 78 (526) T protein:vir:99 1 MAQIVDVY-GNPIRTQQLREPQTSRLAG-LAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) T ss_pred CCeeECCC-CCccccccccchhhhhhhh-hhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHH Confidence 54 33432 22111 01111111100 001111111111111 1112 578999999 Q ss_pred HHHHHhhccceeEeecchh---------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------eEEeec Q lcl|Aclame:pro 54 NRIASDVSSAHFKTENTAT---------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------EHIPNS 117 (383) Q Consensus 54 ~~ia~~ia~~~~~v~~~~~---------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------~~~~~~ 117 (383) ..+...|.+++|.|..... ..+...-+....+.+++..+.. ...+|-+.+++++... .+.+.+ T Consensus 79 ~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-a~~~G~s~~Eivw~~~~g~~~~~~l~~r~ 157 (526) T protein:vir:99 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHRP 157 (526) T ss_pred HHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHH-hhhhcceeEEEEEeecCCceeEEEeeeec Confidence 9999999999999974321 1111111222235566666654 5689999999886431 122223 Q ss_pred CcceeeeecCCceEEEEEEecCceEEEEchhh-eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 118 DVQINYLPGNMGIVYTVLESNDRPKMVLRQDQ-MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) +..+.....+.. .... ..+......+++.. |+|. +....+ ..+|.|.+..+.-.........++...+.+..+. T Consensus 158 ~~~f~~~~~~~~-~l~~-~~~~~~g~~l~~~k~i~~~-~~~~~g--~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~ 232 (526) T protein:vir:99 158 QSWFQLNPEDQN-ELRL-RDNSPAGEALQPFGWIIHR-PRARSG--YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGL 232 (526) T ss_pred ccceeeccCCCc-EEEe-cCCCCCceeecCCCeEEEe-ecCCcC--CccccchHHHHHHHHHHHHhhHHHHHHHHHHcCC Confidence 333333333332 2222 22333345566654 4554 322222 3579999999999999999999999999999999 Q ss_pred cceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHh Q lcl|Aclame:pro 197 PAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDIL 276 (383) Q Consensus 197 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~l 276 (383) |--+.+.+... ++++++.+.+.+.+... + ..++++.|++++-++.+....+.+.+..++.-++|+.++ | T Consensus 233 P~~igky~~~a-~~~ek~~L~~av~~i~~--d--~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------L 301 (526) T protein:vir:99 233 PIRLGKYPPGT-ADEEKATLLRAVTGLGH--A--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV------L 301 (526) T ss_pred ceEEEecCCCC-CHHHHHHHHHHHHHHhh--C--cEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH------h Confidence 98888876554 45666777777776532 2 367888888887766543332334577788888888765 4 Q ss_pred ccccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------------ceeeeechhhhccCHHH Q lcl|Aclame:pro 277 GGGTS------TESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----------------PDLELDIKDMLDVDDSI 334 (383) Q Consensus 277 g~~~~------~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----------------~~~~fd~~~ll~~d~~~ 334 (383) |.+-. ...+++..+-......+-+.-..+.+++.||+.|+. ++++|+.. -..|+++ T Consensus 302 GqtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~--e~eDl~~ 379 (526) T protein:vir:99 302 GGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR--EQADITS 379 (526) T ss_pred hhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCC--CcccHHH Confidence 43221 122333334344444455677888888889886631 23555544 3578899 Q ss_pred HHHHHHHHHhCCC-cCHHHHHHHhCCCCccCCcccc---ccCCCCCCCCC---------------CCC Q lcl|Aclame:pro 335 LINQVSNLAKSGV-LGAEQAQFILTRSGFLPDNLPE---FKPLTNETKGG---------------DDK 383 (383) Q Consensus 335 ~~~~~~~~~~~G~-~t~nE~R~~~g~~p~~~~d~~~---~~~~~~~~~gG---------------d~~ 383 (383) +++.+.++++.|+ ++..++|+.+|++.-.+++... ......+...| +.+ T Consensus 380 ~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) T protein:vir:99 380 MAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) T ss_pred HHHHHHHHHhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcchh Confidence 9999999999997 9999999999985432222100 00000000000 000 No 119 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.60 E-value=1.1e-13 Score=91.60 Aligned_cols=363 Identities=13% Similarity=0.075 Sum_probs=203.9 Q ss_pred Cc-ccchhccccccc--cccccccchhhhhhhccCcccccccH----------------------HHHh-hhHHHHHHHH Q lcl|Aclame:pro 1 MG-LLTPKNFSKRNA--KNMVYPSNPAFFTTTVGGMQLSYVSA----------------------LSAL-QNTNVYSVIN 54 (383) Q Consensus 1 Mg-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~v~~~i~ 54 (383) |+ |++...+..+.. +...++.... ........+.+.+++ +..+ +.+.|.+|+. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~ 79 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAG-LAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMS 79 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhh-hhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHH Confidence 54 444322211100 0011110000 001111111111111 1122 5789999999 Q ss_pred HHHHhhccceeEeecch----hh-----hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------eEEeecC Q lcl|Aclame:pro 55 RIASDVSSAHFKTENTA----TL-----NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------EHIPNSD 118 (383) Q Consensus 55 ~ia~~ia~~~~~v~~~~----~~-----~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------~~~~~~~ 118 (383) .+...|.+++|.|.... .. .+...-+...++.+++..+.. ...+|-+..++++... .+.+.++ T Consensus 80 ~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 158 (526) T protein:vir:79 80 KRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHHRPQ 158 (526) T ss_pred HHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeeeecc Confidence 99999999999996431 11 111111222235556665555 4579999999887431 1222223 Q ss_pred cceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 119 VQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPA 198 (383) Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~ 198 (383) ..+.....+.. ... ...+......+++...+.+++....+ ..+|.+.+..+.-.........++...+.+.-+.|- T Consensus 159 ~~F~~~~~~~~-~l~-~~~~~~~g~~l~~~k~iv~~~~~~~g--~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~ 234 (526) T protein:vir:79 159 SWFQLNPEDQN-ELR-LRDNSPAGEALQPFGWIIHRPRARSG--YVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) T ss_pred cceEeccCCCc-EEE-ecCCCCCceeecCCceEEEeecCCcC--CccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCce Confidence 22333333332 222 22233334556666544444433222 357999999999999888899999999999999898 Q ss_pred eEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhcc Q lcl|Aclame:pro 199 GKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGG 278 (383) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~ 278 (383) -+.+.+... ++++++++.+.+.+... ...++++.|++++-++.+....+.+.+..++.-++|+.+. ||. T Consensus 235 ~igky~~~a-~~~ek~~L~~av~~i~~----da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------LGq 303 (526) T protein:vir:79 235 RLGKYPPGT-ADEEKATLLRAVTGLGH----AAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV------LGG 303 (526) T ss_pred EEEecCCCC-CHHHHHHHHHHHHHHhc----CcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH------hhh Confidence 888876554 44666677777776532 2367888888887777543332334577788888887764 443 Q ss_pred ccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------------ceeeeechhhhccCHHHHH Q lcl|Aclame:pro 279 GTS------TESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----------------PDLELDIKDMLDVDDSILI 336 (383) Q Consensus 279 ~~~------~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----------------~~~~fd~~~ll~~d~~~~~ 336 (383) +-. ...+++..+-......+-+.-.++.+++.||+.|+. ++++|+.. -..|+++++ T Consensus 304 tlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~--e~eDl~~~a 381 (526) T protein:vir:79 304 TLTSTTSQSGGGAFALGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLR--EQADITSMA 381 (526) T ss_pred hhccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCC--CcccHHHHH Confidence 222 122344444444455555677888999999886631 23555544 357889999 Q ss_pred HHHHHHHhCCC-cCHHHHHHHhCCCCccCCcccccc----CCCCCCCCC--------------CCC Q lcl|Aclame:pro 337 NQVSNLAKSGV-LGAEQAQFILTRSGFLPDNLPEFK----PLTNETKGG--------------DDK 383 (383) Q Consensus 337 ~~~~~~~~~G~-~t~nE~R~~~g~~p~~~~d~~~~~----~~~~~~~gG--------------d~~ 383 (383) +.+.++++.|+ ++..++|+.+|++. |..+.+... ....+...+ +++ T Consensus 382 ~~~~~L~~~G~~i~~~~i~e~~gip~-~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (526) T protein:vir:79 382 QSIPALVNVGLEIPSAWVYDKLGIPQ-PAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGDQ 446 (526) T ss_pred HHHHHHHhCCCcCCHHHHHHHhCCCC-CCCchhhccccCCccccccccccccccccccccccCchh Confidence 99999999997 89999999999843 322221111 110000001 111 No 120 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.59 E-value=2.9e-15 Score=100.28 Aligned_cols=355 Identities=10% Similarity=0.044 Sum_probs=199.7 Q ss_pred Cc--ccch-hccccccccccccccchhhhhhhcc---Cc---cccc---cc-HHHHh-hhHHHHHHHHHHHHhhccceeE Q lcl|Aclame:pro 1 MG--LLTP-KNFSKRNAKNMVYPSNPAFFTTTVG---GM---QLSY---VS-ALSAL-QNTNVYSVINRIASDVSSAHFK 66 (383) Q Consensus 1 Mg--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~---~~-~~~~~-~~~~v~~~i~~ia~~ia~~~~~ 66 (383) |+ .-+. .....++. .+..........+.. .. .... .+ .+..+ +.+.|.+|++.+...|.+++|. T Consensus 1 ~~~~~~~~p~~~~~~~~--~~~~~~~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~ 78 (446) T protein:vir:98 1 MNMEVRNAPTPAIRRRT--IYAMEHLGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGP 78 (446) T ss_pred CcccccCCCchhhhhhh--hhccccchhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCce Confidence 22 2110 00000000 000000010000000 00 0000 01 12333 5899999999999999999999 Q ss_pred eecchh------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------------eEEeecCcceeeeecC Q lcl|Aclame:pro 67 TENTAT------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------------EHIPNSDVQINYLPGN 127 (383) Q Consensus 67 v~~~~~------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 127 (383) |..... ...+... ..++....+.+.+.+|-++.++++... ..+.+.+..+....++ T Consensus 79 V~p~~~~~a~~v~~~l~~~-----~~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~~~~~~ 153 (446) T protein:vir:98 79 YQHGDKRIKKFIDDQLRNR-----AKTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLIANDNG 153 (446) T ss_pred ecCccHHHHHHHHHHHhhc-----CchhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccccceeeeccCC Confidence 975331 1122221 124455557788889999999887421 1122223332221111 Q ss_pred Cce------EEE------------------EEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 128 MGI------VYT------------------VLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKA 183 (383) Q Consensus 128 ~~~------~~~------------------~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~ 183 (383) .-. ... ......+....+|.+..+|+++....+ ..+|.|.+..+.-........ T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~--~p~G~gLlr~~~w~~~fK~~~ 231 (446) T protein:vir:98 154 RIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGN--NPWGTSCLTSVLDYSIFKRAF 231 (446) T ss_pred ccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCC--CccccchHHHHHHHHHHHHhh Confidence 000 000 000111223457788888887654333 358999999999999999999 Q ss_pred HHHHHHHHhccCCcceEEEEcCcCCCH-----HHH---HHHHHHHHHHh-cCc-ccCCce---eccCCceeEecccChhH Q lcl|Aclame:pro 184 SKSNMSAMENQINPAGKLTISNYLSDG-----KDL---ESAREEFEKAN-TGD-NSGRLM---VLPDGFDYTQLEMKTDV 250 (383) Q Consensus 184 ~~~~~~~~~ng~~p~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~-~g~-n~g~~~---vl~~g~~~~~l~~~~~~ 250 (383) .++...+.+.-+.|--+.+.+...+++ +.. +...+.+-+.. ... +++.++ +++.|++++-++..... T Consensus 232 ~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~~ 311 (446) T protein:vir:98 232 RDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNNF 311 (446) T ss_pred HHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccccCC Confidence 999999999999998888876544321 111 12222233333 222 222222 23889998877654432 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------------ Q lcl|Aclame:pro 251 FKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAP------------ 318 (383) Q Consensus 251 ~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~~------------ 318 (383) .....+..++.-++|+.+.....-.+|...+...+++..+.....+.+-+....+.+++.+|+.|+.. T Consensus 312 ~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~~~~ 391 (446) T protein:vir:98 312 SDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPALYP 391 (446) T ss_pred hhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc Confidence 22235777888899999887765555544443344554555555556667888899999999877322 Q ss_pred ------eeeeechhhhccCHHHHHHHHHHHHhCCCcCH---HHHHHHhCCCCccCCc Q lcl|Aclame:pro 319 ------DLELDIKDMLDVDDSILINQVSNLAKSGVLGA---EQAQFILTRSGFLPDN 366 (383) Q Consensus 319 ------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~---nE~R~~~g~~p~~~~d 366 (383) +++|++.+ ..|++..++++.++++.|+.++ +.+|+.+|+|+-.+.- T Consensus 392 ~~~~~~~~~~~~~e--~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 392 LASNTGYITRLPGR--ATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred cccccccceeccCC--hhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 23444332 4688999999999999998775 4599999865433222 No 121 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.56 E-value=2.1e-13 Score=90.04 Aligned_cols=361 Identities=11% Similarity=0.022 Sum_probs=203.5 Q ss_pred Ccccchhcccccc--c-c--cccccc-chhhhhhhccC-cc----------cccccHHHHhhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MGLLTPKNFSKRN--A-K--NMVYPS-NPAFFTTTVGG-MQ----------LSYVSALSALQNTNVYSVINRIASDVSSA 63 (383) Q Consensus 1 Mg~~~~~~~~~~~--~-~--~~~~~~-~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 63 (383) =+|++.-....+. + + ...... ...+.....++ .+ .+.-.-+..++++.|.+|++.+...|.++ T Consensus 3 ~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~~~~~~~~y~~m~~D~~i~s~l~~Rk~av~~~ 82 (491) T protein:vir:79 3 KGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAVKAL 82 (491) T ss_pred CeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhCC Confidence 2444432111110 0 0 000000 00000000000 00 01111244567899999999999999999 Q ss_pred eeEeecchhh--------hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------eEEeecCcceeeeecCC Q lcl|Aclame:pro 64 HFKTENTATL--------NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------EHIPNSDVQINYLPGNM 128 (383) Q Consensus 64 ~~~v~~~~~~--------~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 128 (383) +|.|...... .++.+ +.+.+++..+. +...+|.+.+++++... .+.+.++..+. ....+ T Consensus 83 ~w~i~~~~~~~~~a~~i~e~l~~----~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~-~d~~~ 156 (491) T protein:vir:79 83 EWGLDRGKAKSRVAKSIADVFAD----LDLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFV-YDPEN 156 (491) T ss_pred CcEEecCCCCHHHHHHHHHHHhc----CCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeeccccee-eccCC Confidence 9999753321 22333 34566666664 45689999999877431 12222222222 22333 Q ss_pred ceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC Q lcl|Aclame:pro 129 GIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS 208 (383) Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~ 208 (383) +..+ ....+......+++...+++++....+ ..+|.|.+..+.-.........++...+.+..+.|-.+.+.+... T Consensus 157 ~l~l-~~~~~~~~g~~lp~~k~i~~~~~~~~g--~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~a- 232 (491) T protein:vir:79 157 QLRF-RSKEHWVQGEELPARKFLVPRQEATYL--NPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSA- 232 (491) T ss_pred ceEE-eecCCCCCceeecCCCeEEEEecCCCC--CcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCC- Confidence 3333 223333445677777777777544333 357999999999999999999999999999999998888876554 Q ss_pred CHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccC--hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccc--ccc Q lcl|Aclame:pro 209 DGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMK--TDVFKALADNSAYSADQISKAFGVPSDILGGGTS--TES 284 (383) Q Consensus 209 ~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~--~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~--~~~ 284 (383) ++++++.+.+.+.+.. .+ ..+|++.|++++-+..+ ....+...+..++.-++|+.+. ||.+.. ++. T Consensus 233 ~~~ek~~l~~al~~~~--~~--a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LGqtlTt~~~g 302 (491) T protein:vir:79 233 SDAETNLLLDRLEDMV--QD--AVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------LGQNQTTEATS 302 (491) T ss_pred CHHHHHHHHHHHHHHh--cC--eEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------hhhhhccCccc Confidence 4456666666666653 22 35778888777766543 1222223466777777887755 443211 223 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CceeeeechhhhccCHHHHHHHHHHHHhCCC-cCHHHH Q lcl|Aclame:pro 285 QHSNIDQIKATYLANLNSYVNPIVDELRLKMN----------APDLELDIKDMLDVDDSILINQVSNLAKSGV-LGAEQA 353 (383) Q Consensus 285 ~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~----------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~-~t~nE~ 353 (383) +++..+........-+.-..+.+++.+|+ |+ ....+|.+...- .+.+.+++.++++++.|+ ++.+++ T Consensus 303 s~a~~~vh~~v~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~e-e~~~~~a~~~~~L~~~G~~i~~~~~ 380 (491) T protein:vir:79 303 TRASAQAGLEVTDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQE-QVDEIQAGRDEKLTRAGARFTPAYF 380 (491) T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCcC-chhHHHHHHHHHHHhCCCccCHHHH Confidence 34444444444445566777888888875 42 124455554421 233568899999999996 899999 Q ss_pred HHHhCCCCccCCccccccCCCCCC-------CCCCCC Q lcl|Aclame:pro 354 QFILTRSGFLPDNLPEFKPLTNET-------KGGDDK 383 (383) Q Consensus 354 R~~~g~~p~~~~d~~~~~~~~~~~-------~gGd~~ 383 (383) |+.+|+++-..++.+......+.. ..+.++ T Consensus 381 ~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 417 (491) T protein:vir:79 381 KRAYNLQDGDLDERPLPVSAVDAVGAASFAEFEAPDQ 417 (491) T ss_pred HHHhCCCCCCCCccccCcCcccccccccccccCCCCC Confidence 999998754333322211111100 011111 No 122 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.54 E-value=3.4e-14 Score=94.43 Aligned_cols=374 Identities=10% Similarity=-0.017 Sum_probs=192.6 Q ss_pred Ccccchhccc---cc-----cccc------cccccchhhhhhhccCcccc-cc----------cHHHHhhhHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFS---KR-----NAKN------MVYPSNPAFFTTTVGGMQLS-YV----------SALSALQNTNVYSVINR 55 (383) Q Consensus 1 Mg~~~~~~~~---~~-----~~~~------~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~v~~~i~~ 55 (383) |+|+||...- +. ..+. ....+. ....+....... .+ +.+-+..+|.+.+||+. T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r--~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~ 78 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTR--THKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDK 78 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCccc--ccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 9999985221 11 0010 011110 001111111100 01 12223357888999986 Q ss_pred HHH-hhcc--ceeEee--cch----------hhhh----hhC--CCccCCHHHHHHHHHHHHHhcCCceEEEEec----- Q lcl|Aclame:pro 56 IAS-DVSS--AHFKTE--NTA----------TLNR----LES--PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----- 109 (383) Q Consensus 56 ia~-~ia~--~~~~v~--~~~----------~~~l----~~~--PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----- 109 (383) +.+ .|++ +.+... ... ...+ .+. .+-.++.+++...++..++..|++|+.+.+. T Consensus 79 ~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~ 158 (502) T protein:vir:79 79 LEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSL 158 (502) T ss_pred HHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCcc Confidence 655 4433 222111 000 0001 111 3345789999999999999999999987542 Q ss_pred --------cceEEeecCcceee-----------eecCCceEEEEEEec------CceEEEEchhheEEecccCccccCcc Q lcl|Aclame:pro 110 --------NLEHIPNSDVQINY-----------LPGNMGIVYTVLESN------DRPKMVLRQDQMLHFRLMPDPQYRYL 164 (383) Q Consensus 110 --------~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------~~~~~~~~~~~vih~r~~~~~~~~~~ 164 (383) .++++.++...... ....+..+.|.+... ......+++++|+|+.... ..... T Consensus 159 ~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~--r~gQ~ 236 (502) T protein:vir:79 159 TPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVR--RLHQM 236 (502) T ss_pred CCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeeccc--CCccc Confidence 12334443222110 111122233333221 2334679999999997533 33467 Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCce-eccCCceeEe Q lcl|Aclame:pro 165 IGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLM-VLPDGFDYTQ 243 (383) Q Consensus 165 ~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~-vl~~g~~~~~ 243 (383) +|+|.+..+...+.-............+-.+...++|+.+...... .+..-..-......-..|.++ .|..|.+++. T Consensus 237 RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~--~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~ 314 (502) T protein:vir:79 237 RGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYE--PDGNGSKENERELTIQPGIIYDDLKPGEEIGM 314 (502) T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccc--cccCCCCCccccccccCCccccccCCCceeee Confidence 8999999998888777776666666666667677777765422110 000000000000111235444 5889999998 Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-----------HHHH-HHHHHHHHH-HHH Q lcl|Aclame:pro 244 LEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-----------TYLA-NLNSYVNPI-VDE 310 (383) Q Consensus 244 l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-----------~~~~-tl~p~~~~i-~~~ 310 (383) .+.+.....+ .+..+...+.||+.+|||.+.|....+. +||..-+... ++.. .+.|+.+.+ +++ T Consensus 315 ~~p~~p~~~~-~~f~~~~lr~iaaglGi~ye~lt~D~s~--nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a 391 (502) T protein:vir:79 315 VKSDRPNPNL-ETFRNGQLRAVAAGSRLSFSSTARNYNG--TYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQA 391 (502) T ss_pred eCCCCCCCCH-HHHHHHHHHHHHhhcCCCHHHHhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8866433344 5788888999999999999998765543 4444322211 1111 223333321 222 Q ss_pred HHhhcCC--c--------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCc------------------ Q lcl|Aclame:pro 311 LRLKMNA--P--------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGF------------------ 362 (383) Q Consensus 311 l~~~l~~--~--------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~------------------ 362 (383) +-.-.+. . ...+-.-.....|+..-+++...++++|+.|.-|+-...|.++- T Consensus 392 ~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl 471 (502) T protein:vir:79 392 VASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKLDL 471 (502) T ss_pred HHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC Confidence 2111111 1 11222223334599999999999999999999998888886651 Q ss_pred cCCcccccc--------CCCCCCCCCCCC Q lcl|Aclame:pro 363 LPDNLPEFK--------PLTNETKGGDDK 383 (383) Q Consensus 363 ~~~d~~~~~--------~~~~~~~gGd~~ 383 (383) +-.-.|... ....+.++++++ T Consensus 472 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 500 (502) T protein:vir:79 472 VFDTDPASDKGGSSAATKRQEPQHTDDQS 500 (502) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 110001110 011122222222 No 123 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.54 E-value=5.7e-13 Score=87.69 Aligned_cols=365 Identities=12% Similarity=0.038 Sum_probs=201.9 Q ss_pred Cc-ccchhcccccccc--ccccccc----hhhhhhhccCccccc------------cc------HHHHhhhHHHHHHHHH Q lcl|Aclame:pro 1 MG-LLTPKNFSKRNAK--NMVYPSN----PAFFTTTVGGMQLSY------------VS------ALSALQNTNVYSVINR 55 (383) Q Consensus 1 Mg-~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~------------~~------~~~~~~~~~v~~~i~~ 55 (383) |+ |++...+.-+... ....+.. ..+...+..+.+... +. .+...+.+.|.+|+.. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 54 4443222111000 0011100 011111111111000 00 1112367899999999 Q ss_pred HHHhhccceeEeecch----hh-----hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------eEEeecCc Q lcl|Aclame:pro 56 IASDVSSAHFKTENTA----TL-----NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------EHIPNSDV 119 (383) Q Consensus 56 ia~~ia~~~~~v~~~~----~~-----~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------~~~~~~~~ 119 (383) +...|.+++|.|.... .. .+...-+....+.+++..+.. ...+|-+.+++++... .+.+.++. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~lld-A~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~ 159 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAGD-AILKGYSMQEIEWGWLGKMRVPVALHHRDPA 159 (512) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-hhhhcceeeeeEeeeeCCceeeeeeeeeccc Confidence 9999999999996321 11 111111111235566666654 5689999998877421 12222232 Q ss_pred ceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcce Q lcl|Aclame:pro 120 QINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAG 199 (383) Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~ 199 (383) .+....++...... ...+.....+++...+.+++....+ ..+|.+.+..+.-.........++...+.+.-+.|-. T Consensus 160 ~f~~~~~~~~~lr~--~~~~~~G~~l~~~k~i~~~~~~~~g--~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (512) T protein:vir:19 160 LFCANPDNLNELRL--RDASYHGLELQPFGWFMHRAKSRTG--YVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMR 235 (512) T ss_pred cceeccCCCcEEEe--cCCCCCceeecCCceEEEeccCCCC--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee Confidence 22333333332222 1222334456666554444433222 3579999999999999999999999999999998887 Q ss_pred EEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccc Q lcl|Aclame:pro 200 KLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG 279 (383) Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~ 279 (383) +.+.+... ++++++++.+.+.+... ...++++.|++++-++.+....+.+.+..++..++|+.+. ||.+ T Consensus 236 igky~~~a-~~~ek~~L~~al~~~~~----~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~i------LGqt 304 (512) T protein:vir:19 236 VGKYPTGS-TNREKATLMQAVMDIGR----RAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAI------LGGT 304 (512) T ss_pred EEecCCCC-CHHHHHHHHHHHHHHhh----CcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHH------hhhh Confidence 77776544 44666777777776532 2367788888887666543322333577888888898773 4433 Q ss_pred c----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------------ceeeeechhhhccCHHHHHHHH Q lcl|Aclame:pro 280 T----STESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----------------PDLELDIKDMLDVDDSILINQV 339 (383) Q Consensus 280 ~----~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----------------~~~~fd~~~ll~~d~~~~~~~~ 339 (383) - +++.+++..+-.......-+....+.+++.+|+.|+. ++++|+... ..|++..++.+ T Consensus 305 lTs~~g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e--~eDl~~~a~~~ 382 (512) T protein:vir:19 305 LTTEAGDKGARSLGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSE--AGDITALSDAI 382 (512) T ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCC--hhhHHHHHHHH Confidence 2 2222344444455555556778889999999987632 245665443 46888888888 Q ss_pred HHHHhCCCcCHHHHHHHhCCCCccCCc-cccccCCCCCCCC-------CCCC Q lcl|Aclame:pro 340 SNLAKSGVLGAEQAQFILTRSGFLPDN-LPEFKPLTNETKG-------GDDK 383 (383) Q Consensus 340 ~~~~~~G~~t~nE~R~~~g~~p~~~~d-~~~~~~~~~~~~g-------Gd~~ 383 (383) .++...--++..++|+.+|++--..++ .........+..+ .+.. T Consensus 383 ~~l~~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (512) T protein:vir:19 383 PKLAAGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQKEAALSAEDI 434 (512) T ss_pred HHHhcCCCCCHHHHHHHhCCCCCCCccccccCCCccccccccccccccccCC Confidence 888743478999999999975322222 1111111111100 0000 No 124 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.54 E-value=4.8e-13 Score=88.12 Aligned_cols=362 Identities=11% Similarity=0.017 Sum_probs=203.5 Q ss_pred Ccccchhccccc--c-ccc--cccccchhhhhhhccCcc------------cccccHHHHhhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MGLLTPKNFSKR--N-AKN--MVYPSNPAFFTTTVGGMQ------------LSYVSALSALQNTNVYSVINRIASDVSSA 63 (383) Q Consensus 1 Mg~~~~~~~~~~--~-~~~--~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 63 (383) =+|++.-..... . .+. ........+...+..+.. .+.---+..++.+.|.+|++.+...|.++ T Consensus 3 ~~i~~~~g~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~~D~~i~s~l~~Rk~av~~~ 82 (491) T protein:vir:10 3 KGLWVSPTEFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAVKAL 82 (491) T ss_pred CceeCCCCCccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhcCCCHHHHHHHhhChHHHHHHHHHHHHHhCC Confidence 244443211110 0 000 000000000000000000 01111234567899999999999999999 Q ss_pred eeEeecchh--------hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-eE-----EeecCcceeeeecCCc Q lcl|Aclame:pro 64 HFKTENTAT--------LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-EH-----IPNSDVQINYLPGNMG 129 (383) Q Consensus 64 ~~~v~~~~~--------~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 129 (383) +|.|..... ..++.+ ..+.+++..+. +..++|.+..++++... +. +...|.+......+++ T Consensus 83 ~w~i~~~~~~~~~~e~v~e~l~~----~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~~~ 157 (491) T protein:vir:10 83 EWGLDRGKAKSRVAKSIADVFAD----LDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYDPENQ 157 (491) T ss_pred CcEEecCCCCHHHHHHHHHHHhc----CCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccceeeccCCc Confidence 999974321 123333 34677777776 45789999999887432 11 1122222222233334 Q ss_pred eEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCC Q lcl|Aclame:pro 130 IVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSD 209 (383) Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~ 209 (383) ..+. ....+.....+++...+++++-...+ ..+|.|.+..+.-.........++...+.+.-+.|--+.+.+...+ T Consensus 158 l~~~-~~~~~~~g~~l~~~k~i~~~~~~~~~--~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~- 233 (491) T protein:vir:10 158 LRFR-SKDHWMQGEELPARKFLVPRQEATYL--NPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSAS- 233 (491) T ss_pred eEEe-cCCCCCCcceecCCCEEEEEecCCCC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCC- Confidence 3332 22233444567777777666533333 3579999999999999999999999999999999988888766544 Q ss_pred HHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccC--hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccc--cccc Q lcl|Aclame:pro 210 GKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMK--TDVFKALADNSAYSADQISKAFGVPSDILGGGTS--TESQ 285 (383) Q Consensus 210 ~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~--~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~--~~~~ 285 (383) +++++++.+.+.+... + ..++++.|++++-++.+ ....+.+.+..++.-++|+.+. ||.+.. ++.+ T Consensus 234 ~~ek~~l~~al~~~~~--~--a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LGqtlTt~~~gs 303 (491) T protein:vir:10 234 DGEKNLLLDCLEDMVQ--D--AVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIAL------LGQNQTTEATST 303 (491) T ss_pred HHHHHHHHHHHHHHhc--C--cEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHH------hhhhcccCcccc Confidence 4566667777776532 2 36778888887766543 2222323566777777787663 443211 2233 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------C--ceeeeechhhhccCHHHHHHHHHHHHhCCC-cCHHHHH Q lcl|Aclame:pro 286 HSNIDQIKATYLANLNSYVNPIVDELRLKMN--------A--PDLELDIKDMLDVDDSILINQVSNLAKSGV-LGAEQAQ 354 (383) Q Consensus 286 ~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~--------~--~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~-~t~nE~R 354 (383) ++..+........-+.-..+.+++.+|+ |+ + ...+|.+... ..+.+.+++.+.++++.|+ ++..++| T Consensus 304 ~a~~~vh~~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~-~e~~~~~a~~~~~L~~~G~~i~~~~i~ 381 (491) T protein:vir:10 304 RASAQAGLEVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQ-EQVDEIQAGRDQKLTQAGARFTPAYFK 381 (491) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCc-CchhHHHHHHHHHHHhCCCcCCHHHHH Confidence 4444444444444566677778888875 32 1 2334444332 2345778999999999996 8999999 Q ss_pred HHhCCCCccCCccccccCCCCCC-------CCCCCC Q lcl|Aclame:pro 355 FILTRSGFLPDNLPEFKPLTNET-------KGGDDK 383 (383) Q Consensus 355 ~~~g~~p~~~~d~~~~~~~~~~~-------~gGd~~ 383 (383) +.+|++.-..+..+......++. ..+.++ T Consensus 382 e~~Gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (491) T protein:vir:10 382 RAYNLQDGDLDERPLPVSAVDTVGAASFAEFEAPDQ 417 (491) T ss_pred HHhCCCCCCcCccccccCCCCCcccccccccCCCCC Confidence 99998754333322211111110 011111 No 125 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.49 E-value=5.8e-13 Score=87.67 Aligned_cols=371 Identities=14% Similarity=0.075 Sum_probs=203.3 Q ss_pred Ccccchhccccccccccccccch--------hhhhhhccCccc-----------ccccHHHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNP--------AFFTTTVGGMQL-----------SYVSALSALQNTNVYSVINRIASDVS 61 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~i~~ia~~ia 61 (383) |.--.+.-..-........+... .+.....++... ..-..+..++.+.|.+|++.+...|. T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~Rk~av~ 80 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNYIFGRIR 80 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHHHHHHHh Confidence 43322211100000001111000 000101111110 00012445678899999999999999 Q ss_pred cceeEeecchhh-----------hhhhCCCcc---CCHHHHHHHHHHHHHhcCCceEEEEecc--ceEEee------cCc Q lcl|Aclame:pro 62 SAHFKTENTATL-----------NRLESPSSL---IGRFSFWQGALMQLCLSGNDYIPLVGQN--LEHIPN------SDV 119 (383) Q Consensus 62 ~~~~~v~~~~~~-----------~l~~~PN~~---~s~~~f~~~~~~~l~l~G~a~~~~~~~~--~~~~~~------~~~ 119 (383) +++|.|...... ..+..++.. .++.+++..+.. ..++|-+++++++.. .+.+.+ ++. T Consensus 81 ~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~ld-a~~~G~s~~Eivw~~~~~g~~~~~~l~~r~~~ 159 (448) T protein:vir:79 81 SAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYEN-AYIYGMAAGEIVLTLGADGKLILDKIVPIHPF 159 (448) T ss_pred cCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHH-hhhhcceeEEEEeeecCCCceecccccccCCc Confidence 999999632211 123333322 344555555444 468999999988742 122211 111 Q ss_pred --ceeeeecCCceEEEEEEe------cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 120 --QINYLPGNMGIVYTVLES------NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAM 191 (383) Q Consensus 120 --~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~ 191 (383) +......+++..+..... .+.....+|..-++|+.+ ...+ ..+|.+.+..+.-.........++...+. T Consensus 160 ~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~~~g--~p~g~gLlr~~~w~~~fK~~~~~~w~~f~ 236 (448) T protein:vir:79 160 NIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLH-NDDG--SFTGQSALRAAVPHWLAKRALILLINHGL 236 (448) T ss_pred cccceeeecCCceEEeecCCcccccccCCCccccccceEEEEec-CccC--CcccchhHHHHHHHHHHHHHHHHHHHHHH Confidence 122233333333322111 111234567777888754 3223 35799999999999999999999999999 Q ss_pred hccCCcceEEEEcCcCC-CHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 192 ENQINPAGKLTISNYLS-DGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFG 270 (383) Q Consensus 192 ~ng~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fg 270 (383) +.-+.|--+.+.+...+ ++++++.+.+...+...|.++ .+|++.|++++-++......++ .+..++.-++|+.+.- T Consensus 237 E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a--~~iiP~~~~ie~~ea~~~~~~~-~~~i~~~d~~Isk~iL 313 (448) T protein:vir:79 237 ERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRH--GIILPDDWKFDTVDLKSAMPDA-IPYLTYHDAGIARALG 313 (448) T ss_pred HHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCce--EEEecCCceEEEEecCCCcccH-HHHHHHHHHHHHHHHh Confidence 99998888877765433 456677777777766555554 4678888888877765544444 3677777788877652 Q ss_pred CCHHHhccccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC-------------ceeeeechhhhccCHHHHH Q lcl|Aclame:pro 271 VPSDILGGGTSTESQHSNIDQ-IKATYLANLNSYVNPIVDELRLKMNA-------------PDLELDIKDMLDVDDSILI 336 (383) Q Consensus 271 Vp~~~lg~~~~~~~~~~~~e~-~~~~~~~tl~p~~~~i~~~l~~~l~~-------------~~~~fd~~~ll~~d~~~~~ 336 (383) = ..+... .+..+++...+ ......+.+.-.++.+++.+|+.|+. +.+.|+.. -..|+++.+ T Consensus 314 G--qtlTs~-~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~~~--e~~Dl~~~a 388 (448) T protein:vir:79 314 I--DFNTVQ-LNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFEME--ERNDFSAAA 388 (448) T ss_pred h--hhhccc-cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEecCC--ChHHHHHHH Confidence 2 222211 11112222211 12233345667888888888886632 24566544 346888899 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCC-----CCCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETK-----GGDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~-----gGd~~ 383 (383) +.+.+++..+-..-+-+|+.+|.+.-.+++.+.......+.. -+|++ T Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 440 (448) T protein:vir:79 389 NLMGMLINAVKDSEDIPTELKALIDALPSKMRRALGVVDEVREAVRQPADSR 440 (448) T ss_pred HHhhhhhccchhhHHHHHHhhcCCCCCCCccccccCCCCcccccccCCcccc Confidence 999999987755555578877776433333333222222211 22333 No 126 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.48 E-value=1.1e-12 Score=86.13 Aligned_cols=361 Identities=14% Similarity=0.077 Sum_probs=200.0 Q ss_pred Ccccchhccccccccc---cccccc--------hhhhhhhccCcc-----------cccccHHHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN---MVYPSN--------PAFFTTTVGGMQ-----------LSYVSALSALQNTNVYSVINRIAS 58 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~i~~ia~ 58 (383) |.-=++ ++++... ...+.. ..+......+.. ...--.+..+..+.|.+|+..+.. T Consensus 1 m~kk~~---k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~Rk~ 77 (448) T protein:vir:77 1 MAKRGR---KPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNYIFG 77 (448) T ss_pred CCCCCC---CCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHHHHH Confidence 433222 2211100 000000 000000000000 001112445678899999999999 Q ss_pred hhccceeEeecchhh-----------hhhhCCC---ccCCHHHHHHHHHHHHHhcCCceEEEEecc--ceEE------ee Q lcl|Aclame:pro 59 DVSSAHFKTENTATL-----------NRLESPS---SLIGRFSFWQGALMQLCLSGNDYIPLVGQN--LEHI------PN 116 (383) Q Consensus 59 ~ia~~~~~v~~~~~~-----------~l~~~PN---~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--~~~~------~~ 116 (383) .|.+++|.|...... ..+..+. ...++.+++..+. +.+.+|-+.+++++.. .+.+ +. T Consensus 78 av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~l-da~~~G~s~~Eivw~~~~dg~~~~~~l~~r 156 (448) T protein:vir:77 78 RIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIYGMAAGEIVLTLGADGKLILDKIVPI 156 (448) T ss_pred HHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHH-HhhhhcceeEEEEEeecCCCceeecccccc Confidence 999999999642211 1222221 2335667777774 5679999999887742 1111 11 Q ss_pred cC--cceeeeecCCceEEEEEEec------CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 117 SD--VQINYLPGNMGIVYTVLESN------DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNM 188 (383) Q Consensus 117 ~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~ 188 (383) ++ .+......+++..+...... +.....+|..-++|.++ ...+ ..+|.|.+..+.-.........++.. T Consensus 157 ~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~-~~~g--~p~g~gLlr~~~w~~~fK~~~~~~w~ 233 (448) T protein:vir:77 157 HPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLH-NDDG--SFTGQSALRAAVPHWLAKRALILLIN 233 (448) T ss_pred CCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEec-CCcC--CcccchHHHHHHHHHHHHHhhHHHHH Confidence 11 12233333333333221111 11234567778888764 2223 35799999999999888899999999 Q ss_pred HHHhccCCcceEEEEcCcCC-CHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 189 SAMENQINPAGKLTISNYLS-DGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISK 267 (383) Q Consensus 189 ~~~~ng~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~ 267 (383) .+.+.-+.|--+.+.+...+ ++++++.+.+...+...|.++ .++++.|++++-++.+....++ .+..++.-++|+. T Consensus 234 ~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a--~~iiP~g~~ie~~ea~~~~~~~-~~~i~~~d~~Isk 310 (448) T protein:vir:77 234 HGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRH--GIILPDDWKFDTVDLKSAMPDA-IPYLTYHDAGIAR 310 (448) T ss_pred HHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCce--EEEecCCceEEEEecCCCccCH-HHHHHHHHHHHHH Confidence 99999998888888765433 456777777777776555444 4678888888777665444444 3677777788887 Q ss_pred HhcCCHHHhccccccccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC-------------ceeeeechhhhccCHH Q lcl|Aclame:pro 268 AFGVPSDILGGGTSTESQHSNIDQI-KATYLANLNSYVNPIVDELRLKMNA-------------PDLELDIKDMLDVDDS 333 (383) Q Consensus 268 ~fgVp~~~lg~~~~~~~~~~~~e~~-~~~~~~tl~p~~~~i~~~l~~~l~~-------------~~~~fd~~~ll~~d~~ 333 (383) +..-. .|....++ .+++...+. .....+.+.-.++.|++.+|+.|+. +.+.|+..+ ..|++ T Consensus 311 ~iLGq--tlTs~~~~-g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~e--~eDl~ 385 (448) T protein:vir:77 311 ALGID--FNTVQLNM-GVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFEMEE--RNDFS 385 (448) T ss_pred HHhcc--cccccccc-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCCC--hhhHH Confidence 76332 22211111 122222222 2333445677888888888886631 246666544 36888 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 334 ILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 334 ~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +.++.+.+++ +-+|+.+|++.-.++..+......++..+-+++ T Consensus 386 ~~a~~~~~l~-------~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 428 (448) T protein:vir:77 386 AAANLMGMLI-------NAVKDSEDIPTELKALIDALPSKMRRALGVVDE 428 (448) T ss_pred HHHHHhHHHH-------HHHHHHhcCCccCCcCCCCCchhcccccCCCCC Confidence 8899888886 458888887542222221111122222333333 No 127 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.39 E-value=1.5e-12 Score=85.41 Aligned_cols=374 Identities=11% Similarity=0.000 Sum_probs=195.1 Q ss_pred Ccccchhccccc----cc-cc--------cccccchhhhhhhccCcccccc----------cHHHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKR----NA-KN--------MVYPSNPAFFTTTVGGMQLSYV----------SALSALQNTNVYSVINRIA 57 (383) Q Consensus 1 Mg~~~~~~~~~~----~~-~~--------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~i~~ia 57 (383) |+++++...... .+ +. ........|............+ +.+-+..++.+.++|+.+. T Consensus 8 ~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 87 (505) T protein:vir:96 8 PSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQLLK 87 (505) T ss_pred cchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 899988644210 00 00 0111111111001111110101 1122335788899998665 Q ss_pred H-hhccceeEeecc----------h--------hhhhhhCCC----ccCCHHHHHHHHHHHHHhcCCceEEEEec----- Q lcl|Aclame:pro 58 S-DVSSAHFKTENT----------A--------TLNRLESPS----SLIGRFSFWQGALMQLCLSGNDYIPLVGQ----- 109 (383) Q Consensus 58 ~-~ia~~~~~v~~~----------~--------~~~l~~~PN----~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----- 109 (383) + .|++--+...-. . .......+| -.++.+++...++..++..|++|+..... T Consensus 88 ~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~~ 167 (505) T protein:vir:96 88 NNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPNKW 167 (505) T ss_pred HHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCCCc Confidence 4 554322222111 0 111223344 45789999999999999999999987653 Q ss_pred --cceEEeecCcceeee--------------ecC-CceEEEEEEec------------CceEEEEchhheEEecccCccc Q lcl|Aclame:pro 110 --NLEHIPNSDVQINYL--------------PGN-MGIVYTVLESN------------DRPKMVLRQDQMLHFRLMPDPQ 160 (383) Q Consensus 110 --~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~------------~~~~~~~~~~~vih~r~~~~~~ 160 (383) .++++.++....... .+. +..+.|.+... ......+++++|+|+... .. T Consensus 168 ~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~--~r 245 (505) T protein:vir:96 168 GYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVP--WR 245 (505) T ss_pred ceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcc--cC Confidence 233333333221110 111 22223333211 122345889999999743 33 Q ss_pred cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCce Q lcl|Aclame:pro 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFD 240 (383) Q Consensus 161 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~ 240 (383) ....+|+|.+..+...+.-............+=.+...++|+.+....++...+. .......-..|.+..|..|.+ T Consensus 246 ~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~----~~~~~~~l~pG~i~~L~pGe~ 321 (505) T protein:vir:96 246 PHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDD----QGEIVEEVEAGTYQLLPYGIR 321 (505) T ss_pred CccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccc----cCccccccCCceeeecCCCCe Confidence 4467899999988888876666666666666666666777776543222111110 011111123466888999999 Q ss_pred eEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH-----------HHHHH-HHHHHHHH-H Q lcl|Aclame:pro 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK-----------ATYLA-NLNSYVNP-I 307 (383) Q Consensus 241 ~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~-----------~~~~~-tl~p~~~~-i 307 (383) ++.++.+-....+ .+..+...+.||+.+|||.+.|.... ++.+||..-+.. ..+.. .+.|+.+. + T Consensus 322 i~~~~~~~p~~~~-~~f~~~~lr~iaaglgi~ye~lt~D~-s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l 399 (505) T protein:vir:96 322 FKEHKIDHPHTNF-GAFVKSSLRGVAAGMGPAYNRLAHDL-EGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLI 399 (505) T ss_pred eeeeCCCCCCCCH-HHHHHHHHHHHHhhcCCCHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9988877444454 58889999999999999999886533 223333332211 11221 23444333 2 Q ss_pred HHHHHhhcC-Cc--------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC----------------- Q lcl|Aclame:pro 308 VDELRLKMN-AP--------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSG----------------- 361 (383) Q Consensus 308 ~~~l~~~l~-~~--------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p----------------- 361 (383) ++++-.-.+ .+ ...+-.-.....|+...+++...++++|+.|.-|+=...|.++ T Consensus 400 ~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~ 479 (505) T protein:vir:96 400 SMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQLMRDK 479 (505) T ss_pred HHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc Confidence 222221111 11 1222222333459999999999999999999998877777665 Q ss_pred -ccCCccc----cccCCCCCCCCCCC Q lcl|Aclame:pro 362 -FLPDNLP----EFKPLTNETKGGDD 382 (383) Q Consensus 362 -~~~~d~~----~~~~~~~~~~gGd~ 382 (383) +.+...+ .......+...+|| T Consensus 480 Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 480 GVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 1111110 01111112223344 No 128 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.39 E-value=5.9e-13 Score=87.63 Aligned_cols=373 Identities=12% Similarity=-0.025 Sum_probs=189.1 Q ss_pred Ccccchhccccc--c------ccc------ccccc-chhhhhhhccCcccccc----------cHHHHhhhHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKR--N------AKN------MVYPS-NPAFFTTTVGGMQLSYV----------SALSALQNTNVYSVINR 55 (383) Q Consensus 1 Mg~~~~~~~~~~--~------~~~------~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~i~~ 55 (383) |+|||+....-. . .+. ....+ ...++... ......+ +.+-+..++.+..||+. T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~--~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~ 78 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQP--LGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDR 78 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCC--CChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 999998644211 0 000 00000 00111110 0000000 11223347888899987 Q ss_pred HHH-hhcc--ceeE--eec---chhh-----------hhhhCC--CccCCHHHHHHHHHHHHHhcCCceEEEEec----- Q lcl|Aclame:pro 56 IAS-DVSS--AHFK--TEN---TATL-----------NRLESP--SSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----- 109 (383) Q Consensus 56 ia~-~ia~--~~~~--v~~---~~~~-----------~l~~~P--N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----- 109 (383) +.+ .|++ +-+. ... .... ..-.++ .-.+|.+++...++..++..|++|+.+.+. T Consensus 79 ~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~ 158 (548) T protein:vir:95 79 LEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNY 158 (548) T ss_pred HHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccccc Confidence 744 4543 2111 110 0001 111122 335789999999999999999999987642 Q ss_pred --------cceEEeecCcceeee------------ecCCceEEEEEEec----------CceEEEEchhheEEecccCcc Q lcl|Aclame:pro 110 --------NLEHIPNSDVQINYL------------PGNMGIVYTVLESN----------DRPKMVLRQDQMLHFRLMPDP 159 (383) Q Consensus 110 --------~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~vih~r~~~~~ 159 (383) .++++.++....... ...+..+.|.+... ......+++++|+|+... . T Consensus 159 ~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~--~ 236 (548) T protein:vir:95 159 TFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYR--K 236 (548) T ss_pred cCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccc--c Confidence 123333332221111 11122222333221 122456999999999743 3 Q ss_pred ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCce-eccCC Q lcl|Aclame:pro 160 QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLM-VLPDG 238 (383) Q Consensus 160 ~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~-vl~~g 238 (383) .....+|+|.+..+...+.-............+=.+...++|+.+..... ..+.....-.. ...-..|.++ .|..| T Consensus 237 r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~--~~~~~~~~~~~-~~~~~pG~iv~~L~pG 313 (548) T protein:vir:95 237 RIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSY--TVEPGKDRKNR-TIPIAPGMVFDDLEPG 313 (548) T ss_pred CCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccc--cCCCCcccccc-cccccCCccccccCCC Confidence 34467899999988888876666666666666666666777776543211 11100000000 0011234433 58889 Q ss_pred ceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-----------HHHH-HHHHHHHH Q lcl|Aclame:pro 239 FDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-----------TYLA-NLNSYVNP 306 (383) Q Consensus 239 ~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-----------~~~~-tl~p~~~~ 306 (383) .+++.++.+.....+ .+..+...+.||+.+|||.+.|....+. +||..-+... .+.. .+.|+.+. T Consensus 314 e~i~~~~p~~p~~~~-~~f~~~~lr~IAaglGipYe~ltgD~s~--nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~ 390 (548) T protein:vir:95 314 EDVGMIESNRPNPFL-EGFRNGQLRMIGAGTRSTYSSVSRAYDG--TYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRS 390 (548) T ss_pred ceeeecCCCCCCCCH-HHHHHHHHHHHHhhcCCCHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999988866333344 5788889999999999999998765433 4544332221 1111 23333332 Q ss_pred H-HHHHHhhcC--Cc------eeeeec--hhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCC---------- Q lcl|Aclame:pro 307 I-VDELRLKMN--AP------DLELDI--KDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPD---------- 365 (383) Q Consensus 307 i-~~~l~~~l~--~~------~~~fd~--~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~---------- 365 (383) + ++++-.-.+ +. .+..++ -.....|+..-+++...++++|+.|.-|+=...|.++-.-- T Consensus 391 wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~ 470 (548) T protein:vir:95 391 WLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKAN 470 (548) T ss_pred HHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH Confidence 2 222221111 11 111121 22334599999999999999999999988888886652100 Q ss_pred ---cccc-ccCCCCCCCCC--------------------CCC Q lcl|Aclame:pro 366 ---NLPE-FKPLTNETKGG--------------------DDK 383 (383) Q Consensus 366 ---d~~~-~~~~~~~~~gG--------------------d~~ 383 (383) +++. ......+.++| ||. T Consensus 471 ~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (548) T protein:vir:95 471 RAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEA 512 (548) T ss_pred HHcCCCCCCcccccccccccCCCCchhhhccccccccccchh Confidence 0000 00001111111 211 No 129 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.34 E-value=1.4e-11 Score=80.09 Aligned_cols=379 Identities=7% Similarity=-0.035 Sum_probs=186.6 Q ss_pred Ccccchhccccc-cc----------cccccccchhhhhhhccCcc--------cccccHHHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGLLTPKNFSKR-NA----------KNMVYPSNPAFFTTTVGGMQ--------LSYVSALSALQNTNVYSVINRIASDVS 61 (383) Q Consensus 1 Mg~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~i~~ia~~ia 61 (383) |--+-......+ .. .+........|.....+... ...-+.+-+-.++.+.+||+.+.+.+= T Consensus 3 ~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvV 82 (533) T protein:vir:34 3 TPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDHIV 82 (533) T ss_pred CchhhhhhcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhh Confidence 111100000000 00 00000001111100000000 000011223357889999987766553 Q ss_pred cceeEeecch-----------h-----------hhhhhCCC------ccCCHHHHHHHHHHHHHhcCCceEEEEecc--- Q lcl|Aclame:pro 62 SAHFKTENTA-----------T-----------LNRLESPS------SLIGRFSFWQGALMQLCLSGNDYIPLVGQN--- 110 (383) Q Consensus 62 ~~~~~v~~~~-----------~-----------~~l~~~PN------~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--- 110 (383) .--+.+.-.+ . ....+.|+ -.++.+++...++..++..|++|+.+.+.. T Consensus 83 G~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~g 162 (533) T protein:vir:34 83 GSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTSSS 162 (533) T ss_pred CCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccCCC Confidence 3344433211 1 11122333 346889999999999999999999876421 Q ss_pred ------ceEEeecCcceeeee------------cC-CceEEEEEEec--Cc----------eEEEEchhheEEecccCcc Q lcl|Aclame:pro 111 ------LEHIPNSDVQINYLP------------GN-MGIVYTVLESN--DR----------PKMVLRQDQMLHFRLMPDP 159 (383) Q Consensus 111 ------~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~--~~----------~~~~~~~~~vih~r~~~~~ 159 (383) +.++.++........ +. +..+-|.+... ++ ....++.++|+|+... . T Consensus 163 ~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~--~ 240 (533) T protein:vir:34 163 RLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEP--V 240 (533) T ss_pred CccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeeccc--c Confidence 233333322211111 11 12222333211 11 1224678899999753 3 Q ss_pred ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC----------CHHHHHHHHH---HHHHHhcC Q lcl|Aclame:pro 160 QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS----------DGKDLESARE---EFEKANTG 226 (383) Q Consensus 160 ~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~----------~~~~~~~~~~---~~~~~~~g 226 (383) .....+|+|.+..+...+.-............+-.+...++|+.+.... ..+..+.+.. .......+ T Consensus 241 r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (533) T protein:vir:34 241 EDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAA 320 (533) T ss_pred CCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCc Confidence 3446789999998888887666666666666666666677776553211 0111111111 11111111 Q ss_pred ----cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH----------- Q lcl|Aclame:pro 227 ----DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ----------- 291 (383) Q Consensus 227 ----~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~----------- 291 (383) -+.|.+..|..|.+++.++.+-....+ .+..+...+.||+.+|||.+.|.... ++.+||...+ T Consensus 321 ~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~-~~f~~~~lr~iAaglGi~ye~lt~D~-s~~nYSS~R~~~~e~~r~~~~ 398 (533) T protein:vir:34 321 APVRLGGAKVPHLMPGDSLNLQTAQDTDNGY-SVFEQSLLRYIAAGLGVSYEQLSRNY-AQMSYSTARASANESWAYFMG 398 (533) T ss_pred ceeeccCceeeecCCCCeeeecCCCCCCCCH-HHHHHHHHHHHHhhcCCCHHHHhhhc-ccccHHHHHHHHHHHHHHHHH Confidence 123567788999999988876444454 57888889999999999999886543 2234433322 Q ss_pred HHHHHHH-HHHHHHHHH-HHHHHhhcCC-c---------------eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 292 IKATYLA-NLNSYVNPI-VDELRLKMNA-P---------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQA 353 (383) Q Consensus 292 ~~~~~~~-tl~p~~~~i-~~~l~~~l~~-~---------------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~ 353 (383) ...++.. .+.|+.+.+ ++++-...+. + ..++-.-.....|+...+++...++++|+.|.-|+ T Consensus 399 ~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~ 478 (533) T protein:vir:34 399 RRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKE 478 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHH Confidence 1112222 234444332 2222221111 1 01222222334599999999999999999999998 Q ss_pred HHHhCCCCc------------------cCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 354 QFILTRSGF------------------LPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 354 R~~~g~~p~------------------~~~d~~~~~~~~~~~~gGd~~ 383 (383) -...|.++- +....+.........+..+++ T Consensus 479 ~a~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~ 526 (533) T protein:vir:34 479 CAKRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEE 526 (533) T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCC Confidence 888887652 211111111110101111111 No 130 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.32 E-value=1.9e-11 Score=79.39 Aligned_cols=379 Identities=7% Similarity=-0.032 Sum_probs=187.1 Q ss_pred Ccccchhcccccccc----------ccccccchhhhhhhccCcc--------cccccHHHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK----------NMVYPSNPAFFTTTVGGMQ--------LSYVSALSALQNTNVYSVINRIASDVSS 62 (383) Q Consensus 1 Mg~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~i~~ia~~ia~ 62 (383) |..=.-+.=..+... +........|.....+... ...-+.+-+..++.+.+||+.+.+.+=. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG 80 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIVG 80 (530) T ss_pred CccceeecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhC Confidence 322221100000000 0000111111000000000 0001122233578889999887665533 Q ss_pred ceeEeecch-----------h-----------hhhhhCCC------ccCCHHHHHHHHHHHHHhcCCceEEEEecc---- Q lcl|Aclame:pro 63 AHFKTENTA-----------T-----------LNRLESPS------SLIGRFSFWQGALMQLCLSGNDYIPLVGQN---- 110 (383) Q Consensus 63 ~~~~v~~~~-----------~-----------~~l~~~PN------~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---- 110 (383) --+.+.-.+ + ...-..|+ -.+|..++...++..++..|++|+.+.+.. T Consensus 81 ~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g~ 160 (530) T protein:vir:38 81 SFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDSTR 160 (530) T ss_pred CCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCCC Confidence 344433211 1 11122343 357899999999999999999999876532 Q ss_pred -----ceEEeecCcceeee-------------ecCCceEEEEEEec---Cc---------eEEEEchhheEEecccCccc Q lcl|Aclame:pro 111 -----LEHIPNSDVQINYL-------------PGNMGIVYTVLESN---DR---------PKMVLRQDQMLHFRLMPDPQ 160 (383) Q Consensus 111 -----~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~---~~---------~~~~~~~~~vih~r~~~~~~ 160 (383) ++++.++....... ...+..+.|++... +. ....++.++|+|+... .. T Consensus 161 ~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~--~r 238 (530) T protein:vir:38 161 LFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEP--ME 238 (530) T ss_pred ccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccc--cC Confidence 23333332221111 11122233333221 10 1234667799999753 33 Q ss_pred cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCC----------HHHHHHHHHHHHH---HhcC- Q lcl|Aclame:pro 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSD----------GKDLESAREEFEK---ANTG- 226 (383) Q Consensus 161 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~g- 226 (383) ....+|+|.+..+...+.-............+-.+...++|+.+..... .++...+...... .... T Consensus 239 ~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (530) T protein:vir:38 239 DGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAA 318 (530) T ss_pred CCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhccccc Confidence 3467999999988888876666666666556666666677765432110 0111111111111 1110 Q ss_pred ---cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHH---------- Q lcl|Aclame:pro 227 ---DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIK---------- 293 (383) Q Consensus 227 ---~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~---------- 293 (383) -..|.+..|..|.+++..+.+-....+ .+..+...+.||+.+|||.+.|.... +..+||...+.. T Consensus 319 ~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~-~~f~~~~lr~iaaglGi~ye~lt~D~-s~~nYSS~R~~~~e~~r~~~~~ 396 (530) T protein:vir:38 319 PVRLGGARVPHLLPGDSLNLQSAQDTDNGY-STFEQSLLRYIAAGLGVSYEQLSRNY-SQMSYSTARASANESWAYFMGR 396 (530) T ss_pred ceeccCceeeecCCCCeeeeeCCCCCCCCH-HHHHHHHHHHHHhhcCCCHHHHhccc-ccccHHHHHHHHHHHHHHHHHH Confidence 134567788999999988876433354 57889999999999999999886533 223343322211 Q ss_pred -HHHHH-HHHHHHHH-HHHHHHhhcCC-c---ee------------eeechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Q lcl|Aclame:pro 294 -ATYLA-NLNSYVNP-IVDELRLKMNA-P---DL------------ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQ 354 (383) Q Consensus 294 -~~~~~-tl~p~~~~-i~~~l~~~l~~-~---~~------------~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R 354 (383) .++.. .+.|+... +++++..-.+. + .+ ++-.-.....|+...+++...++++|+.|.-|+- T Consensus 397 q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~ 476 (530) T protein:vir:38 397 RKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKEC 476 (530) T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHH Confidence 11211 23343333 22222221111 1 11 1211222334999999999999999999999988 Q ss_pred HHhCCCC------------------ccCCccccccC-CCCCCCCCCCC Q lcl|Aclame:pro 355 FILTRSG------------------FLPDNLPEFKP-LTNETKGGDDK 383 (383) Q Consensus 355 ~~~g~~p------------------~~~~d~~~~~~-~~~~~~gGd~~ 383 (383) ...|.++ ++....+.... ........|++ T Consensus 477 a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 524 (530) T protein:vir:38 477 AKRGDDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEAGVKKSNEEEQ 524 (530) T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCCC Confidence 8888665 11111111111 11111111222 No 131 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.31 E-value=3.2e-12 Score=83.62 Aligned_cols=354 Identities=12% Similarity=0.055 Sum_probs=168.5 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHh-hhHHHHHHHHHHHHhhc-cceeEeecchh------ Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSAL-QNTNVYSVINRIASDVS-SAHFKTENTAT------ 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~i~~ia~~ia-~~~~~v~~~~~------ 72 (383) |||.+-....- ..+ + ..+..++-......--...++ .++.++.+|+.+++.+- +.|..+..... T Consensus 23 d~l~~~~~glg-~~r------~-~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~d~~~~~~~~i~~g~~~~~~~~~ 94 (449) T protein:vir:10 23 MGLMVPTMGLD-NKR------H-SAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADDSEDE 94 (449) T ss_pred HHHHHHHhcCC-ccc------c-hhhhhcCCcccCCHHHHHHHHhcCchhHHHHHhhhhhhhhcCcccccCccccchhhh Confidence 44444321110 000 0 011111111111111112233 46778999999998762 11221111100 Q ss_pred ---hhhhhCCCccCCHHHHHHHH---HHHHHhcCCceEEEE-ecc--c-----------eEEeecCcceee---ee---- Q lcl|Aclame:pro 73 ---LNRLESPSSLIGRFSFWQGA---LMQLCLSGNDYIPLV-GQN--L-----------EHIPNSDVQINY---LP---- 125 (383) Q Consensus 73 ---~~l~~~PN~~~s~~~f~~~~---~~~l~l~G~a~~~~~-~~~--~-----------~~~~~~~~~~~~---~~---- 125 (383) ...+.+-+ ...+|..+ ...-.++|-|.+++. .+. + .+.|.+...+.+ .. T Consensus 95 ~~~e~~~~~l~----~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~~i~~~~~~~dp~s 170 (449) T protein:vir:10 95 TSWEKKSKQVF----TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINS 170 (449) T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCCcccccCcceeeEEeeccccCChhhhhcCCCC Confidence 01111000 01233332 222346787777653 221 0 122222111110 11 Q ss_pred -cCCceEEEEEEec----CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHH-HHHHHHHHhccCCc-- Q lcl|Aclame:pro 126 -GNMGIVYTVLESN----DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKA-SKSNMSAMENQINP-- 197 (383) Q Consensus 126 -~~~~~~~~~~~~~----~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~-~~~~~~~~~ng~~p-- 197 (383) +-+...+|.+... ....+.+.++.|+||-.. +.-|.|.++.+...+.....+ .-+...+++|..+- T Consensus 171 p~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~------~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~ 244 (449) T protein:vir:10 171 KTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY------SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLN 244 (449) T ss_pred CCCCCceEEEEeeeccCCCccceeeccceeEeecCC------CCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHh Confidence 1122333333211 223456888888887422 123777888777655322222 22222233322111 Q ss_pred ---------ceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 ---------AGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKA 268 (383) Q Consensus 198 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~ 268 (383) ..+....+. ..++..+++....+....+.+ .++++.+-+++.++.++.+.. +........||.+ T Consensus 245 ~~~~~~~~~~~l~~~~~~-~~e~~~~~~~~~~~~~~~~~~---~~~i~~~~d~~~~~~~~sgl~---d~l~~~~q~iaaa 317 (449) T protein:vir:10 245 VNFEKEIDFTNLASLYGV-SIDELQDKFNEVAGEINRGND---VLMTTQGATVTPLVTSVADPT---ATYNVNLQTAAAG 317 (449) T ss_pred hhhhhhhhhhhhhHHhhC-CchHHHHHHHHHHHHHhccch---heeecCCcceEEEecccCChh---HHHHHHHHHHHHH Confidence 111111111 122334455555555544432 455677778998888877654 4455566789999 Q ss_pred hcCCHHHh-ccccccccchhHHHHHHHHHH------HHHHHHHHHHHHHHHhhcCC---ceeeeechhhhccCHHHHHH- Q lcl|Aclame:pro 269 FGVPSDIL-GGGTSTESQHSNIDQIKATYL------ANLNSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSILIN- 337 (383) Q Consensus 269 fgVp~~~l-g~~~~~~~~~~~~e~~~~~~~------~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~~~- 337 (383) -|||...| |...++ .+. . +..+.+|. .-|.|.++.+.+.|-+.-++ .++.|.+++|...+.+++++ T Consensus 318 ~~IP~t~L~Gqsp~g-lns-t-~D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~~~d~~i~f~pL~~~t~kEkAei 394 (449) T protein:vir:10 318 VDIPTRILIGNQQAE-RSS-T-EDQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTN 394 (449) T ss_pred hCCCeeeeeccCccc-ccc-c-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCCCceeEEeCCCCCCCHHHHHHH Confidence 99998765 544333 322 2 22333332 23677777777766554432 47899999999998888855 Q ss_pred ------HHHHHHhCC---CcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 338 ------QVSNLAKSG---VLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 338 ------~~~~~~~~G---~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) ++++++++| +++++|+|+.+|++|..+.+.+....+ +..++.|-. T Consensus 395 ~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~~~~e~~d-e~~~~~d~~ 448 (449) T protein:vir:10 395 AKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEEDGD-EEDKATDSA 448 (449) T ss_pred HHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCCCCCCCCc-cccccCCcC Confidence 455677677 999999999999998554433221111 111111222 No 132 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.28 E-value=1.7e-10 Score=74.13 Aligned_cols=367 Identities=13% Similarity=0.059 Sum_probs=183.2 Q ss_pred Ccccchhccccccccccccccchhhhh-hhccCc--------------ccccccHHHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFT-TTVGGM--------------QLSYVSALSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) |.= ..+..+...|.-.+-.. ....+. +...-..+..++.+.|.+|++.+...|.+++| T Consensus 1 ~~~-------~~~~~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~D~hi~s~l~~Rk~av~~~~w 73 (488) T protein:vir:95 1 MAD-------ITETQESLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLMMRDPAVAASVNIIKMFVRKVNW 73 (488) T ss_pred CCC-------ccccCCCCCHHHHHHHHHHhhccccchhhccchhhhcccchHHHHHHHhhChHHHHHHHHHHHHHhcCCc Confidence 211 11111111111000000 000000 00111234556789999999999999999999 Q ss_pred Eeecchh---h-------hhhhC--CCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------------eEEee---- Q lcl|Aclame:pro 66 KTENTAT---L-------NRLES--PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------------EHIPN---- 116 (383) Q Consensus 66 ~v~~~~~---~-------~l~~~--PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------------~~~~~---- 116 (383) .|..... + .++.. -|-..++.+++..+. +.+.+|-+.+++++... ..+.+ T Consensus 74 ~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i~ 152 (488) T protein:vir:95 74 RFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWAKLP 152 (488) T ss_pred eEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeeeeee Confidence 9973211 0 11111 122235666777665 45788999988877421 11111 Q ss_pred -cCc---ceeeeecCCceEEEEEEe--------------cCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHH Q lcl|Aclame:pro 117 -SDV---QINYLPGNMGIVYTVLES--------------NDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALN 178 (383) Q Consensus 117 -~~~---~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~ 178 (383) .|. +......+++........ .......+++...+++++-...+ ..+|.+.+..+.-... T Consensus 153 ~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g--~p~g~gLlr~~~w~~~ 230 (488) T protein:vir:95 153 IRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYG--NPEGRSPLLNAYVPWK 230 (488) T ss_pred ecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCC--ccchhhHHHHHHHHHH Confidence 111 112222222222111100 01122456666655555433322 3579999999999888 Q ss_pred HHHHHHHHHHHHHhccCCcceEEEEcCcC---CCHHHHHHHHHHHHHHh----cCcccCCceeccCCceeE--------- Q lcl|Aclame:pro 179 LDDKASKSNMSAMENQINPAGKLTISNYL---SDGKDLESAREEFEKAN----TGDNSGRLMVLPDGFDYT--------- 242 (383) Q Consensus 179 ~~~~~~~~~~~~~~ng~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~g~n~g~~~vl~~g~~~~--------- 242 (383) ......++...+.+..+.|--+...+... .++++.+.+.+...+.. .+..+ .++++.|+++. T Consensus 231 fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~a--g~iiP~g~~~~~k~~~~e~~ 308 (488) T protein:vir:95 231 YKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRA--GLIWPRYIDPDTKEDIFEFS 308 (488) T ss_pred HHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchh--heeeccccccccchhhhhhh Confidence 88888899898988755454444443211 12223333333333322 22222 34555554422 Q ss_pred ecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----- Q lcl|Aclame:pro 243 QLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA----- 317 (383) Q Consensus 243 ~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~----- 317 (383) .++..........+..++.-++|+.+.-=.. |....+...+++..+-....+..-+.-.++.+++.+|+.|+. T Consensus 309 l~~~~~~~~~~~~~li~~~d~~Isk~iLGqt--LT~~~~~~Gs~Al~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~ 386 (488) T protein:vir:95 309 LVSRQGAKAYDTGSIIDRYSKQIMMAFMSDV--LAMGQSKYGSFSLADSKTSLLAMSVDILLKQIKNVINRDLVAQTYAL 386 (488) T ss_pred ccccccCCchhHHHHHHHHHHHHHHHHhccc--cccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 2232221111123556666677877652211 111122223444444455555566778888999999986632 Q ss_pred --------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCccCCccccccC-CCCCCCCCCCC Q lcl|Aclame:pro 318 --------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGA-----EQAQFILTRSGFLPDNLPEFKP-LTNETKGGDDK 383 (383) Q Consensus 318 --------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~-----nE~R~~~g~~p~~~~d~~~~~~-~~~~~~gGd~~ 383 (383) +.++|+ .....|++++++++.++++.|+.-+ +.+|+.+|.++-..+....... +.+..+.|+.. T Consensus 387 Nfg~~~~~P~~~~~--~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~~~~~~~~~~ 464 (488) T protein:vir:95 387 NMWDDEEHVQITYD--DIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPNSQSRSGDGY 464 (488) T ss_pred cCCCCCCccEEEec--CcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCCCCCCCCccc Confidence 234454 3345788999999999999998765 5799999987543222111111 11111112111 No 133 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.28 E-value=1e-11 Score=80.89 Aligned_cols=367 Identities=12% Similarity=0.069 Sum_probs=181.8 Q ss_pred Ccccchhccc------cccccccccccc----hhhhhhhccCccc-ccccHHHHhhhHHHHHHHHHHHHhhccceeEe-e Q lcl|Aclame:pro 1 MGLLTPKNFS------KRNAKNMVYPSN----PAFFTTTVGGMQL-SYVSALSALQNTNVYSVINRIASDVSSAHFKT-E 68 (383) Q Consensus 1 Mg~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v-~ 68 (383) -++-. .|.- +.+..+.++.-+ ...-..|..+... .+-......+.|.+++|+..|++.+..- |.- . T Consensus 67 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~ 144 (695) T protein:vir:78 67 LRLAR-QFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAI 144 (695) T ss_pred cccce-eceeccccCCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceec Confidence 22211 1110 111111111000 0000011111110 1122355668899999999999987443 421 1 Q ss_pred cc-----------------------hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEE--ecc------c------ Q lcl|Aclame:pro 69 NT-----------------------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV--GQN------L------ 111 (383) Q Consensus 69 ~~-----------------------~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~--~~~------~------ 111 (383) .. ...+|...-....-+..|.+.+. +--++|-+.+++. .+. + T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik-~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~ 223 (695) T protein:vir:78 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT 223 (695) T ss_pred cccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccceEEEEEeccCcccccccccccccc Confidence 00 00112222222333333444444 4457887765542 211 1 Q ss_pred -------eEEeecCcceeeee---------cCCceEEEEEEecCceEEEEchhheEEecccCcc-----ccCccccCcHH Q lcl|Aclame:pro 112 -------EHIPNSDVQINYLP---------GNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDP-----QYRYLIGRSPL 170 (383) Q Consensus 112 -------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~-----~~~~~~G~spi 170 (383) ++..++|..+.... +-....||+.. + ..+..+.++.|...+.+ .+. ..|.|.. T Consensus 224 I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G---~kIH~SRL~~f~g~plPd~LKp~y~-~~GiSv~ 297 (695) T protein:vir:78 224 VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G---TEVHATRLHTIVSRPVGDMLKPTYS-FAGISMT 297 (695) T ss_pred ccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--c---eEEeeeeEEEecCCCchhhhhcccc-cCcccHH Confidence 23444444433321 11122233322 1 23555555444432211 222 3599999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceEEE-EcCcCCCHHHHHHHHHHHH--HHhcCcccCCceecc-CCceeEeccc Q lcl|Aclame:pro 171 ESLQNALNLDDKASKSNMSAMENQINPAGKLT-ISNYLSDGKDLESAREEFE--KANTGDNSGRLMVLP-DGFDYTQLEM 246 (383) Q Consensus 171 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~g~n~g~~~vl~-~g~~~~~l~~ 246 (383) +.+...+............+...-.. .++.+ ....+.+....+ +..+++ +.++ +| .++.+++ ..-+|...+. T Consensus 298 q~~~e~V~~~~rT~~~v~~Li~~~~v-~~lk~dla~~L~~g~~~~-l~~R~eli~~~R-sn-~G~~llDk~~Eefeq~st 373 (695) T protein:vir:78 298 QLAMPYIDNWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVD-LSMRAELINRYR-DN-RNILFLDKATEEFFQFNT 373 (695) T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhh-HHHHHHHHHhhcChhHHH-HHHHHHHHHHhc-Cc-cceEEEecCCcceEEEec Confidence 99999988877777777777654332 22211 112233333322 222222 3333 23 3577888 4788888887 Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHH------HHHHHHHHHHHHHHHHHHHHHhhcCC-- Q lcl|Aclame:pro 247 KTDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQ------IKATYLANLNSYVNPIVDELRLKMNA-- 317 (383) Q Consensus 247 ~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~------~~~~~~~tl~p~~~~i~~~l~~~l~~-- 317 (383) +...++ +........||.+-|||... +|....+-.+++..+. ....-..-|.|.++.+-+.+-+-.++ T Consensus 374 slSGLd---dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i 450 (695) T protein:vir:78 374 PLSGLD---ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV 450 (695) T ss_pred ccCCHH---HHHHHHHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 666554 34445568899999999875 5654444323322222 11111235788888888887777665 Q ss_pred -ceeeeechhhhccCHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCcc-------CCccccccCCC-------- Q lcl|Aclame:pro 318 -PDLELDIKDMLDVDDSILINQ-------VSNLAKSGVLGAEQAQFILTRSGFL-------PDNLPEFKPLT-------- 374 (383) Q Consensus 318 -~~~~fd~~~ll~~d~~~~~~~-------~~~~~~~G~~t~nE~R~~~g~~p~~-------~~d~~~~~~~~-------- 374 (383) +++.|.+++|.+.|.++++++ ...++..|+++++|+|..+.-+|-. -.|.|...... T Consensus 451 dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~ 530 (695) T protein:vir:78 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY 530 (695) T ss_pred CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhh Confidence 478889999988888777655 5668899999999999998765421 12222221111 Q ss_pred -CCCCCCCCC Q lcl|Aclame:pro 375 -NETKGGDDK 383 (383) Q Consensus 375 -~~~~gGd~~ 383 (383) .....|+|. T Consensus 531 ~~~~~~~~~~ 540 (695) T protein:vir:78 531 VQRLAEGGDT 540 (695) T ss_pred hcCccccccc Confidence 111122222 No 134 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.27 E-value=1.1e-11 Score=80.62 Aligned_cols=368 Identities=12% Similarity=0.061 Sum_probs=181.8 Q ss_pred Ccccchhccc------cccccccccccc----hhhhhhhccCccc-ccccHHHHhhhHHHHHHHHHHHHhhccceeEe-e Q lcl|Aclame:pro 1 MGLLTPKNFS------KRNAKNMVYPSN----PAFFTTTVGGMQL-SYVSALSALQNTNVYSVINRIASDVSSAHFKT-E 68 (383) Q Consensus 1 Mg~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v-~ 68 (383) -+=|.+.|.- +.+..+.++.-+ ...-..|..+... .+-......+.|.+++|+..|++.+..- |.- . T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~ 143 (694) T protein:vir:10 65 SLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAI 143 (694) T ss_pred chhhhhhccccccCCCccccchhhhhhccCcccccchhhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceec Confidence 1111111111 111111111100 0000011111110 1122455668899999999999987443 421 1 Q ss_pred cc-----------------------hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEE--ecc------c------ Q lcl|Aclame:pro 69 NT-----------------------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV--GQN------L------ 111 (383) Q Consensus 69 ~~-----------------------~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~--~~~------~------ 111 (383) .. ...+|...-....-+..|.+.+. +--++|-+.+++. .+. + T Consensus 144 ~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik-~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~ 222 (694) T protein:vir:10 144 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT 222 (694) T ss_pred cccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccceEEEEEeecCcccccccccccccc Confidence 00 00112222222333333444444 4457887765543 211 1 Q ss_pred -------eEEeecCcceeeee---------cCCceEEEEEEecCceEEEEchhheEEecccCcc-----ccCccccCcHH Q lcl|Aclame:pro 112 -------EHIPNSDVQINYLP---------GNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDP-----QYRYLIGRSPL 170 (383) Q Consensus 112 -------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~-----~~~~~~G~spi 170 (383) ++..++|..+.... +-....||+.. + ..+..+.++.|...+.+ .+. ..|.|.. T Consensus 223 I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G---~~IH~SRL~~f~g~plPd~LKp~y~-~~G~Sv~ 296 (694) T protein:vir:10 223 VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G---TEVHATRLHTIVSRPVGDMLKPTYS-FAGISMT 296 (694) T ss_pred ccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--c---eEEeeeeEEEecCCCchhhhhcccc-cCcccHH Confidence 23444444333321 11122233322 1 23555555444432211 222 3599999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceEEE-EcCcCCCHHHHHHHHHHHH--HHhcCcccCCceecc-CCceeEeccc Q lcl|Aclame:pro 171 ESLQNALNLDDKASKSNMSAMENQINPAGKLT-ISNYLSDGKDLESAREEFE--KANTGDNSGRLMVLP-DGFDYTQLEM 246 (383) Q Consensus 171 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~g~n~g~~~vl~-~g~~~~~l~~ 246 (383) +.+...+............+...-.. .++.+ ....+.+....+ +..+++ +.++ +| .++.+++ ..-+|...+. T Consensus 297 q~~~e~V~~~~rT~~~v~~Li~~~~v-~~lk~dla~~L~~g~~~~-l~~R~eli~~~R-sn-~G~~llDk~~Eefeq~st 372 (694) T protein:vir:10 297 QLAMPYIDNWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVD-LSMRAELINRYR-DN-RNILFLDKATEEFFQFNT 372 (694) T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhh-HHHHHHHHHhhcChhHHH-HHHHHHHHHHhc-Cc-cceEEEecCCcceEEEec Confidence 99999888877777777777654332 22111 112233333322 222222 3333 23 3577888 4788888887 Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHH------HHHHHHHHHHHHHHHHHHHHHhhcCC-- Q lcl|Aclame:pro 247 KTDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQ------IKATYLANLNSYVNPIVDELRLKMNA-- 317 (383) Q Consensus 247 ~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~------~~~~~~~tl~p~~~~i~~~l~~~l~~-- 317 (383) +...++ +........||.+-|||... +|....+-.+++..+. ....-..-|.|.++.+-+.+-+-.++ T Consensus 373 slSGLd---dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i 449 (694) T protein:vir:10 373 PLSGLD---ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV 449 (694) T ss_pred ccCCHH---HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 666554 34445568899999999875 5654444323322222 11111235788888888887777665 Q ss_pred -ceeeeechhhhccCHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCcc-------CCccccccCCC-------- Q lcl|Aclame:pro 318 -PDLELDIKDMLDVDDSILINQ-------VSNLAKSGVLGAEQAQFILTRSGFL-------PDNLPEFKPLT-------- 374 (383) Q Consensus 318 -~~~~fd~~~ll~~d~~~~~~~-------~~~~~~~G~~t~nE~R~~~g~~p~~-------~~d~~~~~~~~-------- 374 (383) +++.|.+++|.+.|.++++++ ...++..|+++++|+|..+.-+|-. -.|.|...... T Consensus 450 dp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~ 529 (694) T protein:vir:10 450 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY 529 (694) T ss_pred CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhh Confidence 478889999988888777655 5668899999999999998765421 12222221111 Q ss_pred -CCCCCCCCC Q lcl|Aclame:pro 375 -NETKGGDDK 383 (383) Q Consensus 375 -~~~~gGd~~ 383 (383) .....|+|. T Consensus 530 ~~~~~~~~~~ 539 (694) T protein:vir:10 530 VQRLAEGGDT 539 (694) T ss_pred hcCccccccc Confidence 011122222 No 135 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.27 E-value=1e-11 Score=80.81 Aligned_cols=367 Identities=13% Similarity=0.074 Sum_probs=180.2 Q ss_pred Ccccchhccc------cccccccccccc----hhhhhhhccCccc-ccccHHHHhhhHHHHHHHHHHHHhhccceeEe-e Q lcl|Aclame:pro 1 MGLLTPKNFS------KRNAKNMVYPSN----PAFFTTTVGGMQL-SYVSALSALQNTNVYSVINRIASDVSSAHFKT-E 68 (383) Q Consensus 1 Mg~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v-~ 68 (383) -++-. .|.- +.+....++.-+ ...-..|..+... .+-......+.|.+++|+..|++.+..- |.- . T Consensus 67 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~ 144 (695) T protein:vir:36 67 LRLAR-QFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAI 144 (695) T ss_pred cccce-eceecccccCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceec Confidence 22211 1110 011111111000 0000011111110 1122355668899999999999987443 421 1 Q ss_pred cc----h-------------------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEE--ecc------c------ Q lcl|Aclame:pro 69 NT----A-------------------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV--GQN------L------ 111 (383) Q Consensus 69 ~~----~-------------------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~--~~~------~------ 111 (383) .. . ...|...-....-+..|.+ .+.+--++|-+.+++. .+. + T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~e-aik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~ 223 (695) T protein:vir:36 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT-TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT 223 (695) T ss_pred ccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHH-HHHhhccccceEEEEEeccCcccccccccccccc Confidence 00 0 0112211122222233333 3444457887765542 211 1 Q ss_pred -------eEEeecCcceeeee---------cCCceEEEEEEecCceEEEEchhheEEecccCcc-----ccCccccCcHH Q lcl|Aclame:pro 112 -------EHIPNSDVQINYLP---------GNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDP-----QYRYLIGRSPL 170 (383) Q Consensus 112 -------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~-----~~~~~~G~spi 170 (383) ++..++|..+.... +-....||+.. + ..+..+.++.|...+.+ .+. ..|.|.. T Consensus 224 I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G---~kIH~SRL~~f~g~plPd~LKp~y~-~~GiSv~ 297 (695) T protein:vir:36 224 VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G---TEVHATRLHTIVSRPVGDMLKPTYS-FAGISMT 297 (695) T ss_pred ccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe--c---eEEeeeeEEEecCCCchhhhhcccc-cCcccHH Confidence 23444444433321 11122233322 1 23555555444432211 222 3599999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceEEE-EcCcCCCHHHHHHHHHHHH--HHhcCcccCCceecc-CCceeEeccc Q lcl|Aclame:pro 171 ESLQNALNLDDKASKSNMSAMENQINPAGKLT-ISNYLSDGKDLESAREEFE--KANTGDNSGRLMVLP-DGFDYTQLEM 246 (383) Q Consensus 171 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~g~n~g~~~vl~-~g~~~~~l~~ 246 (383) +.+...+............+.+.-.. .++.+ ....+.+....+ +..+++ +.++ +| .++.+++ ..-+|...+. T Consensus 298 q~~~e~V~~~~rT~~~v~~Li~~~~v-~~lk~dla~aL~~g~~~~-l~~R~eli~~~R-sn-~G~~llDk~~Eefeq~st 373 (695) T protein:vir:36 298 QLAMPYIDNWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVD-LSMRAELINRYR-DN-RNILFLDKATEEFFQFNT 373 (695) T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhH-HHHHHHHHHhhcChhHHH-HHHHHHHHHHhc-Cc-cceEEEecCCcceEEEec Confidence 99998888877777777777654322 21111 112222322222 222222 3333 23 3577888 4788888887 Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHH------HHHHHHHHHHHHHHHHHHHHHhhcCC-- Q lcl|Aclame:pro 247 KTDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQ------IKATYLANLNSYVNPIVDELRLKMNA-- 317 (383) Q Consensus 247 ~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~------~~~~~~~tl~p~~~~i~~~l~~~l~~-- 317 (383) +...++ +........||.+-|||... +|....+-.+++..+. ....-..-|.|.++.+-+.+-+-.++ T Consensus 374 slSGLd---dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i 450 (695) T protein:vir:36 374 PLSGLD---ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV 450 (695) T ss_pred ccCCHH---HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 666554 34445568899999999875 5654444323322222 11111235788888888887777665 Q ss_pred -ceeeeechhhhccCHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCcc-------CCccccccCCC-------- Q lcl|Aclame:pro 318 -PDLELDIKDMLDVDDSILINQ-------VSNLAKSGVLGAEQAQFILTRSGFL-------PDNLPEFKPLT-------- 374 (383) Q Consensus 318 -~~~~fd~~~ll~~d~~~~~~~-------~~~~~~~G~~t~nE~R~~~g~~p~~-------~~d~~~~~~~~-------- 374 (383) +++.|.+++|.+.|.++++++ ...+++.|+++++|+|..+.-+|-. -.|.|...... T Consensus 451 dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~ 530 (695) T protein:vir:36 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY 530 (695) T ss_pred CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhh Confidence 478889999988888777655 5668899999999999998765421 12222221111 Q ss_pred -CCCCCCCCC Q lcl|Aclame:pro 375 -NETKGGDDK 383 (383) Q Consensus 375 -~~~~gGd~~ 383 (383) .....|+|. T Consensus 531 ~~~~~~~~~~ 540 (695) T protein:vir:36 531 VQRLAEGGDT 540 (695) T ss_pred hcCccccccc Confidence 111122222 No 136 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.25 E-value=1.2e-11 Score=80.50 Aligned_cols=368 Identities=12% Similarity=0.056 Sum_probs=181.1 Q ss_pred Ccccchhccc------cccccccccccc----hhhhhhhccCccc-ccccHHHHhhhHHHHHHHHHHHHhhccceeEe-e Q lcl|Aclame:pro 1 MGLLTPKNFS------KRNAKNMVYPSN----PAFFTTTVGGMQL-SYVSALSALQNTNVYSVINRIASDVSSAHFKT-E 68 (383) Q Consensus 1 Mg~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v-~ 68 (383) -++- +.|.- +.+....++.-+ ...-..|..+... .+-......+.|.+++|+..|++.+..- |.- . T Consensus 67 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~ 144 (698) T protein:vir:10 67 LRLA-RQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAI 144 (698) T ss_pred cccc-ccceeccccCCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceec Confidence 2221 11110 011111111000 0000011111110 1122355668899999999999987443 421 1 Q ss_pred cc-----------------------hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEE--ecc------------- Q lcl|Aclame:pro 69 NT-----------------------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV--GQN------------- 110 (383) Q Consensus 69 ~~-----------------------~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~--~~~------------- 110 (383) .. ...+|...-....-+..+.+.+.. --++|-+.+++. .+. T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~-aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~ 223 (698) T protein:vir:10 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPRPYT 223 (698) T ss_pred cccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccceEEEEEeecCcccccccccccccc Confidence 00 001122222223333334444444 457787765542 211 Q ss_pred ------ceEEeecCcceeeee---------cCCceEEEEEEecCceEEEEchhheEEecccCcc-----ccCccccCcHH Q lcl|Aclame:pro 111 ------LEHIPNSDVQINYLP---------GNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDP-----QYRYLIGRSPL 170 (383) Q Consensus 111 ------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~-----~~~~~~G~spi 170 (383) .++..++|..+.... +-+...||++. +. .+..+.++.|...+.+ .+ ...|.|.. T Consensus 224 I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~---~IH~SRL~~~vg~pvpd~LKp~y-~f~G~Sv~ 297 (698) T protein:vir:10 224 VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GS---EVHATRLHTIVSRPVGDMLKPTY-SFAGISMT 297 (698) T ss_pred ccCccceeeeeecccccccchhhhccchhhccCCCceEEEe--cc---eecceeEEEecCCCchhhhcchh-ccCCccHH Confidence 123444444333211 11122223222 11 3555555444432211 11 13599999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHH--HHhcCcccCCceecc-CCceeEecccC Q lcl|Aclame:pro 171 ESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFE--KANTGDNSGRLMVLP-DGFDYTQLEMK 247 (383) Q Consensus 171 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~n~g~~~vl~-~g~~~~~l~~~ 247 (383) +.+...+............+...-............+.+... ..+..+++ +.++ +| .++.+++ .+-+|...+.+ T Consensus 298 q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~dla~aL~~g~~-~~l~~R~eli~~~R-sn-~G~~llDk~~Eefeq~st~ 374 (698) T protein:vir:10 298 QLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALTPGAN-VDLSMRAELINRYR-DN-RNILFLDKATEEFFQFNTP 374 (698) T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCChhh-HHHHHHHHHHHHhc-Cc-cceEEEecCCcceEEEecC Confidence 999999888777777777666543222111111112222222 22333222 3333 23 3577788 47888888876 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHH------HHHHHHHHHHHHHHHHHHHHHhhcCC--- Q lcl|Aclame:pro 248 TDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQ------IKATYLANLNSYVNPIVDELRLKMNA--- 317 (383) Q Consensus 248 ~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~------~~~~~~~tl~p~~~~i~~~l~~~l~~--- 317 (383) ...++ +........||.+-+||... +|....+-.+++..+. ....-..-|.|.++.+-+.+-+-.++ T Consensus 375 lSGLd---dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~id 451 (698) T protein:vir:10 375 LSGLD---ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD 451 (698) T ss_pred cCCHH---HHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC Confidence 66554 44455568899999999875 5554444323322222 11111235888888888888777665 Q ss_pred ceeeeechhhhccCHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCccC-------CccccccCCC--------- Q lcl|Aclame:pro 318 PDLELDIKDMLDVDDSILINQ-------VSNLAKSGVLGAEQAQFILTRSGFLP-------DNLPEFKPLT--------- 374 (383) Q Consensus 318 ~~~~fd~~~ll~~d~~~~~~~-------~~~~~~~G~~t~nE~R~~~g~~p~~~-------~d~~~~~~~~--------- 374 (383) +++.|.+++|.+.|.++++++ .+.++..|+++++|+|..+.-+|-.+ .|.|...... T Consensus 452 p~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~ 531 (698) T protein:vir:10 452 PSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYV 531 (698) T ss_pred CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhh Confidence 478899999988888777665 55688999999999999987554211 1111110000 Q ss_pred -CCCCCCCCC Q lcl|Aclame:pro 375 -NETKGGDDK 383 (383) Q Consensus 375 -~~~~gGd~~ 383 (383) ...+||+.. T Consensus 532 ~~~~~~~~~~ 541 (698) T protein:vir:10 532 QRMAEGGDTG 541 (698) T ss_pred cCCcCCCCcc Confidence 122344433 No 137 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.23 E-value=9.8e-11 Score=75.46 Aligned_cols=377 Identities=8% Similarity=-0.022 Sum_probs=182.9 Q ss_pred Ccccchhccc---ccc-ccc-----------cccccchhhhhhhccCccc--------ccccHHHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFS---KRN-AKN-----------MVYPSNPAFFTTTVGGMQL--------SYVSALSALQNTNVYSVINRIA 57 (383) Q Consensus 1 Mg~~~~~~~~---~~~-~~~-----------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~i~~ia 57 (383) |.-..+.... .+. .+. ........|.....+.... ..-+.+-+..++.+.++|+.+. T Consensus 2 ~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 81 (553) T protein:vir:63 2 TKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQR 81 (553) T ss_pred cchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 1111111000 000 000 0000000110000000000 0001122334788888998776 Q ss_pred HhhccceeEeecch------------h-----------hhhhhCCC------ccCCHHHHHHHHHHHHHhcCCceEEEEe Q lcl|Aclame:pro 58 SDVSSAHFKTENTA------------T-----------LNRLESPS------SLIGRFSFWQGALMQLCLSGNDYIPLVG 108 (383) Q Consensus 58 ~~ia~~~~~v~~~~------------~-----------~~l~~~PN------~~~s~~~f~~~~~~~l~l~G~a~~~~~~ 108 (383) +.+=.--+.+.-.+ . ...-+.+| -.++.+++...++..++..|++|+...+ T Consensus 82 ~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~ 161 (553) T protein:vir:63 82 DSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAEW 161 (553) T ss_pred HhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEeee Confidence 65433344432111 1 11122232 3468899999999999999999998754 Q ss_pred cc---------ceEEeecCcceeeee-------------cCCceEEEEEEec-Cc----------------eEEEEchhh Q lcl|Aclame:pro 109 QN---------LEHIPNSDVQINYLP-------------GNMGIVYTVLESN-DR----------------PKMVLRQDQ 149 (383) Q Consensus 109 ~~---------~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~----------------~~~~~~~~~ 149 (383) .. +.++.++........ ..+..+.|.+... .+ ....+++++ T Consensus 162 ~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~~ 241 (553) T protein:vir:63 162 DRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRRQ 241 (553) T ss_pred ccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChhH Confidence 21 233333322111111 1112222332211 00 112578999 Q ss_pred eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHH----------- Q lcl|Aclame:pro 150 MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESARE----------- 218 (383) Q Consensus 150 vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~----------- 218 (383) |||+... ......+|+|.+..+...+.-............+=.+...++|+.+.. ++...+.+.. T Consensus 242 vlH~f~~--~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~ 317 (553) T protein:vir:63 242 VIHILEP--REPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELP--PEFIHSQMSGGSPNADMVGIF 317 (553) T ss_pred heecccc--cCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCC--hhhhhhhcccccccccccccc Confidence 9999743 334467899999988888876666666666666656666777775432 1111111110 Q ss_pred -----HHHHHhcC-----cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhH Q lcl|Aclame:pro 219 -----EFEKANTG-----DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSN 288 (383) Q Consensus 219 -----~~~~~~~g-----~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~ 288 (383) .......+ -+.|.+..|..|.+++.++.+-....+ .+..+...+.||+.+|||.+.|-... ++.+||. T Consensus 318 ~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~-~~F~~~~lr~iaaglGi~Ye~lt~D~-s~~nYSS 395 (553) T protein:vir:63 318 GKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVG-SEFEASLNRHLASAFGMSYEEFTRDF-SKANYSS 395 (553) T ss_pred cccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCH-HHHHHHHHHHHHhhcCCCHHHHhhhc-ccccHHH Confidence 11111111 124567888999999988876333354 57888999999999999999886533 2233433 Q ss_pred HHHH-----------HHHHHH-HHHHHHHHHH-HHHHh-hc-CCc---e--------------eeeechhhhccCHHHHH Q lcl|Aclame:pro 289 IDQI-----------KATYLA-NLNSYVNPIV-DELRL-KM-NAP---D--------------LELDIKDMLDVDDSILI 336 (383) Q Consensus 289 ~e~~-----------~~~~~~-tl~p~~~~i~-~~l~~-~l-~~~---~--------------~~fd~~~ll~~d~~~~~ 336 (383) .-+. ..++.. .+.|+.+.+. +++-. .+ ++. . .++-.-..-..|+..-+ T Consensus 396 ~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~ 475 (553) T protein:vir:63 396 IQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKET 475 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHH Confidence 3221 112222 2344433322 22211 11 010 0 11211222335999999 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCC------------------ccCCccccccCCC---------CCCC---CCCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLGAEQAQFILTRSG------------------FLPDNLPEFKPLT---------NETK---GGDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t~nE~R~~~g~~p------------------~~~~d~~~~~~~~---------~~~~---gGd~~ 383 (383) ++....+++|+.|.-|+-...|.++ ++..-.+...... ...+ +++++ T Consensus 476 ~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (553) T protein:vir:63 476 QAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQG 552 (553) T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCccccc Confidence 9999999999999999888888665 1111011100000 0001 11111 No 138 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.23 E-value=6.6e-11 Score=76.39 Aligned_cols=375 Identities=12% Similarity=0.005 Sum_probs=182.5 Q ss_pred Ccccchhccccccc-cc------cccccchhhhhhhccCcccccc----------cHHHHhhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MGLLTPKNFSKRNA-KN------MVYPSNPAFFTTTVGGMQLSYV----------SALSALQNTNVYSVINRIASDVSSA 63 (383) Q Consensus 1 Mg~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~i~~ia~~ia~~ 63 (383) |+|+++-....... +. ....+...-+..+....+...+ +.+-+..++.+..||+.+.+.+=.- T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~vVG~ 80 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAAAVGN 80 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC Confidence 99999854321111 00 0000000001111111111101 1122334788888998777666222 Q ss_pred eeEeecc----h----hh----hhhhCC--CccCCHHHHHHHHHHHHHhcCCceEEEEec----------cceEEeecCc Q lcl|Aclame:pro 64 HFKTENT----A----TL----NRLESP--SSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----------NLEHIPNSDV 119 (383) Q Consensus 64 ~~~v~~~----~----~~----~l~~~P--N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----------~~~~~~~~~~ 119 (383) -+...-. . .. ...+++ .-.++.+++...++..++..|++|+.+... .++++.++.. T Consensus 81 Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqliepd~l 160 (495) T protein:vir:10 81 GLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIEPDML 160 (495) T ss_pred CcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEechhhc Confidence 3332211 1 01 111222 335789999999999999999999987543 1333443333 Q ss_pred ceee-----------e-----ecCCceEEEEEEe-cC---------ceEEEEchhheEEecccCccccCccccCcHHHHH Q lcl|Aclame:pro 120 QINY-----------L-----PGNMGIVYTVLES-ND---------RPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESL 173 (383) Q Consensus 120 ~~~~-----------~-----~~~~~~~~~~~~~-~~---------~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~ 173 (383) .... + ...+..+.|.+.. .. .....+++++|+|+.. . .....+|+|.+..+ T Consensus 161 ~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~-~--r~gQ~RGis~la~i 237 (495) T protein:vir:10 161 ASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTV-L--TVRSDAGAPWFQLL 237 (495) T ss_pred CCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccc-c--CCCcccCcchhHHH Confidence 2111 0 0112222233222 11 1235699999999952 2 34467899876544 Q ss_pred HHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH----HHHHHHHhcCcccCCceeccCCceeEecccChh Q lcl|Aclame:pro 174 QNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA----REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTD 249 (383) Q Consensus 174 ~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~ 249 (383) .. +.-............+-.+...++|+.+..... ..... ...-......-+.|.+..|..|.+++.++.+.. T Consensus 238 ~~-l~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p 314 (495) T protein:vir:10 238 LR-LNELDQYEDAELVRKKTAALFAAFIQEATADST--GGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADV 314 (495) T ss_pred HH-HHHhhHHHHHHHHHHHHhhhheeeeecCCCccc--cccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCC Confidence 43 444444444444444445555666665432111 00000 000000111123467888999999998887633 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH-H-----------HHH-HHHHHHHH-HHHHHHh-h Q lcl|Aclame:pro 250 VFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-T-----------YLA-NLNSYVNP-IVDELRL-K 314 (383) Q Consensus 250 ~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~-~-----------~~~-tl~p~~~~-i~~~l~~-~ 314 (383) ...+ .+..+...+.||+.+|||.+.|-+.. ++.+||..-+... + +.. .+.|+.+. ++.++-. . T Consensus 315 ~~~~-~~f~~~~lr~iaaglGi~Ye~ltgD~-s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~ 392 (495) T protein:vir:10 315 GTTY-EPWLRYQLLSIAKGYGITYEMLTGDL-RGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGA 392 (495) T ss_pred CCCH-HHHHHHHHHHHHhhcCCCHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC Confidence 3344 57888889999999999999885432 2333433322211 1 111 12333322 2222211 1 Q ss_pred cCCc-e---------eeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC------------------ccCCc Q lcl|Aclame:pro 315 MNAP-D---------LELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSG------------------FLPDN 366 (383) Q Consensus 315 l~~~-~---------~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p------------------~~~~d 366 (383) +-.+ + +++-.-.....|+...+++...++++|+.|.-|+=...|+++ ++-.- T Consensus 393 i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~ 472 (495) T protein:vir:10 393 VVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISDANQLIDEYDLRLDS 472 (495) T ss_pred CCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCC Confidence 1111 1 122222233459999999999999999999998887778665 11111 Q ss_pred cccccCC----CCCCCCC--CCC Q lcl|Aclame:pro 367 LPEFKPL----TNETKGG--DDK 383 (383) Q Consensus 367 ~~~~~~~----~~~~~gG--d~~ 383 (383) .|..... ..+.+.. ++| T Consensus 473 ~p~~~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 473 DPRYVNGSGAEQKSVMEAALNNE 495 (495) T ss_pred CCCcCCCccCCCCCCCCCCCCCC Confidence 1111111 1112222 112 No 139 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.21 E-value=1.3e-10 Score=74.83 Aligned_cols=271 Identities=13% Similarity=0.078 Sum_probs=151.6 Q ss_pred eEEEEeccc---e-E--EeecCc---ceeeeecCCceEE-EEEEecCceEEEEchhheEEecccCccccCccccCcHHHH Q lcl|Aclame:pro 103 YIPLVGQNL---E-H--IPNSDV---QINYLPGNMGIVY-TVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLES 172 (383) Q Consensus 103 ~~~~~~~~~---~-~--~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~ 172 (383) +.++++... + + +...|. .......+++... ......+.....+++...|++++-...+ ..+|.|.+.. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g--~p~G~gLlr~ 78 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGA--NWLGQSLLRQ 78 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCC--CccchhhHHH Confidence 555555321 1 1 111221 2222233333332 2222334455678777777666543323 3579999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC--CC----------HHHHHHHHHHHHHHhcCcccCCceeccCCce Q lcl|Aclame:pro 173 LQNALNLDDKASKSNMSAMENQINPAGKLTISNYL--SD----------GKDLESAREEFEKANTGDNSGRLMVLPDGFD 240 (383) Q Consensus 173 ~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~ 240 (383) +.-.........++...+.+.-+.|--+.+.+... .+ .+.++.+.........|.. ..+|++.|++ T Consensus 79 ~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~--a~~iip~g~~ 156 (355) T protein:vir:78 79 AYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA--AGGYIPHGAN 156 (355) T ss_pred HHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcc--eeEeecCCce Confidence 99999999999999999999875554454444221 11 1223334444444433433 3678899999 Q ss_pred eEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--- Q lcl|Aclame:pro 241 YTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA--- 317 (383) Q Consensus 241 ~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~--- 317 (383) ++.++.+....++ .+..++.-++|+.++.-..--.+.. +...+++..+-....+.+-+.-..+.+++.||+.|+. T Consensus 157 ie~~ea~g~~~~~-~~~i~~~d~~Isk~iLGqtlTs~~~-~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~ 234 (355) T protein:vir:78 157 FTLTGVQGKLPEM-DGPIRYHDEQIARAVLAHFLTLGGD-KSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLV 234 (355) T ss_pred EEEeecCCCcccH-HHHHHHHHHHHHHHHhhhhhccccC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8877765554454 4777888888888774432212111 1223344445555556666778888899989886632 Q ss_pred ----------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHH-----HHHHHhCCCCccCCccccccCCCC------C Q lcl|Aclame:pro 318 ----------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAE-----QAQFILTRSGFLPDNLPEFKPLTN------E 376 (383) Q Consensus 318 ----------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~n-----E~R~~~g~~p~~~~d~~~~~~~~~------~ 376 (383) +.++|+.. ..+.+++++.+.++++.|+.-++ .+|+.+|++.-..++. ....... . T Consensus 235 ~lN~~~~~~~P~~~~~~~---~~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~-~~~~~~~~~~~~~~ 310 (355) T protein:vir:78 235 DQNWGPEEPAPRLVPAQL---GKEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD-GADAAAAKAAGRRR 310 (355) T ss_pred HhcCCCCCCCCEEEecCc---ChhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCc-ccCCcccccccccc Confidence 13455422 24667789999999999987764 4799999853222221 1111111 1 Q ss_pred CCCCCCC Q lcl|Aclame:pro 377 TKGGDDK 383 (383) Q Consensus 377 ~~gGd~~ 383 (383) .+.|+.. T Consensus 311 ~~~~~~~ 317 (355) T protein:vir:78 311 AKRLPGQ 317 (355) T ss_pred ccccCCc Confidence 1111111 No 140 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=98.89 E-value=9.2e-10 Score=70.12 Aligned_cols=371 Identities=12% Similarity=0.058 Sum_probs=195.6 Q ss_pred Ccccchhcccccccccccc-------cc------chhhhhhhccCccccccc-HHHHhhhHHHHHHHHHHHHhhccceeE Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVY-------PS------NPAFFTTTVGGMQLSYVS-ALSALQNTNVYSVINRIASDVSSAHFK 66 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~~~~ 66 (383) |.++.+...........+. .+ ...+...+.+........ .+-+-..|.++..+.-|+++||++.+. T Consensus 1 ~~~~rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~rL~ 80 (646) T protein:vir:10 1 MALLKPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQARLY 80 (646) T ss_pred CcccCCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhceeeee Confidence 9998765332211100000 00 001111111111100000 111223477888899999999999987 Q ss_pred eecchhh-------------hhhhCCC-ccCCHHHHHHHHHHHHHhcCCceEEEEecc------ceEEeecCcceeeeec Q lcl|Aclame:pro 67 TENTATL-------------NRLESPS-SLIGRFSFWQGALMQLCLSGNDYIPLVGQN------LEHIPNSDVQINYLPG 126 (383) Q Consensus 67 v~~~~~~-------------~l~~~PN-~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~------~~~~~~~~~~~~~~~~ 126 (383) .-.-... .+-..+= --.-..++++.+..++.+-|++|+...... -.-|.+....-. .. T Consensus 81 aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev--~~ 158 (646) T protein:vir:10 81 VTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAI--SR 158 (646) T ss_pred eeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHh--cc Confidence 6432211 1111121 123457889999999999999999742211 111222111111 11 Q ss_pred CCceEEEEEEec---CceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEE Q lcl|Aclame:pro 127 NMGIVYTVLESN---DRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTI 203 (383) Q Consensus 127 ~~~~~~~~~~~~---~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~ 203 (383) .++ .+.....+ +..-..++..+++ ||-.++.......--||+.++...+.-...+.+...+..+.-..-.|++-+ T Consensus 159 tg~-~~~i~~p~~~~g~~~v~~~~~d~l-vRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnGvLfv 236 (646) T protein:vir:10 159 TGD-EIAVRRPQQRGGSKLVLVDGQDIL-IRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAGIMFL 236 (646) T ss_pred CCC-eeeeecCccCCCCCcceecCCceE-EEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCceeee Confidence 222 22222222 4455566777774 564444444445678999999888887777776666666655555566656 Q ss_pred cCcCC------CHHHHHHHHHHHH----HHhcCccc---CCceeccC-C------ceeEecccChhHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 SNYLS------DGKDLESAREEFE----KANTGDNS---GRLMVLPD-G------FDYTQLEMKTDVFKALADNSAYSAD 263 (383) Q Consensus 204 ~~~~~------~~~~~~~~~~~~~----~~~~g~n~---g~~~vl~~-g------~~~~~l~~~~~~~~~l~e~~~~~~~ 263 (383) +..++ ++-....+...+- ..+...++ --++|+.. | -+++.+.+...-...-.++++..+. T Consensus 237 P~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~daI~ 316 (646) T protein:vir:10 237 PEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKDKAIA 316 (646) T ss_pred ccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHHHHHH Confidence 55432 1111222333322 22222121 12344432 1 1344444544333333589999999 Q ss_pred HHHHHhcCCHHH-hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------------ceeeeechhhhc Q lcl|Aclame:pro 264 QISKAFGVPSDI-LGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA-------------PDLELDIKDMLD 329 (383) Q Consensus 264 ~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~-------------~~~~fd~~~ll~ 329 (383) ++|...-|||+. ||.. ++|-|.+=.-. ..-+. .|.|.+..|++++++.++. +-+-||.+.|.. T Consensus 317 RlA~glDIppE~LLGlg-d~NHWtAWqI~-de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~Lt~ 393 (646) T protein:vir:10 317 RLASSAEIPGEVLTGIG-DANHWTAWLIS-DEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTSTLAS 393 (646) T ss_pred HHHhccCCchhheeecc-ccceeeeeeec-cccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCccccc Confidence 999999999986 5665 57766642211 12223 5999999999999987642 236788888743 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccc--------------cCC--CCCCCCCCCC Q lcl|Aclame:pro 330 VDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF--------------KPL--TNETKGGDDK 383 (383) Q Consensus 330 ~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~--------------~~~--~~~~~gGd~~ 383 (383) |. ++.+-+..++++|.+|-...|+.+|+. ..++|.. +.. +.|..-|.-+ T Consensus 394 -~p-d~~deA~qa~drGAIt~eAlrk~~Gf~---~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~ 458 (646) T protein:vir:10 394 -KP-NRLDEAIQLHERNLIKDEEVVKAGAFS---VDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALG 458 (646) T ss_pred -CC-CCcHHHHHHHHcCCccHHHHHHHhccc---ccccCChHHHHHHHHHHHhcCCccccccchhhcccc Confidence 22 233445567899999999999998754 2222211 000 0122222222 No 141 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=98.83 E-value=1.7e-09 Score=68.63 Aligned_cols=374 Identities=11% Similarity=0.073 Sum_probs=191.3 Q ss_pred Ccccc-hhcccccc-cccc---------ccccch--hhhhhhccCccccc-cc-HHHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MGLLT-PKNFSKRN-AKNM---------VYPSNP--AFFTTTVGGMQLSY-VS-ALSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg~~~-~~~~~~~~-~~~~---------~~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) |.=-+ |+.++++. +... ....++ .++..++....... .. .+-+-..+.++..+.-|+++||++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 54332 12222211 1100 000111 11112111111111 00 11122367788899999999999998 Q ss_pred Eeecchh-------------------hhhhhCC-CccCCHHHHHHHHHHHHHhcCCceEEEEeccceE--EeecCcc-ee Q lcl|Aclame:pro 66 KTENTAT-------------------LNRLESP-SSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEH--IPNSDVQ-IN 122 (383) Q Consensus 66 ~v~~~~~-------------------~~l~~~P-N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~--~~~~~~~-~~ 122 (383) ..-.-.. ..+...+ --.+...++++.+..++.+-|++|+.+....-.. +...++. +. T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:86 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 7643211 0111111 2235678999999999999999999887543211 1111111 11 Q ss_pred ee-----ecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 123 YL-----PGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINP 197 (383) Q Consensus 123 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p 197 (383) .+ ....+. .......+..-...+..+++ ||-.++.......--||+.++...+.-...+.+...+..+.-..- T Consensus 161 ~vt~~ei~~~~~~-~~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~g 238 (629) T protein:vir:86 161 ALTPEEVRASEKK-TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIG 238 (629) T ss_pred eechHHhhhccCc-eeeEcCCCCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhh Confidence 11 111121 22334444444555666666 675444444445678999988888876666665555555544444 Q ss_pred ceEEEEcCcCC----------------------CHHHHHHHHHHHH----HHhcCccc---CCceecc------CCceeE Q lcl|Aclame:pro 198 AGKLTISNYLS----------------------DGKDLESAREEFE----KANTGDNS---GRLMVLP------DGFDYT 242 (383) Q Consensus 198 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~----~~~~g~n~---g~~~vl~------~g~~~~ 242 (383) .|++-++..++ .+ ..+.+.+.+- ..+...++ --++|+. ++++.- T Consensus 239 nGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~p-a~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hl 317 (629) T protein:vir:86 239 NGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTP-AVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) T ss_pred CceeeeccCcccCccCCCCCCCCCCcccccccccc-hHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEE Confidence 44433332111 11 2222333333 22222121 1233332 233333 Q ss_pred ecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC--- Q lcl|Aclame:pro 243 QLEMKTDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNA--- 317 (383) Q Consensus 243 ~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~--- 317 (383) .+...-.+ .-.++++..+.++|...-|||+. ||.+.++|-+.+=. .. .-+.-.|.|.+..|++++++.++. T Consensus 318 kf~~ei~e--~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWq--I~dedvrlHI~P~l~~ic~AlT~~~Lrp~L 393 (629) T protein:vir:86 318 KFDNQVTE--VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQ--IGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) T ss_pred eecCchhH--HHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEE--ecccceeeecchHHHHHHHHHHhhHHHHHH Confidence 33333233 23589999999999999999985 57766776665321 11 122335899999999999987752 Q ss_pred ---------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc---------------------- Q lcl|Aclame:pro 318 ---------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN---------------------- 366 (383) Q Consensus 318 ---------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d---------------------- 366 (383) +-+-||.+.|.. |. ++.+-+..++++|.+|-...|+.+|+.--.+-| T Consensus 394 e~eGiDp~kYvvW~DaS~Lt~-dP-d~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li 471 (629) T protein:vir:86 394 MREGIDPNAYVVWHDASQLTV-DP-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) T ss_pred HHhCCCHHHhEeeecCccccc-CC-CCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchh Confidence 246788888742 22 233445567889999999999999865411111 Q ss_pred --------------cccccCCCCC--CCCCCCC Q lcl|Aclame:pro 367 --------------LPEFKPLTNE--TKGGDDK 383 (383) Q Consensus 367 --------------~~~~~~~~~~--~~gGd~~ 383 (383) .|.......+ -.+|||| T Consensus 472 ~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE 504 (629) T protein:vir:86 472 PTLAVLIPELADVEFPTPTVALPPAEEQDGDEE 504 (629) T ss_pred hhhhhhhhhhcccccCccCCCCCccccCCCccc Confidence 0000000011 1245544 No 142 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.82 E-value=2.8e-08 Score=61.95 Aligned_cols=344 Identities=8% Similarity=-0.023 Sum_probs=153.4 Q ss_pred hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEE Q lcl|Aclame:pro 28 TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLV 107 (383) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~ 107 (383) +.....+...-.............+|+.+++.+---.+...+......+.+-...-........+..+.+.+|.+|+.+. T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~ 80 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLALGVTGPDGEPDTRASRWWQANRLDSRQKLVWRMAMAQSAGYMLVG 80 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccCceecCCCchHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEe Confidence 11111110000000001122445667766665433344443333222222221111344566678888899999999875 Q ss_pred eccc----------eEEeecCcceeeeecCC--c----eEEEEEEecCceE-----------E----------------- Q lcl|Aclame:pro 108 GQNL----------EHIPNSDVQINYLPGNM--G----IVYTVLESNDRPK-----------M----------------- 143 (383) Q Consensus 108 ~~~~----------~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~-----------~----------------- 143 (383) .+.. .+-..+|.++..+.+.. . ..++....++... + T Consensus 81 ~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (434) T protein:vir:98 81 AHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARLPWGPDSW 160 (434) T ss_pred cCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeeccccccccccccc Confidence 4321 12223444433332211 0 1111100000000 0 Q ss_pred ------------EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHH Q lcl|Aclame:pro 144 ------------VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGK 211 (383) Q Consensus 144 ------------~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~ 211 (383) .+..=.|+||++. +.. ...|.|-++.....++..+.+.-......+-.+.|..++.-.......+ T Consensus 161 ~~~~~~~~~~~h~~g~vPvv~f~N~--~~~-~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~ 237 (434) T protein:vir:98 161 VYTGTADSGDVHDLGGMQLVEFARM--PDL-GEDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIKGHKFAKRTD 237 (434) T ss_pred eecccccccccCCCCccceEEeccC--CCc-CcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCcccccc Confidence 0111124555432 222 1258888888888887777666655555555555655543211100001 Q ss_pred HHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH Q lcl|Aclame:pro 212 DLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID 290 (383) Q Consensus 212 ~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e 290 (383) ........++....+ .++++.++ ++.++..++. .+++.+.+..+..+..|+..-++|++.+|+. .++.+..... T Consensus 238 ~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~~~~p~~~~~~~-~~n~Sg~Al~ 312 (434) T protein:vir:98 238 PATGMTVVDQPFVPS--PSAVWASEGENTQFGQLDA--TDLSGFLKEHASDVRDMLTISQTPTYLYATD-LVNISADTIG 312 (434) T ss_pred cccccchhhhhhhcc--ccccccCCCCCceEEEecC--cchHHHHHHHHHHHHHHhcccCCCHHHhccc-cCChHHHHHH Confidence 111111222222211 23455554 4566655554 3445566788888999999999999999853 2222221111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc------CC-----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Q lcl|Aclame:pro 291 QIKATYLANLNSYVNPIVDELRLKM------NA-----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTR 359 (383) Q Consensus 291 ~~~~~~~~tl~p~~~~i~~~l~~~l------~~-----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~ 359 (383) .....+.....-..+.+.+.|.+.+ .+ ..+++.+.+....+..+.++++.++.+.|+ +..-+++++|+ T Consensus 313 ~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~-~~e~~~~~lg~ 391 (434) T protein:vir:98 313 ALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIGY-PLDVIAEELDE 391 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHhCCC Confidence 1111111111111122222222211 11 245566667777899999999999998885 66777777765 Q ss_pred CCccCCcc---------------ccccCCCCCCCCC--CCC Q lcl|Aclame:pro 360 SGFLPDNL---------------PEFKPLTNETKGG--DDK 383 (383) Q Consensus 360 ~p~~~~d~---------------~~~~~~~~~~~gG--d~~ 383 (383) .+ .+. ........+..|. |++ T Consensus 392 ~~---~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~ 429 (434) T protein:vir:98 392 SP---ARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSG 429 (434) T ss_pred CH---HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccc Confidence 43 111 0000011111111 111 No 143 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=98.81 E-value=2e-09 Score=68.24 Aligned_cols=374 Identities=11% Similarity=0.074 Sum_probs=191.1 Q ss_pred Ccccc-hhcccccc-cccc---------ccccch--hhhhhhccCccccc-cc-HHHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MGLLT-PKNFSKRN-AKNM---------VYPSNP--AFFTTTVGGMQLSY-VS-ALSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg~~~-~~~~~~~~-~~~~---------~~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) |.=-+ |+.++++. +... ....++ .++..++....... .. .+-+-..+.++..+.-|+++||++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 54332 12222211 1100 000111 11112111111111 00 11122367788899999999999998 Q ss_pred Eeecchh-------------------hhhhhCC-CccCCHHHHHHHHHHHHHhcCCceEEEEeccceE--EeecCcc-ee Q lcl|Aclame:pro 66 KTENTAT-------------------LNRLESP-SSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEH--IPNSDVQ-IN 122 (383) Q Consensus 66 ~v~~~~~-------------------~~l~~~P-N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~--~~~~~~~-~~ 122 (383) ..-.-.. ..+...+ --.+...++++.+..++.+-|++|+.+....-.. +...++. +. T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:99 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 7643211 0111111 2235678999999999999999999887543211 1111111 11 Q ss_pred ee-----ecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 123 YL-----PGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINP 197 (383) Q Consensus 123 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p 197 (383) .+ ....+.+ ......+..-...+..+++ ||-.++.......--||+.++...+.-...+.+...+..+.-..- T Consensus 161 ~vt~~ei~~~~~~~-~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~g 238 (629) T protein:vir:99 161 ALTPEEVRASEKKT-IIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIG 238 (629) T ss_pred eechHHhhhccCce-eEEcCCCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhh Confidence 11 1111211 2333444444555556666 675444444445678999988888876666666555555544444 Q ss_pred ceEEEEcCcCC----------------------CHHHHHHHHHHHH----HHhcCccc---CCceecc------CCceeE Q lcl|Aclame:pro 198 AGKLTISNYLS----------------------DGKDLESAREEFE----KANTGDNS---GRLMVLP------DGFDYT 242 (383) Q Consensus 198 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~----~~~~g~n~---g~~~vl~------~g~~~~ 242 (383) .|++-++..++ .+ ..+.+.+.+- ..+...++ --++++. ++++.- T Consensus 239 nGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~p-a~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hl 317 (629) T protein:vir:99 239 NGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTP-AVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) T ss_pred CceeEeccCcccCccCCCCCCCCCCcccccccccc-hHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEE Confidence 44433332111 11 2222333333 22222121 1233332 233333 Q ss_pred ecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC--- Q lcl|Aclame:pro 243 QLEMKTDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNA--- 317 (383) Q Consensus 243 ~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~--- 317 (383) .+...-.+ .-.++++..+.++|...-|||+. ||.+.++|-+.+=. .. .-+.-.|.|.+..|++++++.++. T Consensus 318 kf~~ei~e--~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWq--I~dedvrlHI~P~l~~ic~AlT~~~Lrp~L 393 (629) T protein:vir:99 318 KFDNQVTE--VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQ--IGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) T ss_pred eecCchhH--HHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEE--ecccceeeecchhHHHHHHHHHhhHHHHHH Confidence 33332233 23589999999999999999985 57766776665321 11 122335899999999999987752 Q ss_pred ---------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc---------------------- Q lcl|Aclame:pro 318 ---------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN---------------------- 366 (383) Q Consensus 318 ---------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d---------------------- 366 (383) +-+-||.+.|.. |. ++.+-+..++++|.+|-...|+.+|+.--.+-| T Consensus 394 e~eGiDp~kYvvW~DaS~Lt~-dP-d~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li 471 (629) T protein:vir:99 394 MREGIDPNAYVVWHDASQLTV-DP-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) T ss_pred HHhCCCHHHhEeeecCccccc-CC-CCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchh Confidence 246788888742 22 233445567889999999999999865411111 Q ss_pred --------------cccccCCCCC--CCCCCCC Q lcl|Aclame:pro 367 --------------LPEFKPLTNE--TKGGDDK 383 (383) Q Consensus 367 --------------~~~~~~~~~~--~~gGd~~ 383 (383) .|.......+ -.+|||| T Consensus 472 ~~~a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE 504 (629) T protein:vir:99 472 PTLAVLIPELADVEFPTPTVALPPAEEQDGDEE 504 (629) T ss_pred hhhhhhhhhhcccccCccCCCCCccccCCCccc Confidence 0000000011 1245544 No 144 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=98.61 E-value=3.1e-08 Score=61.74 Aligned_cols=373 Identities=11% Similarity=0.093 Sum_probs=189.5 Q ss_pred Ccccchh--cccccccc-----c---cccc-cchhhhhhhccCccc--c-ccc-HHHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MGLLTPK--NFSKRNAK-----N---MVYP-SNPAFFTTTVGGMQL--S-YVS-ALSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg~~~~~--~~~~~~~~-----~---~~~~-~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) |.--..+ .++++... + ...+ .+++-...+..+... + ... .+-+-..+.++..+.-++++||++.+ T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCRL 80 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 5433322 11111111 1 1111 122211111111110 1 111 11122357888899999999999988 Q ss_pred Eeecchh-------------------hhh-hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-------------- Q lcl|Aclame:pro 66 KTENTAT-------------------LNR-LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-------------- 111 (383) Q Consensus 66 ~v~~~~~-------------------~~l-~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-------------- 111 (383) ..-.... ..+ ..-+--.+...++++.+...+.+-|++|+.+...+. T Consensus 81 ~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~ 160 (631) T protein:vir:10 81 VASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTR 160 (631) T ss_pred EeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccc Confidence 7532210 111 223556788999999999999999999998744221 Q ss_pred -eEEeecCcceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 112 -EHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSA 190 (383) Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~ 190 (383) ..+.+....+......++.. +....+..-......+++ ||-.++.......--||+.++...+.-...+.+...+. T Consensus 161 ~~W~~vt~~ei~~~~~g~g~~--v~lp~g~~h~~~~~~D~l-~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aa 237 (631) T protein:vir:10 161 QEWYAVSKEEIKKSNKGSGTN--IVLPTGEEHEFVKGTDII-FRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIANA 237 (631) T ss_pred cceeeccHHHHhcccCcccce--eecCCCCccceecCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHH Confidence 11112111111111112222 222233322233334544 55444333334567899999888887776666666666 Q ss_pred HhccCCcceEEEEcCcCC---------------------CHHHHHHHH-HHHHHHhcC---ccc---CCceecc------ Q lcl|Aclame:pro 191 MENQINPAGKLTISNYLS---------------------DGKDLESAR-EEFEKANTG---DNS---GRLMVLP------ 236 (383) Q Consensus 191 ~~ng~~p~~~~~~~~~~~---------------------~~~~~~~~~-~~~~~~~~g---~n~---g~~~vl~------ 236 (383) .+.-..-.|++-++..++ ++ +...+. -.|+-.-.. .++ --++++. T Consensus 238 akSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~p-a~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~i 316 (631) T protein:vir:10 238 SKSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEP-AVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQI 316 (631) T ss_pred HHHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccch-hHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHh Confidence 665555555665544322 11 222222 223222222 111 1233332 Q ss_pred CCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 237 DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQIK-ATYLANLNSYVNPIVDELRLK 314 (383) Q Consensus 237 ~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~ 314 (383) ++++.-.+...-.+ .-.++++..+.++|...-|||+. ||.+.++|-+.+=. .. .-+.-.|.|.+..|++++++. T Consensus 317 ~~i~hlkf~~ei~e--~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWq--I~dedVrlHI~P~l~lic~AlT~q 392 (631) T protein:vir:10 317 KDVKHIRFDNEITE--VAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQ--ISDEDVQLHIAPVMEIFCQALTDQ 392 (631) T ss_pred cCeeEEeecCchhH--HHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEE--ecccceeeecchHHHHHHHHHHhh Confidence 23333333332233 23589999999999999999985 57666676665321 11 122235899999999999987 Q ss_pred cCC------------ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------cccc Q lcl|Aclame:pro 315 MNA------------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFK 371 (383) Q Consensus 315 l~~------------~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~ 371 (383) ++. +-+-||.+.|.. |. ++.+-+..++++|.+|-...|+.+|+.--.+-+. ..+. T Consensus 393 ~Lrp~Le~eGvDp~kYvvW~DaS~Lt~-dP-dr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~av~ 470 (631) T protein:vir:10 393 ILRVTLAREGIDPSKYVVWYDPSQLTI-DP-DKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQDAVS 470 (631) T ss_pred HHHHHHHHhCCCHHHhEeeecCccccc-CC-CCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHHHhh Confidence 752 246788888742 22 2334455678999999999999997652111110 0000 Q ss_pred CCC------CC-----CCCCC-CC Q lcl|Aclame:pro 372 PLT------NE-----TKGGD-DK 383 (383) Q Consensus 372 ~~~------~~-----~~gGd-~~ 383 (383) .+. .+ +.+++ =+ T Consensus 471 ~dpaLip~lApl~~~~~~~v~~P~ 494 (631) T protein:vir:10 471 KDPTLIPMLAPLIAGVLKQIEFPQ 494 (631) T ss_pred cccCcchhhHHHHHHHhhhccCCC Confidence 000 00 11110 00 No 145 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.60 E-value=2.5e-09 Score=67.76 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=93.6 Q ss_pred EEEEcC---cCCCHHHHHHHHHHHHHHhcC-cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 200 KLTISN---YLSDGKDLESAREEFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDI 275 (383) Q Consensus 200 ~~~~~~---~~~~~~~~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~ 275 (383) |+++++ .+.+.+ +.++++++..... .+.+.+.+...+-+|+.++.+...+ .+........||.+-|||... T Consensus 1 V~k~~~l~~~~~~~~--~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl---~d~l~~~~~~iaa~s~iP~t~ 75 (201) T protein:vir:10 1 MWKAKGLADLCDDSD--GAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGGI---DTFLSQKFDRIVALSGIHEII 75 (201) T ss_pred CccchHHHHHhcCCh--HHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCCh---HHHHHHHHHHHHhHhcCchhh Confidence 444333 111111 2333444432222 2223455555557777777665544 345566678999999999887 Q ss_pred hccccccccchhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHH-------HHHHH Q lcl|Aclame:pro 276 LGGGTSTESQHSNIDQIKATYL-------ANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILI-------NQVSN 341 (383) Q Consensus 276 lg~~~~~~~~~~~~e~~~~~~~-------~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~-------~~~~~ 341 (383) |-+...+..+.+.....+.+|. .-|.|.++.+-+-+ ...+.+.|.+.+|...+.++++ +++++ T Consensus 76 LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~---~~~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~ 152 (201) T protein:vir:10 76 LKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFI---VTEQEWSVEFNPLSQVSDKDKSEILEKNVNSVAA 152 (201) T ss_pred hcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCceEeeCCCCCCCHHHHHHHHHHHHHHHHH Confidence 6444444343222222222321 23455555443322 1356788888999888777765 45777 Q ss_pred HHhCCCcCHHHHHHHhCCCCccC----Cccc---cccCCCCCCCCCCCC Q lcl|Aclame:pro 342 LAKSGVLGAEQAQFILTRSGFLP----DNLP---EFKPLTNETKGGDDK 383 (383) Q Consensus 342 ~~~~G~~t~nE~R~~~g~~p~~~----~d~~---~~~~~~~~~~gGd~~ 383 (383) ++++|+++++|+|+.+-..+.-+ ++.+ .......|.+.++|+ T Consensus 153 ~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 153 LIAAGIIDADEARDTLRAISTEVKIGEGSIQTEVVINESEDPLDVSANN 201 (201) T ss_pred HHHcCCCCHHHHHHHHHhcCCcCCCCCCCCCccccccccCCCCCCCCCC Confidence 89999999999999875444321 1111 111111222333333 No 146 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=98.39 E-value=4.4e-07 Score=55.41 Aligned_cols=376 Identities=12% Similarity=0.064 Sum_probs=185.6 Q ss_pred Ccccch-hccccccc-c-----ccccccchhhhhhhccCcccc-cccH-----HHHhhhHHHHHHHHHHHHhhccceeEe Q lcl|Aclame:pro 1 MGLLTP-KNFSKRNA-K-----NMVYPSNPAFFTTTVGGMQLS-YVSA-----LSALQNTNVYSVINRIASDVSSAHFKT 67 (383) Q Consensus 1 Mg~~~~-~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~v~~~i~~ia~~ia~~~~~v 67 (383) |.--+- ..++++.. . ...++-+|+-.. .-+....+ ..+. +-+-..+.++..+.-++++||++.+.. T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~~P~~~~-~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~a 79 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPMEPGRTP-SRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIA 79 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCCCcchhh-chhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEE Confidence 543321 11111111 0 111111111000 00000000 0011 111124677778888999999998875 Q ss_pred ecch----------------hhh----hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccce----EEeecCcce-- Q lcl|Aclame:pro 68 ENTA----------------TLN----RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLE----HIPNSDVQI-- 121 (383) Q Consensus 68 ~~~~----------------~~~----l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~----~~~~~~~~~-- 121 (383) -.-. ... ...-----+...++++.+..++.+-|+.|+.+...... .....+..+ T Consensus 80 s~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~ 159 (629) T protein:vir:10 80 SELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTN 159 (629) T ss_pred eeecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecH Confidence 3211 011 11112334677899999999999999999987653221 111111111 Q ss_pred eeeecCCceEEEEEEecCceEEEEchh-heEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE Q lcl|Aclame:pro 122 NYLPGNMGIVYTVLESNDRPKMVLRQD-QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGK 200 (383) Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 200 (383) ..+..++.... .+...++...+|..+ +++ ||-.++.......--||+.++...+.-.....+...+..+.-..-.|+ T Consensus 160 ~Ei~~kg~g~~-~i~lpdg~~he~~~~~D~l-~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~gnGv 237 (629) T protein:vir:10 160 DEVKNKGAGKT-DIELPDGTIHEYSKGRDVM-FRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLIGNGV 237 (629) T ss_pred HHhccccCcee-EEEcCCCceeeeeCCCeeE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHhhCce Confidence 11222221112 233333444455433 443 564444333345678999988888876666665555555544444444 Q ss_pred EEEcCcCC-----------CH----------HHHHHHHHHHH----HHhcCcccC---CceeccC----CceeEecccCh Q lcl|Aclame:pro 201 LTISNYLS-----------DG----------KDLESAREEFE----KANTGDNSG---RLMVLPD----GFDYTQLEMKT 248 (383) Q Consensus 201 ~~~~~~~~-----------~~----------~~~~~~~~~~~----~~~~g~n~g---~~~vl~~----g~~~~~l~~~~ 248 (383) +-++..++ ++ -..+.+...+- ..+...++- -++++.. --+++.|.+.. T Consensus 238 lflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~ikhLkf~~ 317 (629) T protein:vir:10 238 VFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKIFHLKIGN 317 (629) T ss_pred eEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCeeeeeecC Confidence 33322111 00 01222333332 222221211 1333321 13444555544 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCHHH-hccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC--------- Q lcl|Aclame:pro 249 DVFKALADNSAYSADQISKAFGVPSDI-LGGGTSTESQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNA--------- 317 (383) Q Consensus 249 ~~~~~l~e~~~~~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~--------- 317 (383) .-...-.++++..+.++|...-|||.. ||.+.++|-|.+=. .. .-+.-.|.|.+..|++++++.++. T Consensus 318 eite~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWq--I~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~eGiD 395 (629) T protein:vir:10 318 EITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQ--IGDEDVQLHIKPVMEVLCAAIYREVLVATLRAEGID 395 (629) T ss_pred chhHHHHhhHHHHHHHHHhccCCChhheeeccCCccceeeEE--ecccceeeecchHHHHHHHHHHhHHHHHHHHHhCCC Confidence 333333589999999999999999985 57766777665431 11 122235899999999999887652 Q ss_pred ---ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc--c------------------------- Q lcl|Aclame:pro 318 ---PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN--L------------------------- 367 (383) Q Consensus 318 ---~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d--~------------------------- 367 (383) +-+-||.+.|.. |+ ++.+-+..++++|.+|-...|+.+|+.--.+-+ . T Consensus 396 p~~Yvvw~DaS~Lt~-dP-d~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li~~~apl 473 (629) T protein:vir:10 396 PDRYVLWYDASGLTV-DP-DKTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLIKVLAPL 473 (629) T ss_pred HHHhEeeecCccccc-CC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchhhhhhhh Confidence 246788888642 32 233444567889999999999999865322111 0 Q ss_pred --ccccCCC-----CCCCCCCC-C Q lcl|Aclame:pro 368 --PEFKPLT-----NETKGGDD-K 383 (383) Q Consensus 368 --~~~~~~~-----~~~~gGd~-~ 383 (383) +...... .....|++ + T Consensus 474 l~~~l~~i~~P~p~~a~~~~~~~~ 497 (629) T protein:vir:10 474 LTDELAEIDWPEPPAALPPGEDDQ 497 (629) T ss_pred cCCccccccccCCCCcCCCCCccc Confidence 0000000 11122222 1 No 147 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.36 E-value=8.9e-07 Score=53.76 Aligned_cols=362 Identities=11% Similarity=0.038 Sum_probs=145.7 Q ss_pred Ccc----------------cchhccccccccccccccchhhhhhhccCcccc---c-ccHH--H-HhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MGL----------------LTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLS---Y-VSAL--S-ALQNTNVYSVINRIA 57 (383) Q Consensus 1 Mg~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--~-~~~~~~v~~~i~~ia 57 (383) |.- +.+.+... .++-. ....++ .+..... . +..+ . .........+|+.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~rl~---~l~~Yy---~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~ 73 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTER-TQDLG---DNTAYY---ESERRPDAVGVTVPQQMQKLLAHVGYPRLYIDAIA 73 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHH-HHHHH---HHHHHH---hccccchhcccccchhHHhhhhhcCcHHHHHHHHH Confidence 111 11111000 00000 000010 0000000 0 0000 0 111233445666666 Q ss_pred HhhccceeEeecch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccce-----------EEeecCcceeeee Q lcl|Aclame:pro 58 SDVSSAHFKTENTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLE-----------HIPNSDVQINYLP 125 (383) Q Consensus 58 ~~ia~~~~~v~~~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~-----------~~~~~~~~~~~~~ 125 (383) +.+--..+.+-+.. ....+.+-...-........+..+.+.+|.||+.+..+... +.+.+|..+..+. T Consensus 74 ~~l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~ 153 (484) T protein:vir:77 74 ARQELEGFRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYAQI 153 (484) T ss_pred hhhccCceecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEEEe Confidence 54433344433221 11112222222244556677888889999999887654221 2223333333222 Q ss_pred cC-----------------CceEE----------EEEEecCceEE------EEchhheEEecccCccccCccccCcHHH- Q lcl|Aclame:pro 126 GN-----------------MGIVY----------TVLESNDRPKM------VLRQDQMLHFRLMPDPQYRYLIGRSPLE- 171 (383) Q Consensus 126 ~~-----------------~~~~~----------~~~~~~~~~~~------~~~~~~vih~r~~~~~~~~~~~G~spi~- 171 (383) +. +...+ ++...++.... .+..=.|+||.+ ........|.|.++ T Consensus 154 D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N--~~~~~~~~G~s~i~~ 231 (484) T protein:vir:77 154 DPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPN--RTRLSDLYGTTEITP 231 (484) T ss_pred cCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEecc--ccccCccCCcccchH Confidence 11 11110 11011111000 011112466653 22333456877664 Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH--HHHHHHHHHHhcCcccCCceecc-CCceeEecccCh Q lcl|Aclame:pro 172 SLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL--ESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKT 248 (383) Q Consensus 172 ~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~ 248 (383) .+...++..+.+........+..+.|.-++. +...+.... +.-...|+. ..++++.++ ++.++..++..+ T Consensus 232 ~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~q~~~~~ 304 (484) T protein:vir:77 232 ELRSVTDAAARTLMLMQATAELMGVPQRLLF--GVKGEELGVDPETGQTLFDA-----YLARILAFEDHESKAQQFSAAE 304 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh--CCCcchhcccccccchhhhh-----hhhhhcccCCCCceeEeecCCC Confidence 2333344333333332233333333444433 111111000 111112221 123455554 457776665443 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 249 DVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLK 314 (383) Q Consensus 249 ~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~ 314 (383) ++.+.+..+..+..|+.+-++|++.+|+...+.. +.+.++. .|...|.-.++.+....+.. T Consensus 305 --~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~---Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~ 379 (484) T protein:vir:77 305 --LRNFVDALDALDRKAAAYTGLPPYYLSFSSENPA---SAEAIRSSESRLVKTVERKNKIFGGAWEQAMRVAYKVMNGG 379 (484) T ss_pred --hHHHHHHHHHHHHHHhcccCCCHHHhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Confidence 3445678888889999999999999986432211 1122111 11122222222221111100 Q ss_pred cCC---ceeeeechhhhccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCCcc--------------ccccCCCC Q lcl|Aclame:pro 315 MNA---PDLELDIKDMLDVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPDNL--------------PEFKPLTN 375 (383) Q Consensus 315 l~~---~~~~fd~~~ll~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~~~ 375 (383) -.. ..+++.+.+....+..+.++.+.+++++| +++..-+++++|+.+-+-..+ ........ T Consensus 380 ~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~~~~~~ 459 (484) T protein:vir:77 380 DIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGTMFGTD 459 (484) T ss_pred CcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhcccc Confidence 000 13556666666778999999999999876 888888888776543211110 00000011 Q ss_pred CCCCCC----CC Q lcl|Aclame:pro 376 ETKGGD----DK 383 (383) Q Consensus 376 ~~~gGd----~~ 383 (383) +..+|+ ++ T Consensus 460 ~~~~~~~~~~~~ 471 (484) T protein:vir:77 460 PSGGGNPDNPET 471 (484) T ss_pred ccCCCCCCCCCc Confidence 111111 11 No 148 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.24 E-value=2.2e-06 Score=51.61 Aligned_cols=337 Identities=10% Similarity=0.039 Sum_probs=137.8 Q ss_pred Ccccchhccc--cccccccccccchhhhhhhccCccccc----ccHH--HH--hhhHHHHHHHHHHHHhhccceeEeecc Q lcl|Aclame:pro 1 MGLLTPKNFS--KRNAKNMVYPSNPAFFTTTVGGMQLSY----VSAL--SA--LQNTNVYSVINRIASDVSSAHFKTENT 70 (383) Q Consensus 1 Mg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~--~~~~~v~~~i~~ia~~ia~~~~~v~~~ 70 (383) ..+++++... ++.++.. ....+..+...... +..+ .- +-.....-+|+.+|+.+.=--+...+. T Consensus 3 ~~~i~~L~~~~~~~~~r~~------~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~~~d~ 76 (409) T protein:vir:94 3 EKGIGYLRFKLSVHKRRAE------MRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFENDDF 76 (409) T ss_pred HHHHHHHHHHHHHHhHHHH------HHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCcccCCch Confidence 2233332221 1111100 00001111111100 0000 00 111234456666665432122222221 Q ss_pred hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc---eEEeecCcceeeeecC--CceEEE--E--------- Q lcl|Aclame:pro 71 ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL---EHIPNSDVQINYLPGN--MGIVYT--V--------- 134 (383) Q Consensus 71 ~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~--~--------- 134 (383) ..+.+. +-| +.......+..+.+++|.+|+.+..+.- ..-+.+|..+..+.+. ....+. + T Consensus 77 ~l~~i~-~~N---~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~~~~~ 152 (409) T protein:vir:94 77 TVNEIF-EEN---NPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDPITGLLTEGYAVLERDENNNV 152 (409) T ss_pred HHHHHH-Hhc---ChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEecCCCceeeeEEEEEecCCCce Confidence 122221 112 2334555777788899999998765421 1222333333322211 111100 0 Q ss_pred -------------EEecCceEEEE--c--hhheEEecccCccccCccccCcHH-HHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 135 -------------LESNDRPKMVL--R--QDQMLHFRLMPDPQYRYLIGRSPL-ESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 135 -------------~~~~~~~~~~~--~--~~~vih~r~~~~~~~~~~~G~spi-~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) +..+++..... + .=.|++|.+ .+......|.|.| +.+...++..+...-......+=.+. T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n--~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~ 230 (409) T protein:vir:94 153 VLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIH--RPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF 230 (409) T ss_pred EEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEecc--ccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcC Confidence 00111111000 0 012445542 2223345787765 33333333333333222222222333 Q ss_pred cceEEE-EcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-----CCceeEecccChhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 197 PAGKLT-ISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-----DGFDYTQLEMKTDVFKALADNSAYSADQISKAFG 270 (383) Q Consensus 197 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fg 270 (383) |.-++. .+. +.+..+.++....+ ++.++ .+.++..+ ...+++.+.+..+..+..+|..-+ T Consensus 231 pqr~i~G~d~---d~~~~~~~~~~~~~---------i~~~~~d~dg~~~~v~q~--~~~~l~~~~~~l~~~~~~~a~~t~ 296 (409) T protein:vir:94 231 PQKYVTGLSD---DAEPMETWKATVSS---------MLQFTKDEDGDKPTLGQF--TQPSMSPFTEQLRTAAAGFAGETG 296 (409) T ss_pred hhheeEecCC---CCcccchhhhhHHH---------hhcCCCCCCCCCceEEec--CCCChhHHHHHHHHHHHHHhhhcC Confidence 433332 222 22223333333333 33332 23455444 344456667899999999999999 Q ss_pred CCHHHhccccccccchhHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhcC-C---ceeeeechhhhccC---H Q lcl|Aclame:pro 271 VPSDILGGGTSTESQHSNIDQIKA-----------TYLANLNSYVNPIVDELRLKMN-A---PDLELDIKDMLDVD---D 332 (383) Q Consensus 271 Vp~~~lg~~~~~~~~~~~~e~~~~-----------~~~~tl~p~~~~i~~~l~~~l~-~---~~~~fd~~~ll~~d---~ 332 (383) +|++.+|.......+......... .|-..+...++......+..-. . ..+++.+.++...+ . T Consensus 297 lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~~~~~~ 376 (409) T protein:vir:94 297 LTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEADASML 376 (409) T ss_pred CCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEeccCCCcchHHH Confidence 999999874322121211111111 1111222222211111110000 0 12444455555444 3 Q ss_pred HHHHHHHHHHHhCC--CcCHHHHHHHhCCCCcc Q lcl|Aclame:pro 333 SILINQVSNLAKSG--VLGAEQAQFILTRSGFL 363 (383) Q Consensus 333 ~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~ 363 (383) ...++++.|++++| +...+-+++++|+..-. T Consensus 377 a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 377 SLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred HHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 55678899999999 77779999999877433 No 149 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=98.23 E-value=2.3e-06 Score=51.54 Aligned_cols=373 Identities=12% Similarity=0.050 Sum_probs=165.7 Q ss_pred Ccccchh--ccccc--------ccc-----ccccccc------hhhhhhhccCcc------cccc-cHHHHhhhHHHHHH Q lcl|Aclame:pro 1 MGLLTPK--NFSKR--------NAK-----NMVYPSN------PAFFTTTVGGMQ------LSYV-SALSALQNTNVYSV 52 (383) Q Consensus 1 Mg~~~~~--~~~~~--------~~~-----~~~~~~~------~~~~~~~~~~~~------~~~~-~~~~~~~~~~v~~~ 52 (383) ||||+++ +.++- +.+ ..+..+. ..+...+.+..+ .... ..+..........+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 9998886 22210 000 0011000 001111111111 0000 00111122344556 Q ss_pred HHHHHHhhccce--eEeecch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc--ceEEeecCcceeee--- Q lcl|Aclame:pro 53 INRIASDVSSAH--FKTENTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN--LEHIPNSDVQINYL--- 124 (383) Q Consensus 53 i~~ia~~ia~~~--~~v~~~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--~~~~~~~~~~~~~~--- 124 (383) ++..|+-+..-| +.+.+.. .+..+.+--..-....-....+.+.+..|.+++.+..+. ..+-..++..+.++ T Consensus 81 ~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ad~~~P~~~d 160 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN 160 (508) T ss_pred HHHHHhhhhCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCCeeEEEEEcCCeeEEEEEc Confidence 666666654433 4443322 222222211111223334455566677788877654322 11111111111110 Q ss_pred ---------------ec-CCceEEEEEEe----c-CceE---------------EEEch----------hh--------- Q lcl|Aclame:pro 125 ---------------PG-NMGIVYTVLES----N-DRPK---------------MVLRQ----------DQ--------- 149 (383) Q Consensus 125 ---------------~~-~~~~~~~~~~~----~-~~~~---------------~~~~~----------~~--------- 149 (383) .+ ..+.+|..... + +... ..++- ++ T Consensus 161 ~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p 240 (508) T protein:vir:15 161 TNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRP 240 (508) T ss_pred CCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcc Confidence 01 11122211000 0 0000 00000 00 Q ss_pred -eEEecccCcc--ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC-CCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 150 -MLHFRLMPDP--QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL-SDGKDLESAREEFEKANT 225 (383) Q Consensus 150 -vih~r~~~~~--~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 225 (383) ..||+....+ ......|.|.+.-+...++..+.......+-++.| .+..++. ...+ .+++....+... .+.+. T Consensus 241 ~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~-~~~l~~d~~~~~~~~~~-~~~~~ 317 (508) T protein:vir:15 241 LFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLG-QKHIAVQ-PGMLRFDDEHKPTFDTE-QNVYV 317 (508) T ss_pred eeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhc-ccceeec-hHHhcCCCCCccccCCC-CeeEE Confidence 1244432111 11234699999999998887776666666666644 4454431 1111 011111101000 01111 Q ss_pred CcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 226 GDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVN 305 (383) Q Consensus 226 g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~ 305 (383) +-+.+ -++|..++.++..-.+.+. .+..+...+.|....|++|.-+|....+..+........+....++.-..+ T Consensus 318 ~~~~~----~~~~~~i~~~~~~ir~e~~-~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~t~~~~~~ 392 (508) T protein:vir:15 318 GVLSD----DNNGLGVKDMTTPIRTVQY-KDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLT 392 (508) T ss_pred eccCC----CCCCCceeEeecccChHHH-HHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHHHHHHHHHHHH Confidence 10000 1234456666666555454 578888889999999999999987654433322211111222222233333 Q ss_pred HHHHHHHhh------------cC--------------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Q lcl|Aclame:pro 306 PIVDELRLK------------MN--------------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTR 359 (383) Q Consensus 306 ~i~~~l~~~------------l~--------------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~ 359 (383) .++..|... +. ...+.+++++-+..|.++.++.+.+++.+|+|++.+++... T Consensus 393 ~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~~i~~~-- 470 (508) T protein:vir:15 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQRN-- 470 (508) T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc-- Confidence 333333221 00 12467888888889999999999999999999999987553 Q ss_pred CCccCCc--------------cccccCCCCCCCCCCCC Q lcl|Aclame:pro 360 SGFLPDN--------------LPEFKPLTNETKGGDDK 383 (383) Q Consensus 360 ~p~~~~d--------------~~~~~~~~~~~~gGd~~ 383 (383) +++..++ .+.......+..|||.| T Consensus 471 ~g~~deea~~el~ri~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 471 YGMTDEQAAEELAKIQSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred CCCChHHHHHHHHHHHHhccccCccccccccCCCCCCC Confidence 3332221 11222333456677888 No 150 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.18 E-value=2e-06 Score=51.83 Aligned_cols=365 Identities=13% Similarity=0.032 Sum_probs=158.8 Q ss_pred Ccccchhccccccccccccccchhhhh------hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchh-- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFT------TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTAT-- 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~-- 72 (383) .-|++++...-........ ....++. ......+...-....-+.+.....+|+..++.+-.-|+.+..... T Consensus 7 ~~~~~~l~~~~~~~~~r~~-~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~d~~ 85 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRVR-LLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD 85 (456) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCCCcc Confidence 2233222111100000000 0000000 000000000000011122345677888888877777887643321 Q ss_pred -hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc------eEEEEEEecCce- Q lcl|Aclame:pro 73 -LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG------IVYTVLESNDRP- 141 (383) Q Consensus 73 -~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 141 (383) ...+.+-...-....+...+..+...+|.||+++..+. ......+|..+..+.+... .+.++...++.. T Consensus 86 ~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~ 165 (456) T protein:vir:10 86 LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESD 165 (456) T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEEEEecCCcee Confidence 11111111111334556677888899999998765432 1123344444433322111 000110001000 Q ss_pred --------------------------EEEEchh------------heEEecccCccccCccccCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 142 --------------------------KMVLRQD------------QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKA 183 (383) Q Consensus 142 --------------------------~~~~~~~------------~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~ 183 (383) ....... .++.+-++++ ..|.|.++.....++..+.+ T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N-----~~g~gd~e~vi~liDa~~~~ 240 (456) T protein:vir:10 166 FAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-----PDGMGEVEPHIDIINRINRA 240 (456) T ss_pred EEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecC-----CCCCchhhhhHHHHHHHHHH Confidence 0000000 0111111111 24777777766666655544 Q ss_pred HHHHHHHHhccCCcceEEEEcCc---CCCHHHHHHH--HHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 184 SKSNMSAMENQINPAGKLTISNY---LSDGKDLESA--REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 184 ~~~~~~~~~ng~~p~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~ 258 (383) .--........+.|--++..... ..+ +.-..+ ...|+. ..+.++.++++.++..++.. +++.+.+.. T Consensus 241 ~s~~~~~~~~~a~~~~~i~G~~~~~~~~d-~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~--~~~~~~~~l 312 (456) T protein:vir:10 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVD-ENGNAIDYASIFEA-----APGALWELPPGVDIWESQAN--DFTPMLSAI 312 (456) T ss_pred HHHHHHHHHHhhhHhHhhhccCccccccc-ccccccchhhhhhh-----hccccccCCCCcceEEeccc--ChhHHHHHH Confidence 43333333333333333321110 001 111111 112222 12346667888888766543 344456888 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHH---HHHHHHHHHHHHHHHHHhhc------CC----ceeeeech Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKAT---YLANLNSYVNPIVDELRLKM------NA----PDLELDIK 325 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~---~~~tl~p~~~~i~~~l~~~l------~~----~~~~fd~~ 325 (383) +..+..|+..-++|++.+|... ++.+. +.++.- +..-..-.-+.+...+.+.+ .+ ..++..+. T Consensus 313 ~~~i~~~~~~s~~p~~~~~~~~-~N~Sg---~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~ 388 (456) T protein:vir:10 313 KEHIRQLSSATKTPLPMLMPDS-ANQSA---EGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFE 388 (456) T ss_pred HHHHHHHHhccCCChHHhcccc-cChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEec Confidence 8899999999999999998632 22222 222211 11111111111222221111 11 13555566 Q ss_pred hhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCc--cCCcccccc-----CCCCCCCCCCCC Q lcl|Aclame:pro 326 DMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGF--LPDNLPEFK-----PLTNETKGGDDK 383 (383) Q Consensus 326 ~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~--~~~d~~~~~-----~~~~~~~gGd~~ 383 (383) +....+..+.++++.++.+.|+.+..-+++++|+.+- ...++.+.. ....+++.+++. T Consensus 389 ~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~~~ 453 (456) T protein:vir:10 389 SPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQED 453 (456) T ss_pred CCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC Confidence 6667789999999999999999999999998877642 111111111 111233444444 No 151 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.18 E-value=2e-06 Score=51.83 Aligned_cols=365 Identities=13% Similarity=0.032 Sum_probs=158.8 Q ss_pred Ccccchhccccccccccccccchhhhh------hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchh-- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFT------TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTAT-- 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~-- 72 (383) .-|++++...-........ ....++. ......+...-....-+.+.....+|+..++.+-.-|+.+..... T Consensus 7 ~~~~~~l~~~~~~~~~r~~-~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~d~~ 85 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRVR-LLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD 85 (456) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCCCcc Confidence 2233222111100000000 0000000 000000000000011122345677888888877777887643321 Q ss_pred -hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc------eEEEEEEecCce- Q lcl|Aclame:pro 73 -LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG------IVYTVLESNDRP- 141 (383) Q Consensus 73 -~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 141 (383) ...+.+-...-....+...+..+...+|.||+++..+. ......+|..+..+.+... .+.++...++.. T Consensus 86 ~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~ 165 (456) T protein:vir:10 86 LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESD 165 (456) T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEEEEecCCcee Confidence 11111111111334556677888899999998765432 1123344444433322111 000110001000 Q ss_pred --------------------------EEEEchh------------heEEecccCccccCccccCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 142 --------------------------KMVLRQD------------QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKA 183 (383) Q Consensus 142 --------------------------~~~~~~~------------~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~ 183 (383) ....... .++.+-++++ ..|.|.++.....++..+.+ T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N-----~~g~gd~e~vi~liDa~~~~ 240 (456) T protein:vir:10 166 FAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-----PDGMGEVEPHIDIINRINRA 240 (456) T ss_pred EEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecC-----CCCCchhhhhHHHHHHHHHH Confidence 0000000 0111111111 24777777766666655544 Q ss_pred HHHHHHHHhccCCcceEEEEcCc---CCCHHHHHHH--HHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 184 SKSNMSAMENQINPAGKLTISNY---LSDGKDLESA--REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 184 ~~~~~~~~~ng~~p~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~ 258 (383) .--........+.|--++..... ..+ +.-..+ ...|+. ..+.++.++++.++..++.. +++.+.+.. T Consensus 241 ~s~~~~~~~~~a~~~~~i~G~~~~~~~~d-~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~--~~~~~~~~l 312 (456) T protein:vir:10 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVD-ENGNAIDYASIFEA-----APGALWELPPGVDIWESQAN--DFTPMLSAI 312 (456) T ss_pred HHHHHHHHHHhhhHhHhhhccCccccccc-ccccccchhhhhhh-----hccccccCCCCcceEEeccc--ChhHHHHHH Confidence 43333333333333333321110 001 111111 112222 12346667888888766543 344456888 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHH---HHHHHHHHHHHHHHHHHhhc------CC----ceeeeech Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKAT---YLANLNSYVNPIVDELRLKM------NA----PDLELDIK 325 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~---~~~tl~p~~~~i~~~l~~~l------~~----~~~~fd~~ 325 (383) +..+..|+..-++|++.+|... ++.+. +.++.- +..-..-.-+.+...+.+.+ .+ ..++..+. T Consensus 313 ~~~i~~~~~~s~~p~~~~~~~~-~N~Sg---~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~ 388 (456) T protein:vir:10 313 KEHIRQLSSATKTPLPMLMPDS-ANQSA---EGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFE 388 (456) T ss_pred HHHHHHHHhccCCChHHhcccc-cChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEec Confidence 8899999999999999998632 22222 222211 11111111111222221111 11 13555566 Q ss_pred hhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCc--cCCcccccc-----CCCCCCCCCCCC Q lcl|Aclame:pro 326 DMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGF--LPDNLPEFK-----PLTNETKGGDDK 383 (383) Q Consensus 326 ~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~--~~~d~~~~~-----~~~~~~~gGd~~ 383 (383) +....+..+.++++.++.+.|+.+..-+++++|+.+- ...++.+.. ....+++.+++. T Consensus 389 ~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~~~ 453 (456) T protein:vir:10 389 SPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQED 453 (456) T ss_pred CCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC Confidence 6667789999999999999999999999998877642 111111111 111233444444 No 152 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.13 E-value=3.9e-06 Score=50.25 Aligned_cols=350 Identities=11% Similarity=0.060 Sum_probs=139.7 Q ss_pred Ccc--cchhccc--cccccccccccchhhhhhhccCccccc----ccHH-HHh-h--hHHHHHHHHHHHHhhccceeEee Q lcl|Aclame:pro 1 MGL--LTPKNFS--KRNAKNMVYPSNPAFFTTTVGGMQLSY----VSAL-SAL-Q--NTNVYSVINRIASDVSSAHFKTE 68 (383) Q Consensus 1 Mg~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~-~--~~~v~~~i~~ia~~ia~~~~~v~ 68 (383) |-- ++.+... .+.++.. ....+ ..+...... +..+ ..+ + ......+|+.+++.+-=--+.+. T Consensus 1 m~~~~i~~L~~~~~~~~~r~~---~~~~y---y~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~ 74 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVD---KRYRY---YAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTND 74 (422) T ss_pred CChHHHHHHHHHHHHHHHHHH---HHHHH---HhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeCC Confidence 211 1111111 0000000 00011 111111100 1111 011 1 12334455555553322223322 Q ss_pred cchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc--c--eEEeecCcceeeeecCC--ceE----EEEEEec Q lcl|Aclame:pro 69 NTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN--L--EHIPNSDVQINYLPGNM--GIV----YTVLESN 138 (383) Q Consensus 69 ~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--~--~~~~~~~~~~~~~~~~~--~~~----~~~~~~~ 138 (383) +...+.+... |. .......+..+.+.+|.||+.+..+. . ..-+.+|..+..+.+.. ... ++..... T Consensus 75 d~~l~~~w~~-N~---ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~~~~ 150 (422) T protein:vir:97 75 DFNAWEIFKA-NN---PDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPTTFLLTEGYAILESDSN 150 (422) T ss_pred chhHHHHHHh-cC---hHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCCCCcceeeEEEEEecCC Confidence 2222222221 33 23344567778899999999986532 1 12233444443332211 000 0000001 Q ss_pred Cc----------eEEEEc-------------hhheEEecccCccccCccccCcHH-HHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 139 DR----------PKMVLR-------------QDQMLHFRLMPDPQYRYLIGRSPL-ESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 139 ~~----------~~~~~~-------------~~~vih~r~~~~~~~~~~~G~spi-~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) +. ....+. .=.|++|.+. +.....+|.|.| +.+...++..+..........+=. T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~--~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~ 228 (422) T protein:vir:97 151 GNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHR--PDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFY 228 (422) T ss_pred CcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEeccc--CCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHh Confidence 11 000010 0124555432 222345788865 344444443333332222222222 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-----CceeEecccChhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-----GFDYTQLEMKTDVFKALADNSAYSADQISKAF 269 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~f 269 (383) +.|.-++.--+ .+....+.++... ++++.++. +.++..++ ..+++.+.+..+..+..++.+- T Consensus 229 a~pqr~i~G~d--~d~~~~~~~~~~~---------~~i~~~~~de~~~~~~v~q~~--~~~l~~~~~~l~~~~~~~a~~s 295 (422) T protein:vir:97 229 SFPQKYVLGMD--PDAKPMEKWRATV---------STLLEISKDEDGDKPTVGQFT--TASMAPFMEHLKMYASLFAGGS 295 (422) T ss_pred cchhhhhcccC--cccccCchhhhhh---------hhhhccCCCCCCCcceeeecC--CCChhHHHHHHHHHHHHHhccc Confidence 22333332111 1112222222222 23444432 24554444 3445556789999999999999 Q ss_pred cCCHHHhccccccccchhHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhcC-----CceeeeechhhhccC-- Q lcl|Aclame:pro 270 GVPSDILGGGTSTESQHSNIDQIKA-----------TYLANLNSYVNPIVDELRLKMN-----APDLELDIKDMLDVD-- 331 (383) Q Consensus 270 gVp~~~lg~~~~~~~~~~~~e~~~~-----------~~~~tl~p~~~~i~~~l~~~l~-----~~~~~fd~~~ll~~d-- 331 (383) ++|++.+|....+..+......... .|-..+.-.++.+....+ ..- ...+++.+.+....| T Consensus 296 ~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~-~~~~~~~~~~~~~~~w~p~~~~~~~ 374 (422) T protein:vir:97 296 GLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRD-EFPYLRNQFMDTVIKWEPLFEADAN 374 (422) T ss_pred CCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccchhhccceEEEccCCCCChH Confidence 9999999975432122111111111 111122222221111111 000 112445555555556 Q ss_pred -HHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCccCCccccccCCCCCCCC Q lcl|Aclame:pro 332 -DSILINQVSNLAKS--GVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKG 379 (383) Q Consensus 332 -~~~~~~~~~~~~~~--G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~g 379 (383) ....++++.|++++ |++..+-+++++|+.+.. ...+. .......| T Consensus 375 s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~-~~~~~--~~~~~~d~ 422 (422) T protein:vir:97 375 MLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGAD-KPIPA--ITEVTTDG 422 (422) T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHcCCCchh-HHHHH--HHhhhccC Confidence 45566777888888 799999999999875321 11111 11112233 No 153 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.12 E-value=4.1e-06 Score=50.11 Aligned_cols=367 Identities=9% Similarity=0.029 Sum_probs=145.1 Q ss_pred Cc-------ccchhccccccccccccccchhhhhhhccCccc---ccccHHH----HhhhHHHHHHHHHHHHhhccceeE Q lcl|Aclame:pro 1 MG-------LLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQL---SYVSALS----ALQNTNVYSVINRIASDVSSAHFK 66 (383) Q Consensus 1 Mg-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~v~~~i~~ia~~ia~~~~~ 66 (383) |. +++.+........... .....+ ..+.... ....++. .........+|+.+++.+--..+. T Consensus 8 ~~~~~~~~~~~~~l~~~~~~~~~r~-~~~~~Y---y~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~ 83 (485) T protein:vir:10 8 QEEIEDPAIARDEMVSAFEDSTQNL-KTNTSY---YEAERRPEAIGVTVPIQMQSLLAHVGYPRLYVDSIAERQAVEGFR 83 (485) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH---HhcCCcchhcCCCCChhhhhhhhhcCcHHHHHHHHHhhhccccee Confidence 11 1111110000000000 000000 0000000 0000000 011223455666666554222343 Q ss_pred eecch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----------eEEeecCcceeeeecC--CceEE Q lcl|Aclame:pro 67 TENTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----------EHIPNSDVQINYLPGN--MGIVY 132 (383) Q Consensus 67 v~~~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~~ 132 (383) +-+.. ....+.+-...-....+...+..+.+.+|.||+++..+.. ..-+.+|..+....+. +.... T Consensus 84 ~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~ 163 (485) T protein:vir:10 84 FGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVSK 163 (485) T ss_pred cCCCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCCceeE Confidence 32211 1111222222224456777888888999999998665321 1222333333322211 10100 Q ss_pred --EEE-EecCce---EEEEch-------------------------hheEEecccCccccCccccCcHHHH-HHHHHHHH Q lcl|Aclame:pro 133 --TVL-ESNDRP---KMVLRQ-------------------------DQMLHFRLMPDPQYRYLIGRSPLES-LQNALNLD 180 (383) Q Consensus 133 --~~~-~~~~~~---~~~~~~-------------------------~~vih~r~~~~~~~~~~~G~spi~~-~~~~i~~~ 180 (383) .+. ...++. ...+.. =.|+||.+ .....+.+|.|-++- +...++.. T Consensus 164 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n--~~~~~~~~G~s~i~~~v~~liDa~ 241 (485) T protein:vir:10 164 AIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPN--RTRLSDLYGTSEITPELRSMTDAA 241 (485) T ss_pred EEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEecc--ccccCCCCCccchhHHHHHHHHHH Confidence 000 000000 001111 13455543 222334568876542 33334333 Q ss_pred HHHHHHHHHHHhccCCcceEEEEcCcCCCHHH--HHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHHHHH Q lcl|Aclame:pro 181 DKASKSNMSAMENQINPAGKLTISNYLSDGKD--LESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKALADN 257 (383) Q Consensus 181 ~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~e~ 257 (383) +..........+-.+.|-.++.-.. .+... ...-...|+. ..+.++.++ ++.++..++.. .++.+.+. T Consensus 242 ~~~~s~~~~~~~~~a~p~~~i~G~~--~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~d~k~~q~~~~--~~~~~~~~ 312 (485) T protein:vir:10 242 ARILMLMQATAELMGVPQRLIFGIK--PEEIGVDPETGQTLFDA-----YLARILAFEDAEGKIQQFSAA--ELANFTNA 312 (485) T ss_pred HHHHHHHHHHHHhhcchHHHHhcCC--cccccccccccchhhhh-----cccceeccCCCCceEEeeccc--chHHHHHH Confidence 3222222222333333433333111 01000 0011111221 123455554 45666555443 34445677 Q ss_pred HHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcC----Cceeee Q lcl|Aclame:pro 258 SAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMN----APDLEL 322 (383) Q Consensus 258 ~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~----~~~~~f 322 (383) .+..+..|+.+=++|++.+|....+..+.... +.....|...|...++.+.. +..... ...+++ T Consensus 313 l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~-~~~~~~~~~~~~~i~v 391 (485) T protein:vir:10 313 LDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYR-MMKGGDVPPDMLRMET 391 (485) T ss_pred HHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCcccceeeeE Confidence 88888999999999999987543221111000 11111222222222221111 111000 124566 Q ss_pred echhhhccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCCcccc------------ccCCCCCCCCCCCC Q lcl|Aclame:pro 323 DIKDMLDVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPDNLPE------------FKPLTNETKGGDDK 383 (383) Q Consensus 323 d~~~ll~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~d~~~------------~~~~~~~~~gGd~~ 383 (383) .+.+.+..+..+.++++.+++++| +++...+++++|+.+-+-..+-. ......+..+.+++ T Consensus 392 ~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~ 466 (485) T protein:vir:10 392 VWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTMVDPNPTVPGS 466 (485) T ss_pred EecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC Confidence 666667789999999999999866 89999999888766422111000 00000111111111 No 154 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.05 E-value=6.1e-06 Score=49.19 Aligned_cols=368 Identities=11% Similarity=0.039 Sum_probs=141.3 Q ss_pred Ccccchhccccccccc------cccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee------ Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN------MVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE------ 68 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~------ 68 (383) .-+++++.......+. ..+.+... .-......+... ...-+.......+|+.+++.+---.+.+. T Consensus 10 ~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~-i~~~~~~~~~~~--~~~~~~~n~~~~ivd~~a~~l~~~Gf~~~~~~~~~ 86 (488) T protein:vir:23 10 EKLRDQLLDAFENKQNELKSSKAYYDAERR-PDAIGLAVPLDM--RKYLAHVGYPRTYVDAIAERQELEGFRIPSANGEE 86 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhcCcccchhh--hhhhhhcchHHHHHHHHHHhhhccceeccCCcccc Confidence 3233322111000000 00000000 000000000000 00011223445566666653321122211 Q ss_pred --cch---hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----------eEEeecCcceeeeecC--C-- Q lcl|Aclame:pro 69 --NTA---TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----------EHIPNSDVQINYLPGN--M-- 128 (383) Q Consensus 69 --~~~---~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----------~~~~~~~~~~~~~~~~--~-- 128 (383) ... ....+.+-...-........+..+.+.+|.||+++..... .+-..+|..+..+.++ + T Consensus 87 ~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~d~~~~~~ 166 (488) T protein:vir:23 87 PESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVPLIRVEPPTALYAEVDPRTRKV 166 (488) T ss_pred cccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcceEEEeccceeEEEEecCCCce Confidence 111 1111111111113455667788888999999987643210 1112233332222211 1 Q ss_pred -------------ceEE----------EEEEecCceE------EEEchhheEEecccCccccCccccCcHHH-HHHHHHH Q lcl|Aclame:pro 129 -------------GIVY----------TVLESNDRPK------MVLRQDQMLHFRLMPDPQYRYLIGRSPLE-SLQNALN 178 (383) Q Consensus 129 -------------~~~~----------~~~~~~~~~~------~~~~~~~vih~r~~~~~~~~~~~G~spi~-~~~~~i~ 178 (383) ...+ ++...++... ..+..=.|+||++ .....+.+|.|-++ .+...++ T Consensus 167 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n--~~~~~~~~G~s~i~~~v~~l~D 244 (488) T protein:vir:23 167 LYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISN--RTRLSDLYGTSEISPELRSVTD 244 (488) T ss_pred EEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEecc--ccccCCcCCccchhhhHHHHHH Confidence 1110 0000011100 0111112556653 22233456777664 2333333 Q ss_pred HHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHH--HHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHH Q lcl|Aclame:pro 179 LDDKASKSNMSAMENQINPAGKLTISNYLSDGKDL--ESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALAD 256 (383) Q Consensus 179 ~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e 256 (383) ..+..........+-.+.|..++. +...+.... +.-...|+. ..+++..+++|.+.+-.+.....++.+.+ T Consensus 245 a~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~g~~~~~~q~~~~~~~~~~~ 317 (488) T protein:vir:23 245 AAAQILMNMQGTANLMAIPQRLIF--GAKPEELGINAETGQRMFDA-----YMARILAFEGGEGAHAEQFSAAELRNFVD 317 (488) T ss_pred HHHHHHHHHHHHHHHhhhHHHHHh--CCCcccccccccccchhhhh-----hhhhhccCCCCCCceeEecCCCChHHHHH Confidence 333222222222222223333322 111111000 111112221 12346666666443333333344455567 Q ss_pred HHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCC---ce Q lcl|Aclame:pro 257 NSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMNA---PD 319 (383) Q Consensus 257 ~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~~---~~ 319 (383) ..+..+..|+..-++|++.+|....+.. +.+.++. .|...|...++.+....+..-.. .. T Consensus 318 ~l~~~i~~~~~~~~~p~~~~g~~~~n~~---Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~ 394 (488) T protein:vir:23 318 ALDALDRKAASYSGLPPQYLSSSSDNPA---SAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDIPTEYYR 394 (488) T ss_pred HHHHHHHHHhcccCCCHHHhccccCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhcc Confidence 8888889999999999999876432211 1122211 12222222222222111110000 13 Q ss_pred eeeechhhhccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCCccc----------------cccCC-----CCC Q lcl|Aclame:pro 320 LELDIKDMLDVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPDNLP----------------EFKPL-----TNE 376 (383) Q Consensus 320 ~~fd~~~ll~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~d~~----------------~~~~~-----~~~ 376 (383) +++.+.+-...+..+.++++.+++++| +++..-+++++|+.+-+-..+- ..... .+. T Consensus 395 i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (488) T protein:vir:23 395 METVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLGLIGSLYGASTPEGKPGE 474 (488) T ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCC Confidence 444555555668889999999999866 8899988888876442211100 00000 011 Q ss_pred CCCC---CCC Q lcl|Aclame:pro 377 TKGG---DDK 383 (383) Q Consensus 377 ~~gG---d~~ 383 (383) .+.| |+| T Consensus 475 ~~~~~~~~~e 484 (488) T protein:vir:23 475 APVGEPPAPE 484 (488) T ss_pred CCCCCCCCCC Confidence 1111 222 No 155 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.02 E-value=1.3e-06 Score=52.89 Aligned_cols=373 Identities=13% Similarity=0.054 Sum_probs=154.9 Q ss_pred Ccccchhccccccccc------cccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchh-- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN------MVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTAT-- 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~-- 72 (383) +-++.++......... ..+.+.... -......+...-.....+.......+|+..++.+-.-|+.+..... T Consensus 7 ~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i-~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~~~d~~ 85 (456) T protein:vir:79 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-PELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD 85 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCh-hhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecCCCCCcc Confidence 2232222111100000 000000000 0000000100000011112235577888888877777887643221 Q ss_pred -hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC-----------------ceE Q lcl|Aclame:pro 73 -LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM-----------------GIV 131 (383) Q Consensus 73 -~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------------~~~ 131 (383) ...+.+-...-....+...+..+...+|.||+.+..+. ..+...+|..+....++. ... T Consensus 86 ~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~~~ 165 (456) T protein:vir:79 86 LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAESD 165 (456) T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEEcCCCCCceEEEEEEEEecCCcee Confidence 11111111111344566778888899999998764431 122334444443332211 000 Q ss_pred EEEEEecCceEE----------------E------EchhheEEecccCc-cccCccccCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 132 YTVLESNDRPKM----------------V------LRQDQMLHFRLMPD-PQYRYLIGRSPLESLQNALNLDDKASKSNM 188 (383) Q Consensus 132 ~~~~~~~~~~~~----------------~------~~~~~vih~r~~~~-~~~~~~~G~spi~~~~~~i~~~~~~~~~~~ 188 (383) +.......+... . ....++-|.-...+ -.+....|.|-++.....++..+....-.. T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~~s~~~ 245 (456) T protein:vir:79 166 FAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLL 245 (456) T ss_pred EEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHHHH Confidence 000000000000 0 00000111000000 000012466666666555554443322222 Q ss_pred HHHhccCCcceEEEEcC-c--CCCHHHHHHH--HHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHH Q lcl|Aclame:pro 189 SAMENQINPAGKLTISN-Y--LSDGKDLESA--REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSAD 263 (383) Q Consensus 189 ~~~~ng~~p~~~~~~~~-~--~~~~~~~~~~--~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~ 263 (383) ...+..+.|..++.-.. . ..+ +.-+.+ ...|.. ..+.++.+++|.++..++.+ +++.+.+..+..+. T Consensus 246 ~~~~~~a~~~~~~~G~~~~~~~~d-~~g~~i~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~--~~~~~~~~l~~~i~ 317 (456) T protein:vir:79 246 STMAIQAFRQRALKSSEHRLPKVD-ENGNAIDYASIFEA-----APGALWELPPGVDIWESQTN--DFTPMLSAIKEHIR 317 (456) T ss_pred HHHHHHhhHHHHHhcCCccccccc-ccccccchhhhhhh-----hccccccCCCCcceeeeccc--ChHHHHHHHHHHHH Confidence 22233222332222111 0 001 110111 112221 12345667788887765543 34445688888999 Q ss_pred HHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCC----ceeeeechhhhccCHH Q lcl|Aclame:pro 264 QISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLK------MNA----PDLELDIKDMLDVDDS 333 (383) Q Consensus 264 ~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~------l~~----~~~~fd~~~ll~~d~~ 333 (383) .|+..-++|++.+|+.. ++.+....+.....+..-..-.-+.+...|.+. +.+ ..++..+.+....+.. T Consensus 318 ~i~~~t~~p~~~~~~~~-~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~w~~~~~~s~~ 396 (456) T protein:vir:79 318 QLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLG 396 (456) T ss_pred HHHhhcCCChhHhcccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEeCCCCCcCHH Confidence 99999999999998532 222221111111111100000111111112111 111 1345555566667889 Q ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCc--cCCcccccc-----CCCCCCCCCCCC Q lcl|Aclame:pro 334 ILINQVSNLAKSGVLGAEQAQFILTRSGF--LPDNLPEFK-----PLTNETKGGDDK 383 (383) Q Consensus 334 ~~~~~~~~~~~~G~~t~nE~R~~~g~~p~--~~~d~~~~~-----~~~~~~~gGd~~ 383 (383) +.++++.++++.|+.+...+++++|+.+- ...++.+.. ....++..||+. T Consensus 397 ~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e~~~~~~~~~~~~~~~ 453 (456) T protein:vir:79 397 EKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQED 453 (456) T ss_pred HHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhHhhcCCCC Confidence 99999999999999999988888877542 111111111 111334456666 No 156 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=97.93 E-value=1.1e-05 Score=47.84 Aligned_cols=374 Identities=11% Similarity=0.025 Sum_probs=163.4 Q ss_pred Ccccchhccc--cc----ccccccccc-------ch-------hhhhhhccCcc-ccc------ccHHHHhhhHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFS--KR----NAKNMVYPS-------NP-------AFFTTTVGGMQ-LSY------VSALSALQNTNVYSVI 53 (383) Q Consensus 1 Mg~~~~~~~~--~~----~~~~~~~~~-------~~-------~~~~~~~~~~~-~~~------~~~~~~~~~~~v~~~i 53 (383) ||+|+++... +- ..++..... .+ .+...+.+... ... ...+..........++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 9998875221 11 111110000 00 11111111100 000 0011122223445555 Q ss_pred HHHHHhhcccee--EeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc----------eEEeecCc-- Q lcl|Aclame:pro 54 NRIASDVSSAHF--KTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL----------EHIPNSDV-- 119 (383) Q Consensus 54 ~~ia~~ia~~~~--~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~----------~~~~~~~~-- 119 (383) +.+|+-+..-|. .+.+......+.+--..-.........+...+..|.+++.+..+.. ..+|+... T Consensus 81 ~~~A~lv~~e~~~i~v~d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~~v~ad~~~P~~~~~~ 160 (522) T protein:vir:47 81 KKIASLVYNEQATITTKNEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKVRVAFIQAPVFFPLESNTQ 160 (522) T ss_pred HHHhhhhcCCcceeecCChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcCCceEEEEEcCCceEEEEEcCC Confidence 566665544332 3333333333322111222334444555555666777766543211 12222111 Q ss_pred ce-------eeee--cCCceEEEEEEe----------------------------c-C----ceEE---EEc-----hhh Q lcl|Aclame:pro 120 QI-------NYLP--GNMGIVYTVLES----------------------------N-D----RPKM---VLR-----QDQ 149 (383) Q Consensus 120 ~~-------~~~~--~~~~~~~~~~~~----------------------------~-~----~~~~---~~~-----~~~ 149 (383) .+ .... +..+.+|..... . . +..+ .++ +++ T Consensus 161 ~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~ 240 (522) T protein:vir:47 161 DVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLEPV 240 (522) T ss_pred ceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCCCc Confidence 00 0000 111111110000 0 0 0000 000 000 Q ss_pred ----------eEEecccCccc--cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----EEcCcCCCHHH Q lcl|Aclame:pro 150 ----------MLHFRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKL-----TISNYLSDGKD 212 (383) Q Consensus 150 ----------vih~r~~~~~~--~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~-----~~~~~~~~~~~ 212 (383) ..|||...++. .....|.|...-+...++..+........-++-|-+ +.++ .........+. T Consensus 241 ~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~-~i~v~~~~l~~~~~~~~g~~ 319 (522) T protein:vir:47 241 TVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQR-RVIVPEHLTQRQYQRPDGTI 319 (522) T ss_pred eEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeecchHHhccCCCCCCccc Confidence 23555432221 123469999998888888777666666666665543 2222 21111111100 Q ss_pred H--HHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH Q lcl|Aclame:pro 213 L--ESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID 290 (383) Q Consensus 213 ~--~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e 290 (383) . ..+ ..-++.+.+.+. -.+++-+++.++..-.+.+. .+..+...+.|+...|+++..+|....+..+..... T Consensus 320 ~~~~~f-d~~~~~f~~~~~----~~~~~~~i~~~~~~ir~e~~-~~~~~~~l~~i~~~~gls~~tf~~~~~~~kTAtEi~ 393 (522) T protein:vir:47 320 DFRPRF-DVEQNVYMQIGG----SSMDAGGITDLTSPIRANDY-ILAISEGLKLFEMQIGVSSGMFTFDGQGMKTATEIV 393 (522) T ss_pred cccccc-CcccceEeecCC----CCCCCCcceeeccccChHHH-HHHHHHHHHHHHHHhCCCccccCccccccccHHHHH Confidence 0 000 001111222111 01233346666665555554 578888889999999999999987655443332222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------------cC------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHH Q lcl|Aclame:pro 291 QIKATYLANLNSYVNPIVDELRLK------------MN------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQ 352 (383) Q Consensus 291 ~~~~~~~~tl~p~~~~i~~~l~~~------------l~------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE 352 (383) ...+....++.-+.+.++.+|... ++ ...+.+++++-+..|.++.++...+++.+|+|++.+ T Consensus 394 s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~s~e~ 473 (522) T protein:vir:47 394 SENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFSTKKR 473 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHH Confidence 222222223333333333333211 11 135778888888899999999999999999999999 Q ss_pred HHHHhCCCCccCCc-------------------cccccCCCCCCCCCCCC Q lcl|Aclame:pro 353 AQFILTRSGFLPDN-------------------LPEFKPLTNETKGGDDK 383 (383) Q Consensus 353 ~R~~~g~~p~~~~d-------------------~~~~~~~~~~~~gGd~~ 383 (383) ++..+ .++..++ ..-........+.|||+ T Consensus 474 ~i~~~--~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~ 521 (522) T protein:vir:47 474 AIGKT--LNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEKADDK 521 (522) T ss_pred HHHhc--CCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCC Confidence 87553 2322211 01111112223455666 No 157 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=97.90 E-value=1.2e-05 Score=47.53 Aligned_cols=373 Identities=8% Similarity=-0.035 Sum_probs=144.9 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccc---cHHH--H--hhhHHHHHHHHHHHHhhccceeEeecchhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYV---SALS--A--LQNTNVYSVINRIASDVSSAHFKTENTATL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~--~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~ 73 (383) +.++.++.......+.... ....+..+......+ .+.. . .-......||+.+++.+----+.+-+.... T Consensus 17 ~~~~~~L~~~~~~~~~~~~----~~~~Yy~G~~~~~~~~~~~p~~~r~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~d~~~~ 92 (474) T protein:vir:81 17 NALINGLLAQIENLRWKNL----LRTSYYENKRTIQYVGTLIPPQYFNLGLVLGWTGKAVDALARRCNLEGFVWPDGDLD 92 (474) T ss_pred HHHHHHHHHHHHHHhhHHH----HHHHHhccCCChhhccccccHHHHHHHhhcChHHHHHHHHHhhhcccceECCCCCcc Confidence 4444433222111110000 000001111110000 0111 0 112344557777776554344443322111 Q ss_pred -hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc-----ceEEeecCcceeeeecCC--ceE----EEEEEecCce Q lcl|Aclame:pro 74 -NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-----LEHIPNSDVQINYLPGNM--GIV----YTVLESNDRP 141 (383) Q Consensus 74 -~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~ 141 (383) .-+.+....=+.......+..+.+.+|.+|+.+.... ..+-+.+|.++....+.. ... ++....++.. T Consensus 93 ~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~~~al~~~~~~~~g~~ 172 (474) T protein:vir:81 93 SLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRRGLNNLLSIIDKDKEGKV 172 (474) T ss_pred chHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCCcceeeeEEEEEcCCCcE Confidence 1011111111223455667778889999999876421 112233333333222111 000 0000000000 Q ss_pred E--EEEchh-------------------------heEEecccCccccCccccCcHH-HHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 142 K--MVLRQD-------------------------QMLHFRLMPDPQYRYLIGRSPL-ESLQNALNLDDKASKSNMSAMEN 193 (383) Q Consensus 142 ~--~~~~~~-------------------------~vih~r~~~~~~~~~~~G~spi-~~~~~~i~~~~~~~~~~~~~~~n 193 (383) . ..+.++ .|++|.+ .+......|.|.+ +.+...++..+...-......+= T Consensus 173 ~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n--~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~ 250 (474) T protein:vir:81 173 LSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPY--KPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDV 250 (474) T ss_pred EEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecc--cccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHH Confidence 0 011111 2444432 2222234677755 23333333333222222222222 Q ss_pred cCCcce-EEEEcCc-CCC--HHHHHHHHHHHHHHhcCc-ccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 194 QINPAG-KLTISNY-LSD--GKDLESAREEFEKANTGD-NSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKA 268 (383) Q Consensus 194 g~~p~~-~~~~~~~-~~~--~~~~~~~~~~~~~~~~g~-n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~ 268 (383) .+.|.- ++-.... ..+ ......++....+.+.-. +..+......+.++-.++. .+++.+.+..+..+..+|.. T Consensus 251 ~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~--a~l~~~~~~l~~~~~~~a~~ 328 (474) T protein:vir:81 251 FSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPA--ASPDAHWSDINGLAKLFARE 328 (474) T ss_pred hcchhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccccccccccccCC--CChhHHHHHHHHHHHHHHhh Confidence 222333 3322211 111 111233444444433211 1111111223345554443 34565678899999999999 Q ss_pred hcCCHHHhccccccccchhHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCC------ceeeeechhhh Q lcl|Aclame:pro 269 FGVPSDILGGGTSTESQHSNIDQIK--------------ATYLANLNSYVNPIVDELRLKMNA------PDLELDIKDML 328 (383) Q Consensus 269 fgVp~~~lg~~~~~~~~~~~~e~~~--------------~~~~~tl~p~~~~i~~~l~~~l~~------~~~~fd~~~ll 328 (383) -|+|++.||....++. +..+.+. ..|-..+.-.++......+..-.. ..++..+.+.. T Consensus 329 t~iP~~~lG~~~~~np--~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~ 406 (474) T protein:vir:81 329 ASLPDTAVAISGLSNP--TSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPR 406 (474) T ss_pred hCCCHHHhcccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCC Confidence 9999999986432321 1112221 111122222222111111100000 12344455555 Q ss_pred ccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCC----cc-------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 329 DVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPD----NL-------PEFKPLTNETKGGDDK 383 (383) Q Consensus 329 ~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~----d~-------~~~~~~~~~~~gGd~~ 383 (383) ..+..++++++.++++.| +....-+++++|+.+-.=. +. +.........++|.-| T Consensus 407 ~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 407 YLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred ccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 678899999999999987 3444556777777642100 00 0000001122344444 No 158 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=97.78 E-value=1.9e-05 Score=46.41 Aligned_cols=372 Identities=10% Similarity=0.009 Sum_probs=158.6 Q ss_pred Ccccchhcccccccccccccc----chhhhhhhccCccccc------cc----HHHHhhhHHHHHHHHHHHHhhccceeE Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPS----NPAFFTTTVGGMQLSY------VS----ALSALQNTNVYSVINRIASDVSSAHFK 66 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~----~~~~~~~~~v~~~i~~ia~~ia~~~~~ 66 (383) |++-+-+-.-.....-...+. ...+. .+..+..... .. ....+.......+++..|+-+.+-|.. T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i~~~~a~~l~~~p~~ 94 (496) T protein:vir:38 16 MGLLKALKDVKDHKKVNANDEDYKYIDMWK-RLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVK 94 (496) T ss_pred hccchhhHHHHhcCCCcCCHHHHHHHHHHH-HHhcCCCchhhcchhccCCCccccceeecchHHHHHHHHhhhhhCCcce Confidence 322111100000011000000 00011 1111110000 00 011122345566777777777665544 Q ss_pred e--ecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeee-cC------------- Q lcl|Aclame:pro 67 T--ENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLP-GN------------- 127 (383) Q Consensus 67 v--~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~-~~------------- 127 (383) + .+......+.+-...-...+-...++......|.+|+.+..+. ...-..++..+.+.. +. T Consensus 95 i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~ 174 (496) T protein:vir:38 95 INIDDKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSNDSENVDECVIANSFH 174 (496) T ss_pred EeeCChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEEcccceEEEEecCCcEEEEEEEEEEE Confidence 3 3433333333322233455566677778889999999876542 111112222222111 11 Q ss_pred -CceEEEEE---Ee-cCceE---------------EEEch------------------hheEEecccCcc--ccCccccC Q lcl|Aclame:pro 128 -MGIVYTVL---ES-NDRPK---------------MVLRQ------------------DQMLHFRLMPDP--QYRYLIGR 167 (383) Q Consensus 128 -~~~~~~~~---~~-~~~~~---------------~~~~~------------------~~vih~r~~~~~--~~~~~~G~ 167 (383) ++..|+.. .. ++... ..++- --+.|++..-.+ ......|. T Consensus 175 ~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~ 254 (496) T protein:vir:38 175 KNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGI 254 (496) T ss_pred eCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCC Confidence 11111110 00 00000 00000 012234321111 12224599 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC------CHHHHHHHHHHHHHHhcCcccCCceeccCCcee Q lcl|Aclame:pro 168 SPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS------DGKDLESAREEFEKANTGDNSGRLMVLPDGFDY 241 (383) Q Consensus 168 spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~ 241 (383) |.++-+...++..+.+.....+-++.+ ++..++ +.... +.+....+....+.+. .....-.+++..+ T Consensus 255 Sd~~~~~~lid~ld~~~s~~~~~~~~~-~~~i~v--~~~~l~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~i 327 (496) T protein:vir:38 255 SVYANALDTLKTLDLMFDSYYQEFKLG-KKKVLV--PSSFVKTAVNLDGSTTQYFDSTDEAFF----LYQGDQDDNGKAI 327 (496) T ss_pred chHhhHHHHHHHHHHHHHHHHHHHhhc-ccceec--chHHhhccCCCCCccccCCCCccceEE----EeecCCCcccccc Confidence 999988888876666655555556653 344333 11110 0000000000000000 0000111223345 Q ss_pred EecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH-----------HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 242 TQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI-----------KATYLANLNSYVNPIVDE 310 (383) Q Consensus 242 ~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~-----------~~~~~~tl~p~~~~i~~~ 310 (383) +.++..-..... .+..+.....|+...|+||..+|...++..+....... ...+...|..+++.+... T Consensus 328 ~~~~~~i~~e~~-~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~ 406 (496) T protein:vir:38 328 KDISVEIRSTEF-IESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEV 406 (496) T ss_pred eeeccccCHHHH-HHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 555544333343 46777888999999999999998754443322111111 111222333333333322 Q ss_pred HHhh--c-----CCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc----cccccC------- Q lcl|Aclame:pro 311 LRLK--M-----NAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN----LPEFKP------- 372 (383) Q Consensus 311 l~~~--l-----~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d----~~~~~~------- 372 (383) .+.. + ....+.|+++.-+..|..+.++.+.+++..|+++...+++.. +.+...+ +.+... T Consensus 407 ~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~--~~~~d~ea~~el~ri~~E~~~~~~ 484 (496) T protein:vir:38 407 GKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRA--WNITEAEADEWAEMLAKEKQAEMP 484 (496) T ss_pred HHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc--CCCChHHHHHHHHHHHHhhhccCc Confidence 1110 1 123567777777788999999999999999999998887643 2222111 011110 Q ss_pred -CCCCCCCCCCC Q lcl|Aclame:pro 373 -LTNETKGGDDK 383 (383) Q Consensus 373 -~~~~~~gGd~~ 383 (383) +.....+||+| T Consensus 485 ~~d~~~~~~~~e 496 (496) T protein:vir:38 485 NNDMNGIFGEEE 496 (496) T ss_pred cccccCCCCCCC Confidence 01112477777 No 159 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=97.75 E-value=2.2e-05 Score=46.12 Aligned_cols=373 Identities=10% Similarity=0.006 Sum_probs=158.7 Q ss_pred Ccccchhccccccccccccccch---hhhhhhccCccccc----------ccHHHHhhhHHHHHHHHHHHHhhcccee-- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNP---AFFTTTVGGMQLSY----------VSALSALQNTNVYSVINRIASDVSSAHF-- 65 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~i~~ia~~ia~~~~-- 65 (383) |+..+.+-..-....-....... .-+-.+..+..... .-....+........++..|+-+..=|. T Consensus 16 ~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~~~iv~~~a~~l~~ep~~i 95 (499) T protein:vir:80 16 MGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKI 95 (499) T ss_pred hccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccccceeecchHHHHHHHHHHhhhCCcceE Confidence 33322111000000000000000 00111111110000 0001122334455666777776655444 Q ss_pred EeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeee-cCC------------- Q lcl|Aclame:pro 66 KTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLP-GNM------------- 128 (383) Q Consensus 66 ~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~-~~~------------- 128 (383) .+.+......+.+-...-....-...++...+..|.+++.+..+. ...-..++..+.++. +.+ T Consensus 96 ~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~ 175 (499) T protein:vir:80 96 NIDDETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSNDSENVDECLIANSFHK 175 (499) T ss_pred eeCCHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEEcCCceEEEEecCCCeEEEEEEEEEee Confidence 444444444443332233344455566666778899998876542 122122222222111 111 Q ss_pred -ceEEEEEE---ec-----------------Cce--EEEEchh------------------heEEecccCcc--ccCccc Q lcl|Aclame:pro 129 -GIVYTVLE---SN-----------------DRP--KMVLRQD------------------QMLHFRLMPDP--QYRYLI 165 (383) Q Consensus 129 -~~~~~~~~---~~-----------------~~~--~~~~~~~------------------~vih~r~~~~~--~~~~~~ 165 (383) +..|.... .. +.. ...++.. -+.|+|..-.+ ...... T Consensus 176 ~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~~~~~spl 255 (499) T protein:vir:80 176 NNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSLTRPTFIYIKPNIANNKNLTSPL 255 (499) T ss_pred cCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCCCccceEeecCCccccccCCCcc Confidence 11110000 00 000 0011111 12345432111 112235 Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC------CHHHHHHHHHHHHHHhcCcccCCceeccCCc Q lcl|Aclame:pro 166 GRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS------DGKDLESAREEFEKANTGDNSGRLMVLPDGF 239 (383) Q Consensus 166 G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~ 239 (383) |.|.+.-+...++..+.......+-++.+- ...++ +..+. +.+....+.... +.+...+ ..--+++- T Consensus 256 G~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~v--~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~---~~~~~~~~ 328 (499) T protein:vir:80 256 GISVYANALDTLKTLDLMFDSYYQEFKLGK-KKVLV--PSSFVKTAVNLDGSTTQYFDSTD-EAFFLYQ---GEQDDNGK 328 (499) T ss_pred CCchHhhHHHHHHHHHHHHHHHHHHHHhcc-cceec--chhhhhccCCCCCCcccCCCccc-ceeeEee---ccCCCCcC Confidence 999999888888876666666666666643 33332 11110 000000000000 0000000 00112233 Q ss_pred eeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh----- Q lcl|Aclame:pro 240 DYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLK----- 314 (383) Q Consensus 240 ~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~----- 314 (383) .++.++..-..... .+..+...++|....|+++..+|....+..+........+....++....+.+++.|... T Consensus 329 ~i~~~~~~ir~e~~-~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~~~~~~~~~~l~~l~~~il 407 (499) T protein:vir:80 329 AIKDISVEIRSTEF-IESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSIL 407 (499) T ss_pred ceeEecCcCChHHH-HHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 45666555444343 477788889999999999999987654433221111111111122222223333332221 Q ss_pred -----c--C------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc----ccccc------ Q lcl|Aclame:pro 315 -----M--N------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN----LPEFK------ 371 (383) Q Consensus 315 -----l--~------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d----~~~~~------ 371 (383) + . ...+.+++++-+..|.++.++.+.+++..|+|+..+++... .++...+ +.+.. T Consensus 408 ~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~--~~~~d~ea~~el~~i~~E~~~~ 485 (499) T protein:vir:80 408 EVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRA--WNITEAEADEWAEMLAKEKQAE 485 (499) T ss_pred HHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhc--CCCChHHHHHHHHHHHHHhhcC Confidence 0 1 13578888888888999999999999999999999887543 1222111 11111 Q ss_pred CCCCC--CCCCCCC Q lcl|Aclame:pro 372 PLTNE--TKGGDDK 383 (383) Q Consensus 372 ~~~~~--~~gGd~~ 383 (383) .+... .-.|++| T Consensus 486 ~~~~d~~g~~ge~e 499 (499) T protein:vir:80 486 IPNNDMTGIFGEEE 499 (499) T ss_pred CCCCCccccCCCCC Confidence 11111 1135666 No 160 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=97.75 E-value=1.3e-07 Score=58.27 Aligned_cols=264 Identities=14% Similarity=0.125 Sum_probs=143.0 Q ss_pred HHHHHHHHHHHhhccceeEeecchhhhhhhC--------CCccCCHHHHHHHHHHHHHhcCCceEEEEecc-----ceEE Q lcl|Aclame:pro 48 NVYSVINRIASDVSSAHFKTENTATLNRLES--------PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-----LEHI 114 (383) Q Consensus 48 ~v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~--------PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-----~~~~ 114 (383) --.-.+++.|.+++-..+.|.+...++|+-+ -|-..+-..-++.+..+ .+.|.... .++-. .... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 78 (279) T protein:vir:40 1 MSLFNLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFYW-ALQGKEVY-RVWYGGFKYYAQRV 78 (279) T ss_pred CcccccchhhcccceeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee-hhhhhhHHHHHhhc Confidence 0011234456666666677777665554432 34444444444444433 34443211 12111 1122 Q ss_pred eecCcceeeeecCCceEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 115 PNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) ..+|....++.+ ....+++|..+|.-+- + +++|.-+- ....-++.+ ......-+.+. T Consensus 79 ~~d~fn~~vr~~------------~~~~vtVP~~Dv~Iie---N----Plv~v~~e-e~~kM~~la---~nai~~KLD~~ 135 (279) T protein:vir:40 79 NADQFNIVVREP------------NRREVTIRTNDYEMLL---N----PFYGANPQ-RFGVMFGMA---SNGIGRRLDSQ 135 (279) T ss_pred CcchhhhheecC------------CcceeEeecchhhhhh---c----chheeccc-hhhHHHHHH---Hhhhhhhhccc Confidence 233333333222 2333556666665442 1 23443332 222222222 23333334788 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcc-cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCH Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTGDN-SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPS 273 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n-~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~ 273 (383) +..+++++.+.....++.+++.+..++++....+ -+++.+++.|-+++.++.+..-. +.+..++.+...++.+|||- T Consensus 136 ~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYSts--lk~die~lkS~l~Sq~Gine 213 (279) T protein:vir:40 136 AQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGS--LQNDANLAIEIALSEYGMPR 213 (279) T ss_pred ceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeeccccccc--cHHHHHHHHHHHHhhcCCch Confidence 8889999988766678888899999998887755 47899999999999998765543 34667777899999999999 Q ss_pred HHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCH-HH Q lcl|Aclame:pro 274 DILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGA-EQ 352 (383) Q Consensus 274 ~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~-nE 352 (383) .+|-+.. +.+++..++..++.|++++.+..+-. . -+|.+. .+.+-.+.|.+.- .- T Consensus 214 kIL~GsA-------tE~q~iAyy~rtVePILkQyek~liY---~--~E~fv~------------y~ttta~gg~~~s~~~ 269 (279) T protein:vir:40 214 ELLYGQS-------NEVTIIAFAIQKVLPLLKQHDKNIIF---N--QENFVA------------YISTTAKGGAIESKSS 269 (279) T ss_pred hhccccC-------chhhhhhHHHhhHHHHHHHhcccccc---h--hhhhhh------------hheecccCcccccccc Confidence 9985432 23678889999999999996664321 0 011000 0000011121111 11 Q ss_pred HHHHhCCCCccCC Q lcl|Aclame:pro 353 AQFILTRSGFLPD 365 (383) Q Consensus 353 ~R~~~g~~p~~~~ 365 (383) .| +-+|+..+ T Consensus 270 ~~---~~~~~~~~ 279 (279) T protein:vir:40 270 KR---DSEPVGND 279 (279) T ss_pred cc---cCCCCCCC Confidence 11 22333322 No 161 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=97.71 E-value=2.6e-05 Score=45.69 Aligned_cols=373 Identities=9% Similarity=-0.025 Sum_probs=136.0 Q ss_pred CcccchhccccccccccccccchhhhhhhccCccccc--cc-HHHH----hhhHHHHHHHHHHHHhhccceeEeecch-h Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSY--VS-ALSA----LQNTNVYSVINRIASDVSSAHFKTENTA-T 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~----~~~~~v~~~i~~ia~~ia~~~~~v~~~~-~ 72 (383) +-+++++.......... ......+..+...... .+ +... .-.....-+|+.+++.+----+.+-+.. . T Consensus 23 ~~~i~~L~~~~~~~~~r----~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd~~a~rl~~~Gf~~~d~~~~ 98 (504) T protein:vir:99 23 VDKVNGLYQQLVDRTPR----NLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVDTLARRCNLESFVWPDGDYG 98 (504) T ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHHHHHhhhccceeeCCCCChh Confidence 33333322111000000 0000000000000000 00 1110 1122234456666654322233332221 1 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----eEEeecCcceeeeecC--Cce----EEEEEEecCce Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----EHIPNSDVQINYLPGN--MGI----VYTVLESNDRP 141 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~ 141 (383) ..-+.+.+..-+.......+..+.+++|.||+.+..+.- .+-+.+|..+..+.+. +.. .++....++.. T Consensus 99 ~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d~~g~~ 178 (504) T protein:vir:99 99 SIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDSLLSITSRDAEGHP 178 (504) T ss_pred hHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeEEEEEEEecCCCeE Confidence 111222222222344567888888999999998764321 1123344444332221 110 01111111110 Q ss_pred E--EEEchhh------------------------eEEecccCccccCccccCcHHH-HHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 142 K--MVLRQDQ------------------------MLHFRLMPDPQYRYLIGRSPLE-SLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 142 ~--~~~~~~~------------------------vih~r~~~~~~~~~~~G~spi~-~~~~~i~~~~~~~~~~~~~~~ng 194 (383) . ..+.++. |++|.+. ......+|.|.+. .+...++..+...-......+-. T Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~--~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~ 256 (504) T protein:vir:99 179 TGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYK--PREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVY 256 (504) T ss_pred EEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEeccc--ccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHh Confidence 0 0112222 4444422 1222346777543 33333333332222222112222 Q ss_pred CCcceEEE-EcCc-CC--CHHHHHHHHHHHHHHhcCcccCCceec-cCCceeEecccChhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 195 INPAGKLT-ISNY-LS--DGKDLESAREEFEKANTGDNSGRLMVL-PDGFDYTQLEMKTDVFKALADNSAYSADQISKAF 269 (383) Q Consensus 195 ~~p~~~~~-~~~~-~~--~~~~~~~~~~~~~~~~~g~n~g~~~vl-~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~f 269 (383) +.|.-++. .... .. +......++....+.+.-.......+. ..+.++..+ ...+++.+.+..+..+..|+..- T Consensus 257 a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~--~~~~l~~~~~~l~~~i~~~a~~t 334 (504) T protein:vir:99 257 SFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVKQF--PASSPQPHIEMLEQIAMMFSGET 334 (504) T ss_pred cchhhhhccCCccccccccccccchhhhhhhhhhcCCCccccccccCccceeeec--CCCChHHHHHHHHHHHHHHHhhh Confidence 22222221 1110 00 111122333333333221111111111 123444444 34455666788999999999999 Q ss_pred cCCHHHhccccccccchhHHHHHHH---HHHHHHHHHHHHHHHHHHhh----c-----CC------ceeeeechhhhccC Q lcl|Aclame:pro 270 GVPSDILGGGTSTESQHSNIDQIKA---TYLANLNSYVNPIVDELRLK----M-----NA------PDLELDIKDMLDVD 331 (383) Q Consensus 270 gVp~~~lg~~~~~~~~~~~~e~~~~---~~~~tl~p~~~~i~~~l~~~----l-----~~------~~~~fd~~~ll~~d 331 (383) ++|++.+|.....+ ++..+.++. .+.....---+.+.+.+.+. + .. ..+++.+.+....+ T Consensus 335 ~~P~~~lG~~~~~n--~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s 412 (504) T protein:vir:99 335 SIPVESLGFSNRAN--PTSADAYIASREDLIAEAEGATDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLS 412 (504) T ss_pred CCCHHHhccccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceeEecCCCccC Confidence 99999998643221 122222221 11111111112222222211 0 00 13444555666678 Q ss_pred HHHHHHHHHHHHhCCCcC--H-HHHHHHhCCCCccCC----c--------cccccCCCCCCCCC--CCC Q lcl|Aclame:pro 332 DSILINQVSNLAKSGVLG--A-EQAQFILTRSGFLPD----N--------LPEFKPLTNETKGG--DDK 383 (383) Q Consensus 332 ~~~~~~~~~~~~~~G~~t--~-nE~R~~~g~~p~~~~----d--------~~~~~~~~~~~~gG--d~~ 383 (383) ..++++++.++++.|... + +-+.+++|+.+-.=. + .........+.++| +.+ T Consensus 413 ~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~ 481 (504) T protein:vir:99 413 KAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQ 481 (504) T ss_pred HHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCC Confidence 899999999999988532 1 223344443321000 0 00000000000111 100 No 162 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=97.67 E-value=3.1e-05 Score=45.32 Aligned_cols=361 Identities=11% Similarity=0.009 Sum_probs=146.8 Q ss_pred Ccccc-hhccc--ccccc----ccccccchhhhhhhccCcccccccHHHHh----hhHHHHHHHHHHHHhhccceeEeec Q lcl|Aclame:pro 1 MGLLT-PKNFS--KRNAK----NMVYPSNPAFFTTTVGGMQLSYVSALSAL----QNTNVYSVINRIASDVSSAHFKTEN 69 (383) Q Consensus 1 Mg~~~-~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~i~~ia~~ia~~~~~v~~ 69 (383) ..++. ++... ++.++ ...+.+.... ...... ..-.....+ .......+|+.+++.+--..+.+.+ T Consensus 15 ~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i-~~~~~~---~~~~~~~~~~~~~~~n~~~~iVd~~~~~l~~~gf~~~d 90 (479) T protein:vir:99 15 AKYLETKVFPKMNTECERLDDFEAWTKNGQEV-PDLATR---HKNKEREVLQQLSRKPWMGLMVNSFAQQLIVDGYRKTG 90 (479) T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcc-cccccc---cCChhHHHHHHHhhcCcHHHHHHHHHhhcccccccCCC Confidence 11110 00000 00000 0000000000 000000 000011111 1234455667666644322333322 Q ss_pred chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec-------c-ceEEeecCcceeeeecCCc----eEEEEEEe Q lcl|Aclame:pro 70 TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ-------N-LEHIPNSDVQINYLPGNMG----IVYTVLES 137 (383) Q Consensus 70 ~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 137 (383) ......+.+....-........+..+.+.+|.||+++... + ..+...+|..+..+.++.. ..|.+... T Consensus 91 ~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iydd~~~~~~~~~~~~~~ 170 (479) T protein:vir:99 91 TNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCIDPRDAFAIWEDPYWDEWPKYLLERQ 170 (479) T ss_pred chhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEechhheEEEecCCcccceeeEEEeec Confidence 2222111111111123345567788888999999976431 0 1122334444433321110 01111111 Q ss_pred ------------------cCceEE-------EEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 138 ------------------NDRPKM-------VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAME 192 (383) Q Consensus 138 ------------------~~~~~~-------~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ 192 (383) .++... .+..=.|+||++.... ...|.|-++.+...++..+....-.....+ T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~---~~~g~sd~e~v~~liDa~~~~~s~~~~~~~ 247 (479) T protein:vir:99 171 PNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL---RGVCYGDVEPLVTVAKAIDKTGLDILLVQH 247 (479) T ss_pred CceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc---CcCCcchhHHHHHHHHHHHHHHHHHHHHHH Confidence 111000 0111125666542211 125888888777777766666555555555 Q ss_pred ccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCcee-ccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 193 NQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMV-LPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGV 271 (383) Q Consensus 193 ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~v-l~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgV 271 (383) -.+.|-.++.-.. ..+.+..+ ...+.- ..++++. -+++.++..++ ..+++.+.+..+..+..|+.+-++ T Consensus 248 ~~a~p~~~i~G~~-~~~~~~~~--~~~~~~-----~~~~i~~~~~~~~~~~q~~--~~~~~~~~~~l~~~i~~i~~~t~~ 317 (479) T protein:vir:99 248 HQSFQIRWATGLM-LPEGANAD--QEKMRF-----AQESMLISQNEKASFGAIP--AAPLDGLLNAYKESLLEFLALAQL 317 (479) T ss_pred HhhchhhhhcCCC-cccccccc--hhcccc-----ccccceeecCCCceEEEec--ccchHHHHHHHHHHHHHHhccCCC Confidence 5555655544221 11111100 011111 1123433 34556665544 344444567777788899999999 Q ss_pred CHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCC--ceeeeechhhhccCHHHH Q lcl|Aclame:pro 272 PSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMNA--PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 272 p~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~~--~~~~fd~~~ll~~d~~~~ 335 (383) |++.+|... +.+ .+.++. .|...|...++.+....+..... ..+++.+.+....+..+. T Consensus 318 p~~~~g~~~--n~S---g~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ 392 (479) T protein:vir:99 318 PPHIAGQIV--NVA---ADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQF 392 (479) T ss_pred CHHHccccc--chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHH Confidence 999998532 222 122221 11112222222111111100000 134555555555688899 Q ss_pred HHHHHHHHhCCCcCHHHHHHHh-CCCCccCCc-----------------c---ccccCCCCCCCCCCCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFIL-TRSGFLPDN-----------------L---PEFKPLTNETKGGDDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~-g~~p~~~~d-----------------~---~~~~~~~~~~~gGd~~ 383 (383) ++++.+++++|+++...+.+++ |..+-.-.. + +.........+|.++. T Consensus 393 ad~~~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (479) T protein:vir:99 393 ADAWAKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNM 461 (479) T ss_pred HHHHHHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCC Confidence 9999999999998888887766 443210000 0 0000000111111111 No 163 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=97.64 E-value=4.4e-06 Score=49.93 Aligned_cols=363 Identities=13% Similarity=0.102 Sum_probs=161.3 Q ss_pred Cccc-chhccccccccccccccchhhhhhhccCccccc-ccHHHHhhhHHHHHHHHHHHHhh---ccce---eEeecch- Q lcl|Aclame:pro 1 MGLL-TPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSY-VSALSALQNTNVYSVINRIASDV---SSAH---FKTENTA- 71 (383) Q Consensus 1 Mg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~i~~ia~~i---a~~~---~~v~~~~- 71 (383) =.=| +..+...++ .+...-|..........+ +.. .-..+.+| .++++.| ..+| +.+.+.+ T Consensus 35 ~~~~kt~~~~~ar~------~WQ~eAW~~~d~v~Elry~vgW----~~~s~sr~-rL~as~idpDtg~PtG~V~~E~d~~ 103 (639) T protein:vir:10 35 QKQMKTSLMGTARN------EWQSEAWDFSESIGELSYYVSW----RANSCSRT-TLIPSAIDPDTGLPTGEVDIEEDPD 103 (639) T ss_pred ccchhhhccccchh------hhhhhhhhhhhhhhhHHHHhhh----hhhhhcee-eeEeeeeccccCCCCCccccccccC Confidence 0000 001111110 000000000000000000 000 00001111 1111111 0111 1111111 Q ss_pred hhhhh----hCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----------eEEeecCcceeeeecCCceEEEEEE Q lcl|Aclame:pro 72 TLNRL----ESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----------EHIPNSDVQINYLPGNMGIVYTVLE 136 (383) Q Consensus 72 ~~~l~----~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383) ...+. .-----+...++++.+..++.+-|++|+.....+. .-|.+.... .+...++....... T Consensus 104 ~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~W~vvs~~--Ei~~~~~~~~~i~l 181 (639) T protein:vir:10 104 AQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRARWYAVTRE--EIKSKAGETAEISL 181 (639) T ss_pred cchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccceeeeeHH--HhcccCCCeeEeec Confidence 00010 01122356788899999999999999987544221 111111111 11111221221222 Q ss_pred ecCceEEEEchh-heEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH----- Q lcl|Aclame:pro 137 SNDRPKMVLRQD-QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG----- 210 (383) Q Consensus 137 ~~~~~~~~~~~~-~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~----- 210 (383) .+|. ..+|..+ +++ ||-.++.......--||+.++...+.-.....+...+..+.-..-.|++-++..++-+ T Consensus 182 PdG~-~he~~~~~d~l-~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~gnGvlfvP~els~p~~~~p 259 (639) T protein:vir:10 182 PDGK-THEFNRDLDSL-VRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRVMNNGVLFVPAEMSLPAAQAP 259 (639) T ss_pred CCCC-CccccCCCceE-EEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCceeeeccccCCCCcccc Confidence 2332 2334333 333 5644443333456789999888888766666666555555444444454333322100 Q ss_pred -------------------HHHHHHHHHHH----HHhcCcccC---CceeccC----CceeEecccChhHHHHHHHHHHH Q lcl|Aclame:pro 211 -------------------KDLESAREEFE----KANTGDNSG---RLMVLPD----GFDYTQLEMKTDVFKALADNSAY 260 (383) Q Consensus 211 -------------------~~~~~~~~~~~----~~~~g~n~g---~~~vl~~----g~~~~~l~~~~~~~~~l~e~~~~ 260 (383) -+.+.+...+- ..+...++- -++++.. .-+++.|.+...-...-.++++. T Consensus 260 ~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~ikhl~f~~ei~e~aiktR~d 339 (639) T protein:vir:10 260 IPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEKVQHIKFGNEVTEVEIKTRID 339 (639) T ss_pred ccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcCeeeeeecCchhHHHHhhHHH Confidence 01122333222 222222211 2333321 23445555544333333589999 Q ss_pred HHHHHHHHhcCCHHH-hccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC------------ceeeeechh Q lcl|Aclame:pro 261 SADQISKAFGVPSDI-LGGGTSTESQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNA------------PDLELDIKD 326 (383) Q Consensus 261 ~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~------------~~~~fd~~~ 326 (383) .+.++|...-|||+. ||. .++|-+.+=. .. .-+.-.|.|.+..|+++|++.++. +-+-||.+. T Consensus 340 aI~RlA~glDi~pE~LLGl-~d~NHWsAWq--I~dedvrlHI~P~l~~icdAlT~~~Lrp~Le~eGvDp~kYvvW~DaS~ 416 (639) T protein:vir:10 340 AITRLAMGLDVSPERLLGM-SKGNHWSAWA--IGDEDVQLHIKPVMDLICQAIYNDILTPLLAREGIDPTKYILWYDASG 416 (639) T ss_pred HHHHHHhccCCchhheeec-ccccceEEEE--ecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCCHHHhEeeecCcc Confidence 999999999999986 565 4566555321 11 122335899999999999987752 246788888 Q ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc-------------------------cccc----c------ Q lcl|Aclame:pro 327 MLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN-------------------------LPEF----K------ 371 (383) Q Consensus 327 ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d-------------------------~~~~----~------ 371 (383) |.. |. ++.+-+..++++|.+|-.=.|+.+|+.--.+-+ .+.. + T Consensus 417 Lt~-dP-d~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~apl~~P~lq~~e~pt 494 (639) T protein:vir:10 417 LTS-DP-DLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELIAMYAPLLSSQLAGIEFPQ 494 (639) T ss_pred ccc-CC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchhhhhhhccCccceecccCC Confidence 743 22 233445567889999999999998854321111 0000 0 Q ss_pred ----CCCCCCCCCCCC Q lcl|Aclame:pro 372 ----PLTNETKGGDDK 383 (383) Q Consensus 372 ----~~~~~~~gGd~~ 383 (383) ....+.+.+|++ T Consensus 495 p~~a~~~a~~~~~~de 510 (639) T protein:vir:10 495 PANAIESTREDEEDDE 510 (639) T ss_pred CCCCCCCCCCCCCccc Confidence 000011122222 No 164 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=97.64 E-value=4.4e-06 Score=49.93 Aligned_cols=363 Identities=13% Similarity=0.102 Sum_probs=161.3 Q ss_pred Cccc-chhccccccccccccccchhhhhhhccCccccc-ccHHHHhhhHHHHHHHHHHHHhh---ccce---eEeecch- Q lcl|Aclame:pro 1 MGLL-TPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSY-VSALSALQNTNVYSVINRIASDV---SSAH---FKTENTA- 71 (383) Q Consensus 1 Mg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~i~~ia~~i---a~~~---~~v~~~~- 71 (383) =.=| +..+...++ .+...-|..........+ +.. .-..+.+| .++++.| ..+| +.+.+.+ T Consensus 35 ~~~~kt~~~~~ar~------~WQ~eAW~~~d~v~Elry~vgW----~~~s~sr~-rL~as~idpDtg~PtG~V~~E~d~~ 103 (639) T protein:vir:97 35 QKQMKTSLMGTARN------EWQSEAWDFSESIGELSYYVSW----RANSCSRT-TLIPSAIDPDTGLPTGEVDIEEDPD 103 (639) T ss_pred ccchhhhccccchh------hhhhhhhhhhhhhhhHHHHhhh----hhhhhcee-eeEeeeeccccCCCCCccccccccC Confidence 0000 001111110 000000000000000000 000 00001111 1111111 0111 1111111 Q ss_pred hhhhh----hCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----------eEEeecCcceeeeecCCceEEEEEE Q lcl|Aclame:pro 72 TLNRL----ESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----------EHIPNSDVQINYLPGNMGIVYTVLE 136 (383) Q Consensus 72 ~~~l~----~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (383) ...+. .-----+...++++.+..++.+-|++|+.....+. .-|.+.... .+...++....... T Consensus 104 ~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~W~vvs~~--Ei~~~~~~~~~i~l 181 (639) T protein:vir:97 104 AQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRARWYAVTRE--EIKSKAGETAEISL 181 (639) T ss_pred cchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccceeeeeHH--HhcccCCCeeEeec Confidence 00010 01122356788899999999999999987544221 111111111 11111221221222 Q ss_pred ecCceEEEEchh-heEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCH----- Q lcl|Aclame:pro 137 SNDRPKMVLRQD-QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG----- 210 (383) Q Consensus 137 ~~~~~~~~~~~~-~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~----- 210 (383) .+|. ..+|..+ +++ ||-.++.......--||+.++...+.-.....+...+..+.-..-.|++-++..++-+ T Consensus 182 PdG~-~he~~~~~d~l-~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~gnGvlfvP~els~p~~~~p 259 (639) T protein:vir:97 182 PDGK-THEFNRDLDSL-VRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRVMNNGVLFVPAEMSLPAAQAP 259 (639) T ss_pred CCCC-CccccCCCceE-EEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCceeeeccccCCCCcccc Confidence 2332 2334333 333 5644443333456789999888888766666666555555444444454333322100 Q ss_pred -------------------HHHHHHHHHHH----HHhcCcccC---CceeccC----CceeEecccChhHHHHHHHHHHH Q lcl|Aclame:pro 211 -------------------KDLESAREEFE----KANTGDNSG---RLMVLPD----GFDYTQLEMKTDVFKALADNSAY 260 (383) Q Consensus 211 -------------------~~~~~~~~~~~----~~~~g~n~g---~~~vl~~----g~~~~~l~~~~~~~~~l~e~~~~ 260 (383) -+.+.+...+- ..+...++- -++++.. .-+++.|.+...-...-.++++. T Consensus 260 ~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~ikhl~f~~ei~e~aiktR~d 339 (639) T protein:vir:97 260 IPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEKVQHIKFGNEVTEVEIKTRID 339 (639) T ss_pred ccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcCeeeeeecCchhHHHHhhHHH Confidence 01122333222 222222211 2333321 23445555544333333589999 Q ss_pred HHHHHHHHhcCCHHH-hccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCC------------ceeeeechh Q lcl|Aclame:pro 261 SADQISKAFGVPSDI-LGGGTSTESQHSNIDQIK-ATYLANLNSYVNPIVDELRLKMNA------------PDLELDIKD 326 (383) Q Consensus 261 ~~~~Ia~~fgVp~~~-lg~~~~~~~~~~~~e~~~-~~~~~tl~p~~~~i~~~l~~~l~~------------~~~~fd~~~ 326 (383) .+.++|...-|||+. ||. .++|-+.+=. .. .-+.-.|.|.+..|+++|++.++. +-+-||.+. T Consensus 340 aI~RlA~glDi~pE~LLGl-~d~NHWsAWq--I~dedvrlHI~P~l~~icdAlT~~~Lrp~Le~eGvDp~kYvvW~DaS~ 416 (639) T protein:vir:97 340 AITRLAMGLDVSPERLLGM-SKGNHWSAWA--IGDEDVQLHIKPVMDLICQAIYNDILTPLLAREGIDPTKYILWYDASG 416 (639) T ss_pred HHHHHHhccCCchhheeec-ccccceEEEE--ecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCCHHHhEeeecCcc Confidence 999999999999986 565 4566555321 11 122335899999999999987752 246788888 Q ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc-------------------------cccc----c------ Q lcl|Aclame:pro 327 MLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN-------------------------LPEF----K------ 371 (383) Q Consensus 327 ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d-------------------------~~~~----~------ 371 (383) |.. |. ++.+-+..++++|.+|-.=.|+.+|+.--.+-+ .+.. + T Consensus 417 Lt~-dP-d~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~apl~~P~lq~~e~pt 494 (639) T protein:vir:97 417 LTS-DP-DLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELIAMYAPLLSSQLAGIEFPQ 494 (639) T ss_pred ccc-CC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchhhhhhhccCccceecccCC Confidence 743 22 233445567889999999999998854321111 0000 0 Q ss_pred ----CCCCCCCCCCCC Q lcl|Aclame:pro 372 ----PLTNETKGGDDK 383 (383) Q Consensus 372 ----~~~~~~~gGd~~ 383 (383) ....+.+.+|++ T Consensus 495 p~~a~~~a~~~~~~de 510 (639) T protein:vir:97 495 PANAIESTREDEEDDE 510 (639) T ss_pred CCCCCCCCCCCCCccc Confidence 000011122222 No 165 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=97.60 E-value=4e-05 Score=44.70 Aligned_cols=369 Identities=10% Similarity=0.071 Sum_probs=166.1 Q ss_pred Ccccchhcc--cccc-----ccc--------cccccc------hhhhhhhccCcccccccH---------HHHhhhHHHH Q lcl|Aclame:pro 1 MGLLTPKNF--SKRN-----AKN--------MVYPSN------PAFFTTTVGGMQLSYVSA---------LSALQNTNVY 50 (383) Q Consensus 1 Mg~~~~~~~--~~~~-----~~~--------~~~~~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~ 50 (383) ||+|+++.. ++-. .+. .+..+. ..+. .+..+... .+.. +......... T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~-~~Y~g~~~-~l~~~~~~~~~~~~~~~slnl~~ 78 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDK-RYYMDDFK-QVTHKNSYGDTQKHELQSVNVTK 78 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHH-HHhcCCCc-cccccccCCCccccceeecchHH Confidence 999998632 2100 000 011110 0011 11111111 1110 1112223445 Q ss_pred HHHHHHHHhhccce--eEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc--ceEEeecCcceeee-- Q lcl|Aclame:pro 51 SVINRIASDVSSAH--FKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN--LEHIPNSDVQINYL-- 124 (383) Q Consensus 51 ~~i~~ia~~ia~~~--~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--~~~~~~~~~~~~~~-- 124 (383) .+++.+|+-+..=| +.+.+......+.+-...-....-....+...+..|.+++.+..+. ..+-..++..+.+. T Consensus 79 ~i~~~~A~ll~~e~~~i~~~d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~~~~~i~~v~ad~~~P~~~ 158 (505) T protein:vir:79 79 LASAKLASLIFNEQCQVTVSDETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDSGKIKLAWATADQVYPLQA 158 (505) T ss_pred HHHHHHHhhhcCCCceeecCChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeCCceEEEEEcCCeeEEEEE Confidence 55566666554433 3343433333333222222334445566666677788877654321 11111111111111 Q ss_pred ----------------e-cCCceEEEEEEe----cCceE---------------EEEc--------------------hh Q lcl|Aclame:pro 125 ----------------P-GNMGIVYTVLES----NDRPK---------------MVLR--------------------QD 148 (383) Q Consensus 125 ----------------~-~~~~~~~~~~~~----~~~~~---------------~~~~--------------------~~ 148 (383) . +....+|..... ++... ..++ .- T Consensus 159 d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p 238 (505) T protein:vir:79 159 DTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHP 238 (505) T ss_pred cCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcc Confidence 0 111111110000 00000 0000 00 Q ss_pred heEEecccCccc--cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----EEcCcCCCHHHHHHHHHHHH Q lcl|Aclame:pro 149 QMLHFRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKL-----TISNYLSDGKDLESAREEFE 221 (383) Q Consensus 149 ~vih~r~~~~~~--~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~-----~~~~~~~~~~~~~~~~~~~~ 221 (383) -+.|||...++. .....|.|.+.-+...++..+.......+-++.|-+ +.++ ........ +....-...+. T Consensus 239 ~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~-~i~v~~~~l~~~~~~~~-~~~~~~~~~fd 316 (505) T protein:vir:79 239 LFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQR-RLIVPAEWLKTGSSYGG-QASETHPPMFD 316 (505) T ss_pred eEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhccc-ceeechHHhcccCCCCc-ccccccccCCC Confidence 133555322221 122369999998988888777666666666676543 2222 11111000 00000000010 Q ss_pred ---HHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHH Q lcl|Aclame:pro 222 ---KANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLA 298 (383) Q Consensus 222 ---~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~ 298 (383) ..+.+ +..-+++..++.++..-...+. .+..+...+.|+...|+++.-+|....+..+........+.... T Consensus 317 ~~~~~y~~-----~~~~~~~~~i~~~~~~ir~e~~-~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~~~~l~~ 390 (505) T protein:vir:79 317 PDETVYQA-----MYGDASEVGFHDATSPIRVADY-QATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTNNSQTYQ 390 (505) T ss_pred ccceeeee-----ccCCCCCCceEEecccCCHHHH-HHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHHHhHHHH Confidence 00111 0011223456667766555554 47888888999999999999998755443322222111222222 Q ss_pred HHHHHHHHHHHHHHhhc------------C------------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Q lcl|Aclame:pro 299 NLNSYVNPIVDELRLKM------------N------------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQ 354 (383) Q Consensus 299 tl~p~~~~i~~~l~~~l------------~------------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R 354 (383) ++.-..+.++++|...+ . ...+.+++++-+..|.++.++...+++.+|+|++.+++ T Consensus 391 t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l 470 (505) T protein:vir:79 391 TRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPKKQFL 470 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHH Confidence 33333333333333211 0 12577888888889999999999999999999999888 Q ss_pred HHhCCCCccCCc----cccccC------CCCCCCCCC Q lcl|Aclame:pro 355 FILTRSGFLPDN----LPEFKP------LTNETKGGD 381 (383) Q Consensus 355 ~~~g~~p~~~~d----~~~~~~------~~~~~~gGd 381 (383) ... +++...+ +++... +....-||| T Consensus 471 ~~~--~~~~eeea~~el~ri~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 471 MRN--YGLDEEEADEWLAQIDAENSTAEPEFNQFGGD 505 (505) T ss_pred Hhc--CCCChHHHHHHHHHHHHhccccCCCchhccCC Confidence 653 3343322 222211 112234788 No 166 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=97.52 E-value=5.1e-05 Score=44.13 Aligned_cols=361 Identities=10% Similarity=0.031 Sum_probs=143.2 Q ss_pred Cc---------ccchhccc--cccccccccccchhhhhhhccCccc---ccccHHH----HhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MG---------LLTPKNFS--KRNAKNMVYPSNPAFFTTTVGGMQL---SYVSALS----ALQNTNVYSVINRIASDVSS 62 (383) Q Consensus 1 Mg---------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~v~~~i~~ia~~ia~ 62 (383) +| ++..+... .+.++.. ....+..+.... ....+.. -........+|+.+++.+-- T Consensus 6 ~~~~e~~~~~~~~~~l~~~~~~~~~r~~------~l~~YY~G~~~i~~~~~~~~~~~~~~~~v~n~~~~iVd~~~~~l~~ 79 (486) T protein:vir:42 6 PGMEEIEDPAVVREEMISAFEDASKDLA------SNTSYYDAERRPEAIGVTVPREMQQLLAHVGYPRLYVDSVAERQAV 79 (486) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHH------HHHHHhcccCcchhcccccchhHhhhhhccchHHHHHHHHHhhhcc Confidence 11 11111110 0000000 000000000000 0000000 01123445566666665533 Q ss_pred ceeEeecch-----hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----------eEEeecCcceeeeec Q lcl|Aclame:pro 63 AHFKTENTA-----TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----------EHIPNSDVQINYLPG 126 (383) Q Consensus 63 ~~~~v~~~~-----~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----------~~~~~~~~~~~~~~~ 126 (383) ..+.+-+.. ...++ +-|. .......+..+.+.+|.||+.+..+.. ...+.+|..+..+.+ T Consensus 80 ~g~~~~~~~~~~~~~~~i~-~~N~---~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d 155 (486) T protein:vir:42 80 EGFRLGDADEADEELWQWW-QANN---LDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEID 155 (486) T ss_pred cceecCCCchhHHHHHHHH-HhcC---hhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEe Confidence 444443321 11122 2232 344566788888999999987754320 112233333322221 Q ss_pred C----------------CceEE-----------EEEEecCceE------EEEchhheEEecccCccccCccccCcHHHH- Q lcl|Aclame:pro 127 N----------------MGIVY-----------TVLESNDRPK------MVLRQDQMLHFRLMPDPQYRYLIGRSPLES- 172 (383) Q Consensus 127 ~----------------~~~~~-----------~~~~~~~~~~------~~~~~~~vih~r~~~~~~~~~~~G~spi~~- 172 (383) . .+... ++...++... ..+..=.|++|++ .....+..|.|-++- T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n--~~~~~~~~G~s~i~~~ 233 (486) T protein:vir:42 156 PRINRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPN--RTRLSDLYGTSEITPE 233 (486) T ss_pred CCCCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEecc--ccccCCCCCcccchhh Confidence 1 11111 0001111100 0001112444542 223334568776652 Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCcceEEEEcC--cCCCHHHHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChh Q lcl|Aclame:pro 173 LQNALNLDDKASKSNMSAMENQINPAGKLTISN--YLSDGKDLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTD 249 (383) Q Consensus 173 ~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~ 249 (383) +...++..+.+........+-.+.|..++.-.+ .....+ ..-...|+. ..+++++++ ++.++..++. . T Consensus 234 v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~q~~~--~ 304 (486) T protein:vir:42 234 LRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDS--ETGQTLFDA-----YLARILAFEDAEGKIQQFSA--A 304 (486) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCcccccccc--ccccchhhh-----hhchhcccCCCCceEEeecc--c Confidence 333343333333233333333333443433111 000000 111112221 123455554 4566655543 3 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCC- Q lcl|Aclame:pro 250 VFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNA- 317 (383) Q Consensus 250 ~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~- 317 (383) +++.+.+..+..+..++..=++|++.+|+...+..+.... +.....|...|...++.+....+..-.. T Consensus 305 ~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~ 384 (486) T protein:vir:42 305 ELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDVPP 384 (486) T ss_pred CHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc Confidence 4455568888888999999999999987543221111110 1111122222322222221111110001 Q ss_pred --ceeeeechhhhccCHHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCccCCcc-------------------------- Q lcl|Aclame:pro 318 --PDLELDIKDMLDVDDSILINQVSNLAKS--GVLGAEQAQFILTRSGFLPDNL-------------------------- 367 (383) Q Consensus 318 --~~~~fd~~~ll~~d~~~~~~~~~~~~~~--G~~t~nE~R~~~g~~p~~~~d~-------------------------- 367 (383) ..+++.+.+-...+..+.++++.+++++ |+++..-+++++|+.+-+-..+ T Consensus 385 d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~ 464 (486) T protein:vir:42 385 DMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPTVP 464 (486) T ss_pred cceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC Confidence 1355566666677899999999999986 6888887787776543211100 Q ss_pred -------ccccCCCCCCCCCCC Q lcl|Aclame:pro 368 -------PEFKPLTNETKGGDD 382 (383) Q Consensus 368 -------~~~~~~~~~~~gGd~ 382 (383) +....+.....|||= T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 465 GSPSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred CCCCCCCCCCCCcccCCCCCCC Confidence 000000000112222 No 167 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=97.52 E-value=5.2e-05 Score=44.06 Aligned_cols=335 Identities=9% Similarity=0.015 Sum_probs=135.1 Q ss_pred Ccccchhcccc--ccccccccccchhhhhhhccCccccc----ccHH--HHh--hhHHHHHHHHHHHHhhccceeEeecc Q lcl|Aclame:pro 1 MGLLTPKNFSK--RNAKNMVYPSNPAFFTTTVGGMQLSY----VSAL--SAL--QNTNVYSVINRIASDVSSAHFKTENT 70 (383) Q Consensus 1 Mg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~--~~~~v~~~i~~ia~~ia~~~~~v~~~ 70 (383) ..+++.+...- +.++... ...+ ..+...... +..+ ..+ -.....-+|+.+++.+.=--+...+. T Consensus 3 ~~~i~~L~~~~~~~~~r~~~---~~~y---Y~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~~~d~ 76 (409) T protein:vir:16 3 EKGIGYLRFKLSVHKRRAEM---RYEQ---YAMKHVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFENDDF 76 (409) T ss_pred HHHHHHHHHHHHHHhHHHHH---HHHH---HhccCchhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhcccccccCcch Confidence 22233322211 0111000 0000 111111100 0000 001 11234445666655332222222221 Q ss_pred hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc---eEEeecCcceeeeecC----------------Cc-e Q lcl|Aclame:pro 71 ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL---EHIPNSDVQINYLPGN----------------MG-I 130 (383) Q Consensus 71 ~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~---~~~~~~~~~~~~~~~~----------------~~-~ 130 (383) ..+.+. +-| +.......+..+.+++|.+|+.+..+.- ..-+.+|..+..+.+. .+ . T Consensus 77 ~l~~i~-~~N---~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~~~~~~a~~~~~~d~~~~~ 152 (409) T protein:vir:16 77 TVNEIF-EEN---NPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPITGLLTEGYAVLERDENNNV 152 (409) T ss_pred HHHHHH-Hhc---ChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeecccccceeeeEEEEecCCCce Confidence 122222 112 3334555777788899999998765321 1222333332222211 11 0 Q ss_pred EEEEEEecCceEE-------------EEchhheEEecccCccccCccccCcHH----HHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 131 VYTVLESNDRPKM-------------VLRQDQMLHFRLMPDPQYRYLIGRSPL----ESLQNALNLDDKASKSNMSAMEN 193 (383) Q Consensus 131 ~~~~~~~~~~~~~-------------~~~~~~vih~r~~~~~~~~~~~G~spi----~~~~~~i~~~~~~~~~~~~~~~n 193 (383) .....+..+.... .+..=.|++|.+ .+......|.|-| ..+...+.....-......++.+ T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n--~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~ 230 (409) T protein:vir:16 153 VLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIH--RPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF 230 (409) T ss_pred EEEEEEecCcEEEEEecCccccceecCCCCcceEEecc--cccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcC Confidence 0000000010000 000012455542 2222345687754 33444444333333344444433 Q ss_pred cCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-----CCceeEecccChhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 194 QINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-----DGFDYTQLEMKTDVFKALADNSAYSADQISKA 268 (383) Q Consensus 194 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~ 268 (383) - .+.++-.+. +.+..+.++... ++++.++ .+.++..+ ...+++.+.+..+..+..+|.. T Consensus 231 p--qr~i~G~d~---d~~~~~~~~~~~---------~~i~~~~~d~~g~~~~v~q~--~~~~l~~~~~~l~~~~~~~a~~ 294 (409) T protein:vir:16 231 P--QKYVTGLSD---DAEPMETWKATV---------SSMLQFTKDEDGDKPTLGQF--TQPSMSPFTEQLRTAAAGFAGE 294 (409) T ss_pred h--hheeEecCC---CCCccchhhhhh---------hHhhccCCCCCCCCceEEec--CCCChhHHHHHHHHHHHHHhhh Confidence 2 233333322 112222232222 2344442 23455444 3445566679999999999999 Q ss_pred hcCCHHHhccccccccchhHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhcC-C---ceeeeechhhhcc--- Q lcl|Aclame:pro 269 FGVPSDILGGGTSTESQHSNIDQIKA-----------TYLANLNSYVNPIVDELRLKMN-A---PDLELDIKDMLDV--- 330 (383) Q Consensus 269 fgVp~~~lg~~~~~~~~~~~~e~~~~-----------~~~~tl~p~~~~i~~~l~~~l~-~---~~~~fd~~~ll~~--- 330 (383) -++|++.+|.....-.+......... .|-..+.-.++......+..=. . ..+++.+.+.... T Consensus 295 s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~~~ 374 (409) T protein:vir:16 295 TGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEPLFEADAS 374 (409) T ss_pred cCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecCCCCcchh Confidence 99999999864321111111111111 1111121111111111110000 0 1234444444323 Q ss_pred CHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCcc Q lcl|Aclame:pro 331 DDSILINQVSNLAKSG--VLGAEQAQFILTRSGFL 363 (383) Q Consensus 331 d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~ 363 (383) +..+.++++.|+++.| +..-+-+++++|+..-. T Consensus 375 s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 375 MLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred hHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 4677889999999996 44567789998776433 No 168 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=97.49 E-value=5.7e-05 Score=43.85 Aligned_cols=365 Identities=10% Similarity=0.027 Sum_probs=152.4 Q ss_pred Ccccch------------------hcccccccc----ccccccchhhh-------hhhccCcccccccHHHHhhhHHHHH Q lcl|Aclame:pro 1 MGLLTP------------------KNFSKRNAK----NMVYPSNPAFF-------TTTVGGMQLSYVSALSALQNTNVYS 51 (383) Q Consensus 1 Mg~~~~------------------~~~~~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~ 51 (383) |.+... +-...+..+ ...+.+...+. .......... ..+..-+..+.... T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~-~~~~~ri~~n~~~~ 91 (503) T protein:vir:59 13 EELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDD-TKTNNRTSHAWHKL 91 (503) T ss_pred HhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhccccccccccc-ccccceeecchHHH Confidence 221111 100000000 00000000000 0000000000 00000112345667 Q ss_pred HHHHHHHhhccceeEeecc--hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeec Q lcl|Aclame:pro 52 VINRIASDVSSAHFKTENT--ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPG 126 (383) Q Consensus 52 ~i~~ia~~ia~~~~~v~~~--~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~ 126 (383) +|+..++-+-.-|+.+... .....+..-..+ ........+......+|.+|+++..+. ..+...+|..+....+ T Consensus 92 ivd~~~~yl~g~~~~~~~~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i~d 170 (503) T protein:vir:59 92 FVDQKTQYLVGEPVTFTSDNKTLLEYVNELADD-DFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIFPAEEMIVVYK 170 (503) T ss_pred HHHHHHhhhhcCCeeeccCcHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEEEccceeEEEEe Confidence 7788888777767654322 222222221111 445566678888889999999875532 2334445544444332 Q ss_pred CC--c-e----EEEEEEecCc----eEEEEchhheEEeccc----------------------------C-cc---ccCc Q lcl|Aclame:pro 127 NM--G-I----VYTVLESNDR----PKMVLRQDQMLHFRLM----------------------------P-DP---QYRY 163 (383) Q Consensus 127 ~~--~-~----~~~~~~~~~~----~~~~~~~~~vih~r~~----------------------------~-~~---~~~~ 163 (383) +. + . .++......+ ....+.++.+.+++.- + .| -... T Consensus 171 ~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn 250 (503) T protein:vir:59 171 DNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNN 250 (503) T ss_pred CCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCC Confidence 21 1 0 1111111110 0012222222221100 0 00 0001 Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEe Q lcl|Aclame:pro 164 LIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQ 243 (383) Q Consensus 164 ~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~ 243 (383) ..|.|-++.+...++..+.+.....+.++..+.|-.+++--+...+++. ...+. ..+++.++++.+++. T Consensus 251 ~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~ 319 (503) T protein:vir:59 251 EEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKEF----TANLR-------YHSVIKVSGDGGVDT 319 (503) T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCccccchh----hhhhh-------cccceeccCCCccee Confidence 2477777777777776665555555556777767666543222111111 11111 123555555444444 Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHhcCC---HHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 244 LEMKTDVFKALADNSAYSADQISKAFGVP---SDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVD 309 (383) Q Consensus 244 l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp---~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~ 309 (383) +...... +.+....+...+.|+..-++| +...+ ++.++... +.....|...|...++.+.. T Consensus 320 l~~~~~~-~~~~~~~~~l~~~i~~~s~~p~~~~~~~~----~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~ 394 (503) T protein:vir:59 320 LRAEIPV-DSAAKELERIQDELYKSAQAVDNSPETIG----GGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAE 394 (503) T ss_pred EeccCCH-HHHHHHHHHHHHHHHHHhcccCCCccccc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4433222 223445555556665555554 33222 12222111 11112222333333333333 Q ss_pred HHHhhcCC-----ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccc-----------cCC Q lcl|Aclame:pro 310 ELRLKMNA-----PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF-----------KPL 373 (383) Q Consensus 310 ~l~~~l~~-----~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~-----------~~~ 373 (383) .++..-.. ..+.+.+.+-+..|..+.++++.+++.+|+++...+.++++.-.-+..++-+. ... T Consensus 395 ~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~ 474 (503) T protein:vir:59 395 YLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEMNQYAEMQGNL 474 (503) T ss_pred HHHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhccc Confidence 33322111 23677777888889999999999999999999999888875432111111000 000 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 374 TNETKGGDDK 383 (383) Q Consensus 374 ~~~~~gGd~~ 383 (383) ..+.+|.+++ T Consensus 475 ~~~~~~~~~~ 484 (503) T protein:vir:59 475 LDDEGGDDDL 484 (503) T ss_pred cCccCCCCCC Confidence 0111111111 No 169 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=97.42 E-value=2.1e-05 Score=46.22 Aligned_cols=304 Identities=16% Similarity=0.096 Sum_probs=145.3 Q ss_pred Ccccchhcccccccc--------ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK--------NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTAT 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~ 72 (383) ||+|+.. ++.... .++...+.+.+ .+...-.+..+ +..+ ||..++.- +...... T Consensus 1 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~----~~~~~~~~--~~~~~~~ 62 (320) T protein:vir:97 1 MGIFNFK--KRETLTPELKESIIRQVTIEDESPF----TGTTDFNVRNE------VAES----IATYLGAY--KTSAKRL 62 (320) T ss_pred CCccccc--cccccChhHHhhhhheeeeccCCCc----ccccccchhhH------HHHH----HHHHhhhh--cccccee Confidence 9999842 221111 11222222111 11111111111 1111 22211110 0111111 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEEE-EEEecCceEEEEchhheE Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYT-VLESNDRPKMVLRQDQML 151 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vi 151 (383) .+|-+ | -.|++.++.+.+..-..|+++.....|++. +..++.-.+. ...+. .-..+.-.+.+++..|+= T Consensus 63 ~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~D~FN~~V~mtvpfyD~~ 132 (320) T protein:vir:97 63 SLLTN--N-----PSFLRRLVKHALHNKTTYVYKSPTYGWLIT-DSMTIEGLRA--RLTFTLPDPFNSAVTMTVPFYDVG 132 (320) T ss_pred eeeeC--C-----HHHHHHHHHHhhcccceEEeeCCccceeee-cceeeeeeee--eEEEecCcccceeEEEEeeeechh Confidence 12222 2 358999999998888899988776655532 2222221110 00000 000001112222222221 Q ss_pred EecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcc-cC Q lcl|Aclame:pro 152 HFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDN-SG 230 (383) Q Consensus 152 h~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n-~g 230 (383) -+ ..+++|..+-++.. -...+.....+-+.|.+....+++.+.+..=++.+++....+.++..-.+ -. T Consensus 133 IL-------dnpl~gv~tqe~gk----M~g~a~~~v~kkL~~~~~IKafi~Tdid~GLee~kD~~~~kIk~mq~~A~~~n 201 (320) T protein:vir:97 133 II-------DSPLVEVDTEEANK----MLEAAYSAVMKKLHNTGAIKAFISSDIDVGLEKMKEESDSKIKAMLATAELLS 201 (320) T ss_pred hh-------hhhhcccChHHhhH----HHHHHhhhhhhhccccceeEEEEecccchhHHHHHHHHHHHHHHHHHHHHHhc Confidence 11 11456766643222 12233444556677888899998877654334555555555554433222 34 Q ss_pred CceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHH--- Q lcl|Aclame:pro 231 RLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPI--- 307 (383) Q Consensus 231 ~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i--- 307 (383) +.-+++.|-+++.+.....-+. ..-.+..+...+.-|+||-.+|-+.. +.++...++.+++.|++.++ T Consensus 202 G~T~i~~~dDI~Qi~pDYS~sn--~~D~~l~~t~alS~y~m~~~IL~GsA-------te~~~Iaf~~~~V~PLL~Q~~~~ 272 (320) T protein:vir:97 202 GYTYIQRGDDVTQMMPDYTTSN--VTDFAAMRTFAASQLSVSDKILDGSA-------TDGEKVAVMFRFVEPILEQFREY 272 (320) T ss_pred CcccccCCcceeeecccccccc--hhHHHHHHHHHHhhcCCchhhccccC-------CcceeeehhhHhHHHHHHHhhhc Confidence 5778889999998876544332 23345556778999999999884322 22456778888999999996 Q ss_pred HHHHHhhcCCcee-eeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 308 VDELRLKMNAPDL-ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 308 ~~~l~~~l~~~~~-~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +-.|..++..+.| .| +. -.|-+.-|-+.. +|.+ ...+.-+|||-- T Consensus 273 Ek~Lvy~m~~E~FVs~-----mt--------------TGG~l~S~~~~~-~~~~-----------~~~~~~~~~~~~ 318 (320) T protein:vir:97 273 EPSLIYAMRDEFFVSF-----MT--------------TGGMLNSNRVDG-WGKE-----------KAPNESKGGDVG 318 (320) T ss_pred Ccceeeeeccceeeee-----ee--------------cCceeecccccc-cccc-----------cCCccccCCccc Confidence 4445444433322 12 10 134444443321 2222 223445666544 No 170 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=97.42 E-value=7.1e-05 Score=43.35 Aligned_cols=368 Identities=10% Similarity=0.021 Sum_probs=144.3 Q ss_pred Ccc------------c-chhcccc-c--cccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccce Q lcl|Aclame:pro 1 MGL------------L-TPKNFSK-R--NAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAH 64 (383) Q Consensus 1 Mg~------------~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 64 (383) +|+ | +.+-.+. + .......+... .-......+... ............+|+..++.+--.+ T Consensus 6 ~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~--i~~~~~~~~~~~--~~~~~~~n~~~~ivd~~~~~l~~~g 81 (485) T protein:vir:24 6 PGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERR--PEAIGVTVPVQM--QSLLAHVGYPRLYVDSIAERQAVEG 81 (485) T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhcCcccchhh--hhhhhccchHHHHHHHHhhhhccCc Confidence 111 1 1110000 0 00000000000 000000000000 0000112234445555555543345 Q ss_pred eEeecch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc-----------eEEeecCcceeeeecCC---- Q lcl|Aclame:pro 65 FKTENTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL-----------EHIPNSDVQINYLPGNM---- 128 (383) Q Consensus 65 ~~v~~~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---- 128 (383) +.+.+.. ....+.+-...-........+..+.+.+|.||+++..+.. .+.+.+|..+..+.+.. T Consensus 82 ~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~ 161 (485) T protein:vir:24 82 FRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRP 161 (485) T ss_pred eecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcCce Confidence 5544321 1111111111113456678888899999999998654321 12233333333322211 Q ss_pred ------------ceE-----------EEEEEecCceE------EEEchhheEEecccCccccCccccCcHHH-HHHHHHH Q lcl|Aclame:pro 129 ------------GIV-----------YTVLESNDRPK------MVLRQDQMLHFRLMPDPQYRYLIGRSPLE-SLQNALN 178 (383) Q Consensus 129 ------------~~~-----------~~~~~~~~~~~------~~~~~~~vih~r~~~~~~~~~~~G~spi~-~~~~~i~ 178 (383) +.. +++...++... ..+..=.|+||++ .....+.+|.|-+. .+...++ T Consensus 162 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n--~~~~~~~~G~s~i~~~v~~liD 239 (485) T protein:vir:24 162 AKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPN--RTRLSDLYGTSEITPELRSMTD 239 (485) T ss_pred eEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEecc--CcccCCcCCcccchhhHHHHHH Confidence 000 00001111100 0011112455543 22333457888765 3444444 Q ss_pred HHHHHHHHHHHHHhccCCcceEEEEcCcCCCHH--HHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHHH Q lcl|Aclame:pro 179 LDDKASKSNMSAMENQINPAGKLTISNYLSDGK--DLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKALA 255 (383) Q Consensus 179 ~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~ 255 (383) ..+.+..-.....+..+.|..++.-.+ .+.. ..+.-...|+. ..|.+..++ ++.++..++... ++.+. T Consensus 240 a~~~~~s~~~~~~~~~a~p~~~i~G~~--~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~q~~~~~--~e~~~ 310 (485) T protein:vir:24 240 AAARILMLMQATAELMGVPQRLIFGIK--PEEIGVDPETGQTLFDA-----YLARILAFEDAEGKIQQFSAAE--LANFT 310 (485) T ss_pred HHHHHHHHHHHHHHhhcchhhhhccCC--ccccccccccccchhhh-----cccceeccCCCCceEEeecccc--hHHHH Confidence 433333333333343444544443111 0100 00111122221 123455554 566666555433 44445 Q ss_pred HHHHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCC---ceee Q lcl|Aclame:pro 256 DNSAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNA---PDLE 321 (383) Q Consensus 256 e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~---~~~~ 321 (383) +..+..+..++..=++|++.+|....+..+.... +.....|...|...++.+....+..-.. ..++ T Consensus 311 ~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~ 390 (485) T protein:vir:24 311 NALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRME 390 (485) T ss_pred HHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceee Confidence 7777788888888999999998543221111110 1111112222222222221111100000 2455 Q ss_pred eechhhhccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCCccc--------------cccCCCCC-CCCC---- Q lcl|Aclame:pro 322 LDIKDMLDVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPDNLP--------------EFKPLTNE-TKGG---- 380 (383) Q Consensus 322 fd~~~ll~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~d~~--------------~~~~~~~~-~~gG---- 380 (383) +.+.+-...+..+.++.+.+++.+| +++..-+++++|+.+-+-..+- .......+ ..+. T Consensus 391 v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485) T protein:vir:24 391 TVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPT 470 (485) T ss_pred EEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCC Confidence 6666656678899999999998866 7887777777765432100000 00000000 0011 Q ss_pred ------------CCC Q lcl|Aclame:pro 381 ------------DDK 383 (383) Q Consensus 381 ------------d~~ 383 (383) |.= T Consensus 471 e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 471 PAPKPQPAIEGGDSA 485 (485) T ss_pred CCCCCccCCCCCCCC Confidence 111 No 171 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=97.42 E-value=7.2e-05 Score=43.30 Aligned_cols=365 Identities=11% Similarity=0.036 Sum_probs=148.3 Q ss_pred Ccccchhcccc---ccccccccccchhhhh---hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chh Q lcl|Aclame:pro 1 MGLLTPKNFSK---RNAKNMVYPSNPAFFT---TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TAT 72 (383) Q Consensus 1 Mg~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~ 72 (383) ..+.+....+. +..... ..+...... ............+..-+..+....+|+..++-+-+-|+.+.. ... T Consensus 33 ~~~i~~~~~~~~~~~~~~~Y-y~g~~~i~~r~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~ 111 (474) T protein:vir:95 33 IRLIDDHRKQLDKITVGQRY-YDKDNDIVKQMKKVDVYGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYSCEDESV 111 (474) T ss_pred HHHHHHHHHHHHHHHHHHHH-hcccCchhccccccccccccccccccceeccchHHHHHHHHHhhhccCCceeccCchHH Confidence 11111000000 000000 000000000 000000000000000112344555667777766666665432 222 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-e---EEEEEEecCceEE Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-I---VYTVLESNDRPKM 143 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~~~~~~~ 143 (383) ...+..-..+ ........+......+|.+|+++..+. +....++|..+..+.++. + . ++++...+..... T Consensus 112 ~~~l~~~~~n-~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~ 190 (474) T protein:vir:95 112 LKIIHDVLDT-RWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVE 190 (474) T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhcCcEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEcCeeEEE Confidence 2222221111 244455567778889999998875532 334445555554443321 1 1 1111111111111 Q ss_pred EEchhheEEecccC-------------------ccc---------cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 144 VLRQDQMLHFRLMP-------------------DPQ---------YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQI 195 (383) Q Consensus 144 ~~~~~~vih~r~~~-------------------~~~---------~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~ 195 (383) .+..+.+.+++... ... .....|.|-++-+...++..+.+.....+.++..+ T Consensus 191 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 270 (474) T protein:vir:95 191 FWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESV 270 (474) T ss_pred EEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 22222222221000 000 00124777787777777766655555555666666 Q ss_pred CcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 196 NPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDI 275 (383) Q Consensus 196 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~ 275 (383) .|..+++ +...+ ..+.+... ....+++.++++.+++.++..... ..+....+...+.|+..-++|..- T Consensus 271 ~p~lv~~--g~~~~--~~~~~~~~-------~~~~~~i~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~i~~~s~~p~~~ 338 (474) T protein:vir:95 271 ELIYILK--GYEGQ--DLEEFMRG-------LKYYKAINVDGDGGVETIQVEVPV-SSTKEYIDLMRAYIMEFGQGVDFQ 338 (474) T ss_pred Cceeeee--cCCcc--cchhhhhh-------hhccceeeccCCCceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCcccc Confidence 6665554 32211 11111111 122456666666666655544333 334567788889999999998532 Q ss_pred hccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHh Q lcl|Aclame:pro 276 LGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAK 344 (383) Q Consensus 276 lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~ 344 (383) .+. .+++.++... +.....|...|...++.|.+.++...-...+++.++.-+..|..+.++. +.+ T Consensus 339 ~~~-~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~v~f~~~~p~d~~e~a~~---~~~ 414 (474) T protein:vir:95 339 TDK-FGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLKMDVKDIEISFNFNRMMNDAEQSQI---IAQ 414 (474) T ss_pred ccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHHHH---HHh Confidence 211 1122222111 0111122223333333333333222222345555555555666665554 456 Q ss_pred CCCcCHHHHHHHhCCCCccCCcc--------------cc-----ccCCCCCCCCCCCC Q lcl|Aclame:pro 345 SGVLGAEQAQFILTRSGFLPDNL--------------PE-----FKPLTNETKGGDDK 383 (383) Q Consensus 345 ~G~~t~nE~R~~~g~~p~~~~d~--------------~~-----~~~~~~~~~gGd~~ 383 (383) .|+++...+.++++.-.-+..++ +. ........+.+|++ T Consensus 415 ~g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 472 (474) T protein:vir:95 415 SQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNDKE 472 (474) T ss_pred cCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccCCCCcCCCCCccCC Confidence 79999988888765322111110 00 00001111122222 No 172 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=97.40 E-value=7.5e-05 Score=43.21 Aligned_cols=370 Identities=14% Similarity=0.085 Sum_probs=159.1 Q ss_pred Ccccchhccc-----cccccc----cc------cccc-h-----hhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGLLTPKNFS-----KRNAKN----MV------YPSN-P-----AFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASD 59 (383) Q Consensus 1 Mg~~~~~~~~-----~~~~~~----~~------~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ 59 (383) ||++..+... +-.+.. .. ...+ . .+...+........+. ..-+..+....+++.+|+- T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A~l 79 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH-DKLMNSGTGNEIVVVAAEY 79 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccc-cccccCChHHHHHHHHHHh Confidence 9999875321 111110 00 0001 0 0001111111111111 1122334456677777777 Q ss_pred hccce--eEeecc---hhhhhhhCCCccC---CHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCcceee---- Q lcl|Aclame:pro 60 VSSAH--FKTENT---ATLNRLESPSSLI---GRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQINY---- 123 (383) Q Consensus 60 ia~~~--~~v~~~---~~~~l~~~PN~~~---s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~~---- 123 (383) +..-+ +.|... ....+....+... ....-....+...+-.|.+++.+..+. +...+++.+.... T Consensus 80 l~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ad~~~P~~~~g~ 159 (518) T protein:vir:78 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNE 159 (518) T ss_pred hcCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECCeeEEEEEcCCeeEEEeecCc Confidence 65544 333211 1112222222211 222333344555666777776554321 1111111111100 Q ss_pred ----------eecCCceEEEEEEe-------------------------cCceEEE-------------Echh------- Q lcl|Aclame:pro 124 ----------LPGNMGIVYTVLES-------------------------NDRPKMV-------------LRQD------- 148 (383) Q Consensus 124 ----------~~~~~~~~~~~~~~-------------------------~~~~~~~-------------~~~~------- 148 (383) ...+...+|..... +...... ...+ T Consensus 160 ~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e~~~ 239 (518) T protein:vir:78 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) T ss_pred EEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccccccCcccee Confidence 01111222211110 0000000 0000 Q ss_pred --------heEEecccCccc--cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEE-----cCcCCCHHHH Q lcl|Aclame:pro 149 --------QMLHFRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTI-----SNYLSDGKDL 213 (383) Q Consensus 149 --------~vih~r~~~~~~--~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~-----~~~~~~~~~~ 213 (383) -+.|+++...+. .....|+|.+.-+...++..+........-++. +.+..++.. .......... T Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~~~~~~~~~~~ 318 (518) T protein:vir:78 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKKVNKSTDKEE 318 (518) T ss_pred eccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh-CCceeeechhHhccCCCCCCCccc Confidence 123333321111 122359999999999998777776666666776 444544321 0000000000 Q ss_pred HHHHHHHHHHhcCcccCCceeccCCc----eeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHH Q lcl|Aclame:pro 214 ESAREEFEKANTGDNSGRLMVLPDGF----DYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI 289 (383) Q Consensus 214 ~~~~~~~~~~~~g~n~g~~~vl~~g~----~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~ 289 (383) -.+... ++.+.+-+. -.++|. .++.++..-...+. .+..+...+.|....|++|..+|.. ++..+++.. T Consensus 319 ~~fd~~-~~~y~~i~~----~~~~~~~~~~~i~~~~~~Ir~e~~-~~~~~~~l~~~~~~~G~s~~tfg~~-~~~~TATei 391 (518) T protein:vir:78 319 WSMNVD-EDYFMQFKG----TLDAGAKLNDMIQFMQGDFRDGSY-RETMEYFAQKAVSKSGYNPATFNLG-NREVKATEI 391 (518) T ss_pred cccCCC-CceEEEecC----cCCCCCccccceeeeecccChHHH-HHHHHHHHHHHHHhhCCChhhcCcc-cccccHHHH Confidence 000000 011110000 011222 35666666555554 5788888999999999999999864 333444333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----------hcC----------CceeeeechhhhccCHHHHHHHHHHHHhCCCcC Q lcl|Aclame:pro 290 DQIKATYLANLNSYVNPIVDELRL----------KMN----------APDLELDIKDMLDVDDSILINQVSNLAKSGVLG 349 (383) Q Consensus 290 e~~~~~~~~tl~p~~~~i~~~l~~----------~l~----------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t 349 (383) ...++....++.-..+.++.+|.. .++ ...+.+++++.+..|.++.++.+.+++.+|+|+ T Consensus 392 ~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS 471 (518) T protein:vir:78 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCC Confidence 322222222222222222222221 111 125788899999999999999999999999999 Q ss_pred HHHHHHHhCCCCccCCcc----------------c-cccCCCCCCCCC Q lcl|Aclame:pro 350 AEQAQFILTRSGFLPDNL----------------P-EFKPLTNETKGG 380 (383) Q Consensus 350 ~nE~R~~~g~~p~~~~d~----------------~-~~~~~~~~~~gG 380 (383) +.++-+++. +.+..++. + +.....-+.+|| T Consensus 472 ~e~~i~~~~-~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 472 VEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred HHHHHHHhC-CCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 998555442 12221110 0 001111234566 No 173 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=97.25 E-value=0.00011 Score=42.19 Aligned_cols=364 Identities=13% Similarity=0.071 Sum_probs=140.4 Q ss_pred Ccccch----hccc--ccccc-----ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec Q lcl|Aclame:pro 1 MGLLTP----KNFS--KRNAK-----NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN 69 (383) Q Consensus 1 Mg~~~~----~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~ 69 (383) |+--.- +... .+.++ ....+... .-......+...- ..-+.......+|+..++.+--..+.+.+ T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~--i~~~~~~~~~~~~--~~~~~~n~~~~ivd~~~~~l~~~g~~~~~ 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRR--LKTIGIGAPPELA--YLDVQPGWVATYLRTLSDRLDIEGFRISE 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccccccccchhHh--hhhhhcchHHHHHHHHHhhhccCceecCC Confidence 432211 1000 00000 00000000 0000000000000 00011233455666666654333343322 Q ss_pred ch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---------ceEEeecCcceeeeecCC----------- Q lcl|Aclame:pro 70 TA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---------LEHIPNSDVQINYLPGNM----------- 128 (383) Q Consensus 70 ~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~----------- 128 (383) .. ....+.+....-........+..+.+.+|.||+.+.... ..+...+|..+..+.+.. T Consensus 77 d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D~~~~~~~~~~i~~ 156 (480) T protein:vir:78 77 DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVTRAVRL 156 (480) T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEcCCCccceEEEEEE Confidence 21 111111111111345566778888999999998764311 112233333333332211 Q ss_pred -------ceEEEEEEecCceEEE---------------------EchhheEEecccCccccCccccCcHHHH-HHHHHHH Q lcl|Aclame:pro 129 -------GIVYTVLESNDRPKMV---------------------LRQDQMLHFRLMPDPQYRYLIGRSPLES-LQNALNL 179 (383) Q Consensus 129 -------~~~~~~~~~~~~~~~~---------------------~~~~~vih~r~~~~~~~~~~~G~spi~~-~~~~i~~ 179 (383) +...+......+.... +..=.|+||++ .+.....+|.|-++- +...++. T Consensus 157 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n--~~~~~~~~G~s~i~~~v~~l~Da 234 (480) T protein:vir:78 157 YTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTN--DPRLGNRYGRSEISPELRKVTDA 234 (480) T ss_pred EEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeec--ccccCCccCcccchhhHHHHHHH Confidence 1110000000000000 11113455543 222223467776653 4444554 Q ss_pred HHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 180 DDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 180 ~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~e~~ 258 (383) .+..........+-.+.|-.++. +...++...+.-...|... .+.++.++ ++.++..++.. +++.+.+.. T Consensus 235 ~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 305 (480) T protein:vir:78 235 ASRTLMNLQSASQILGTPLRVIS--GVTTDELTNDGENTTLDIY-----YGRILTLASEAAKISEFKAA--ELRNFAEEM 305 (480) T ss_pred HHHHHHHHHHHHHhhcchhhhhh--cCCccccccccccchhhhh-----hhhhccCCCCCceEEecCcc--CHHHHHHHH Confidence 44333333333333344544443 2211111111111122211 12233333 44566555543 345456777 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHH----HHHHHHHhh------cCC-------ceee Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVN----PIVDELRLK------MNA-------PDLE 321 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~----~i~~~l~~~------l~~-------~~~~ 321 (383) +..+..|+..=++|+..+|....+. ++.+.++..+. .|.--+. .+...|.+. +.+ ..++ T Consensus 306 ~~~i~~~~~~~~~p~~~~g~~~~n~---~Sg~Alk~~~~-~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~~i~ 381 (480) T protein:vir:78 306 EVFRKEAASITGLPPQYLSSSSENP---ASAEAIIATDS-RIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLE 381 (480) T ss_pred HHHHHHHhcccCCChHHhccccCcc---hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeee Confidence 8888999999999999998643221 12222221111 1111111 111112111 111 1344 Q ss_pred eechhhhccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCC-----------------------ccccc------ Q lcl|Aclame:pro 322 LDIKDMLDVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPD-----------------------NLPEF------ 370 (383) Q Consensus 322 fd~~~ll~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~-----------------------d~~~~------ 370 (383) +.+.+....+..+.++.+.+++.+| +++..-+++++|+.+-+-. +.... T Consensus 382 v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (480) T protein:vir:78 382 TVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVT 461 (480) T ss_pred EEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCC Confidence 5555555568888888888888766 6777767776665431110 00000 Q ss_pred --cCCCCCCCCCCCC Q lcl|Aclame:pro 371 --KPLTNETKGGDDK 383 (383) Q Consensus 371 --~~~~~~~~gGd~~ 383 (383) .......++|..+ T Consensus 462 ~~~~~~~~~~~~~~~ 476 (480) T protein:vir:78 462 ETKTETQTSPSGFNR 476 (480) T ss_pred CCCCccccccCCCCc Confidence 0000011122222 No 174 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=97.17 E-value=0.00014 Score=41.67 Aligned_cols=340 Identities=11% Similarity=0.050 Sum_probs=136.8 Q ss_pred CcccchhccccccccccccccchhhhhhhccCccccccc----HH--HH--hhhHHHHHHHHHHHHhhccceeEeecchh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVS----AL--SA--LQNTNVYSVINRIASDVSSAHFKTENTAT 72 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~--~~~~~v~~~i~~ia~~ia~~~~~v~~~~~ 72 (383) |..... +...... +..+......+. .+ .- +-.....-+|+.+|+.+-=--+...+... T Consensus 1 l~~~~~----r~~~~~~----------yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~~~d~~l 66 (410) T protein:vir:95 1 MNLYQS----RVNLRYK----------HYAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGVDSLADRLIFRAFANDDFNV 66 (410) T ss_pred CCcchh----hHHHHHH----------HhcCCCCccccchhccHHHHhHHHhhcchhHHHHHHhHhhhccccccCCCchH Confidence 222211 1000000 011111111000 00 00 11233445566665533212222222222 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecC--CceEEEE--EEe-cCce--- Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGN--MGIVYTV--LES-NDRP--- 141 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~--~~~-~~~~--- 141 (383) +.+. ..-+.......+..+.+++|.||+.+..+. ..+.+.+|..+..+.+. ....+.. ... .++. T Consensus 67 ~~i~----~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~~~~~al~~~~~~~~~~~~~ 142 (410) T protein:vir:95 67 TEIF----DRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGLLVEGYAVLARDDYNRPTL 142 (410) T ss_pred HHHH----hhcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCCceEEEEEEEEecCCCeEEE Confidence 2221 222334455677788889999999876532 12223333333332211 1111000 000 0000 Q ss_pred EEEEchh---------------------heEEecccCccccCccccCcHH----HHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 142 KMVLRQD---------------------QMLHFRLMPDPQYRYLIGRSPL----ESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 142 ~~~~~~~---------------------~vih~r~~~~~~~~~~~G~spi----~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) ...+.++ .|++|.+. +......|.|-| ..+...+.....-......++.+ T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~--~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~--- 217 (410) T protein:vir:95 143 EAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHR--PDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSW--- 217 (410) T ss_pred EEEEeCCcEEEEeeCCccccccCCCCCcceEEeccc--ccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcc--- Confidence 0111111 24455432 222234677744 33333333333333334444433 Q ss_pred cceEE-EEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-----CceeEecccChhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 197 PAGKL-TISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-----GFDYTQLEMKTDVFKALADNSAYSADQISKAFG 270 (383) Q Consensus 197 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fg 270 (383) |.-++ -.+. +....+.++... ++++.++. +.++..+ ...+++.+.+..+.....|+..-+ T Consensus 218 pqr~i~G~d~---d~~~~~~~~~~~---------~~i~~~~~~~~~~~~~v~q~--~~~~l~~~~~~l~~l~~~~a~~s~ 283 (410) T protein:vir:95 218 PQKYILGLDP---DAEPMEKWKATV---------SSLLTISSSDKGVKPSVGQF--TTASMSPFTEQLRTAAAGFAGEMG 283 (410) T ss_pred hhheeeccCC---CCCcCchhhhhh---------hhheeccCCCCCCcceEEec--CCCChHHHHHHHHHHHHHHhhhcC Confidence 33333 2221 112222222222 33455532 2444444 444566667999999999999999 Q ss_pred CCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----hc------C-----Cceeeeechhh---hccCH Q lcl|Aclame:pro 271 VPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRL----KM------N-----APDLELDIKDM---LDVDD 332 (383) Q Consensus 271 Vp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~----~l------~-----~~~~~fd~~~l---l~~d~ 332 (383) +|++.+|.......+..........+.....---+.+.+.+.+ .+ - ...+++.+.++ -..+. T Consensus 284 lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~ 363 (410) T protein:vir:95 284 LTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANTM 363 (410) T ss_pred CCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhhH Confidence 9999998643221111111111111111111111111111111 11 0 01233333322 22366 Q ss_pred HHHHHHHHHHHhC--CCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCC Q lcl|Aclame:pro 333 SILINQVSNLAKS--GVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGD 381 (383) Q Consensus 333 ~~~~~~~~~~~~~--G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd 381 (383) .+.++++.|+++. |+...+-+++++|+.+- +..+....... .-|+ T Consensus 364 a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~---~~~~~~~~e~~-~~g~ 410 (410) T protein:vir:95 364 TMIGDGVVKLNQALPGYINAETIRDLTGIAGD---MSAKPVVSEGG-SNGE 410 (410) T ss_pred HHHHHHHHHHHHhccCCccHHHHHHhcCCChH---HHHHHHHHHHH-hCCC Confidence 7788899999988 78888889999987632 21111111011 1122 No 175 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=97.12 E-value=0.00016 Score=41.35 Aligned_cols=358 Identities=6% Similarity=-0.006 Sum_probs=150.6 Q ss_pred Ccccchhccc------ccccc-----ccccccchhhhh----hhccCcccccccHHHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MGLLTPKNFS------KRNAK-----NMVYPSNPAFFT----TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg~~~~~~~~------~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) +-+...+..+ .+..+ ....+..+ .+. ....+.. ...-...-+..+....+|+..++-+-.-|+ T Consensus 22 ~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~-i~~~~~~~~~~~~~-~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~ 99 (472) T protein:vir:93 22 PETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPD-IVKEPKPVDATGAV-DPLKPDDRMITNFHANLVDQKVSYIVGKPI 99 (472) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccchhhccccc-cccccccccccchHHHHHHHHhhhhcccCe Confidence 1010000000 00000 00000000 000 0000000 000000011235566677777777766665 Q ss_pred Eee--cchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eEE---EE Q lcl|Aclame:pro 66 KTE--NTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IVY---TV 134 (383) Q Consensus 66 ~v~--~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~~---~~ 134 (383) .+. +......+..-..+ ........+......+|.||+++..+. ...-.++|..+..+.++. + ..+ ++ T Consensus 100 ~~~~~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~ 178 (472) T protein:vir:93 100 AFKHTDDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMY 178 (472) T ss_pred eeccCChHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccceEEEEcCCCCCceEEEEEEE Confidence 543 22222222221111 233455566788889999999876532 233345555544433211 1 110 00 Q ss_pred EEecCceEEEEchhh-----------------------------------eEEecccCccccCccccCcHHHHHHHHHHH Q lcl|Aclame:pro 135 LESNDRPKMVLRQDQ-----------------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNL 179 (383) Q Consensus 135 ~~~~~~~~~~~~~~~-----------------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~ 179 (383) ...+......+.... |+++++ ...|.|-++.+...++. T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-------n~~g~s~~e~v~~liDa 251 (472) T protein:vir:93 179 KLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-------NDLEISDIFMYKTLIDA 251 (472) T ss_pred EeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-------CCCCCCchhhhHHHHHH Confidence 000100011111111 233321 12478888887777876 Q ss_pred HHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHH Q lcl|Aclame:pro 180 DDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSA 259 (383) Q Consensus 180 ~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~ 259 (383) .+.+.....+.++..+.|..+++--.. +........+. ..+++.++++.+.+.+........ +....+ T Consensus 252 ~~~~~s~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 319 (472) T protein:vir:93 252 YNRRLSDLSNTFKDSNELTYVLTNYDD----QELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVEN-SKKYLD 319 (472) T ss_pred HHHHHHHHHHHHHHhcCceeEeecCCc----ccchhhHHHHh-------hccccccCCCCcceeEeecCCHHH-HHHHHH Confidence 666666666666777777666543221 11111222221 123444555545544443333323 346677 Q ss_pred HHHHHHHHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhh Q lcl|Aclame:pro 260 YSADQISKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDML 328 (383) Q Consensus 260 ~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll 328 (383) ...+.|+..-++|..-.+.. +++.++...+ .....|...|...++.+...++...-...+++.+.+-+ T Consensus 320 ~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~ 398 (472) T protein:vir:93 320 ELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNK 398 (472) T ss_pred HHHHHHHHHhCCCCCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeCCCC Confidence 77888999998875433221 1222221110 01111222233333333333322222235666677777 Q ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccc-cCCCCCC----CCCCCC Q lcl|Aclame:pro 329 DVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEF-KPLTNET----KGGDDK 383 (383) Q Consensus 329 ~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~-~~~~~~~----~gGd~~ 383 (383) ..|..+.++++.++ .|+++...+.++++.-.-+..++ +.. ....... ..+|++ T Consensus 399 p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 470 (472) T protein:vir:93 399 VANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNKE 470 (472) T ss_pred CCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccCcCcccCCCCCCCCCCCccc Confidence 78999999999887 47899888877765322111100 000 0000111 111111 No 176 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=97.07 E-value=0.00012 Score=42.02 Aligned_cols=325 Identities=15% Similarity=0.105 Sum_probs=111.0 Q ss_pred cchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHH--HHHHHHHHHHhhccceeEeecchhhhhhhCCCc Q lcl|Aclame:pro 4 LTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTN--VYSVINRIASDVSSAHFKTENTATLNRLESPSS 81 (383) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~i~~ia~~ia~~~~~v~~~~~~~l~~~PN~ 81 (383) +.- |.++...+. ........+.......-............-. -.++|...-+.||+.=-.+.-. +.+... T Consensus 1 Mgl-f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~-----~~~~~~ 73 (384) T protein:vir:49 1 MPI-FNITNLATE-SPPSNQDSFFDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLATAKIT-----TSRKQL 73 (384) T ss_pred Ccc-ccccccCcc-cccccchhhccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHhhCcee-----eecchh Confidence 442 332222221 1111111111111000000011111111000 0112222222222211111000 000000 Q ss_pred cCCHHHHHHHHHHHHHhcCCceEEEEecc------ceEEeecCcceeeeecCCceE-EEEEEecCceEEEEch-hheEEe Q lcl|Aclame:pro 82 LIGRFSFWQGALMQLCLSGNDYIPLVGQN------LEHIPNSDVQINYLPGNMGIV-YTVLESNDRPKMVLRQ-DQMLHF 153 (383) Q Consensus 82 ~~s~~~f~~~~~~~l~l~G~a~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~vih~ 153 (383) ..+...=|.+. .... ..++.-....+.+.++..+.+ ..+............. ...+.. T Consensus 74 ------------~~l~~~PN~~~--t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y 139 (384) T protein:vir:49 74 ------------QGIVDNPSNNA--NRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYY 139 (384) T ss_pred ------------hhhhhccCCCC--CHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEE Confidence 00100000000 0000 000000111111122222211 1100011111111110 011111 Q ss_pred cc------------cCccccCccccCcHHH-----HHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 154 RL------------MPDPQYRYLIGRSPLE-----SLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 154 r~------------~~~~~~~~~~G~spi~-----~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) +. ++.+.--.+++.++.. +....+........ .. T Consensus 140 ~~~~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~-----------------------------~~ 190 (384) T protein:vir:49 140 NITFDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQK-----------------------------AS 190 (384) T ss_pred EEEecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHH-----------------------------HH Confidence 10 0000000011221110 00011111111111 11 Q ss_pred HHHHHHHhc-CcccCCceeccCCce--------------------eEec--ccChhHHHH-HHHHH-HHHHHHHHHHhcC Q lcl|Aclame:pro 217 REEFEKANT-GDNSGRLMVLPDGFD--------------------YTQL--EMKTDVFKA-LADNS-AYSADQISKAFGV 271 (383) Q Consensus 217 ~~~~~~~~~-g~n~g~~~vl~~g~~--------------------~~~l--~~~~~~~~~-l~e~~-~~~~~~Ia~~fgV 271 (383) .+...+.+. |...++++-++++.. +-.+ +++...+.. ..+.. ...++.... -| T Consensus 191 ~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~--~I 268 (384) T protein:vir:49 191 DKLTLNALKNALNANGILKIKGGGLLDFKTKQSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTG--QF 268 (384) T ss_pred HHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHH--HH Confidence 122222221 122222222222211 1111 111111110 01110 001111100 01 Q ss_pred CHHHhcccc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 272 PSDILGGGT----STESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGV 347 (383) Q Consensus 272 p~~~lg~~~----~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~ 347 (383) ...+|... ......++.++..+.+..++.|.+..++++++..|... +.++.....+.+.......++.+++.|+ T Consensus 269 -a~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (384) T protein:vir:49 269 -AKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSELSKKLSCE-VDADILPAVDPTGSNYIGLINSMVKTGT 346 (384) T ss_pred -HHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hhhhhhhhhhccchHHHHHHHHHhhcCc Confidence 12233321 12233455667777778899999999999999988653 4455555455555555666778999999 Q ss_pred cCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 348 LGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 348 ~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +|+||+|++++..|+.+ |..+...+.+|++|||+- T Consensus 347 ~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gGd~~ 381 (384) T protein:vir:49 347 LAQNQGLYVLQQAEILP-KDLPEGETDSTLKGGETN 381 (384) T ss_pred ccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCCCCC Confidence 99999999999999987 566777789999999766 No 177 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=97.06 E-value=0.00019 Score=41.00 Aligned_cols=378 Identities=12% Similarity=0.117 Sum_probs=160.0 Q ss_pred Ccccch-------------hcc---ccccccc-cccccch------hhhhhhccCcccc---cccH--HHHhhhHHHHHH Q lcl|Aclame:pro 1 MGLLTP-------------KNF---SKRNAKN-MVYPSNP------AFFTTTVGGMQLS---YVSA--LSALQNTNVYSV 52 (383) Q Consensus 1 Mg~~~~-------------~~~---~~~~~~~-~~~~~~~------~~~~~~~~~~~~~---~~~~--~~~~~~~~v~~~ 52 (383) |.+|.+ ++. .+....+ .+..+.. +....+.++...+ .+.. +.++.+|.|.+| T Consensus 4 ~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEVd~A 83 (533) T protein:vir:58 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) T ss_pred cchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcchhhH Confidence 222221 110 1111111 1111111 0111111211111 1222 234568999999 Q ss_pred HHHHHHhhccc-----eeEee--cchh-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec----c-ceEEeecCc Q lcl|Aclame:pro 53 INRIASDVSSA-----HFKTE--NTAT-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----N-LEHIPNSDV 119 (383) Q Consensus 53 i~~ia~~ia~~-----~~~v~--~~~~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----~-~~~~~~~~~ 119 (383) |+.|.+.+.-. |+.+. +... ..+..+-...++...--...++.|.+.|..|..++.+ + .++..++|. T Consensus 84 ideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~lldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~elr~lDPr 163 (533) T protein:vir:58 84 LDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPY 163 (533) T ss_pred HHhhhceeeEecCCCceeEeecccccccHHHHHHHHHHhcchhhhhHHHHhhhhcceeEEEeccCCcccchhhheecCCe Confidence 99999876332 22221 1110 1111111123334444455677788999999987632 1 256778887 Q ss_pred ceeeeecC-CceEEEEEE------ecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 120 QINYLPGN-MGIVYTVLE------SNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAME 192 (383) Q Consensus 120 ~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ 192 (383) .+..+... ....|+.+. ..+.....++.+.|+|+..-..+.. +-+++|-+..+...+....-+.....-+-- T Consensus 164 ~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~-~~~iisyLhkAiKp~NQLkmiEDAlVIYRi 242 (533) T protein:vir:58 164 IFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNF-FPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) T ss_pred eeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCC-CCceehhhhHHHHHHHHHHHHHHHHHHHhh Confidence 77554433 222333222 1334457888999999864322222 346778888775555544433333322222 Q ss_pred ccCCcceEEEEc-CcCCCHHHHHHHHHHHHHHhcC---c-ccCCc----------eec----------cCCceeEecccC Q lcl|Aclame:pro 193 NQINPAGKLTIS-NYLSDGKDLESAREEFEKANTG---D-NSGRL----------MVL----------PDGFDYTQLEMK 247 (383) Q Consensus 193 ng~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g---~-n~g~~----------~vl----------~~g~~~~~l~~~ 247 (383) .-+.-+-++..+ +.+...++.+-++....++... + ..|.+ .++ ..|.+++.|.-. T Consensus 243 sRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg 322 (533) T protein:vir:58 243 VRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS 322 (533) T ss_pred cCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecCCC Confidence 223223333333 2232223333344444433211 1 12222 111 235677777643 Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------ceee Q lcl|Aclame:pro 248 TDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKMNA------PDLE 321 (383) Q Consensus 248 ~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~~------~~~~ 321 (383) . +..+ +-..+..+.+..+++||.+-|+...+.+.+. ....-..-|...|..+-..+.+.|.+.|.. ++++ T Consensus 323 -~-lgem-eDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~-eItRDEiKF~KFI~rLR~rF~~ll~~qLilk~iit~eew~ 398 (533) T protein:vir:58 323 -K-VDLA-EDVEYMLNRLISALKVPKAFIGYEGDVNAKN-TLATQDIKFNNTIKRIQGFFVEELERMVRMNKEFADQDFR 398 (533) T ss_pred -C-CCcH-HHHHHHHHHHHHHhCCCeeecCCCCCCccch-hhhHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhee Confidence 2 4433 6667778999999999999998654432222 110011123344444445566667666632 2344 Q ss_pred eech------hhhccC-HHHHHHHHHHH---HhC------------CCcCHHHHHHHhCCCCccC-----Cccccc---- Q lcl|Aclame:pro 322 LDIK------DMLDVD-DSILINQVSNL---AKS------------GVLGAEQAQFILTRSGFLP-----DNLPEF---- 370 (383) Q Consensus 322 fd~~------~ll~~d-~~~~~~~~~~~---~~~------------G~~t~nE~R~~~g~~p~~~-----~d~~~~---- 370 (383) |++. .+.... +..|+.+++.+ ++. -+++-.|+-+..+.+|+.+ +++... T Consensus 399 ~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~~~~~~~~e~~~~~~~~ 478 (533) T protein:vir:58 399 LVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLG 478 (533) T ss_pred eeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCCCCCCCcccccCCcccCc Confidence 4422 221111 12233322221 111 1122222222233332211 111000 Q ss_pred -cCCCCCCC----------------------------------CCCCC Q lcl|Aclame:pro 371 -KPLTNETK----------------------------------GGDDK 383 (383) Q Consensus 371 -~~~~~~~~----------------------------------gGd~~ 383 (383) .....+++ ||+++ T Consensus 479 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~ 526 (533) T protein:vir:58 479 ERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) T ss_pred cccCcccCCCChhhHhcccCCcccccccccccccchhhhhhcCCcccC Confidence 00000111 11111 No 178 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.05 E-value=0.00019 Score=40.97 Aligned_cols=366 Identities=6% Similarity=-0.019 Sum_probs=151.3 Q ss_pred Ccccchhcccc-cc--ccccccccchhhh---hhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chh Q lcl|Aclame:pro 1 MGLLTPKNFSK-RN--AKNMVYPSNPAFF---TTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TAT 72 (383) Q Consensus 1 Mg~~~~~~~~~-~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~ 72 (383) -.+.+....+. +- ......+..+-+. .....+ ......+..-+..+....+|+..++-+-.-|+.+.. ... T Consensus 41 ~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~-~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~~d~~~ 119 (483) T protein:vir:12 41 VRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG-AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEV 119 (483) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccccccc-cccccccccccccchHHHHHHHHhhhhcccCceeccCChHH Confidence 00000000000 00 0000000000000 000000 000000000122345666777777776666665432 222 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eE---EEEEEecCceEE Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IV---YTVLESNDRPKM 143 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~---~~~~~~~~~~~~ 143 (383) ...+..-..+ ........+..+...+|.+|+++..+. ..+-.++|..+..+.++. + .. +++...+..... T Consensus 120 ~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~ 198 (483) T protein:vir:12 120 VKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVE 198 (483) T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhCCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEEE Confidence 1222211111 233445566778889999998875532 234445555554443211 1 11 111111111111 Q ss_pred EEchhheEEecccC-------------------cccc---------CccccCcHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 144 VLRQDQMLHFRLMP-------------------DPQY---------RYLIGRSPLESLQNALNLDDKASKSNMSAMENQI 195 (383) Q Consensus 144 ~~~~~~vih~r~~~-------------------~~~~---------~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~ 195 (383) .+.+..+.|+..-. +..+ ....|.|-++.+...++..+.+.....+.++..+ T Consensus 199 ~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 278 (483) T protein:vir:12 199 YWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSN 278 (483) T ss_pred EEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhc Confidence 12222222211000 0000 0124777788777777766666655566666666 Q ss_pred CcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 196 NPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDI 275 (383) Q Consensus 196 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~ 275 (383) .|..+++--.. +..+.....++ ..+++.++++.+++.+....... .+....+...+.|+..-++|..- T Consensus 279 ~~~lv~~g~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~I~~~s~~p~~~ 346 (483) T protein:vir:12 279 ELTYVLTNYDD----QELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVE-NSKKYLDELYQKIMLFGQAVDFS 346 (483) T ss_pred CceeeeecCCc----ccchhHHHhhh-------hccccccCCCCcceEEeecCCHH-HHHHHHHHHHHHHHHHhCCCCCC Confidence 67665542221 11111222221 12344445454554444333332 23466777778888888887543 Q ss_pred hccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHh Q lcl|Aclame:pro 276 LGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAK 344 (383) Q Consensus 276 lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~ 344 (383) .+.. +++.+.-.. +.....|...+...++.+...++.+.-...+++.+.+-+..|..+.++.+.++ T Consensus 347 ~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl-- 423 (483) T protein:vir:12 347 SDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQS-- 423 (483) T ss_pred cccc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceeeEEeCCCCCCCHHHHHHHHHHH-- Confidence 3211 122221110 11111222333334443433333222224566777777888999999999988 Q ss_pred CCCcCHHHHHHHhCCCCccCCcc--------------ccccCCCC-----CCCCCCCC Q lcl|Aclame:pro 345 SGVLGAEQAQFILTRSGFLPDNL--------------PEFKPLTN-----ETKGGDDK 383 (383) Q Consensus 345 ~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~~~-----~~~gGd~~ 383 (383) .|+++...+.++++.-.-+..++ +....... .-+.|+++ T Consensus 424 ~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~e 481 (483) T protein:vir:12 424 MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNKE 481 (483) T ss_pred hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccccccCCcccCCCCCccc Confidence 58999998888775422111110 00000000 00111111 No 179 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=97.04 E-value=0.0002 Score=40.90 Aligned_cols=369 Identities=11% Similarity=0.054 Sum_probs=160.5 Q ss_pred Ccccchhccc--c-------cccc-----ccccccc------hhhhhhhccCcc-ccc------ccHHHHhhhHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFS--K-------RNAK-----NMVYPSN------PAFFTTTVGGMQ-LSY------VSALSALQNTNVYSVI 53 (383) Q Consensus 1 Mg~~~~~~~~--~-------~~~~-----~~~~~~~------~~~~~~~~~~~~-~~~------~~~~~~~~~~~v~~~i 53 (383) ||+|+++..- + ++.. .....+. ..+...+.+... ... ...+..........++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 9999986322 1 0100 0111110 011111111101 000 0011122334445555 Q ss_pred HHHHHhhccce--eEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCccee----- Q lcl|Aclame:pro 54 NRIASDVSSAH--FKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQIN----- 122 (383) Q Consensus 54 ~~ia~~ia~~~--~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~----- 122 (383) +.+|+-+..-| +.+.+......+.+--..-.........+...+..|.+++.+..+. +...+++.+.+. T Consensus 81 ~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~ad~~~P~~~d~~ 160 (500) T protein:vir:30 81 KKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQAPVFLPLQSNTQ 160 (500) T ss_pred HHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcCCeeEEEEEcCC Confidence 66666654433 3444433333333322222334445556666667788877654432 121111111100 Q ss_pred -----------ee-ecCCceEEEEEE----ecCc-eE---EEEc--------------------hhh----------eEE Q lcl|Aclame:pro 123 -----------YL-PGNMGIVYTVLE----SNDR-PK---MVLR--------------------QDQ----------MLH 152 (383) Q Consensus 123 -----------~~-~~~~~~~~~~~~----~~~~-~~---~~~~--------------------~~~----------vih 152 (383) .. .+....+|.... .++. .. ..+. +.+ ..| T Consensus 161 ~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f~~ 240 (500) T protein:vir:30 161 DVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIFTY 240 (500) T ss_pred CeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccEEE Confidence 00 011111111000 0010 00 0000 001 234 Q ss_pred ecccCccc--cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC-------CHHHHHHHHHHHH-- Q lcl|Aclame:pro 153 FRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS-------DGKDLESAREEFE-- 221 (383) Q Consensus 153 ~r~~~~~~--~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~-------~~~~~~~~~~~~~-- 221 (383) ++....+. .....|.|...-+...++..+.......+-++.|- ...++ +..+. +.+... ...+. T Consensus 241 ~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v--~~~~l~~~~~~~~g~~~~--~~~~d~~ 315 (500) T protein:vir:30 241 LKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAV--PESLTALTVRTTDGDVVP--RPRFESD 315 (500) T ss_pred ecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeee--chHHhcccCCCCCccccC--CcccCCC Confidence 54322221 12345999999999999877766666666676654 33332 11110 000000 00010 Q ss_pred -HHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 222 -KANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANL 300 (383) Q Consensus 222 -~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl 300 (383) +.+..-+. -.+++..++.++..-...+. .+..+...++|+...|+++..+|...++..+........+....++ T Consensus 316 ~~~~~~~~~----~~~~~~~i~~~~~~ir~e~~-~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~ 390 (500) T protein:vir:30 316 QNVYIRMGG----RDLDSSAIQDLTTPIRADDY-IKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMR 390 (500) T ss_pred cceEEEcCC----CCCcCcceeEeccccChHHH-HHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHH Confidence 01110000 01223446666555444454 5788888899999999999999876554332222111111111222 Q ss_pred HHHHHHHHHHHHhh------------cC------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCc Q lcl|Aclame:pro 301 NSYVNPIVDELRLK------------MN------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGF 362 (383) Q Consensus 301 ~p~~~~i~~~l~~~------------l~------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~ 362 (383) .-..+.++.+|... +. ...+.+++++-+..|.++.++...+++.+|+|+.-+++..+ .++ T Consensus 391 ~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~--~g~ 468 (500) T protein:vir:30 391 NSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKV--LNV 468 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc--CCC Confidence 22222233222221 11 13577888887888999999999999999999999988553 233 Q ss_pred cCCc----cccccCCCC---------CCCCCC Q lcl|Aclame:pro 363 LPDN----LPEFKPLTN---------ETKGGD 381 (383) Q Consensus 363 ~~~d----~~~~~~~~~---------~~~gGd 381 (383) ..++ ......... .--.|| T Consensus 469 ~eeea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:30 469 TEEKAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred CHHHHHHHHHHHHHhccccCCCCCccccccCC Confidence 2221 111111100 001222 No 180 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=97.04 E-value=0.0002 Score=40.90 Aligned_cols=369 Identities=11% Similarity=0.054 Sum_probs=160.5 Q ss_pred Ccccchhccc--c-------cccc-----ccccccc------hhhhhhhccCcc-ccc------ccHHHHhhhHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFS--K-------RNAK-----NMVYPSN------PAFFTTTVGGMQ-LSY------VSALSALQNTNVYSVI 53 (383) Q Consensus 1 Mg~~~~~~~~--~-------~~~~-----~~~~~~~------~~~~~~~~~~~~-~~~------~~~~~~~~~~~v~~~i 53 (383) ||+|+++..- + ++.. .....+. ..+...+.+... ... ...+..........++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 9999986322 1 0100 0111110 011111111101 000 0011122334445555 Q ss_pred HHHHHhhccce--eEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceEEeecCccee----- Q lcl|Aclame:pro 54 NRIASDVSSAH--FKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQIN----- 122 (383) Q Consensus 54 ~~ia~~ia~~~--~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~~~~~~~~~~----- 122 (383) +.+|+-+..-| +.+.+......+.+--..-.........+...+..|.+++.+..+. +...+++.+.+. T Consensus 81 ~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~ad~~~P~~~d~~ 160 (500) T protein:vir:98 81 KKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQAPVFLPLQSNTQ 160 (500) T ss_pred HHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcCCeeEEEEEcCC Confidence 66666654433 3444433333333322222334445556666667788877654432 121111111100 Q ss_pred -----------ee-ecCCceEEEEEE----ecCc-eE---EEEc--------------------hhh----------eEE Q lcl|Aclame:pro 123 -----------YL-PGNMGIVYTVLE----SNDR-PK---MVLR--------------------QDQ----------MLH 152 (383) Q Consensus 123 -----------~~-~~~~~~~~~~~~----~~~~-~~---~~~~--------------------~~~----------vih 152 (383) .. .+....+|.... .++. .. ..+. +.+ ..| T Consensus 161 ~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f~~ 240 (500) T protein:vir:98 161 DVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIFTY 240 (500) T ss_pred CeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccEEE Confidence 00 011111111000 0010 00 0000 001 234 Q ss_pred ecccCccc--cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC-------CHHHHHHHHHHHH-- Q lcl|Aclame:pro 153 FRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS-------DGKDLESAREEFE-- 221 (383) Q Consensus 153 ~r~~~~~~--~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~-------~~~~~~~~~~~~~-- 221 (383) ++....+. .....|.|...-+...++..+.......+-++.|- ...++ +..+. +.+... ...+. T Consensus 241 ~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~-~~i~v--~~~~l~~~~~~~~g~~~~--~~~~d~~ 315 (500) T protein:vir:98 241 LKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQ-RRVAV--PESLTALTVRTTDGDVVP--RPRFESD 315 (500) T ss_pred ecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCc-ceeee--chHHhcccCCCCCccccC--CcccCCC Confidence 54322221 12345999999999999877766666666676654 33332 11110 000000 00010 Q ss_pred -HHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 222 -KANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANL 300 (383) Q Consensus 222 -~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl 300 (383) +.+..-+. -.+++..++.++..-...+. .+..+...++|+...|+++..+|...++..+........+....++ T Consensus 316 ~~~~~~~~~----~~~~~~~i~~~~~~ir~e~~-~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~ 390 (500) T protein:vir:98 316 QNVYIRMGG----RDLDSSAIQDLTTPIRADDY-IKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMR 390 (500) T ss_pred cceEEEcCC----CCCcCcceeEeccccChHHH-HHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHH Confidence 01110000 01223446666555444454 5788888899999999999999876554332222111111111222 Q ss_pred HHHHHHHHHHHHhh------------cC------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCc Q lcl|Aclame:pro 301 NSYVNPIVDELRLK------------MN------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGF 362 (383) Q Consensus 301 ~p~~~~i~~~l~~~------------l~------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~ 362 (383) .-..+.++.+|... +. ...+.+++++-+..|.++.++...+++.+|+|+.-+++..+ .++ T Consensus 391 ~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~--~g~ 468 (500) T protein:vir:98 391 NSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKV--LNV 468 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhc--CCC Confidence 22222233222221 11 13577888887888999999999999999999999988553 233 Q ss_pred cCCc----cccccCCCC---------CCCCCC Q lcl|Aclame:pro 363 LPDN----LPEFKPLTN---------ETKGGD 381 (383) Q Consensus 363 ~~~d----~~~~~~~~~---------~~~gGd 381 (383) ..++ ......... .--.|| T Consensus 469 ~eeea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:98 469 TEEKAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred CHHHHHHHHHHHHHhccccCCCCCccccccCC Confidence 2221 111111100 001222 No 181 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=96.99 E-value=0.00022 Score=40.64 Aligned_cols=364 Identities=9% Similarity=-0.025 Sum_probs=156.5 Q ss_pred ccchhcccccccc----ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee--cchh---h Q lcl|Aclame:pro 3 LLTPKNFSKRNAK----NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE--NTAT---L 73 (383) Q Consensus 3 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~--~~~~---~ 73 (383) |+..+...+++.- ....+....+.. .......... ..-+..+.....|+..++-+-+-|..+. +... . T Consensus 1 ~~~~~~~~~~~r~~~l~~yy~g~~~~~~~-~~~~~~~~~~--~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~~~~~~ 77 (440) T protein:vir:95 1 MLAAFLGSQKQRLAILASYAQGDNFSILS-GHRRLDDEKA--DYRVRHKWGGYISSFATGYVIGNPVSIGVMEGGSADQL 77 (440) T ss_pred ChhhHHHHHHHHHHHHHHHhccCCccccc-ccccccccCC--cceeecchHHHHHHhhhhheeccCceEeeCCCccHHHH Confidence 4444322211100 000000000000 0000000000 0012234555666666666655555542 2221 1 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc---eEE---EEEEecCceEEE Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG---IVY---TVLESNDRPKMV 144 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~ 144 (383) ..+.+-...-........+..+.+.+|.+|+++..+. ...-..+|..+..+.+... ..+ ++...+...... T Consensus 78 ~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~v 157 (440) T protein:vir:95 78 STIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLPIYADKVNMTV 157 (440) T ss_pred HHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEEE Confidence 1222222222444455667778889999999875532 2233445555544432211 111 111111111112 Q ss_pred Echhh----------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 145 LRQDQ----------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 145 ~~~~~----------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) +..+. |+++++ + ..|.|-++.+...++..+.+.....+..+..+. T Consensus 158 yt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n---~----~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~ 230 (440) T protein:vir:95 158 YTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN---N----RFRMGDYESEISLIDAYDAGQSDTANYMSDLND 230 (440) T ss_pred EeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC---C----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhc Confidence 22222 333331 1 147777887777777666666666666666676 Q ss_pred cceEEEEcC--cCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHH Q lcl|Aclame:pro 197 PAGKLTISN--YLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSD 274 (383) Q Consensus 197 p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~ 274 (383) |..+++-.. ...++++...++..-.-... ........+++.+++.+...... +.+....+...+.|+..-++|.. T Consensus 231 ~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lt~~~~~-~~~~~~~~~l~~~i~~~s~~p~~ 307 (440) T protein:vir:95 231 AMLLVKGDLDGIKLSPEDAAKMKDANMLFLK--TGISTTGQQTTADASYIYKQYDV-NGTEAYKNRLANDIHRFSRIPNL 307 (440) T ss_pred ceeeeecccccCCCCccchhhhhhccceecc--cccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCccc Confidence 766665421 11133333333222111110 00111122333334333332222 22346777788999999999864 Q ss_pred HhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC----CceeeeechhhhccCHHHHHHHH Q lcl|Aclame:pro 275 ILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN----APDLELDIKDMLDVDDSILINQV 339 (383) Q Consensus 275 ~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~----~~~~~fd~~~ll~~d~~~~~~~~ 339 (383) -.+.. .++.++-..+ .....|...+...++.+...++..-. ...+++.+.+-+..|..+.++.+ T Consensus 308 ~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~ 386 (440) T protein:vir:95 308 DDDRF-NSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIKAY 386 (440) T ss_pred ccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHHHH Confidence 43321 1222221111 11112223333333333333322111 12456666777788999999999 Q ss_pred HHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccC--CCCCCCCCCCC Q lcl|Aclame:pro 340 SNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKP--LTNETKGGDDK 383 (383) Q Consensus 340 ~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~--~~~~~~gGd~~ 383 (383) .++ .|+++...+.++++...- +.++ +.... +.....++|+| T Consensus 387 ~kl--~g~iS~et~~~~l~~~d~-~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 387 IEA--GGEISQETLMENASFTDY-KTEHSRILKQGGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred HHH--hccCcHHHHHHhCCCCCc-HHHHHHHHHHHHHhhhhHHhhccCCCCCCcCCC Confidence 988 578998888777653211 1110 11111 11112233444 No 182 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=96.94 E-value=0.00025 Score=40.36 Aligned_cols=359 Identities=9% Similarity=0.019 Sum_probs=157.4 Q ss_pred Ccccchhcccccccc-----ccccccchhh---hhhhccCcc-cccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK-----NMVYPSNPAF---FTTTVGGMQ-LSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT- 70 (383) Q Consensus 1 Mg~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~- 70 (383) ..+++.+..+.+..+ ....+...-. ......... ........-+.++.....|+..++-+-+-|..+... T Consensus 25 ~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~~~~~~~ 104 (479) T protein:vir:79 25 VKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADD 104 (479) T ss_pred HHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCceeccCC Confidence 111111111100000 0000000000 000000000 000000001223455667777777776667654322 Q ss_pred -hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc-------eEEEEEEe-c Q lcl|Aclame:pro 71 -ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG-------IVYTVLES-N 138 (383) Q Consensus 71 -~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~ 138 (383) ....++..-..+ ........+......+|.+|.++..+. ...-.++|..+..+.++.. ..+|.... . T Consensus 105 ~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~y~~~~~~ 183 (479) T protein:vir:79 105 DNLTKLLNDLLGE-EFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAFIRFYYIEDID 183 (479) T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccceeEEEEeCCCCCceEEEEEEEEEeecC Confidence 222222222122 345556667788889999998875532 2333345555444332211 11111111 1 Q ss_pred Cce---EEEEchhh--------------------------------------------eEEecccCccccCccccCcHHH Q lcl|Aclame:pro 139 DRP---KMVLRQDQ--------------------------------------------MLHFRLMPDPQYRYLIGRSPLE 171 (383) Q Consensus 139 ~~~---~~~~~~~~--------------------------------------------vih~r~~~~~~~~~~~G~spi~ 171 (383) +.. ...+..+. |+++++ ...|.|-++ T Consensus 184 ~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-------n~~g~sd~~ 256 (479) T protein:vir:79 184 GNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKN-------NEKCVSDLT 256 (479) T ss_pred CceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecC-------CCCCCcchh Confidence 110 01122222 233321 114777788 Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHH Q lcl|Aclame:pro 172 SLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVF 251 (383) Q Consensus 172 ~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~ 251 (383) .+...++..+.+.....+.++..+.|-.+++--....+++.. .. ...++++.++++.+++.++..... T Consensus 257 ~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~----~~-------~~~~~~i~~~~~~~~~~l~~~~~~- 324 (479) T protein:vir:79 257 FYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFI----DN-------IRYYKSIKVDGGGGVDKLEINIPV- 324 (479) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccccch----hh-------hhhccceecCCCCcceEEeccCCH- Confidence 777777766666655666667666676665432211111111 11 123445666666665555543322 Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcC---- Q lcl|Aclame:pro 252 KALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMN---- 316 (383) Q Consensus 252 ~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~---- 316 (383) ..+....+...+.|+..-++|..-.+.. ++.++... +.....|...|...++.+...++..-. T Consensus 325 ~~~~~~~~~l~~~i~~~s~~p~~~~~~~--gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~ 402 (479) T protein:vir:79 325 EAKKELLDRLEKNIIIFGQGVNPESQNT--GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYD 402 (479) T ss_pred HHHHHHHHHHHHHHHHHhCccccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc Confidence 3345667777888888888875433221 22221110 011112222333333333333322211 Q ss_pred CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 317 APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLTNETKGGDDK 383 (383) Q Consensus 317 ~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~~~~~gGd~~ 383 (383) ...+++.+.+-+..|.++.++.+.++ .|+++...+.++++.-.-+..+. .......+..+++.|| T Consensus 403 ~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~e 478 (479) T protein:vir:79 403 YKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) T ss_pred cccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhccCcccCCCcCc Confidence 12456666777778999999999887 48999998888875322111111 1111112233344555 No 183 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=96.86 E-value=0.00029 Score=39.98 Aligned_cols=362 Identities=6% Similarity=-0.018 Sum_probs=152.1 Q ss_pred Ccccchhccc-ccc--ccccccccchhhhh----hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch-- Q lcl|Aclame:pro 1 MGLLTPKNFS-KRN--AKNMVYPSNPAFFT----TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA-- 71 (383) Q Consensus 1 Mg~~~~~~~~-~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~-- 71 (383) ..+.+....+ ++- ......... .... ....+.. ....+..-+..+....+|+..++-+-.-|+.+.... T Consensus 50 ~~~i~~~~~~~~r~~~l~~YY~g~~-~I~~~~~~~~~~~~~-~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~~d~~ 127 (492) T protein:vir:94 50 VRYIKQHLEKLPEISIGQEYYEQRP-DIVKEPKPVDATGAV-DPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDE 127 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccccccccccccccc-cccccccccccchHHHHHHHHHhhhcccCceeccCchH Confidence 1111100000 000 000000000 0000 0000000 000000112245566677777777766676553222 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eEE---EEEEecCceE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IVY---TVLESNDRPK 142 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~ 142 (383) ....+..-..+ ........+..+...+|.+|+++..+. ...-.++|..+..+.++. + ..+ ++........ T Consensus 128 ~~~~l~~~~~n-~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~ 206 (492) T protein:vir:94 128 VVKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 206 (492) T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeE Confidence 21112111111 234555677788899999998875532 234445555554443211 1 111 1110111111 Q ss_pred EEEchhheEEecccC-------------------cccc---------CccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 143 MVLRQDQMLHFRLMP-------------------DPQY---------RYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 143 ~~~~~~~vih~r~~~-------------------~~~~---------~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) ..+....|.++.... +.++ ....|.|-++.....++..+.+.....+.++.. T Consensus 207 ~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~ 286 (492) T protein:vir:94 207 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 286 (492) T ss_pred EEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh Confidence 111111222111000 0000 012477888888888877776666666666777 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHH Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSD 274 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~ 274 (383) +.|..+++--+. +....+...+. ..+++.++++.+++.+...... ..+....+...+.|+..-++|.. T Consensus 287 ~~p~lv~~g~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~~~s~~p~~ 354 (492) T protein:vir:94 287 NELTYVLKNYDD----QELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPV-ENSKKYLDELYQKIMLFGQAVDF 354 (492) T ss_pred cCceeeeecCCc----ccchhhHHHHh-------hccceecCCCCcceeEeccCCH-HHHHHHHHHHHHHHHHHhCCcCC Confidence 767666543221 11111222221 1234445555444444332222 22345666777788888888743 Q ss_pred HhccccccccchhHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHH Q lcl|Aclame:pro 275 ILGGGTSTESQHSNIDQIK--------------ATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVS 340 (383) Q Consensus 275 ~lg~~~~~~~~~~~~e~~~--------------~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~ 340 (383) -.+. .+++.++ ++++ ..|...|...++.+...++.+.....+++.+++-+..|..+.++++. T Consensus 355 ~~~~-~~~n~Sg---~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e~~~~~~ 430 (492) T protein:vir:94 355 SSDK-FGSAPSG---VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQ 430 (492) T ss_pred Cccc-cccCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecCCCCCCHHHHHHHHH Confidence 2221 1122211 2221 11222333333333333322222245677777778889999999999 Q ss_pred HHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 341 NLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEFKPLTNETKGGDDK 383 (383) Q Consensus 341 ~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~~~~~~gGd~~ 383 (383) ++. |+++...++++++.-.-+..++ +.........+.+|++ T Consensus 431 kl~--giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) T protein:vir:94 431 QSM--GIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADSAQQQER 485 (492) T ss_pred HHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCccccC Confidence 884 8999998888875432111111 0000000000111111 No 184 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=96.76 E-value=0.00036 Score=39.49 Aligned_cols=359 Identities=11% Similarity=-0.004 Sum_probs=158.8 Q ss_pred Ccccchhcccc-------ccccc-------cccccchhh--hhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccce Q lcl|Aclame:pro 1 MGLLTPKNFSK-------RNAKN-------MVYPSNPAF--FTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAH 64 (383) Q Consensus 1 Mg~~~~~~~~~-------~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 64 (383) -.+.+.....+ +..+. ...+..... .... .........+..=+.++-....|+..++-+-+-| T Consensus 21 ~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~p 99 (474) T protein:vir:10 21 EALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETG-GNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVP 99 (474) T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhc-ccccccccCcccccccchHHHHHHhHhhheeccc Confidence 11111100000 00000 000000000 0000 0000000000001224455667777777776777 Q ss_pred eEeecch-------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCce-E-- Q lcl|Aclame:pro 65 FKTENTA-------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGI-V-- 131 (383) Q Consensus 65 ~~v~~~~-------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~-- 131 (383) +.+.... ....+.+-............+......+|.||.++..+. ...-.++|..+.++.++.+. . T Consensus 100 v~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~ 179 (474) T protein:vir:10 100 VTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVIFVGDNILEPTYS 179 (474) T ss_pred eeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceEEEEcCCCceEEE Confidence 7654221 112333333333455677778888899999998865432 23333444444333222110 0 Q ss_pred --EEE-------------EEecCceEEEEc------------------hhheEEecccCccccCccccCcHHHHHHHHHH Q lcl|Aclame:pro 132 --YTV-------------LESNDRPKMVLR------------------QDQMLHFRLMPDPQYRYLIGRSPLESLQNALN 178 (383) Q Consensus 132 --~~~-------------~~~~~~~~~~~~------------------~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~ 178 (383) ++. ...+....+.+. .=.|+|+++ ...|.|-++.+...++ T Consensus 180 i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------~~~g~sd~e~v~~liD 252 (474) T protein:vir:10 180 LRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-------NKEMIGDAEKVIHLID 252 (474) T ss_pred EEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-------CCCCCCchHHHHHHHH Confidence 000 000001111111 011233331 1247777777777777 Q ss_pred HHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 179 LDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 179 ~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~ 258 (383) ....+.....+.++..+.|..+++ +...+++....++ ..|.+.+.+++.+++.+...... ..+.... T Consensus 253 a~d~~~S~~~~~~~~~~~~~l~i~--g~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~ 319 (474) T protein:vir:10 253 AYDLTMSDASSEISQTRLAYLVLR--GMGMSEEMIQETQ----------KSGAFELFDKDMDVKYLTKDVND-TMIENHL 319 (474) T ss_pred HHHHHHHHHHHHHHHhhcchhhhc--cCCCCchhhhhhh----------hcceeEecCCCCceeEEeccCCH-HHHHHHH Confidence 666555555555666666665554 3222333222111 12334555666666666544333 3345677 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC------ceee Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNA------PDLE 321 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~------~~~~ 321 (383) +...+.|+..-++|..-.+.. +++.++.... .....|...|...++.+...++.+-.+ ..++ T Consensus 320 ~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~ 398 (474) T protein:vir:10 320 DRIEKNIMRFAKSVNFNSDEF-NGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLI 398 (474) T ss_pred HHHHHHHHHHhCCcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccce Confidence 778889999989886443321 1222221111 111223333444444444444432111 2466 Q ss_pred eechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-------cc-ccCCCCCCCCCCC-C Q lcl|Aclame:pro 322 LDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-------PE-FKPLTNETKGGDD-K 383 (383) Q Consensus 322 fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-------~~-~~~~~~~~~gGd~-~ 383 (383) +.+.+-+..|..+.++++.++. |+++...+.++++.-+=+..++ -. ........+|+.+ + T Consensus 399 ~~f~~~~p~d~~e~a~~~~kl~--g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~~~~~~~ 467 (474) T protein:vir:10 399 FKFTRNIPVNKLEESQVLINLK--GQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEGDANDK 467 (474) T ss_pred EEeCCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCcCCC Confidence 7777777889999999999884 8999999888875432111111 00 0011111122211 1 No 185 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=96.76 E-value=0.00036 Score=39.49 Aligned_cols=359 Identities=11% Similarity=-0.004 Sum_probs=158.8 Q ss_pred Ccccchhcccc-------ccccc-------cccccchhh--hhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccce Q lcl|Aclame:pro 1 MGLLTPKNFSK-------RNAKN-------MVYPSNPAF--FTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAH 64 (383) Q Consensus 1 Mg~~~~~~~~~-------~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 64 (383) -.+.+.....+ +..+. ...+..... .... .........+..=+.++-....|+..++-+-+-| T Consensus 21 ~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~p 99 (474) T protein:vir:94 21 EALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETG-GNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVP 99 (474) T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhc-ccccccccCcccccccchHHHHHHhHhhheeccc Confidence 11111100000 00000 000000000 0000 0000000000001224455667777777776777 Q ss_pred eEeecch-------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCce-E-- Q lcl|Aclame:pro 65 FKTENTA-------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGI-V-- 131 (383) Q Consensus 65 ~~v~~~~-------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~-- 131 (383) +.+.... ....+.+-............+......+|.||.++..+. ...-.++|..+.++.++.+. . T Consensus 100 v~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~ 179 (474) T protein:vir:94 100 VTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVIFVGDNILEPTYS 179 (474) T ss_pred eeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceEEEEcCCCceEEE Confidence 7654221 112333333333455677778888899999998865432 23333444444333222110 0 Q ss_pred --EEE-------------EEecCceEEEEc------------------hhheEEecccCccccCccccCcHHHHHHHHHH Q lcl|Aclame:pro 132 --YTV-------------LESNDRPKMVLR------------------QDQMLHFRLMPDPQYRYLIGRSPLESLQNALN 178 (383) Q Consensus 132 --~~~-------------~~~~~~~~~~~~------------------~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~ 178 (383) ++. ...+....+.+. .=.|+|+++ ...|.|-++.+...++ T Consensus 180 i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------~~~g~sd~e~v~~liD 252 (474) T protein:vir:94 180 LRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-------NKEMIGDAEKVIHLID 252 (474) T ss_pred EEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-------CCCCCCchHHHHHHHH Confidence 000 000001111111 011233331 1247777777777777 Q ss_pred HHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 179 LDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 179 ~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~ 258 (383) ....+.....+.++..+.|..+++ +...+++....++ ..|.+.+.+++.+++.+...... ..+.... T Consensus 253 a~d~~~S~~~~~~~~~~~~~l~i~--g~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~ 319 (474) T protein:vir:94 253 AYDLTMSDASSEISQTRLAYLVLR--GMGMSEEMIQETQ----------KSGAFELFDKDMDVKYLTKDVND-TMIENHL 319 (474) T ss_pred HHHHHHHHHHHHHHHhhcchhhhc--cCCCCchhhhhhh----------hcceeEecCCCCceeEEeccCCH-HHHHHHH Confidence 666555555555666666665554 3222333222111 12334555666666666544333 3345677 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC------ceee Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNA------PDLE 321 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~------~~~~ 321 (383) +...+.|+..-++|..-.+.. +++.++.... .....|...|...++.+...++.+-.+ ..++ T Consensus 320 ~~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~ 398 (474) T protein:vir:94 320 DRIEKNIMRFAKSVNFNSDEF-NGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLI 398 (474) T ss_pred HHHHHHHHHHhCCcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccce Confidence 778889999989886443321 1222221111 111223333444444444444432111 2466 Q ss_pred eechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-------cc-ccCCCCCCCCCCC-C Q lcl|Aclame:pro 322 LDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-------PE-FKPLTNETKGGDD-K 383 (383) Q Consensus 322 fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-------~~-~~~~~~~~~gGd~-~ 383 (383) +.+.+-+..|..+.++++.++. |+++...+.++++.-+=+..++ -. ........+|+.+ + T Consensus 399 ~~f~~~~p~d~~e~a~~~~kl~--g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~~~~~~~ 467 (474) T protein:vir:94 399 FKFTRNIPVNKLEESQVLINLK--GQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEGDANDK 467 (474) T ss_pred EEeCCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCcCCC Confidence 7777777889999999999884 8999999888875432111111 00 0011111122211 1 No 186 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=96.70 E-value=0.0004 Score=39.23 Aligned_cols=359 Identities=8% Similarity=-0.049 Sum_probs=139.6 Q ss_pred Ccccchhccc--cccccc----cccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhhh Q lcl|Aclame:pro 1 MGLLTPKNFS--KRNAKN----MVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATLN 74 (383) Q Consensus 1 Mg~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~~ 74 (383) .-+...+... .+.++- ..+.+... ........+...-.............+|+.+++.+--..+.+.+..... T Consensus 29 ~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~-~~~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~gf~~~d~~~~~ 107 (501) T protein:vir:25 29 GALVADMWRLHISERQWLDRIYEYTKGLRG-RPEVPEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVGYRNALAKEND 107 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhccccCChhhhhhHhhhhcChHHHHHHHHHhhhcccceecCCccchH Confidence 1111111110 000000 00000000 0000000000000000001112345566655554422234333322222 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccc--eEEeecCcceeeee-cC--Cc-eE----EEEEEec-Cc--- Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNL--EHIPNSDVQINYLP-GN--MG-IV----YTVLESN-DR--- 140 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~--~~~~~~~~~~~~~~-~~--~~-~~----~~~~~~~-~~--- 140 (383) .+.+....-+.......+..+.+.+|.||+.+..+.- ..-..+|..+..+. +. .. .. ++..... +. T Consensus 108 ~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~~~i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~ 187 (501) T protein:vir:25 108 PAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEGPVFRTRSPRQILAVYADPSVDAWPQYALETWVAQKDAKPHRR 187 (501) T ss_pred HHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCCeEEEeccccEEEEEecCCCCcceeEEEEEEeeccccCccee Confidence 2222222222345556778888899999988765432 12233444444322 11 11 10 1100000 00 Q ss_pred -------eEEEEc--------------------------------------hhheEEecccCccccCccccCcHHHHHHH Q lcl|Aclame:pro 141 -------PKMVLR--------------------------------------QDQMLHFRLMPDPQYRYLIGRSPLESLQN 175 (383) Q Consensus 141 -------~~~~~~--------------------------------------~~~vih~r~~~~~~~~~~~G~spi~~~~~ 175 (383) ..+.+. .=.|+||++ .+... ..|.|-++.... T Consensus 188 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N--~~~~~-~~g~sdie~v~~ 264 (501) T protein:vir:25 188 GVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVN--GRDAD-DMIVGEVAPLIL 264 (501) T ss_pred EEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccC--ccccC-ccccchhhhhHH Confidence 000000 002444432 11112 247777766655 Q ss_pred HHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHH Q lcl|Aclame:pro 176 ALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKAL 254 (383) Q Consensus 176 ~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l 254 (383) .++..+..........+-.+.|--++. +...+ ..+. |+. ..++++.++ ++.++..++ ..+++.+ T Consensus 265 l~Da~~~~~s~~~~~~e~~a~p~~~i~--G~~~~--~~~~----~~~-----~~~~i~~~~~~~~~~~q~~--~~~~~~~ 329 (501) T protein:vir:25 265 LQQAINSVNFDRLIVSRFGANPQRVIS--GWTGS--KAEV----LKA-----SALRVWTFEDPEVKAQAFP--PASVEPY 329 (501) T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHh--CCCCC--ccch----hhh-----cccceeccCCCCceEEEec--ccChHHH Confidence 555555444444444444444433332 22111 1121 111 124466665 456665444 3445655 Q ss_pred HHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHH---HHHHHHHHHHHHHHHHHhhc------CC-------c Q lcl|Aclame:pro 255 ADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKAT---YLANLNSYVNPIVDELRLKM------NA-------P 318 (383) Q Consensus 255 ~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~---~~~tl~p~~~~i~~~l~~~l------~~-------~ 318 (383) .+..+..+..|+..-++|++.+|+... +.+. +.++.- +.....-..+.+...|.+.+ .+ . T Consensus 330 ~~~l~~~i~~i~~~s~~P~~~~~~~~~-N~Sg---~Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~~~~ 405 (501) T protein:vir:25 330 NLILEEMLQHVAMVAQISPAQVTGKMI-NVSA---EALAAAEANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTAADS 405 (501) T ss_pred HHHHHHHHHHHHhhcCCChhhhccccC-ChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccce Confidence 688888999999999999999985422 2222 222111 11111111111222222111 11 2 Q ss_pred eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHH-hCCCCcc-----------CC----cccccc--CCCCCCCCC Q lcl|Aclame:pro 319 DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFI-LTRSGFL-----------PD----NLPEFK--PLTNETKGG 380 (383) Q Consensus 319 ~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~-~g~~p~~-----------~~----d~~~~~--~~~~~~~gG 380 (383) .+++.+.+....+..+.++++.++++.|+ +...+.++ .|+.+-. .. +.+... ....+..++ T Consensus 406 ~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 484 (501) T protein:vir:25 406 GAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQ 484 (501) T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCC Confidence 45666677777899999999999998874 33333222 2332200 00 000000 000000000 Q ss_pred -----CCC Q lcl|Aclame:pro 381 -----DDK 383 (383) Q Consensus 381 -----d~~ 383 (383) +++ T Consensus 485 ~~~~~~~~ 492 (501) T protein:vir:25 485 AAAQALNE 492 (501) T ss_pred CCcccccc Confidence 111 No 187 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=96.68 E-value=0.00041 Score=39.13 Aligned_cols=357 Identities=11% Similarity=0.035 Sum_probs=145.1 Q ss_pred Ccccchhcccc-c--cccccccccchh----hhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--ch Q lcl|Aclame:pro 1 MGLLTPKNFSK-R--NAKNMVYPSNPA----FFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TA 71 (383) Q Consensus 1 Mg~~~~~~~~~-~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~ 71 (383) ..+.+..-.+. + .......+...- ............ .+..-+..+....+|+..++-+-.-|+.+.. .. T Consensus 33 ~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~--~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~ 110 (474) T protein:vir:97 33 VRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYD--KPDWRITTNFHQNLVDQKVSYVASKPVTYSCEDEN 110 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccc--cCcceeecchHHHHHHHHHhhhhcCCceeccCcHH Confidence 11111000000 0 000000000000 000000000000 0000112345556677777777666766532 22 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE---EEEEEecCceE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV---YTVLESNDRPK 142 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~ 142 (383) ...++..-+.+ ........+......+|.+|+++..+. ..+..++|..+..+.++. ... .++...+.... T Consensus 111 ~~~~l~~~~~n-~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~ 189 (474) T protein:vir:97 111 VLKVIHDVLDT-RWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKV 189 (474) T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEE Confidence 23333322222 344555666788889999998875532 333444555554443321 110 00000000001 Q ss_pred EEEchhh-----------------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQ-----------------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSN 187 (383) Q Consensus 143 ~~~~~~~-----------------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~ 187 (383) ..+..+. |+++++ ...|.|-++.+...++..+.+.... T Consensus 190 ~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------n~~g~sd~e~v~~liDa~n~~~s~~ 262 (474) T protein:vir:97 190 EFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-------NPEEVSDIWMYKSIIDAIDKRLSDA 262 (474) T ss_pred EEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-------CcCCCCcHHHHHHHHHHHHHHHHHH Confidence 1111222 333321 1257787887777777666665555 Q ss_pred HHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 188 MSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISK 267 (383) Q Consensus 188 ~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~ 267 (383) .+.++..+.|..+++ +...+ ..+.+... ....+++.+++|.+++.++..... ..+....+...+.|.. T Consensus 263 ~~~~~~~~~~~lv~~--g~~~~--~~~~~~~~-------~~~~~~i~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~~ 330 (474) T protein:vir:97 263 QNMFDESVELIYILK--GYEGE--DLEEFMRG-------LKYYKAINVDGDGGVETIQVEVPV-SSTKEYIDLMRVYIME 330 (474) T ss_pred HHHHHHhcCceeeee--cCCcc--cchhhhhh-------hhccceeeccCCCceeEEeecCCH-HHHHHHHHHHHHHHHH Confidence 555666666665554 32211 11111111 123456666666665555543322 2334566777788888 Q ss_pred HhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHH Q lcl|Aclame:pro 268 AFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILI 336 (383) Q Consensus 268 ~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~ 336 (383) .-++|..-... .+++.++-.. +.....|...|...++.+.+.++...-...+++.+++-+..|..+.+ T Consensus 331 ~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a 409 (474) T protein:vir:97 331 FGQGVDFQTDK-FGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQS 409 (474) T ss_pred HhCccccCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHH Confidence 88887432211 1122221000 01111222233333333333332222223455555554445555555 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccccCC---C-CCCCC-CCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEFKPL---T-NETKG-GDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~---~-~~~~g-Gd~~ 383 (383) + .+.++|+++...+.++++.-.-+..+. +..... . .+.++ ++++ T Consensus 410 ~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (474) T protein:vir:97 410 Q---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKE 472 (474) T ss_pred H---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccc Confidence 4 455679999999988875321100100 000000 0 00001 1111 No 188 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=96.68 E-value=0.00041 Score=39.13 Aligned_cols=357 Identities=11% Similarity=0.035 Sum_probs=145.1 Q ss_pred Ccccchhcccc-c--cccccccccchh----hhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--ch Q lcl|Aclame:pro 1 MGLLTPKNFSK-R--NAKNMVYPSNPA----FFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TA 71 (383) Q Consensus 1 Mg~~~~~~~~~-~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~ 71 (383) ..+.+..-.+. + .......+...- ............ .+..-+..+....+|+..++-+-.-|+.+.. .. T Consensus 33 ~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~--~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~ 110 (474) T protein:vir:94 33 VRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYD--KPDWRITTNFHQNLVDQKVSYVASKPVTYSCEDEN 110 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccc--cCcceeecchHHHHHHHHHhhhhcCCceeccCcHH Confidence 11111000000 0 000000000000 000000000000 0000112345556677777777666766532 22 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE---EEEEEecCceE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV---YTVLESNDRPK 142 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~ 142 (383) ...++..-+.+ ........+......+|.+|+++..+. ..+..++|..+..+.++. ... .++...+.... T Consensus 111 ~~~~l~~~~~n-~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~ 189 (474) T protein:vir:94 111 VLKVIHDVLDT-RWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKV 189 (474) T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCeEEE Confidence 23333322222 344555666788889999998875532 333444555554443321 110 00000000001 Q ss_pred EEEchhh-----------------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQDQ-----------------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSN 187 (383) Q Consensus 143 ~~~~~~~-----------------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~ 187 (383) ..+..+. |+++++ ...|.|-++.+...++..+.+.... T Consensus 190 ~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------n~~g~sd~e~v~~liDa~n~~~s~~ 262 (474) T protein:vir:94 190 EFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-------NPEEVSDIWMYKSIIDAIDKRLSDA 262 (474) T ss_pred EEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-------CcCCCCcHHHHHHHHHHHHHHHHHH Confidence 1111222 333321 1257787887777777666665555 Q ss_pred HHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 188 MSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISK 267 (383) Q Consensus 188 ~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~ 267 (383) .+.++..+.|..+++ +...+ ..+.+... ....+++.+++|.+++.++..... ..+....+...+.|.. T Consensus 263 ~~~~~~~~~~~lv~~--g~~~~--~~~~~~~~-------~~~~~~i~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~~ 330 (474) T protein:vir:94 263 QNMFDESVELIYILK--GYEGE--DLEEFMRG-------LKYYKAINVDGDGGVETIQVEVPV-SSTKEYIDLMRVYIME 330 (474) T ss_pred HHHHHHhcCceeeee--cCCcc--cchhhhhh-------hhccceeeccCCCceeEEeecCCH-HHHHHHHHHHHHHHHH Confidence 555666666665554 32211 11111111 123456666666665555543322 2334566777788888 Q ss_pred HhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHH Q lcl|Aclame:pro 268 AFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILI 336 (383) Q Consensus 268 ~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~ 336 (383) .-++|..-... .+++.++-.. +.....|...|...++.+.+.++...-...+++.+++-+..|..+.+ T Consensus 331 ~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a 409 (474) T protein:vir:94 331 FGQGVDFQTDK-FGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQS 409 (474) T ss_pred HhCccccCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHH Confidence 88887432211 1122221000 01111222233333333333332222223455555554445555555 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccccCC---C-CCCCC-CCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEFKPL---T-NETKG-GDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~---~-~~~~g-Gd~~ 383 (383) + .+.++|+++...+.++++.-.-+..+. +..... . .+.++ ++++ T Consensus 410 ~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (474) T protein:vir:94 410 Q---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKE 472 (474) T ss_pred H---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccc Confidence 4 455679999999988875321100100 000000 0 00001 1111 No 189 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=96.67 E-value=0.00042 Score=39.09 Aligned_cols=367 Identities=10% Similarity=-0.003 Sum_probs=158.4 Q ss_pred Ccc----cchhcc---cccccc-----ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee Q lcl|Aclame:pro 1 MGL----LTPKNF---SKRNAK-----NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE 68 (383) Q Consensus 1 Mg~----~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~ 68 (383) +.. +.++.. .+..++ ....+...... ...... .......-+..+....+|+..++-+-.-|+.+. T Consensus 37 ~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~--~~~~~~-~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~ 113 (501) T protein:vir:27 37 MVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVL--QFGRRK-DREMADKRAVHNYGRMISKFKTGYLAGNPIRVE 113 (501) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--ccCccC-ccccccceeccchHHHHHHHHhhhhcccCeeEe Confidence 211 111100 000000 00000000000 000000 000001112345566677777777766676553 Q ss_pred cch------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-e----EE Q lcl|Aclame:pro 69 NTA------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-I----VY 132 (383) Q Consensus 69 ~~~------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~----~~ 132 (383) ... ....+.+-+..-........+..+...+|.||+++..+. ...-.++|..+..+.++. + . .+ T Consensus 114 ~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~ 193 (501) T protein:vir:27 114 YDDNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKRLNPLETFVIYDNSLEDNSIAAVRY 193 (501) T ss_pred cCCccchHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEEEccceeEEEecCCCCCceEEEEEE Confidence 321 112222222223555677788888999999999876532 223334444444332211 1 1 11 Q ss_pred EEEEec-Cce--EEEEchhh------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 133 TVLESN-DRP--KMVLRQDQ------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASK 185 (383) Q Consensus 133 ~~~~~~-~~~--~~~~~~~~------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~ 185 (383) +..... +.. ...+..+. |++++. ...|.|.++.+...++....+.. T Consensus 194 ~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------n~~g~sd~e~v~~liDa~d~~~S 266 (501) T protein:vir:27 194 YNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLN-------NVDGIGDYETELYLIDLYDSAES 266 (501) T ss_pred EEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecC-------CCCCCCchhhhHHHHHHHHHHHH Confidence 111000 000 01111222 233321 12578888888888877766666 Q ss_pred HHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 186 SNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQI 265 (383) Q Consensus 186 ~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~I 265 (383) ...+.+...+.|-.+++-.....+++....++... ...-...+......++.++..++....+ +.+....+...+.| T Consensus 267 ~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I 343 (501) T protein:vir:27 267 DTANHMSDMADAILAIYGDLALPKGMQASDMKRTR--LMQLKPPKSADGKEGTVKAEYLTKSYDV-SGAEAYKTRLNRDI 343 (501) T ss_pred HHHHHHHHhcCceeeeecCccCCcccchhhhhhcC--ceeecccccccCCCCCcceeeeeccCCH-HHHHHHHHHHHHHH Confidence 66666666666666655332222222322222110 0000111122223444555544433322 23445667777889 Q ss_pred HHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC-----ceeeeechhhhc Q lcl|Aclame:pro 266 SKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNA-----PDLELDIKDMLD 329 (383) Q Consensus 266 a~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~-----~~~~fd~~~ll~ 329 (383) +..-++|..-.+.. .++.++...+ .....|...|...++.+...++..-.. ..+++.+.+.+. T Consensus 344 ~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p 422 (501) T protein:vir:27 344 HIFTNIPDMSDTNF-SGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLP 422 (501) T ss_pred HHHhCCcccCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCC Confidence 99999986443321 2222221111 011122223333333333333221111 136677778788 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc----------------------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 330 VDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL----------------------PEFKPLTNETKGGDDK 383 (383) Q Consensus 330 ~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~----------------------~~~~~~~~~~~gGd~~ 383 (383) .|..+.++++.++ .|+++..-+.++++.-.-|..++ .....+..+..+|||+ T Consensus 423 ~n~~e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~ 496 (501) T protein:vir:27 423 KSLNEQVSILTGL--GGQVSQETALSLSGLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDF 496 (501) T ss_pred cCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccc Confidence 8999999999887 47899888887764321000110 0000011112344444 No 190 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=96.63 E-value=0.00045 Score=38.92 Aligned_cols=365 Identities=12% Similarity=0.065 Sum_probs=140.9 Q ss_pred Ccccch----hccc--ccccc-----ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec Q lcl|Aclame:pro 1 MGLLTP----KNFS--KRNAK-----NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN 69 (383) Q Consensus 1 Mg~~~~----~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~ 69 (383) |+--.- +... ++.++ ....+... .-......+... ...-........+|+..++.+--..+.+.+ T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~--i~~~~~~~~~~~--~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~ 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRR--LKTIGIGAPPEL--AYLDVQPGWVATYLRTLSDRLDIEGFRISE 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhcccccchhh--hhhhhhcchHHHHHHHHHhhhccCceecCC Confidence 332211 1000 00000 00000000 000000000000 000011223455566666654333343322 Q ss_pred ch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---------ceEEeecCcceeeeecCC--c-eE----E Q lcl|Aclame:pro 70 TA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---------LEHIPNSDVQINYLPGNM--G-IV----Y 132 (383) Q Consensus 70 ~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~-~~----~ 132 (383) .. ....+.+-...-........+..+.+.+|.||+.+.... ..+...+|..+..+.+.. + .. + T Consensus 77 d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~i~~ 156 (480) T protein:vir:78 77 DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVTRAVRL 156 (480) T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEcCCCccceEEEEEE Confidence 11 111111111111345566778888999999998764311 112223333333332211 0 00 0 Q ss_pred E-----------EEEecCceEEE---------------------EchhheEEecccCccccCccccCcHHH-HHHHHHHH Q lcl|Aclame:pro 133 T-----------VLESNDRPKMV---------------------LRQDQMLHFRLMPDPQYRYLIGRSPLE-SLQNALNL 179 (383) Q Consensus 133 ~-----------~~~~~~~~~~~---------------------~~~~~vih~r~~~~~~~~~~~G~spi~-~~~~~i~~ 179 (383) + .........+. +..=.|+||.+ .......+|.|-++ .+...++. T Consensus 157 ~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n--~~~~~~~~G~sdi~~~i~~l~Da 234 (480) T protein:vir:78 157 YTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTN--DPRLGNRYGRSEISPELRKVTDA 234 (480) T ss_pred EEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeec--ccccCCccCccchhHHHHHHHHH Confidence 0 00000000000 11113455543 22222346777664 34444444 Q ss_pred HHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 180 DDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 180 ~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~e~~ 258 (383) .+..........+-.+.|-.++. +...++...+.-...|... .+.++.++ ++.++..+.. .+++.+.+.. T Consensus 235 ~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 305 (480) T protein:vir:78 235 ASRTLMNLQSASQILGTPLRVIS--GVTTDELTNDGENTTLDIY-----YGRILTLASEAAKISEFKA--AELRNFAEEM 305 (480) T ss_pred HHHHHHHHHHHHHhhcchhhhhh--CCCccccccccccchhhhh-----hhhhccCCCCCceEEecCc--cCHHHHHHHH Confidence 33333333333333344444433 2211111111111112211 12344443 3456655444 3445556778 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcC--Cceeee Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMN--APDLEL 322 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~--~~~~~f 322 (383) +..+..|+.+-++|++.+|....+ .+..+.++. .|...|.-.++.+........- ...+++ T Consensus 306 ~~~i~~~~~~~~~p~~~fg~~~~n---~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v 382 (480) T protein:vir:78 306 EVFRKEAASITGLPPQYLSSSSEN---PASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLET 382 (480) T ss_pred HHHHHHHhcccCCCHHHhccccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeE Confidence 888899999999999999863222 111122211 1111122222211111110000 013555 Q ss_pred echhhhccCHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCccCCcc----------c--------cccCCCCCC-CCC- Q lcl|Aclame:pro 323 DIKDMLDVDDSILINQVSNLAKSG--VLGAEQAQFILTRSGFLPDNL----------P--------EFKPLTNET-KGG- 380 (383) Q Consensus 323 d~~~ll~~d~~~~~~~~~~~~~~G--~~t~nE~R~~~g~~p~~~~d~----------~--------~~~~~~~~~-~gG- 380 (383) .+.+....+..+.++.+.+++.+| +++..-+++++|+.+-+-..+ + .......+- .+| T Consensus 383 ~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (480) T protein:vir:78 383 VWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTE 462 (480) T ss_pred EecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCC Confidence 565656678888899999888866 677777788777654211100 0 000000110 111 Q ss_pred -CCC Q lcl|Aclame:pro 381 -DDK 383 (383) Q Consensus 381 -d~~ 383 (383) +++ T Consensus 463 ~~~~ 466 (480) T protein:vir:78 463 TKTE 466 (480) T ss_pred CCCc Confidence 222 No 191 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=96.63 E-value=0.00045 Score=38.92 Aligned_cols=361 Identities=10% Similarity=0.038 Sum_probs=141.8 Q ss_pred Ccccchhcccccc--c-----cccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecchhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN--A-----KNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTATL 73 (383) Q Consensus 1 Mg~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~~~ 73 (383) .-+++++...... + .....+ ... .-......+... ...-+-......+|+..++.+--..+.+.+. . T Consensus 6 ~~~i~~l~~~~~~~~~r~~~l~~Yy~G-~~~-i~~~~~~~~~~~--~~~k~~~n~~~~ivd~~~~~l~~~g~~~~d~--~ 79 (441) T protein:vir:80 6 LALIEGMYDRIQRLSSWHCCIEGYYEG-SNR-VRDLGVAIPPEL--QRVQTVVSWPGIAVDALEERLDWLGWTNGDG--Y 79 (441) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-chhcCcccchhh--hhhhhhcchHHHHHHHHHhhhccccccCCCh--H Confidence 1112221111000 0 000000 000 000000000000 0000112233445555555431112222111 1 Q ss_pred hhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC----------------ceEEEE Q lcl|Aclame:pro 74 NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM----------------GIVYTV 134 (383) Q Consensus 74 ~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~----------------~~~~~~ 134 (383) . +.+-...-+.......+..+..++|.||+++..+. ...-..+|..+..+.+.. ...+.. T Consensus 80 ~-l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 158 (441) T protein:vir:80 80 G-LDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEVVEAE 158 (441) T ss_pred H-HHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCCCCceeEEEEEEEEecCceEEEE Confidence 1 11111112456677788888999999999875532 122333444433322211 000000 Q ss_pred EE---------ecC-ceEE-------EEchhheEEecccCccccCccccCcHHH-HHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 135 LE---------SND-RPKM-------VLRQDQMLHFRLMPDPQYRYLIGRSPLE-SLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 135 ~~---------~~~-~~~~-------~~~~~~vih~r~~~~~~~~~~~G~spi~-~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) .+ ..+ +... .+..=.|+||.+ .+......|.|-+. .+...++..+....-.....+-.+. T Consensus 159 vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n--~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~ 236 (441) T protein:vir:80 159 LLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVN--RRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAY 236 (441) T ss_pred EEecCeEEEEEEcCCcceeeccccccCCCceeEEEeec--cccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcC Confidence 00 000 0000 111112456553 22233446887653 3444454444333333334444444 Q ss_pred cceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-----CceeEecccChhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 197 PAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-----GFDYTQLEMKTDVFKALADNSAYSADQISKAFGV 271 (383) Q Consensus 197 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgV 271 (383) |-.+++ +...+....+. ++. ..++++.+++ +.++..++ ..+++.+.+..+..+..|+..-++ T Consensus 237 ~~~~i~--G~~~~~~~~~~----~~~-----~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~~~~~~~ 303 (441) T protein:vir:80 237 PQRWVT--GVSADEFSQPG----WVL-----SMASVWAVDKDDDGDTPNVGSFP--VNSPTPYSDQMRLLAQLTAGEAAV 303 (441) T ss_pred ceeeee--cCCccccccch----hhh-----cccccccCCCCCCCCcceeEecC--ccchHHHHHHHHHHHHHHhcccCC Confidence 544443 32222111111 111 1123333332 23444333 334455567788888999999999 Q ss_pred CHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC----CceeeeechhhhccCHHHHH Q lcl|Aclame:pro 272 PSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN----APDLELDIKDMLDVDDSILI 336 (383) Q Consensus 272 p~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~----~~~~~fd~~~ll~~d~~~~~ 336 (383) |++.+|.......+..... .....|...|.-.++.+...++..-. ...+++.+.+.+..+..+.+ T Consensus 304 p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~a 383 (441) T protein:vir:80 304 PERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATA 383 (441) T ss_pred CHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHH Confidence 9999876432211111110 11111222222222222222221111 12456667777788999999 Q ss_pred HHHHHHHhCCCcC--HHHHHHHhCCCCccCCccccc--------cCCCCCCCCCCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLG--AEQAQFILTRSGFLPDNLPEF--------KPLTNETKGGDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t--~nE~R~~~g~~p~~~~d~~~~--------~~~~~~~~gGd~~ 383 (383) +++.+++++|+.. ...+++.+|..+-+-..+-.. .......+.--+| T Consensus 384 d~~~kl~~~g~~~~s~~~~~~~l~~~~~e~~~~~~e~~e~~~~~~~~~~~~~~~~~~ 440 (441) T protein:vir:80 384 DAVTKLVGAGILPADSRTVLEMLGLDDVQVEAVMRHRAESSDPLAVLAGAISRQTNE 440 (441) T ss_pred HHHHHHHhcCcccccHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 9999999999754 445666665432111100000 0000000111111 No 192 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=96.54 E-value=0.00053 Score=38.55 Aligned_cols=375 Identities=8% Similarity=-0.026 Sum_probs=157.7 Q ss_pred Ccccchhcccccc----ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN----AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~~~ 74 (383) ..|++.....++. ......+..+ ..-.............+ +..+.....|+..++-+-.-|+.+.. ..... T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g~~~-il~~~~~~~~~~~~~~k--i~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~ 122 (511) T protein:vir:93 46 SKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTRRKEEYMADNR--VAHDYASYISDFINGYFLGNPIQYQDDDKDVLE 122 (511) T ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCc-cccccCcCcccccCcce--eecchHHHHHHHHhhhhcccCeeeccCChHHHH Confidence 1122211000000 0000000000 00000000000000000 12244555666666666666766532 22223 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceEE----EEEE-ecC---c Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIVY----TVLE-SND---R 140 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~----~~~~-~~~---~ 140 (383) .+.+-+..-........+......+|.||.++..+. ...-.++|..+..+.++. ...+ +... ..+ . T Consensus 123 ~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~ 202 (511) T protein:vir:93 123 VIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDED 202 (511) T ss_pred HHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccc Confidence 344333333556677788888999999999876542 234445555555443321 1111 1110 000 0 Q ss_pred ---eEEEEchhheEEecccCcc--------------c---------cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 141 ---PKMVLRQDQMLHFRLMPDP--------------Q---------YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 141 ---~~~~~~~~~vih~r~~~~~--------------~---------~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) ....+.++.+.+++.-... + .....|.|-++.+...++..+.+.....+.++.. T Consensus 203 ~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~ 282 (511) T protein:vir:93 203 EVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDL 282 (511) T ss_pred eEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh Confidence 0012333333333211000 0 0012477788888788876666665555666666 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC-cc-cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTG-DN-SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVP 272 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~n-~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp 272 (383) +.|-.+++-... .+.+.....++...-.... .. .+...-.+++.+++.++..... +.+....+...+.|+..-++| T Consensus 283 ~~~~lv~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~L~~~I~~~s~~P 360 (511) T protein:vir:93 283 NDAMLLIKGNLN-LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHMFTNTP 360 (511) T ss_pred hCcceeeecCcc-cCchhhcccccccceecccccccccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCc Confidence 666666553222 2222222211111000000 00 0111123445555555433222 233456677788899888998 Q ss_pred HHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCC------ceeeeechhhhccCHHHH Q lcl|Aclame:pro 273 SDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNA------PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 273 ~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~------~~~~fd~~~ll~~d~~~~ 335 (383) ..-.+.. +++.+.-.. ......|...|...++.+...++..-.. ..+++.+.+-+..|..+. T Consensus 361 ~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~ 439 (511) T protein:vir:93 361 NMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCCCCCCHHHH Confidence 6543321 122222111 0111122233333333333333322111 135666777778899999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCCCCCCCC------CCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLTNETKGG------DDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~~~~~gG------d~~ 383 (383) ++++.++ .|+++...+.++++.-+-+..++ ..........+++ +++ T Consensus 440 ~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (511) T protein:vir:93 440 LKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDD 502 (511) T ss_pred HHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCc Confidence 9999888 58999988888875432111111 0000000001111 111 No 193 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=96.46 E-value=0.00061 Score=38.23 Aligned_cols=355 Identities=9% Similarity=0.029 Sum_probs=143.5 Q ss_pred Ccccchhcccc-c--cccccccccchhhhh----hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc--h Q lcl|Aclame:pro 1 MGLLTPKNFSK-R--NAKNMVYPSNPAFFT----TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT--A 71 (383) Q Consensus 1 Mg~~~~~~~~~-~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~--~ 71 (383) ..+.+....+. + .......+.. .... ......... ..+..-+..+....+|+..++-+-+-|+.+... . T Consensus 32 ~~~i~~~~~~~~~~~~~~~yY~g~~-~i~~~~~~~~~~~~~~~-~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~d~ 109 (478) T protein:vir:10 32 LRLVREHKENIDNITMGERYYNHHP-DILDAPPKRDVNGDYDE-TKPDWRMYTNYHQNLVDQKVAYAVANPVTFGVDNDK 109 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-chhcccccccccccccc-ccccceeccchHHHHHHHHHhhhccCCeeeecCChH Confidence 11111000000 0 0000000000 0000 000000000 000001123445566777776666666654322 1 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eEE---EEEEecCceE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IVY---TVLESNDRPK 142 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~ 142 (383) ....+..-.. ....+....+......+|.+|+.+..+. ...-.++|..+..+.++. + ..+ ++...+.... T Consensus 110 ~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~~ 188 (478) T protein:vir:10 110 ALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAERV 188 (478) T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEE Confidence 2111111111 1345566667788889999998765432 223334444444432211 0 110 0000000001 Q ss_pred EEEchh---------------------------------------heEEecccCccccCccccCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 MVLRQD---------------------------------------QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKA 183 (383) Q Consensus 143 ~~~~~~---------------------------------------~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~ 183 (383) ..+.++ .|+|+++ ...|.|-++.+...++....+ T Consensus 189 ~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-------~~~g~sd~~~v~~liDa~~~~ 261 (478) T protein:vir:10 189 EYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKN-------NPQEVSDLFMYKTIIDALDKR 261 (478) T ss_pred EEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEecc-------CCCCCCcHHHHHHHHHHHHHH Confidence 111111 2334332 124778787777777766666 Q ss_pred HHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceec--cCCceeEecccChhHHHHHHHHHHHH Q lcl|Aclame:pro 184 SKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVL--PDGFDYTQLEMKTDVFKALADNSAYS 261 (383) Q Consensus 184 ~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl--~~g~~~~~l~~~~~~~~~l~e~~~~~ 261 (383) .....+.++..+.|..+++--+. ++ ........+ .++++.+ +.|.++..+...... ..+....+.. T Consensus 262 ~S~~~~~~~~~~~p~~~~~g~~~--~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l 329 (478) T protein:vir:10 262 LSDTQNTFDESVELIYILKGYEG--ED--MKDFMHNLK-------YYKAISVAGESGSGVDTIKVEVPI-DSVKEYTKML 329 (478) T ss_pred HHHHHHHHHHhhCceeeeecCCc--cc--cchhhhhhh-------hcceEEecCCCCCcceEEeecCCh-HHHHHHHHHH Confidence 66666666666666655443221 11 111111111 1223333 233343333322222 3345667777 Q ss_pred HHHHHHHhcCCHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCCceeeeechhh Q lcl|Aclame:pro 262 ADQISKAFGVPSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMNAPDLELDIKDM 327 (383) Q Consensus 262 ~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~l 327 (383) .+.|...-++|..-.+. .+++.++ ++.+. .|...|...++.+...+....-...+++.+.+- T Consensus 330 ~~~i~~~s~~p~~~~~~-~~~n~Sg---~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~~~~i~i~f~~~ 405 (478) T protein:vir:10 330 RDYIIEFGQGVDFQQDK-FGNSPSG---IALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVKVQDIEITFNFN 405 (478) T ss_pred HHHHHHHhCccccCccc-cccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEecCC Confidence 78888888887533221 1122221 22211 122222222222222221111112455666677 Q ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-------c---cccCCCC-------CCCCCCCC Q lcl|Aclame:pro 328 LDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-------P---EFKPLTN-------ETKGGDDK 383 (383) Q Consensus 328 l~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-------~---~~~~~~~-------~~~gGd~~ 383 (383) +..|..+.++++.++ .|+++...+.++++.-.-+..+. . ....... +.++.+++ T Consensus 406 ~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (478) T protein:vir:10 406 VMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEMERIEQENIELNQQLPDIEEGLNGEQQRQSENNQ 476 (478) T ss_pred CCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCCC Confidence 778999999998887 68999999998886432111110 0 0000000 01111111 No 194 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=96.45 E-value=0.00061 Score=38.19 Aligned_cols=356 Identities=6% Similarity=-0.015 Sum_probs=150.0 Q ss_pred Ccccchhcccc-cc--ccccccccchhhh---hhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--h Q lcl|Aclame:pro 1 MGLLTPKNFSK-RN--AKNMVYPSNPAFF---TTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--T 72 (383) Q Consensus 1 Mg~~~~~~~~~-~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--~ 72 (383) ..+.+....+. +- ......+..+-.. .....+.. ....+..-+..+....+|+..++-+-.-|+.+.... . T Consensus 50 ~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~-~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~ 128 (492) T protein:vir:97 50 VRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAV-DPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEV 128 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccc-cccccccccccchHHHHHHHHhhhhcccCceeccCchHH Confidence 11111100000 00 0000000000000 00000000 000000112234566677777777666666543221 2 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eEE---EEEEecCceEE Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IVY---TVLESNDRPKM 143 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~ 143 (383) ...+..-..+ ...+....+..+...+|.||.++..+. ...-.++|..+..+.++. + ..+ ++...+..... T Consensus 129 ~~~l~~~~~n-~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~ 207 (492) T protein:vir:97 129 VKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVE 207 (492) T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeEE Confidence 1222211111 233455567788889999998875532 233445555554433211 1 110 00011111111 Q ss_pred EEchhh-----------------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQ-----------------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNM 188 (383) Q Consensus 144 ~~~~~~-----------------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~ 188 (383) .+.... |+++++ ...|.|-++.....++..+.+..... T Consensus 208 ~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------n~~g~sd~e~v~~liDa~d~~~S~~~ 280 (492) T protein:vir:97 208 YWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-------NDLEISDIFMYKTLIDAYNRRLSDLS 280 (492) T ss_pred EEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-------CCCCCCchHhHHHHHHHHHHHHHHHH Confidence 111222 222221 12477888888888876666666666 Q ss_pred HHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 189 SAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKA 268 (383) Q Consensus 189 ~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~ 268 (383) +.+...+.|-.+++--.. +.......... ..+++.++.+.+.+.+...... ..+....+...+.|+.. T Consensus 281 ~~~~~~~~~~l~~~g~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~L~~~I~~~ 348 (492) T protein:vir:97 281 NTFKDSNELTYVLKNYDD----QELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPV-ENSKKYLDELYQKIMLF 348 (492) T ss_pred HHHHHhccceeeeecCCc----ccchhHHHHHh-------hccceecCCCCcceeEeccCCH-HHHHHHHHHHHHHHHHH Confidence 666666666655542221 11111222221 1234555555454444433222 22346677777888888 Q ss_pred hcCCHHHhccccccccchhHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHH Q lcl|Aclame:pro 269 FGVPSDILGGGTSTESQHSNIDQIK--------------ATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSI 334 (383) Q Consensus 269 fgVp~~~lg~~~~~~~~~~~~e~~~--------------~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~ 334 (383) -++|..-.+. .+++.+. ++.+ ..|...+...++.+...++.+--...+++.+.+-+..|..+ T Consensus 349 s~~p~~~~~~-~~~n~Sg---~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~~~~e 424 (492) T protein:vir:97 349 GQAVDFSSDK-FGSAPSG---VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTEL 424 (492) T ss_pred hCCCCCCccc-cccCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecCCCCCCHHH Confidence 8887533221 1122221 2221 12222333333333333322222235666677777789999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccccC-CCCCCCCCC----CC Q lcl|Aclame:pro 335 LINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEFKP-LTNETKGGD----DK 383 (383) Q Consensus 335 ~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~-~~~~~~gGd----~~ 383 (383) .++++.++ .|+++...+.++++.-.-+..++ +.... ..+..+.++ ++ T Consensus 425 ~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) T protein:vir:97 425 QVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) T ss_pred HHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCCCCcccccccccc Confidence 99999988 48899888888775422111111 00000 000000110 00 No 195 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=96.35 E-value=0.00071 Score=37.85 Aligned_cols=359 Identities=14% Similarity=0.055 Sum_probs=148.9 Q ss_pred Ccccchhcccccc-------ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee--cch Q lcl|Aclame:pro 1 MGLLTPKNFSKRN-------AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE--NTA 71 (383) Q Consensus 1 Mg~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~--~~~ 71 (383) ..++.++...-.. ......+.. ........ .......+ +..+.....|+..++-+-+-|+.+. +.. T Consensus 19 ~~~l~~~i~~~~~~~~r~~~~~~yy~g~~-~i~~~~~~--~~~~~~~k--i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~ 93 (453) T protein:vir:39 19 NEVVTKFMEKHRLEVARYEYLKNMYRGIM-AIDAEPTK--DLWKPDNR--LTVNFTKYIVDTFTGYFNGIPVKKSHSDKE 93 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-chhcCCCc--cccCccce--eecchHHHHHHHHhhhhcccCceeccCChH Confidence 1112221110000 000000000 00000000 00000001 1234556667777777666666543 222 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eEEEE-EE-ecCce-- Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IVYTV-LE-SNDRP-- 141 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~~~~-~~-~~~~~-- 141 (383) ....+.+....-........+....+.+|.||+++..+. ...-.++|..+....++. . ..+.. .. ..+.. T Consensus 94 ~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~ 173 (453) T protein:vir:39 94 TLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTNVIYNTPENMFMVYDDTIKQEPLFAVRYGYDDDYKLY 173 (453) T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEecCCCCCeEEEEEEEEEeCCeEEE Confidence 223333332223445567778888899999999876542 222333444433332211 0 10000 00 00000 Q ss_pred EEEEchh-------------------------heEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 142 KMVLRQD-------------------------QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 142 ~~~~~~~-------------------------~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) ...+.++ .|+++++ ...|.|-++.+...++..+.+.....+.++..+. T Consensus 174 ~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~ 246 (453) T protein:vir:39 174 GEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF-------NEERMSIFESVISLVNAFNKAISEKANDVDYFSD 246 (453) T ss_pred EEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC-------CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC Confidence 0011111 1333321 1247777877777776666555555555666666 Q ss_pred cceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHh Q lcl|Aclame:pro 197 PAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDIL 276 (383) Q Consensus 197 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~l 276 (383) |..+++-. ..+++..+.++.. ... ...+..-.+++.++..++..... +.+.+..+...+.|+..-++|..-. T Consensus 247 p~~~~~g~--~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~lt~~~~~-~~~~~~~~~l~~~I~~~s~~p~~~~ 318 (453) T protein:vir:39 247 QYLTFLGA--AVEEEDLKNIRSN--RVI---NYYGESSEAKNVDVKFLEKPDSD-SQTENLLDRLTKLIFQTTMVANISD 318 (453) T ss_pred ceeeeecC--CCCchhhhhhhhc--cee---eecCCCCCCCCCceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCccccc Confidence 76665532 2233333322211 000 00000111233333433332222 3345667777788888888874322 Q ss_pred ccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhc---CCceeeeechhhhccCHHHHHHHHHHH Q lcl|Aclame:pro 277 GGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKM---NAPDLELDIKDMLDVDDSILINQVSNL 342 (383) Q Consensus 277 g~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l---~~~~~~fd~~~ll~~d~~~~~~~~~~~ 342 (383) +. .++.+....+ .....|...|...++.+...++..- -...+++.+.+-+..|..+.++++.++ T Consensus 319 ~~--~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl 396 (453) T protein:vir:39 319 ES--FGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIKEQAETANIL 396 (453) T ss_pred cc--ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHH Confidence 11 1121211111 1111222333333333333222111 112456666777778999999999887 Q ss_pred HhCCCcCHHHHHHHhCCCCccCCcccc-----------ccCCCCCCCCCCCC Q lcl|Aclame:pro 343 AKSGVLGAEQAQFILTRSGFLPDNLPE-----------FKPLTNETKGGDDK 383 (383) Q Consensus 343 ~~~G~~t~nE~R~~~g~~p~~~~d~~~-----------~~~~~~~~~gGd~~ 383 (383) .|+++...+.++++.-+-+..++.+ ........+|.+++ T Consensus 397 --~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 446 (453) T protein:vir:39 397 --MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTV 446 (453) T ss_pred --hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC Confidence 5789998888887543211111100 01111122222222 No 196 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=96.29 E-value=0.00078 Score=37.62 Aligned_cols=363 Identities=8% Similarity=-0.002 Sum_probs=148.8 Q ss_pred Cccc-------------chhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEe Q lcl|Aclame:pro 1 MGLL-------------TPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKT 67 (383) Q Consensus 1 Mg~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v 67 (383) -.+. .+....+............................+..-+.++-....|+..++-+-+-|..+ T Consensus 11 ~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~ 90 (471) T protein:vir:10 11 SSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKKAYALTYPPTF 90 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhhhhhcccCcee Confidence 0000 000000000000000000000000000000000000001223345556666666665666554 Q ss_pred ecch--hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec----cceEEeecCcceeeeecCCc---eE----EEE Q lcl|Aclame:pro 68 ENTA--TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMG---IV----YTV 134 (383) Q Consensus 68 ~~~~--~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~----~~~ 134 (383) .... ....+..-.. .........+......+|.||.++..+ .+....++|..+..+.++.. .. ++. T Consensus 91 ~~~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~~~i~d~~~~~~~~~~ir~~~ 169 (471) T protein:vir:10 91 DVDDKKVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEVIPIYSKSLDKKSIGVLRVYS 169 (471) T ss_pred ccCChHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 3222 2222221111 123445556677888999999887553 23445556666554433221 11 111 Q ss_pred EE-ecCceE----EEEchhheEEecccCc-----------------------------ccc---------CccccCcHHH Q lcl|Aclame:pro 135 LE-SNDRPK----MVLRQDQMLHFRLMPD-----------------------------PQY---------RYLIGRSPLE 171 (383) Q Consensus 135 ~~-~~~~~~----~~~~~~~vih~r~~~~-----------------------------~~~---------~~~~G~spi~ 171 (383) .. ..++.. ..+..+.+.|++.... .++ ....|.|-++ T Consensus 170 ~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~~~sd~e 249 (471) T protein:vir:10 170 SIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNNEIETNDLK 249 (471) T ss_pred eeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeEEEeccCCCCCCchH Confidence 11 011111 1222333333321100 000 0123677777 Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceec-------cCCceeEec Q lcl|Aclame:pro 172 SLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVL-------PDGFDYTQL 244 (383) Q Consensus 172 ~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl-------~~g~~~~~l 244 (383) .....++..+.+.....+.+...+.|-.+++-.+....++. ...+.. ++++.+ +++++|... T Consensus 250 ~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~----~~~~~~-------~~~i~~~~~~~~~~~~~~~l~~ 318 (471) T protein:vir:10 250 PIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDKQEF----LEDLKR-------YKMIKMDNDGMGDQSGVTTIAI 318 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccchh----HHHhhc-------CCeEEecCCCCccCccceEEee Confidence 77777776665555555556666666555443222111111 111111 122222 123455444 Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHH-----------HHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 245 EMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ-----------IKATYLANLNSYVNPIVDELRL 313 (383) Q Consensus 245 ~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~-----------~~~~~~~tl~p~~~~i~~~l~~ 313 (383) +.+. +.+....+...+.|+..-++|..-... .++.++...+. ....|...+...++.+...++. T Consensus 319 ~~~~---~~~~~~~~~l~~~I~~~s~tp~~~~~~--~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 393 (471) T protein:vir:10 319 DIPT---EARNLILERTKKQIFISGQGVNPETDK--LGNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGL 393 (471) T ss_pred cCCh---HHHHHHHHHHHHHHHHHhCCcCCCccc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 4332 233466677778888888887542221 12222211110 1111112222222222222211 Q ss_pred hcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc-------cccccCCCCCCCCCCCC Q lcl|Aclame:pro 314 KMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN-------LPEFKPLTNETKGGDDK 383 (383) Q Consensus 314 ~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d-------~~~~~~~~~~~~gGd~~ 383 (383) .-...+++.+.+.+..|..+.++.+.++ .|+++...+.++++.-.-+..+ ............+++++ T Consensus 394 -~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~p~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~ 467 (471) T protein:vir:10 394 -SDKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSNPIVEDWQDELRLQKAEQEGRSEKLYDMEEVEHE 467 (471) T ss_pred -CCCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCc Confidence 1123567777788888999999999887 5899999998887432211111 11112222334444333 No 197 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=96.05 E-value=0.0011 Score=36.87 Aligned_cols=375 Identities=11% Similarity=0.034 Sum_probs=152.9 Q ss_pred Ccccchhcccccccc-------ccccc----------------cchhhhhhhccCccccccc-----------HHHHhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK-------NMVYP----------------SNPAFFTTTVGGMQLSYVS-----------ALSALQN 46 (383) Q Consensus 1 Mg~~~~~~~~~~~~~-------~~~~~----------------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 46 (383) |+.++-+|....... ....+ .......... +....... ...-+.. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~-g~~~~i~~~~~~~~~~~~~~~~ki~~ 84 (481) T protein:vir:10 6 INNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYL-NRNTDILAGERRLQKYGDKADHRAVH 84 (481) T ss_pred eehhchhcccccCceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccCccccccccccccceeec Confidence 666654433221110 00000 0000000010 10000000 0001234 Q ss_pred HHHHHHHHHHHHhhccceeEe--ecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcce Q lcl|Aclame:pro 47 TNVYSVINRIASDVSSAHFKT--ENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQI 121 (383) Q Consensus 47 ~~v~~~i~~ia~~ia~~~~~v--~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~ 121 (383) +....+|+..++-+-.-|..+ .+......+..-...-....+...+......+|.+|+.+..+. ...-..+|..+ T Consensus 85 n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~~i~~~~p~~~ 164 (481) T protein:vir:10 85 NYAKYVSRFIVGYLTGNPITITHQDNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDRDTFKVLDPKST 164 (481) T ss_pred chHHHHHHHHHhhhccCCceEecCChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeEEEEEEcccce Confidence 556667777777666666543 2333333333333333455677888888999999998775432 22233444444 Q ss_pred eeeecCCc---eE----EEEEEecCce----EEEEchhheEEecccC----------cc-c-------cCccccCcHHHH Q lcl|Aclame:pro 122 NYLPGNMG---IV----YTVLESNDRP----KMVLRQDQMLHFRLMP----------DP-Q-------YRYLIGRSPLES 172 (383) Q Consensus 122 ~~~~~~~~---~~----~~~~~~~~~~----~~~~~~~~vih~r~~~----------~~-~-------~~~~~G~spi~~ 172 (383) ..+.+... .. ++........ ...+.++.+.|++.-. ++ + .....|.|-++. T Consensus 165 ~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~ 244 (481) T protein:vir:10 165 FVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFEN 244 (481) T ss_pred EEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhh Confidence 33322211 10 1111111000 0122222222221100 00 0 001247777776 Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHH Q lcl|Aclame:pro 173 LQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFK 252 (383) Q Consensus 173 ~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~ 252 (383) +...++..........+.++..+.|..++.-.. ..+++....++..-. ....... .....+++.++..+...... + T Consensus 245 v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~ 320 (481) T protein:vir:10 245 VIALIDLYDSAQSDTANYMTDLNDAMLAIIGNV-DLDSEDAKAFRDANM-IHLEPGT-NANGSEGKAEVKYVYKQYDV-A 320 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceeEeecCc-CCCccchhhhhhccc-eeccccc-cccCCCCCcceeEEeecCCH-H Confidence 666666555444444444555555666554221 223233222222100 0000000 01111223343333332222 3 Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhcCC---- Q lcl|Aclame:pro 253 ALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI-----------KATYLANLNSYVNPIVDELRLKMNA---- 317 (383) Q Consensus 253 ~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~-----------~~~~~~tl~p~~~~i~~~l~~~l~~---- 317 (383) .+.+..+...+.|+..-++|....+.. +++.+....+.. ...|...+.-.++.+...++..-.. T Consensus 321 ~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~ 399 (481) T protein:vir:10 321 GVEAYKKRLQNDIHKYTNTPDLNDEQF-SGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNY 399 (481) T ss_pred HHHHHHHHHHHHHHHHhCCcccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc Confidence 345677778888999999987655432 222222111110 0111111222222222222211111 Q ss_pred ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc----------------ccccCCC-CCCCCC Q lcl|Aclame:pro 318 PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL----------------PEFKPLT-NETKGG 380 (383) Q Consensus 318 ~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~----------------~~~~~~~-~~~~gG 380 (383) ..+++.+.+-+..|..+.++++.++. |+++...+.++++.-.-+..++ ....... +..... T Consensus 400 ~~i~v~f~~~~~~~~~~~a~~~~kl~--g~is~et~~~~l~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~d 477 (481) T protein:vir:10 400 AELTITFTPNLPKSMMESINAFNALS--GGVSESTRLSLLDFIDNPKEELEKMQEEEAQREKQADKRGYGEAFENHLNVD 477 (481) T ss_pred ceeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhhccCCccCCCCCCCC Confidence 24566677777889999999998884 7899888887775421111110 0000000 111111 Q ss_pred CCC Q lcl|Aclame:pro 381 DDK 383 (383) Q Consensus 381 d~~ 383 (383) |.| T Consensus 478 d~~ 480 (481) T protein:vir:10 478 DSN 480 (481) T ss_pred CCC Confidence 222 No 198 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=95.87 E-value=0.0013 Score=36.35 Aligned_cols=374 Identities=10% Similarity=0.013 Sum_probs=160.7 Q ss_pred Ccccchhccc--------------cccc-----cccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGLLTPKNFS--------------KRNA-----KNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVS 61 (383) Q Consensus 1 Mg~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia 61 (383) |..+..+... ++.+ .....+........ ...........-+........|+..++-+- T Consensus 31 ~~~~~~~~~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i~~~---~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~ 107 (502) T protein:vir:48 31 ADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKS---GRRKDNEMADKRAVHNYGRMISKFKTGYLA 107 (502) T ss_pred ccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc---ccccccccccceeecchHHHHHHHHhhhhc Confidence 2222111000 0000 00000000000000 000000000001223455667777777777 Q ss_pred cceeEeecch------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecC---Cc Q lcl|Aclame:pro 62 SAHFKTENTA------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGN---MG 129 (383) Q Consensus 62 ~~~~~v~~~~------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~---~~ 129 (383) .-|+.+.... ....+.+.+..-........+..++..+|.||+++..+. ...-.++|..+..+.++ .. T Consensus 108 g~p~~~~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~vydd~~~~~ 187 (502) T protein:vir:48 108 GNPIRVEYDDNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDN 187 (502) T ss_pred ccCeeEecCCccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCc Confidence 7777654321 222333433333556677888889999999998875532 22333444444333221 11 Q ss_pred eE----EEEEEec-Cce--EEEEchhheEEecccC--------ccc---------cCccccCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 IV----YTVLESN-DRP--KMVLRQDQMLHFRLMP--------DPQ---------YRYLIGRSPLESLQNALNLDDKASK 185 (383) Q Consensus 130 ~~----~~~~~~~-~~~--~~~~~~~~vih~r~~~--------~~~---------~~~~~G~spi~~~~~~i~~~~~~~~ 185 (383) .. ++..... +.. ...+..+.++++..-. +.. .....|.|.++.+...++....+.. T Consensus 188 ~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S 267 (502) T protein:vir:48 188 SIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAES 267 (502) T ss_pred eEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHH Confidence 11 1111111 110 0122222222211100 000 0012578888888888887777777 Q ss_pred HHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 186 SNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQI 265 (383) Q Consensus 186 ~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~I 265 (383) ...+.++..+.|-.+++-.....+++....+++... .... ..+..-..+++.+++.++..... +......+...+.| T Consensus 268 ~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~~~L~~~I 344 (502) T protein:vir:48 268 DTANHMSDMADAILAIYGDLALPQGMQASDMKRTRL-MQLK-PPKSADGKEGTVKAEYLTKSYDV-SGAEAYKTRLNKDI 344 (502) T ss_pred HHHHHHHHhcCceeeeecCcccccccchhhhhhcce-eecc-ccccccccccCcceeEeeecCCH-HHHHHHHHHHHHHH Confidence 777777777777666654332222222222221110 0000 00001112334455444433222 33455677788899 Q ss_pred HHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC-----Cceeeeechhhhc Q lcl|Aclame:pro 266 SKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN-----APDLELDIKDMLD 329 (383) Q Consensus 266 a~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~-----~~~~~fd~~~ll~ 329 (383) +..-++|+.-.+.. .++.+....+ .....|...|...++.+...++..-. ...+++.+.+.+. T Consensus 345 ~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p 423 (502) T protein:vir:48 345 HVFTNTPDMSDNHF-SGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLP 423 (502) T ss_pred HHHhCCCCcCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCC Confidence 99999987544322 1222221111 01112222333333333333332211 1135666777788 Q ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccc------------c-CCCCCC-CCCCCC Q lcl|Aclame:pro 330 VDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF------------K-PLTNET-KGGDDK 383 (383) Q Consensus 330 ~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~------------~-~~~~~~-~gGd~~ 383 (383) .|..+.++++.++ .|+++...+.++++.-.-+..++-+. . ...... .|+|++ T Consensus 424 ~d~~e~a~~~~kl--~g~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~ 489 (502) T protein:vir:48 424 KSLYEQVSILNDL--GGQVSQETALSLSGLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEV 489 (502) T ss_pred cCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCc Confidence 8999999999988 47899988888875422111111000 0 000011 122222 No 199 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=95.76 E-value=0.0015 Score=36.07 Aligned_cols=367 Identities=11% Similarity=0.025 Sum_probs=155.8 Q ss_pred Cc---ccchhccc---ccccc-----ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec Q lcl|Aclame:pro 1 MG---LLTPKNFS---KRNAK-----NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN 69 (383) Q Consensus 1 Mg---~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~ 69 (383) +. ++.++... ++.++ ....+.....+.. .... ....+..-+..+....+|+..++-+-.-|+.+.. T Consensus 38 ~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~--~~~~-~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~ 114 (501) T protein:vir:96 38 VNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKS--GRRK-DNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEY 114 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCc--cccC-ccccccceeecchHHHHHHHHhhhhcccCeeEee Confidence 11 12221100 00000 0000000000000 0000 0000011123455666777777766666766532 Q ss_pred c------hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-eE----EE Q lcl|Aclame:pro 70 T------ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-IV----YT 133 (383) Q Consensus 70 ~------~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-~~----~~ 133 (383) . ....++.+....-........+..+...+|.||+++..+. .....++|..+..+.++. + .. ++ T Consensus 115 ~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~v~d~~~~~~~~~~v~~~ 194 (501) T protein:vir:96 115 DDNDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVRYY 194 (501) T ss_pred CCccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEccceeEEEEcCCCCCceEEEEEEE Confidence 2 1223344444444566677888889999999999875532 223334454444433221 1 11 11 Q ss_pred EEEec-Cce--EEEEchhh------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 VLESN-DRP--KMVLRQDQ------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKS 186 (383) Q Consensus 134 ~~~~~-~~~--~~~~~~~~------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~ 186 (383) ..... +.. ...+.++. |++++. ...|.|.++.+...++....+... T Consensus 195 ~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------n~~g~sd~e~v~~liDa~d~~~s~ 267 (501) T protein:vir:96 195 NRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLN-------NIDGIGDYETELYLIDLYDSAESD 267 (501) T ss_pred EeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecC-------CccCCCchhhhHHHHHHHHHHHHH Confidence 11000 110 01112222 233321 125788888888888777666666 Q ss_pred HHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 187 NMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQIS 266 (383) Q Consensus 187 ~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia 266 (383) ..+.+...+.|..++.-.....+++....++....-.. ...+.......+.++..+...... ..+....+..++.|+ T Consensus 268 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~ 344 (501) T protein:vir:96 268 TANHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQL--KPPKSADGKEGTVKAEYLTKSYDV-SGAEAYKTRLNRDIH 344 (501) T ss_pred HHHHHHHhcCceeeeecccccCcccchhhhhhcCeeee--cccccccccccCcceeeEeccCCH-HHHHHHHHHHHHHHH Confidence 66666666666666553322222222222211000000 011111122333444433332222 223456677778888 Q ss_pred HHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC-----ceeeeechhhhcc Q lcl|Aclame:pro 267 KAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNA-----PDLELDIKDMLDV 330 (383) Q Consensus 267 ~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~-----~~~~fd~~~ll~~ 330 (383) ..-++|..-.+.. +++.+....+ .....|...|...++.+...++..-.+ ..+++.+.+.+.. T Consensus 345 ~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~ 423 (501) T protein:vir:96 345 IFTNTPDMSDTNF-SGNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPK 423 (501) T ss_pred HHhCCcccCcccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCCCc Confidence 8888986544322 1222221111 011122223333333333333221111 1356666777888 Q ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccc------------cccCCCCCC----------CCCCCC Q lcl|Aclame:pro 331 DDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLP------------EFKPLTNET----------KGGDDK 383 (383) Q Consensus 331 d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~------------~~~~~~~~~----------~gGd~~ 383 (383) |..+.++++.++. |+++..-+.++++.-.-|..++- ......++. +..||+ T Consensus 424 n~~e~ad~~~kl~--g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~ 496 (501) T protein:vir:96 424 SLNEQVSILTGLG--GQVSQETALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHTDDF 496 (501) T ss_pred CHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCCCcc Confidence 9999999999885 78888777776643210001100 000000000 111111 No 200 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=95.69 E-value=0.0016 Score=35.88 Aligned_cols=375 Identities=8% Similarity=-0.011 Sum_probs=155.6 Q ss_pred Ccccchhccccc--c--ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc--hhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKR--N--AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT--ATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~--~~~~ 74 (383) ..+++......+ - ......+ .....-............ .-+........|+..++-+-+-|+.+... .... T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g-~~~i~~~~~~~~~~~~~~--~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~ 122 (511) T protein:vir:10 46 SKCIEHHMDYQRPRLKVLSDYYEG-KTKNLVELTRRKEEYMAD--NRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLE 122 (511) T ss_pred HHHHHHHHHhhHHHHHHHHHHhcc-cCccccccCcccccccCc--ceeecchHHHHHHHHhhhhcccCceeecCchHHHH Confidence 122211100000 0 0000000 000000000000000000 01122445556666666666667665422 2223 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE----EEEEE-ecC---- Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV----YTVLE-SND---- 139 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~----~~~~~-~~~---- 139 (383) .+.+-+..-........+..++..+|.||.++..+. ...-.++|..+..+.++. ... |+... .++ T Consensus 123 ~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~ 202 (511) T protein:vir:10 123 AIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDED 202 (511) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccc Confidence 333333223445566777888899999999876532 334444555554433221 111 11100 000 Q ss_pred -ce-EEEEchhheEEecccCc--------------------c--c-cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 140 -RP-KMVLRQDQMLHFRLMPD--------------------P--Q-YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 140 -~~-~~~~~~~~vih~r~~~~--------------------~--~-~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) .. ...+.++.+.+++.... | . .....|.|-++-+...++..+.+.....+.+... T Consensus 203 ~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~ 282 (511) T protein:vir:10 203 EVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDL 282 (511) T ss_pred eEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 00 01223333333211000 0 0 0012477788877788876665555555666666 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC-cc-cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTG-DN-SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVP 272 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~n-~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp 272 (383) +.|-.+++-... .+.++....++...-.... .. .+...-.++|.+++.++..... ..+....+...+.|+..-++| T Consensus 283 ~~~~lv~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~e~~~~~L~~~I~~~s~~P 360 (511) T protein:vir:10 283 NDAMLLIKGNLN-LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHMFTNTP 360 (511) T ss_pred hCceeeeecccc-CCchhhccchhccceecccccccccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCc Confidence 666666553222 2223322222111100000 00 0111123445555555533222 333466777778888888887 Q ss_pred HHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCC------ceeeeechhhhccCHHHH Q lcl|Aclame:pro 273 SDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNA------PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 273 ~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~------~~~~fd~~~ll~~d~~~~ 335 (383) ..-.+.. +++.+.-.. ......|...|.-.++.+...+...-.. ..+++.+.+-+..|..+. T Consensus 361 ~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~ 439 (511) T protein:vir:10 361 NMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCHHHH Confidence 6433221 122222111 0111122223333333333333322111 146777788888899999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccc----cCCCCCCCCC--CCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEF----KPLTNETKGG--DDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~----~~~~~~~~gG--d~~ 383 (383) ++.+.++. |+++...+.++++.-.-+..++ ... ........++ |++ T Consensus 440 ~~~~~kl~--G~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (511) T protein:vir:10 440 LKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDD 502 (511) T ss_pred HHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCc Confidence 99999984 8899988888775322111110 000 0000111111 000 No 201 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=95.49 E-value=0.002 Score=35.41 Aligned_cols=371 Identities=9% Similarity=-0.008 Sum_probs=155.6 Q ss_pred Ccccchhccc--c-------ccccc-----cccccc--h---hhhhhhccCccccc--cc------HHHHhhhHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFS--K-------RNAKN-----MVYPSN--P---AFFTTTVGGMQLSY--VS------ALSALQNTNVYSVI 53 (383) Q Consensus 1 Mg~~~~~~~~--~-------~~~~~-----~~~~~~--~---~~~~~~~~~~~~~~--~~------~~~~~~~~~v~~~i 53 (383) ||++.++..- + ++.+. .+.... - .-|-.+..+..... .+ .+..+.......+. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~ 80 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHHH Confidence 9999875221 1 01110 111110 0 01112222222111 00 00111122223333 Q ss_pred HHHHHhhccc--eeEeecch-----------hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc----ceE--- Q lcl|Aclame:pro 54 NRIASDVSSA--HFKTENTA-----------TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEH--- 113 (383) Q Consensus 54 ~~ia~~ia~~--~~~v~~~~-----------~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~----~~~--- 113 (383) +.+|+-+-.- .+.+.+.. ....+.+-=..-.........+...+..|.+++.+..+. +.. T Consensus 81 ~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~I~~v~a 160 (517) T protein:vir:98 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIEFSWALA 160 (517) T ss_pred HHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCeeEEEEEcC Confidence 3344333221 22222211 011111100111122233334555566788887664422 222 Q ss_pred ---EeecCcc-----e-----ee-eecCCceEEEEEEec---------CceE---------------EEEc--------h Q lcl|Aclame:pro 114 ---IPNSDVQ-----I-----NY-LPGNMGIVYTVLESN---------DRPK---------------MVLR--------Q 147 (383) Q Consensus 114 ---~~~~~~~-----~-----~~-~~~~~~~~~~~~~~~---------~~~~---------------~~~~--------~ 147 (383) +|+.... + .. ..+....+|...... +... ..++ + T Consensus 161 d~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l~ 240 (517) T protein:vir:98 161 NAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQ 240 (517) T ss_pred CeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccccccCCC Confidence 2211100 0 00 011111122111100 0000 0010 0 Q ss_pred hh----------eEEecccCccc--cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCC--CHHHH Q lcl|Aclame:pro 148 DQ----------MLHFRLMPDPQ--YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLS--DGKDL 213 (383) Q Consensus 148 ~~----------vih~r~~~~~~--~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~--~~~~~ 213 (383) ++ +.|++....+. .....|.|...-+...+...+........-++-|-+ +.++ +..+. +++.- T Consensus 241 ~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~-~i~v--p~~~l~~~~~~~ 317 (517) T protein:vir:98 241 EKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR-TVFV--SDVMLRTVPDES 317 (517) T ss_pred cceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCc-ceec--ChhhhccccCCC Confidence 11 12555322221 122469999998888887766666666666666543 3222 22111 00000 Q ss_pred -HHHHHHHH---HHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHH Q lcl|Aclame:pro 214 -ESAREEFE---KANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI 289 (383) Q Consensus 214 -~~~~~~~~---~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~ 289 (383) ......|. ..+.+.+ .-.++-.++.++..-...+. .+..+...+.|+...|+++..+|....+..+.... T Consensus 318 g~~~~~~~d~~~~~y~~~~-----~~~~~~~i~~~~~~iR~e~~-~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi 391 (517) T protein:vir:98 318 GMPPPQVFDPDVNVYKSIR-----MGTDEEFVKDVTHDIRTEQY-KEAINQALRTLEMELKLSVGTFSFDGRSMKTATEI 391 (517) T ss_pred CcccCCCCCcccceeeecc-----CCCCCCceeeeccccchHHH-HHHHHHHHHHHHHHhCCCcccccccccccccHHHH Confidence 00000000 0111100 00122335555555555454 57888889999999999999999765554433222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------------cC------CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHH Q lcl|Aclame:pro 290 DQIKATYLANLNSYVNPIVDELRLK------------MN------APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAE 351 (383) Q Consensus 290 e~~~~~~~~tl~p~~~~i~~~l~~~------------l~------~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~n 351 (383) ....+....|+.-+.+.++..|... ++ ...+.+++++-+..|.++.++...+++.+|+|++- T Consensus 392 ~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~~ 471 (517) T protein:vir:98 392 VSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV 471 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHH Confidence 2222222234444444444333321 12 13578889898889999999999999999999999 Q ss_pred HHHHHh-CCCCccCCc----cccccCC---------CCC---CCCCCCC Q lcl|Aclame:pro 352 QAQFIL-TRSGFLPDN----LPEFKPL---------TNE---TKGGDDK 383 (383) Q Consensus 352 E~R~~~-g~~p~~~~d----~~~~~~~---------~~~---~~gGd~~ 383 (383) +++..+ |.. .++ +++.... ..+ --.||+| T Consensus 472 ~~i~~~~g~~---eeeA~~e~~~i~~E~~~~~~~~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 472 EAIQRIFKVP---KKTAEQWLEEIRKDQIELDPVTISQRAQKRMFGDEE 517 (517) T ss_pred HHHHHhCCCC---hHHHHHHHHHHHHhccccCCCCccccccCCCCCCCC Confidence 986654 432 111 0111100 011 1144555 No 202 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=95.49 E-value=0.002 Score=35.41 Aligned_cols=375 Identities=9% Similarity=0.006 Sum_probs=151.9 Q ss_pred Ccccchhcccccc----ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN----AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~~~ 74 (383) ..++++.....+. ......+..+ ............... .-+........|+..++-+-+-|..+.. ..... T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g~~~-il~~~~~~~~~~~~~--~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~ 122 (511) T protein:vir:96 46 SKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTRRKEEYMAD--NRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLE 122 (511) T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccCc-cccccCcccccccCc--ceeecchHHHHHHHHhhhhcccCceeecCchHHHH Confidence 1122111000000 0000000000 000000000000000 0112244555666666666666665432 22223 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE----EEEEEe-cCc--- Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV----YTVLES-NDR--- 140 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~----~~~~~~-~~~--- 140 (383) .+.+-+..-....+...+......+|.||.++..+. ...-.++|..+.++.++. ... |+.... .+. T Consensus 123 ~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~ 202 (511) T protein:vir:96 123 AIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDED 202 (511) T ss_pred HHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccc Confidence 333333333445566778888899999999876532 334445555555443321 111 111100 000 Q ss_pred ---eEEEEchhheEEecccCc--------------------c--c-cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 141 ---PKMVLRQDQMLHFRLMPD--------------------P--Q-YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 141 ---~~~~~~~~~vih~r~~~~--------------------~--~-~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) ....+.++.+.+++.-.. | . .....|.|-++-+...++..+.+.....+.++.. T Consensus 203 ~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~ 282 (511) T protein:vir:96 203 EVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDL 282 (511) T ss_pred eEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 011233333433321000 0 0 0012477778877777776665555555555655 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhc-Ccc-cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANT-GDN-SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVP 272 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~n-~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp 272 (383) +.|-.+++-.... +.++.+...+...-... +.. .+...-.+++.+++.++..... ..+....+...+.|+..-++| T Consensus 283 ~~~~lv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~e~~~~~L~~~I~~~s~~P 360 (511) T protein:vir:96 283 NDAMLLIKGNLNL-DPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHMFTNTP 360 (511) T ss_pred hcchhheecCccC-CchhhcccccccceeccccceeccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCc Confidence 5566555432222 22222221111000000 000 0000011223344434332222 233456677788899999998 Q ss_pred HHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC--C----ceeeeechhhhccCHHHH Q lcl|Aclame:pro 273 SDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN--A----PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 273 ~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~--~----~~~~fd~~~ll~~d~~~~ 335 (383) ..-.+.. +++.+..... .....|...|...++.+...+...-. . ..+++.+.+-+..|..+. T Consensus 361 ~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~ 439 (511) T protein:vir:96 361 NMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHH Confidence 6544322 1222221110 11112222333333333333322111 1 135677777778899999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCCCCCCCC--CCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLTNETKGG--DDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~~~~~gG--d~~ 383 (383) ++.+.++. |+++...+.++++.-+-+..++ ..........+++ +++ T Consensus 440 ~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:96 440 LKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDE 498 (511) T ss_pred HHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC Confidence 99999885 8899988887764322111111 0000011111111 111 No 203 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=95.49 E-value=0.002 Score=35.41 Aligned_cols=375 Identities=9% Similarity=0.006 Sum_probs=151.9 Q ss_pred Ccccchhcccccc----ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN----AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~~~ 74 (383) ..++++.....+. ......+..+ ............... .-+........|+..++-+-+-|..+.. ..... T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g~~~-il~~~~~~~~~~~~~--~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~ 122 (511) T protein:vir:78 46 SKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTRRKEEYMAD--NRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLE 122 (511) T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccCc-cccccCcccccccCc--ceeecchHHHHHHHHhhhhcccCceeecCchHHHH Confidence 1122111000000 0000000000 000000000000000 0112244555666666666666665432 22223 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE----EEEEEe-cCc--- Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV----YTVLES-NDR--- 140 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~----~~~~~~-~~~--- 140 (383) .+.+-+..-....+...+......+|.||.++..+. ...-.++|..+.++.++. ... |+.... .+. T Consensus 123 ~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~ 202 (511) T protein:vir:78 123 AIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDED 202 (511) T ss_pred HHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccc Confidence 333333333445566778888899999999876532 334445555555443321 111 111100 000 Q ss_pred ---eEEEEchhheEEecccCc--------------------c--c-cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 141 ---PKMVLRQDQMLHFRLMPD--------------------P--Q-YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 141 ---~~~~~~~~~vih~r~~~~--------------------~--~-~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) ....+.++.+.+++.-.. | . .....|.|-++-+...++..+.+.....+.++.. T Consensus 203 ~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~ 282 (511) T protein:vir:78 203 EVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDL 282 (511) T ss_pred eEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 011233333433321000 0 0 0012477778877777776665555555555655 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhc-Ccc-cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANT-GDN-SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVP 272 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~n-~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp 272 (383) +.|-.+++-.... +.++.+...+...-... +.. .+...-.+++.+++.++..... ..+....+...+.|+..-++| T Consensus 283 ~~~~lv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~e~~~~~L~~~I~~~s~~P 360 (511) T protein:vir:78 283 NDAMLLIKGNLNL-DPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHMFTNTP 360 (511) T ss_pred hcchhheecCccC-CchhhcccccccceeccccceeccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCc Confidence 5566555432222 22222221111000000 000 0000011223344434332222 233456677788899999998 Q ss_pred HHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC--C----ceeeeechhhhccCHHHH Q lcl|Aclame:pro 273 SDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN--A----PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 273 ~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~--~----~~~~fd~~~ll~~d~~~~ 335 (383) ..-.+.. +++.+..... .....|...|...++.+...+...-. . ..+++.+.+-+..|..+. T Consensus 361 ~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~ 439 (511) T protein:vir:78 361 NMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHH Confidence 6544322 1222221110 11112222333333333333322111 1 135677777778899999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCCCCCCCC--CCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLTNETKGG--DDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~~~~~gG--d~~ 383 (383) ++.+.++. |+++...+.++++.-+-+..++ ..........+++ +++ T Consensus 440 ~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:78 440 LKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDE 498 (511) T ss_pred HHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC Confidence 99999885 8899988887764322111111 0000011111111 111 No 204 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=95.37 E-value=0.0022 Score=35.16 Aligned_cols=356 Identities=9% Similarity=-0.001 Sum_probs=145.7 Q ss_pred Ccccchhccc--cc-----cccccccccchhhhh--hhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc- Q lcl|Aclame:pro 1 MGLLTPKNFS--KR-----NAKNMVYPSNPAFFT--TTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT- 70 (383) Q Consensus 1 Mg~~~~~~~~--~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~- 70 (383) =.++.++... .+ .......+..+-... ............+..-+..+....+|+..++-+-.-|..+... T Consensus 28 ~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d 107 (474) T protein:vir:96 28 EEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFSSDD 107 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCceeecCc Confidence 0011110000 00 000000000000000 0000000000000011223455666676666665666554322 Q ss_pred -hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec---cceEEeecCcceeeeecCC---ceE---EEEEEecCc Q lcl|Aclame:pro 71 -ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ---NLEHIPNSDVQINYLPGNM---GIV---YTVLESNDR 140 (383) Q Consensus 71 -~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~ 140 (383) .....+..-..+ ........+......+|.+|+.+..+ ......++|..+.++.++. ... +++...+.. T Consensus 108 ~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~vr~~~~~~~~ 186 (474) T protein:vir:96 108 DKSLKTIQEVLNH-KWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVPAEQAIPIWTNKERDTLKAFIRYYRLDGAE 186 (474) T ss_pred hHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCce Confidence 111111111111 23344455667788899999876543 2334455555555443221 111 011111011 Q ss_pred eEEEEchhh---------------------------------------eEEecccCccccCccccCcHHHHHHHHHHHHH Q lcl|Aclame:pro 141 PKMVLRQDQ---------------------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDD 181 (383) Q Consensus 141 ~~~~~~~~~---------------------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~ 181 (383) ....+..+. |+|+++ ...|.|-++.....++..+ T Consensus 187 ~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-------n~~g~sd~e~v~~liDa~d 259 (474) T protein:vir:96 187 RVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN-------NPQEMSDLFMYKTIIDAMD 259 (474) T ss_pred EEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc-------CCCCCCcHHHHHHHHHHHH Confidence 111111122 233331 1247777877777777766 Q ss_pred HHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-CCceeEecccChhHHHHHHHHHHH Q lcl|Aclame:pro 182 KASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-DGFDYTQLEMKTDVFKALADNSAY 260 (383) Q Consensus 182 ~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-~g~~~~~l~~~~~~~~~l~e~~~~ 260 (383) .+.....+.++..+.|-.+++--+. . ..+.+...+ ..++++.++ .|.+++.++..... +...+..+. T Consensus 260 ~~~S~~~~~~~~~~~~~lv~~g~~~--~--~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 327 (474) T protein:vir:96 260 KRLSDTQNTFDESTELIYILKGYEG--Q--DLDEFMRNL-------KYYKAINVDGDGSGVDTIQIEVPV-QSSKEYLDM 327 (474) T ss_pred HHHHHHHHHHHHhccceeeeecCCc--c--cccchhhhh-------hcCceEEecCCCCceeEEeecCCh-HHHHHHHHH Confidence 6666666666777767665543221 1 111111111 123456554 45565555544322 334567788 Q ss_pred HHHHHHHHhcCCHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCCceeeeechh Q lcl|Aclame:pro 261 SADQISKAFGVPSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMNAPDLELDIKD 326 (383) Q Consensus 261 ~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ 326 (383) ..+.|+..-++|..-.+. .+++.++ .+.+. .|...|...++.|...+....-...+.+.+++ T Consensus 328 l~~~i~~~s~~p~~~~~~-~~~n~Sg---~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~i~f~~ 403 (474) T protein:vir:96 328 LRDYVIEFGQGVDFQQDK-FGNSPSG---IALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVEITFNF 403 (474) T ss_pred HHHHHHHHhCCccccccc-cccccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecc Confidence 889999999998643221 1222222 22221 11122222222222222111112245555566 Q ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc--------------cccccCCCCCCCCCCCC Q lcl|Aclame:pro 327 MLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN--------------LPEFKPLTNETKGGDDK 383 (383) Q Consensus 327 ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d--------------~~~~~~~~~~~~gGd~~ 383 (383) -+..|..+.++. +..+|+++...++++++.-.-+..+ .+....+.+...+.|+| T Consensus 404 ~~p~~~~e~~~~---~~~ag~iS~et~~~~~~~v~d~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~d~~~ 471 (474) T protein:vir:96 404 NVMVNELEQSQI---GVQSQYLSKETVVTNHPWVDDPVAELERIEQDNIDFNKQLPPLEGDANGRAQDNES 471 (474) T ss_pred CCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCcc Confidence 566676666554 4568999999999887532111111 01111111111122222 No 205 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=95.23 E-value=0.0025 Score=34.86 Aligned_cols=358 Identities=9% Similarity=0.014 Sum_probs=145.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--hhhhhhC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--TLNRLES 78 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--~~~l~~~ 78 (383) +--+.+....+...... . ......+...... +..-+..+.....|+..++-+-+-|+.+.... ....+.. T Consensus 46 ~~~l~~Yy~g~~~i~~~-----~-~~~~~~~~~~~~~--~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~ 117 (474) T protein:vir:96 46 INVGQKYYDKDNDINYQ-----A-YKQDLHGNIDYTK--PDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQ 117 (474) T ss_pred HHHHHHHhcccCccccc-----c-chhhhcccccccc--cccccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHH Confidence 10000000000000000 0 0000000000000 00011223455566666776666676653222 1122211 Q ss_pred CCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--ce-EE--EEEEecCc-eEEEEchhh Q lcl|Aclame:pro 79 PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--GI-VY--TVLESNDR-PKMVLRQDQ 149 (383) Q Consensus 79 PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~-~~~~~~~~~ 149 (383) -.. -........+..+...+|.||.++..+. .....++|..+.++.++. +. .+ ++....+. ....+..+. T Consensus 118 ~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~ 196 (474) T protein:vir:96 118 VLD-TRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAET 196 (474) T ss_pred HHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCe Confidence 111 1345556667888899999999865532 334445555555443221 11 00 00011111 111122222 Q ss_pred eEEecccCc-------------------cc---------cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE Q lcl|Aclame:pro 150 MLHFRLMPD-------------------PQ---------YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKL 201 (383) Q Consensus 150 vih~r~~~~-------------------~~---------~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~ 201 (383) +.++..-.. .+ .....|.|-++.....++..+.+.....+.++..+.|-.++ T Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~ 276 (474) T protein:vir:96 197 VTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYIL 276 (474) T ss_pred EEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh Confidence 222211000 00 00124677777777777766655555555556666665554 Q ss_pred EEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 202 TISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTS 281 (383) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~ 281 (383) + +... +..+.....+ +..+++.++++.+++.++..... ..+....+...+.|+..-++|..-... .+ T Consensus 277 ~--g~~~--~~~~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~ 343 (474) T protein:vir:96 277 R--GYEG--EDLSEFMEGL-------KYYKAINVSSDGGVETIQVEVPV-ASTKEYLDMMRAYIVEFGQGVDFQTDK-FG 343 (474) T ss_pred c--CCCc--ccccchhhhh-------hccceeeccCCCceeEEeccCCH-HHHHHHHHHHHHHHHHHhCCcCccccc-cc Confidence 3 3211 1111111111 12345556655555555433333 234566777788899999987543221 11 Q ss_pred cccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 282 TESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGA 350 (383) Q Consensus 282 ~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~ 350 (383) ++.+.-... .....|...|...++.+...++...-...+++.+++-+..|..+.++.+ .++|+++. T Consensus 344 ~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~ 420 (474) T protein:vir:96 344 SATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQIG---AQSQYLSK 420 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHHH---HHcCCCCh Confidence 222211110 0111222233333333333222222223456666666666776666654 45799999 Q ss_pred HHHHHHhCCCCccCCcccc-------ccCCC-----------CCCCCCC-CC Q lcl|Aclame:pro 351 EQAQFILTRSGFLPDNLPE-------FKPLT-----------NETKGGD-DK 383 (383) Q Consensus 351 nE~R~~~g~~p~~~~d~~~-------~~~~~-----------~~~~gGd-~~ 383 (383) ..++++++.-.-+..++-+ ..... .+..++| +| T Consensus 421 et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 472 (474) T protein:vir:96 421 ETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQ 472 (474) T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccc Confidence 9988887542211111100 00000 0111111 11 No 206 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=95.23 E-value=0.0025 Score=34.86 Aligned_cols=358 Identities=9% Similarity=0.014 Sum_probs=145.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--hhhhhhC Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--TLNRLES 78 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--~~~l~~~ 78 (383) +--+.+....+...... . ......+...... +..-+..+.....|+..++-+-+-|+.+.... ....+.. T Consensus 46 ~~~l~~Yy~g~~~i~~~-----~-~~~~~~~~~~~~~--~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~ 117 (474) T protein:vir:95 46 INVGQKYYDKDNDINYQ-----A-YKQDLHGNIDYTK--PDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQ 117 (474) T ss_pred HHHHHHHhcccCccccc-----c-chhhhcccccccc--cccccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHH Confidence 10000000000000000 0 0000000000000 00011223455566666776666676653222 1122211 Q ss_pred CCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--ce-EE--EEEEecCc-eEEEEchhh Q lcl|Aclame:pro 79 PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--GI-VY--TVLESNDR-PKMVLRQDQ 149 (383) Q Consensus 79 PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~~~-~~~~~~~~~ 149 (383) -.. -........+..+...+|.||.++..+. .....++|..+.++.++. +. .+ ++....+. ....+..+. T Consensus 118 ~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~ 196 (474) T protein:vir:95 118 VLD-TRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAET 196 (474) T ss_pred HHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCe Confidence 111 1345556667888899999999865532 334445555555443221 11 00 00011111 111122222 Q ss_pred eEEecccCc-------------------cc---------cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE Q lcl|Aclame:pro 150 MLHFRLMPD-------------------PQ---------YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKL 201 (383) Q Consensus 150 vih~r~~~~-------------------~~---------~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~ 201 (383) +.++..-.. .+ .....|.|-++.....++..+.+.....+.++..+.|-.++ T Consensus 197 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~ 276 (474) T protein:vir:95 197 VTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYIL 276 (474) T ss_pred EEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh Confidence 222211000 00 00124677777777777766655555555556666665554 Q ss_pred EEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccc Q lcl|Aclame:pro 202 TISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTS 281 (383) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~ 281 (383) + +... +..+.....+ +..+++.++++.+++.++..... ..+....+...+.|+..-++|..-... .+ T Consensus 277 ~--g~~~--~~~~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~ 343 (474) T protein:vir:95 277 R--GYEG--EDLSEFMEGL-------KYYKAINVSSDGGVETIQVEVPV-ASTKEYLDMMRAYIVEFGQGVDFQTDK-FG 343 (474) T ss_pred c--CCCc--ccccchhhhh-------hccceeeccCCCceeEEeccCCH-HHHHHHHHHHHHHHHHHhCCcCccccc-cc Confidence 3 3211 1111111111 12345556655555555433333 234566777788899999987543221 11 Q ss_pred cccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 282 TESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGA 350 (383) Q Consensus 282 ~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~ 350 (383) ++.+.-... .....|...|...++.+...++...-...+++.+++-+..|..+.++.+ .++|+++. T Consensus 344 ~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~ 420 (474) T protein:vir:95 344 SATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQIG---AQSQYLSK 420 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHHH---HHcCCCCh Confidence 222211110 0111222233333333333222222223456666666666776666654 45799999 Q ss_pred HHHHHHhCCCCccCCcccc-------ccCCC-----------CCCCCCC-CC Q lcl|Aclame:pro 351 EQAQFILTRSGFLPDNLPE-------FKPLT-----------NETKGGD-DK 383 (383) Q Consensus 351 nE~R~~~g~~p~~~~d~~~-------~~~~~-----------~~~~gGd-~~ 383 (383) ..++++++.-.-+..++-+ ..... .+..++| +| T Consensus 421 et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 472 (474) T protein:vir:95 421 ETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQ 472 (474) T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccc Confidence 9988887542211111100 00000 0111111 11 No 207 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=95.01 E-value=0.003 Score=34.43 Aligned_cols=375 Identities=9% Similarity=-0.009 Sum_probs=156.1 Q ss_pred Ccccchhccc---cccc-----cccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc-- Q lcl|Aclame:pro 1 MGLLTPKNFS---KRNA-----KNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT-- 70 (383) Q Consensus 1 Mg~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~-- 70 (383) +..+.++... ++.+ .....+... .+............ ..-+........|+..++-+-+-|+.+... T Consensus 42 ~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~-i~~~~~~~~~~~~~--~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~ 118 (512) T protein:vir:97 42 INEVSKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTRRKEEYMA--DNRVAHDYASYISDFINGYFLGNPIQCQDDDK 118 (512) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcccCc-cccccCcccccccC--cceeecchHHHHHHHHhhhhcccCceeccCCh Confidence 1112111110 0000 000000000 00000000000000 000122445556677777666677665322 Q ss_pred hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc---eE----EEEEE-ecC Q lcl|Aclame:pro 71 ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG---IV----YTVLE-SND 139 (383) Q Consensus 71 ~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~----~~~~~-~~~ 139 (383) .....+.+-+..-........+..+...+|.||.++..+. .....++|..+..+.++.. .. |+... .++ T Consensus 119 ~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~ 198 (512) T protein:vir:97 119 DVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDK 198 (512) T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccc Confidence 2223333333333555666778888899999999876542 2344455555544433211 11 11110 000 Q ss_pred c-----e-EEEEchhheEEecccCc--------------------cc---cCccccCcHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 140 R-----P-KMVLRQDQMLHFRLMPD--------------------PQ---YRYLIGRSPLESLQNALNLDDKASKSNMSA 190 (383) Q Consensus 140 ~-----~-~~~~~~~~vih~r~~~~--------------------~~---~~~~~G~spi~~~~~~i~~~~~~~~~~~~~ 190 (383) . . ...+..+.+.+++.... |. .....|.|-++.+...++....+..-..+. T Consensus 199 ~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~~~~~ 278 (512) T protein:vir:97 199 TDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANY 278 (512) T ss_pred cccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 0 0 01233333333321000 00 001247788888888887777666656666 Q ss_pred HhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCc---ccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 191 MENQINPAGKLTISNYLSDGKDLESAREEFEKANTGD---NSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISK 267 (383) Q Consensus 191 ~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~ 267 (383) ++..+.|-.+++-... .+++.....+....-..... +.+...-.++|.+++.+...... ..+....+...+.|+. T Consensus 279 ~~~~~~~~lv~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~e~~~~~L~~~I~~ 356 (512) T protein:vir:97 279 MSDLNDAMLLIKGNLN-LDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHM 356 (512) T ss_pred HHHhcCceeeeecCcc-CCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCH-HHHHHHHHHHHHHHHH Confidence 6666666666553222 23233222222111111110 11111123455555555443222 2334566777788888 Q ss_pred HhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC--C----ceeeeechhhhcc Q lcl|Aclame:pro 268 AFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN--A----PDLELDIKDMLDV 330 (383) Q Consensus 268 ~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~--~----~~~~fd~~~ll~~ 330 (383) .-++|..-.+.. +++.++-... .....|...|.-.++.+...+...-. . ..+++.+.+-+.. T Consensus 357 ~s~~p~~~~~~~-~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~ 435 (512) T protein:vir:97 357 FTNTPNMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPK 435 (512) T ss_pred HhCCcccCcccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCc Confidence 888876544321 1222221110 11111222232222323222221110 1 1356666677778 Q ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCCCCCCCC--------------CCC Q lcl|Aclame:pro 331 DDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLTNETKGG--------------DDK 383 (383) Q Consensus 331 d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~~~~~gG--------------d~~ 383 (383) |..+.++++.++. |+++...+.++++.-.-+..++ ..........+++ |++ T Consensus 436 ~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (512) T protein:vir:97 436 SLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKK 511 (512) T ss_pred CHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccccccc Confidence 9999999988884 8999988888875432111110 0000000000111 011 No 208 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=94.92 E-value=0.0032 Score=34.28 Aligned_cols=375 Identities=9% Similarity=-0.003 Sum_probs=157.2 Q ss_pred Ccccchhccccc--c--ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKR--N--AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~~~ 74 (383) ..+++......+ - ......+..+ ..-... ..... .....-+........++..++-+-+-|..+.. ..... T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g~~~-i~~~~~-~~~~~-~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~ 122 (511) T protein:vir:96 46 SKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELT-RRKEE-YMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLE 122 (511) T ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCc-cccccC-cCccc-ccCcceeecchHHHHHHHHHhhhccCCceeecCchHHHH Confidence 112211100000 0 0000000000 000000 00000 00000112244555666677766666766532 22333 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE----EEEEE-ecC---c Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV----YTVLE-SND---R 140 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~----~~~~~-~~~---~ 140 (383) .+.+-+..-........+..+...+|.||.++..+. ...-.++|..+..+.++. ... |+... .++ . T Consensus 123 ~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~ 202 (511) T protein:vir:96 123 AIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDED 202 (511) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccc Confidence 344433333556667778888899999999876542 334445555555433221 111 11100 000 0 Q ss_pred e---EEEEchhheEEecccCc--------------------c--c-cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 141 P---KMVLRQDQMLHFRLMPD--------------------P--Q-YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 141 ~---~~~~~~~~vih~r~~~~--------------------~--~-~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) . ...+.++.+.+++.-.. | . .....|.|-++-+...++..+.+.....+.++.. T Consensus 203 ~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~ 282 (511) T protein:vir:96 203 EVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDL 282 (511) T ss_pred eEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 0 01223333333211000 0 0 0012477888888888876666665556666766 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC-cc-cCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTG-DN-SGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVP 272 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~n-~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp 272 (383) +.|-.+++-.... +.++.....+...-.... .. .+...-.+++.++..++..... +.+....+...+.|+..-++| T Consensus 283 ~~~~lv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~e~~~~~L~~~I~~~s~~p 360 (511) T protein:vir:96 283 NDAMLLIKGNLNL-DPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHMFTNTP 360 (511) T ss_pred hCceeeeecCccC-CchhhcccccccceecccccccccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCc Confidence 6666665542222 222222111110000000 00 0111122345555555433222 233566777788899999998 Q ss_pred HHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC------ceeeeechhhhccCHHHH Q lcl|Aclame:pro 273 SDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNA------PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 273 ~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~------~~~~fd~~~ll~~d~~~~ 335 (383) ..-.+.. +++.+.-... .....|...|...++.|...+...-.. ..+++.+.+-+..|..+. T Consensus 361 ~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~ 439 (511) T protein:vir:96 361 NMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHHHH Confidence 7543321 1222221110 111122223333333333333322111 145666777778899999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCC--CCCCCCCCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLT--NETKGGDDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~--~~~~gGd~~ 383 (383) ++.+.++ .|+++...+.++++.-.-+..++ ....... .+...+|++ T Consensus 440 ~~~~~kl--~G~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:96 440 LKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDE 498 (511) T ss_pred HHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC Confidence 9999887 58999999888875432111111 0000000 010111111 No 209 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=94.89 E-value=0.0032 Score=34.23 Aligned_cols=368 Identities=11% Similarity=-0.001 Sum_probs=148.7 Q ss_pred Ccccchhccc-cc--cccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee--cchhhhh Q lcl|Aclame:pro 1 MGLLTPKNFS-KR--NAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE--NTATLNR 75 (383) Q Consensus 1 Mg~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~--~~~~~~l 75 (383) -.+.+..-.+ ++ .......+.. ........ ... ..+.+ +..+.....|+..++-+-.-|+.+. +...... T Consensus 23 ~~~i~~~~~~~~r~~~~~~yy~g~~-~i~~~~~~-~~~-~~~~k--i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~ 97 (453) T protein:vir:73 23 NDFMKKHQEEVERYEYLGNMYKGIM-EISSQKAK-DSW-KPDNR--LTNNFAKYIVDTFVGYFNGIPIKKTHDDKSVLEA 97 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-chhcCCCC-Ccc-Cccce--eecchHHHHHHHhhhhhcccCceeecCChHHHHH Confidence 1111100000 00 0000000000 00000000 000 00001 1123445556666665544454432 2223333 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--ce----EEEEEEecCceE-EEE Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--GI----VYTVLESNDRPK-MVL 145 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~-~~~ 145 (383) +..-............+..+.+.+|.||+.+..+. ...-..+|..+..+.++. .. .+++....+... ..+ T Consensus 98 l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vy 177 (453) T protein:vir:73 98 MQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCSPLNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVY 177 (453) T ss_pred HHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEeCCCCceeEEEEEEEEecCceEEEEEE Confidence 43333333455566678888899999998775532 223334444443332221 10 111111111111 112 Q ss_pred chhheEEeccc-----------------Cc-cccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcC Q lcl|Aclame:pro 146 RQDQMLHFRLM-----------------PD-PQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL 207 (383) Q Consensus 146 ~~~~vih~r~~-----------------~~-~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~ 207 (383) ..+.+++++.- +. .-.....|.|-++.+...++..+.+.....+..+..+.|..+++ +.. T Consensus 178 t~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~--g~~ 255 (453) T protein:vir:73 178 TLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFL--GAE 255 (453) T ss_pred eCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeee--cCC Confidence 22222221100 00 00001247777887777777666555555555666666666654 322 Q ss_pred CCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchh Q lcl|Aclame:pro 208 SDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHS 287 (383) Q Consensus 208 ~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~ 287 (383) .+++....++..---...+...+.....+++.++..++....+ ..+....+.....|+..-++|..-.. ..++.+ T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~~~l~~~I~~~s~~p~~~~~--~~gn~S-- 330 (453) T protein:vir:73 256 VDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSD-VQTENLLNRLERSIFQFTMAANISDE--NFGNSS-- 330 (453) T ss_pred CCchhhhcccccccccccccccccccccccCceeEEeeecCCH-HHHHHHHHHHHHHHHHHhCCcccCcc--cccCcc-- Confidence 2333333332211000111112222333445555545433323 22345667777888888888742211 112222 Q ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcC---CceeeeechhhhccCHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 288 NIDQIKA--------------TYLANLNSYVNPIVDELRLKMN---APDLELDIKDMLDVDDSILINQVSNLAKSGVLGA 350 (383) Q Consensus 288 ~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~---~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~ 350 (383) .+..+. .|...|...++.+...++..-. ...+++.+.+-+..|..+.++.+.+++ |+++. T Consensus 331 -g~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--giis~ 407 (453) T protein:vir:73 331 -GVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIKEQAETANILK--GITSE 407 (453) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCcH Confidence 122211 1222233333322222211111 124566667777889999999999886 78998 Q ss_pred HHHHHHhCCCCccCCcc----------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 351 EQAQFILTRSGFLPDNL----------PEFKPLTNETKGGDDK 383 (383) Q Consensus 351 nE~R~~~g~~p~~~~d~----------~~~~~~~~~~~gGd~~ 383 (383) .-+.++++.-.-+..+. .......+....-+++ T Consensus 408 et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 450 (453) T protein:vir:73 408 ETALSVISVIPDVQAEMEKIKKKKLLQLSLTRTSNLVRMKQMR 450 (453) T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCcchhhh Confidence 88887764322111110 0000001111111111 No 210 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=94.17 E-value=0.0052 Score=33.11 Aligned_cols=353 Identities=10% Similarity=0.046 Sum_probs=139.8 Q ss_pred Ccccchhccc-cc--cccccccccchhhh---hhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chh Q lcl|Aclame:pro 1 MGLLTPKNFS-KR--NAKNMVYPSNPAFF---TTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TAT 72 (383) Q Consensus 1 Mg~~~~~~~~-~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~ 72 (383) -.+.+..-.+ ++ ..+....+...-.. ..... .......+..-+..+.....++..++-+-+-|..+.. ... T Consensus 32 ~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~-~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~d~~~ 110 (468) T protein:vir:96 32 LRLITKHKENVEDITVGERYYNHQPDVLFNAPKRNVK-GEIDPFKPDWRMYTNYHQNLVDQKVAYAVANPVTYGTEDEKS 110 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc-ccccccccccccccchHHHHHHHHHhhhccCCceeccCChHH Confidence 0000000000 00 00000000000000 00000 0000000011122344555666666666555655432 222 Q ss_pred hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceEE--EEEEecCc-eEE Q lcl|Aclame:pro 73 LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIVY--TVLESNDR-PKM 143 (383) Q Consensus 73 ~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~-~~~ 143 (383) ...+..-.. .+.......+......+|.+|+.+..+. .....++|..+..+.++. ...+ +++..++. ... T Consensus 111 ~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~~ 189 (468) T protein:vir:96 111 LKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDEQGEFKTFRVPAEQAIPIWTNKERDELKAFIRLYELDGGERVE 189 (468) T ss_pred HHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEE Confidence 221111111 1344555667788889999998765432 334445555554433211 1110 00011111 111 Q ss_pred EEchhh---------------------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 VLRQDQ---------------------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKAS 184 (383) Q Consensus 144 ~~~~~~---------------------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~ 184 (383) .+..+. |+++++ -..|.|-++.+...++..+.+. T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n-------~~~g~sd~e~v~~liDa~d~~~ 262 (468) T protein:vir:96 190 YWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKN-------NPQEVSDLFMYKTIIDAMDKRL 262 (468) T ss_pred EEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecC-------CCCCCCchHHHHHHHHHHHHHH Confidence 111222 222221 1247777777777777666665 Q ss_pred HHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc--CC--ceeEecccChhHHHHHHHHHHH Q lcl|Aclame:pro 185 KSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP--DG--FDYTQLEMKTDVFKALADNSAY 260 (383) Q Consensus 185 ~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~--~g--~~~~~l~~~~~~~~~l~e~~~~ 260 (383) ....+.++..+.|..+++ +...+ ..+......+ .++++.++ +| +++...+... +......+. T Consensus 263 S~~~~~~~~~~~p~lv~~--g~~~~--~~~~~~~~~~-------~~~~i~~~~d~~~~~~~l~~~~~~---~~~~~~~~~ 328 (468) T protein:vir:96 263 SDTQNTFDEATELIYVLK--GYEGE--DLEEFMYNLK-------YYKAINVDGDGSGGVDTIQIDVPV---QSAKEYLDM 328 (468) T ss_pred HHHHHHHHHhcCceeeee--cCCcc--ccchhhhhhh-------cCceEEecCCCCCcceEEeecCCh---HHHHHHHHH Confidence 555666666666765544 32211 1111111111 12344442 33 4444433332 233466777 Q ss_pred HHHHHHHHhcCCHHHhccccccccchhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhcCCceeeeechh Q lcl|Aclame:pro 261 SADQISKAFGVPSDILGGGTSTESQHSNIDQIKAT--------------YLANLNSYVNPIVDELRLKMNAPDLELDIKD 326 (383) Q Consensus 261 ~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~--------------~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ 326 (383) ..+.|+..-++|..-.. ..+++.+ .++.+.. |...|...++.+...+....-...+.+.++. T Consensus 329 l~~~I~~~s~~p~~~~~-~~~~n~S---g~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~~ 404 (468) T protein:vir:96 329 LRDYVIEFGQGVDFQQD-KFGNSPS---GIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFNF 404 (468) T ss_pred HHHHHHHHhCccccccc-ccccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecC Confidence 77888888888753211 1122222 2222211 1122222222222222111111245555556 Q ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-------ccccCCCCCCCCC-CCC Q lcl|Aclame:pro 327 MLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-------PEFKPLTNETKGG-DDK 383 (383) Q Consensus 327 ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-------~~~~~~~~~~~gG-d~~ 383 (383) -+..|..+.++. +..+|+++...+.++++.-.-+..++ ...........|+ |++ T Consensus 405 ~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 466 (468) T protein:vir:96 405 NVMVNELEQSQI---GVNSQYLSKETVVTNHPWVDDPVAEMERIDQEELALPSIEEGLNGKENNE 466 (468) T ss_pred CCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCC Confidence 556666665554 45679999999988764321111111 1111111223333 444 No 211 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=94.12 E-value=0.0053 Score=33.05 Aligned_cols=362 Identities=10% Similarity=0.050 Sum_probs=155.7 Q ss_pred Cc------------ccchhcccc--c--cccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccce Q lcl|Aclame:pro 1 MG------------LLTPKNFSK--R--NAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAH 64 (383) Q Consensus 1 Mg------------~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 64 (383) |. +.+....+. + .......+.. ..... .....-+..-+.++....+|+..++-+-.-| T Consensus 19 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~-~i~~~-----~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p 92 (470) T protein:vir:99 19 FPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKH-KILTA-----PEKETGADNRIVVNSAKYVVDVYNGYFCGIE 92 (470) T ss_pred eCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhcccc-ccccC-----cccccCCcceeecchHHHHHHHHhhhhccCC Confidence 11 111000000 0 0000000000 00000 0000000001123445566666666665556 Q ss_pred eEeecch---hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCc---eEE--- Q lcl|Aclame:pro 65 FKTENTA---TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMG---IVY--- 132 (383) Q Consensus 65 ~~v~~~~---~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~--- 132 (383) +.+.... ....+.+-............+......+|.+|+++..+. .....++|..+..+.++.. ..+ T Consensus 93 ~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~vr 172 (470) T protein:vir:99 93 PKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGEDARPHLMYSSPNHAFIIYDDTVQRQPLAFVH 172 (470) T ss_pred eeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeEEEEEEccceeEEEEcCCCCcceEEEEE Confidence 5543221 112223333333556677888888999999999875532 2334445555544433221 110 Q ss_pred EEEEecCce----EEEEchhheEEeccc-------------------Cc-cccCccccCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 133 TVLESNDRP----KMVLRQDQMLHFRLM-------------------PD-PQYRYLIGRSPLESLQNALNLDDKASKSNM 188 (383) Q Consensus 133 ~~~~~~~~~----~~~~~~~~vih~r~~-------------------~~-~~~~~~~G~spi~~~~~~i~~~~~~~~~~~ 188 (383) ++....+.. ...+..+.+++++.. +. .-.....|.|-++.+...++..+.+..... T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~ 252 (470) T protein:vir:99 173 YQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKA 252 (470) T ss_pred EEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHH Confidence 111111110 011122222221100 00 000012577888887788877776666666 Q ss_pred HHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceec-----cCCceeEecccChhHHHHHHHHHHHHHH Q lcl|Aclame:pro 189 SAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVL-----PDGFDYTQLEMKTDVFKALADNSAYSAD 263 (383) Q Consensus 189 ~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl-----~~g~~~~~l~~~~~~~~~l~e~~~~~~~ 263 (383) +.+...+.|-.++.-.... +.+..+.+. .+.. .+++.+ +.+.++..++..... ..+....+...+ T Consensus 253 ~~~~~~~~~~~~i~g~~~~-~~~~g~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~ 322 (470) T protein:vir:99 253 NQVEYFDNAYMYMIGFKLP-EDDEGNPKF-DFKN-------NRVLYVSQLDPDTNPQIGFIAKPDAD-QMQENLIQHLTD 322 (470) T ss_pred HHHHHhcCceeeeecCCcc-cccccchhh-hhhh-------cceeeecCCCCCCCCcceEEeecCCh-HHHHHHHHHHHH Confidence 6667777676665533211 111111111 1111 122222 234455555433322 334566777889 Q ss_pred HHHHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCC----ceeeeechhhh Q lcl|Aclame:pro 264 QISKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMNA----PDLELDIKDML 328 (383) Q Consensus 264 ~Ia~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~~----~~~~fd~~~ll 328 (383) .|+..-++|....+.. .++.++.... .....|...|...++.+...+...-.. ..+++.+.+-+ T Consensus 323 ~i~~~s~~p~~~~~~~-~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~ 401 (470) T protein:vir:99 323 FIFMMAMVPNIQDKNF-AGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRNL 401 (470) T ss_pred HHHHHhCCcccccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCCC Confidence 9999999986543321 2222221110 011112222333333333332222111 24666677778 Q ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc---------------cccc--CC-CCCCCCCCCC Q lcl|Aclame:pro 329 DVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL---------------PEFK--PL-TNETKGGDDK 383 (383) Q Consensus 329 ~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~---------------~~~~--~~-~~~~~gGd~~ 383 (383) ..|..+.++++.++. |+++...+.++++.- .+..+ .... .+ .....+|+|+ T Consensus 402 p~~~~e~a~~~~kl~--giis~et~l~~l~~v--d~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 402 PEDMASAIDNAKNAE--GIVSKKTQLGMIPDI--EPDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred CcCHHHHHHHHHHHh--ccCCHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCccCC Confidence 889999999999885 789998888877542 21110 0000 01 1111233444 No 212 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=94.00 E-value=0.0057 Score=32.89 Aligned_cols=352 Identities=11% Similarity=0.017 Sum_probs=147.2 Q ss_pred Ccccchh-----------------ccccccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 1 MGLLTPK-----------------NFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSA 63 (383) Q Consensus 1 Mg~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 63 (383) ..+.++. ...+......... ................+ .-+.+.-....|+..++-+-+- T Consensus 7 ~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~--~~~~~~~~~~~~~~~~~--~ki~~n~~k~Iv~~~~~yl~G~ 82 (470) T protein:vir:10 7 KKLIQNTSTSRNDLINNYKQAVNYYENKTDITTRNNG--KAKLNKEGKKDPLRSAD--NRIPSNFYQLLVDQEAGYVASV 82 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccc--hhcccccccccccccCC--cccccchHHHHHHhhhhheecc Confidence 1111110 0000000000000 00000000000000000 0112233444556666666666 Q ss_pred eeEeecch--h-hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC--c-----e Q lcl|Aclame:pro 64 HFKTENTA--T-LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-----I 130 (383) Q Consensus 64 ~~~v~~~~--~-~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-----~ 130 (383) |+.+.... . ..+...-+ .+..+-...+...+..+|.||.++..+. +....++|..+.++.++. + . T Consensus 83 p~~~~~~d~~~~~~l~~~~~--~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~a~i 160 (470) T protein:vir:10 83 FPDIDVGKDADNKKIIDVLG--DDRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYATTLDNKLLGIL 160 (470) T ss_pred ceeeecCchHHHHHHHHHHh--hhHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 66543221 1 12211111 1233444556677888999998865532 334444555444433221 1 1 Q ss_pred EEEEEE-ecCceE----EEEchhhe---------------------------------------------EEecccCccc Q lcl|Aclame:pro 131 VYTVLE-SNDRPK----MVLRQDQM---------------------------------------------LHFRLMPDPQ 160 (383) Q Consensus 131 ~~~~~~-~~~~~~----~~~~~~~v---------------------------------------------ih~r~~~~~~ 160 (383) .++... ..+... ..+....+ +|+++ + T Consensus 161 r~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n---n- 236 (470) T protein:vir:10 161 RSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSK---N- 236 (470) T ss_pred EEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeec---C- Confidence 111111 111110 11122222 33321 1 Q ss_pred cCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceec----- Q lcl|Aclame:pro 161 YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVL----- 235 (383) Q Consensus 161 ~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl----- 235 (383) ..|.|-++.....++..+.+.....+.++..+.|..+++-......++ ....+.. .+.+.+ T Consensus 237 ---~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~~~----~~~~~~~-------~~~i~~~~~~~ 302 (470) T protein:vir:10 237 ---KYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADLHQ----FMNDLRK-------YKSIKINNTGN 302 (470) T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccccch----hhhhhhh-------cCeEeccCCCC Confidence 147788888888887766666666666676666776665332211122 1222221 122222 Q ss_pred --cCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHH-----------HHHHHHHHHHHH Q lcl|Aclame:pro 236 --PDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNID-----------QIKATYLANLNS 302 (383) Q Consensus 236 --~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p 302 (383) ++++++..-..+. +......+...+.|+..-++|..-.. ..++.++.... .....|...|.. T Consensus 303 ~~~~~~~~lt~~~~~---~~~~~~~~~L~~~I~~~s~~p~~~~~--~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~ 377 (470) T protein:vir:10 303 GDNSGVDKLQIDIPV---EARDDALKITRKNIFLFGQGIDPANF--ESSNASGVAIKMLYSHLELKAAKTQTYFEHAINE 377 (470) T ss_pred CcCceeEEEeecCCh---HHHHHHHHHHHHHHHHHhCCCCCCcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2334555444433 23345667777888888888743211 11222221110 111122223333 Q ss_pred HHHHHHHHHHhh-cCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccc Q lcl|Aclame:pro 303 YVNPIVDELRLK-MNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEF 370 (383) Q Consensus 303 ~~~~i~~~l~~~-l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~ 370 (383) .++.|...++.. .-...+.+.++.-+..|..+.++.+.++ .|+++..-+.++++.-.-+..++ +.. T Consensus 378 ~~~~i~~~l~~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~p~v~D~~~E~eri~~E~~e~~~~~ 455 (470) T protein:vir:10 378 LVRAIMRYLNFSDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKANPIVDDWQQELKDLAKDKEENDPYS 455 (470) T ss_pred HHHHHHHHhcccCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhh Confidence 333333322211 0113567777888888999999999887 58999998888775322111111 111 Q ss_pred cC--CCCCCCCCCCC Q lcl|Aclame:pro 371 KP--LTNETKGGDDK 383 (383) Q Consensus 371 ~~--~~~~~~gGd~~ 383 (383) .. .......+||| T Consensus 456 ~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 456 NQADELNGKGVNDEQ 470 (470) T ss_pred ccccccCCCCCCCCC Confidence 11 11111122444 No 213 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=93.91 E-value=0.006 Score=32.78 Aligned_cols=370 Identities=12% Similarity=0.012 Sum_probs=142.7 Q ss_pred Ccccchhcccccc----ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee--cchhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN----AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE--NTATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~--~~~~~~ 74 (383) -.|+++...+++. ......+............... ..+..-+..+.....|+..++-+-.-|+.+. +..... T Consensus 28 ~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~--~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~~~d~~~~~ 105 (506) T protein:vir:94 28 MKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHED--GKADHRATHSFAKYIADFQTSYSVGNPINVKLPDDGSNS 105 (506) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc--cCCcceeecchHHHHHHHhhhhhcccCceeecCcchHHH Confidence 2222221111000 0000000000000000000000 0001112334566667777766655565542 233333 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceE----EEEE--------- Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV----YTVL--------- 135 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~----~~~~--------- 135 (383) .+.+-+..-........+......+|.||+++..+. ..+..++|..+..+.++. ... ++.. T Consensus 106 ~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~ 185 (506) T protein:vir:94 106 GFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVS 185 (506) T ss_pred HHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEecCCCCCceEEEEEEEeeeeccCCcee Confidence 333333333444556677778889999998876542 233344554444433221 111 1100 Q ss_pred -------EecCceEEEEch-----------------hheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 -------ESNDRPKMVLRQ-----------------DQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAM 191 (383) Q Consensus 136 -------~~~~~~~~~~~~-----------------~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~ 191 (383) .........+.. =.|+++++ . -.|.|.++.....++..+.+.....+.. T Consensus 186 ~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n--~-----~~~~sd~e~~~~liDa~d~~~S~~~~~~ 258 (506) T protein:vir:94 186 TINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKN--S-----NFRLGDFENVLPLIDLYDAAQSDTANYM 258 (506) T ss_pred EEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecC--C-----CCCCCchhhhHHHHHHHHHHHHHHHHHH Confidence 000000111100 01233321 1 1355666655555554443333333333 Q ss_pred hccCCcceEEEEcCcC--------------------CCHHHHHHHHHHHHHHh-cC-cccCCceeccCCceeEecccChh Q lcl|Aclame:pro 192 ENQINPAGKLTISNYL--------------------SDGKDLESAREEFEKAN-TG-DNSGRLMVLPDGFDYTQLEMKTD 249 (383) Q Consensus 192 ~ng~~p~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~g-~n~g~~~vl~~g~~~~~l~~~~~ 249 (383) +..+.|..+++-.... ...+....+.+.+.... -. ...+.+.....+.+++-+..... T Consensus 259 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 338 (506) T protein:vir:94 259 TDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYD 338 (506) T ss_pred HHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCC Confidence 3222233222211000 00011111111111100 00 00111112223334444443332 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcC-- Q lcl|Aclame:pro 250 VFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMN-- 316 (383) Q Consensus 250 ~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~-- 316 (383) . +......+.....|+..-++|..-... ..++.++... ......|...|...++.+...++..-. T Consensus 339 ~-~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~ 416 (506) T protein:vir:94 339 V-VGSEAYKKRVAGDIHKFSHTPDLTDEN-FASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDW 416 (506) T ss_pred H-HHHHHHHHHHHHHHHHHhCcccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc Confidence 2 334567778889999999998632211 1122222110 111122333444444444443332111 Q ss_pred ---CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------c-----c---ccCCC Q lcl|Aclame:pro 317 ---APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------P-----E---FKPLT 374 (383) Q Consensus 317 ---~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~-----~---~~~~~ 374 (383) ...+++.+.+-+..|..+.++.+.++ .|+++...++++++.-.-+..++ . . ..... T Consensus 417 ~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 494 (506) T protein:vir:94 417 TFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQLPGVTNPQDIVDMMKEQSANGDYSFDQNGVISNDGQT 494 (506) T ss_pred ccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcchhhcCCCcccCc Confidence 12356666777788999999999888 58999999998874322111110 0 0 00000 Q ss_pred CCC-CCCCCC Q lcl|Aclame:pro 375 NET-KGGDDK 383 (383) Q Consensus 375 ~~~-~gGd~~ 383 (383) ..+ ..+|+| T Consensus 495 ~~~~~~~~~e 504 (506) T protein:vir:94 495 NTTATQTDEE 504 (506) T ss_pred cccccccccC Confidence 000 111222 No 214 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=93.63 E-value=0.0069 Score=32.43 Aligned_cols=375 Identities=8% Similarity=-0.019 Sum_probs=150.9 Q ss_pred Ccccchhcccccc----ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN----AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~~~ 74 (383) ..|+++....++. ......+..+-.... ....... ....-+........|+..++-+-+-|..+.. ..... T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~--~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~ 122 (511) T protein:vir:99 46 SKYIEHHMDYQRPRLKVLSDYYEGKTKNLVEL--TRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLE 122 (511) T ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCcccccc--Ccccccc-cCcceeecchHHHHHHHHHhhhcccCceeecCchHHHH Confidence 2222221111000 000000000000000 0000000 0000012234455566666666666666532 22223 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ce----EEEEEE-ecC---c Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GI----VYTVLE-SND---R 140 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~----~~~~~~-~~~---~ 140 (383) .+.+-+..-........+......+|.||+++..+. ...-.++|..+.++.++. .. .++... ..+ . T Consensus 123 ~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~ 202 (511) T protein:vir:99 123 AIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDED 202 (511) T ss_pred HHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccc Confidence 333322222455566777888899999999876532 334444555554433221 11 111100 000 0 Q ss_pred ---eEEEEchhheEEecccCcc-----------------------ccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 141 ---PKMVLRQDQMLHFRLMPDP-----------------------QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) Q Consensus 141 ---~~~~~~~~~vih~r~~~~~-----------------------~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng 194 (383) ....+.++.+.+++..... -.....|.|.++.+...++....+.....+.+... T Consensus 203 ~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~ 282 (511) T protein:vir:99 203 EVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDL 282 (511) T ss_pred eEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 0012333333332210000 00012477778877777776665555555555555 Q ss_pred CCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC--cccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 195 INPAGKLTISNYLSDGKDLESAREEFEKANTG--DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVP 272 (383) Q Consensus 195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp 272 (383) +.|..+++-... .+.++....++.-.-.... .-.+...-.++|.+++.++..... +.+....+...+.|+..-++| T Consensus 283 ~~~~lv~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~e~~~~~L~~~I~~~s~~P 360 (511) T protein:vir:99 283 NDAMLLIKGNLN-LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDV-QGTEAYKDRLNSDIHMFTNTP 360 (511) T ss_pred hchhhhhccCcc-cCchhhcccccccceecccccccccccccCCCCcceeEEeecCCH-HHHHHHHHHHHHHHHHHhCCc Confidence 555555443222 2222222221110000000 000111223445565555543322 333456777788899988998 Q ss_pred HHHhccccccccchhHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhcC--C----ceeeeechhhhccCHHHH Q lcl|Aclame:pro 273 SDILGGGTSTESQHSNIDQ-----------IKATYLANLNSYVNPIVDELRLKMN--A----PDLELDIKDMLDVDDSIL 335 (383) Q Consensus 273 ~~~lg~~~~~~~~~~~~e~-----------~~~~~~~tl~p~~~~i~~~l~~~l~--~----~~~~fd~~~ll~~d~~~~ 335 (383) ..-.+.. +++.+...... ....|...|.-.++.+...+...-. . ..+++.+.+-+..|..+. T Consensus 361 ~~~~~~~-~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~ 439 (511) T protein:vir:99 361 NMKDDNF-SGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEE 439 (511) T ss_pred ccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHH Confidence 7543322 12222211110 1111122222222222222222110 0 135666677777899999 Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------c----cccCCCC-----------CCCCCCCC Q lcl|Aclame:pro 336 INQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------P----EFKPLTN-----------ETKGGDDK 383 (383) Q Consensus 336 ~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~----~~~~~~~-----------~~~gGd~~ 383 (383) ++.+.++. |+++...+.++++.-+-+..++ . ....... ..++.++| T Consensus 440 ~~~~~kl~--GiiS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 440 LKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred HHHHHHHh--ccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcCcccccC Confidence 99998884 8899988888774322100000 0 0000000 01111111 No 215 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=93.15 E-value=0.0086 Score=31.91 Aligned_cols=363 Identities=11% Similarity=0.023 Sum_probs=143.3 Q ss_pred Ccccchhcccc---ccccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeec--chhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSK---RNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN--TATLNR 75 (383) Q Consensus 1 Mg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~--~~~~~l 75 (383) ..+.+..-.+. ........+... ....... .....+. -+.......+|+..++-+-+-|+.+.. ...... T Consensus 22 ~~~i~~~~~~~~~~~~l~~Yy~g~~~-i~~~~~~--~~~~~~~--ki~~n~~~~Iv~~~~~~l~g~p~~~~~~~~~~~~~ 96 (499) T protein:vir:10 22 NYAIRELQNRKKRLDKLSDYYNGKQE-IEKHEFD--NATVEAA--NVMVNHAKYITDMNVGFMTGNPVKYVAEKGKNIDD 96 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-hhcCCcC--cCCCCcc--eeecchHHHHHHHHhhhhcccCceeecCChhHHHH Confidence 11111110000 000000000000 0000000 0000000 111234455666666666555655432 221111 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc--------------------ceEEeecCcceeeeecCCc------ Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN--------------------LEHIPNSDVQINYLPGNMG------ 129 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~------ 129 (383) +.+-...-....+...+......+|.+|.++..+. +....++|..+..+.++.. T Consensus 97 l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~ 176 (499) T protein:vir:10 97 ILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATVVVCDDTVEHDPLF 176 (499) T ss_pred HHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceEEEecCCCCcceEE Confidence 22221222444567777888899999998764322 1223344444433322211 Q ss_pred -eEEEEEE-ecCce----EEEEchhheEEecccC--------------cccc---------CccccCcHHHHHHHHHHHH Q lcl|Aclame:pro 130 -IVYTVLE-SNDRP----KMVLRQDQMLHFRLMP--------------DPQY---------RYLIGRSPLESLQNALNLD 180 (383) Q Consensus 130 -~~~~~~~-~~~~~----~~~~~~~~vih~r~~~--------------~~~~---------~~~~G~spi~~~~~~i~~~ 180 (383) ..+++.. ..+.. ...+.++.|.+++.-. +..+ ....|.|-++.+...++.. T Consensus 177 ~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~d~e~v~~liD~~ 256 (499) T protein:vir:10 177 AVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNEERQGDFEQLISLIDAY 256 (499) T ss_pred EEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCCCCCCchHhHHHHHHHH Confidence 1111111 01110 1122233333221000 0000 0123677777777777766 Q ss_pred HHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCcee--ccCCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 181 DKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMV--LPDGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 181 ~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~v--l~~g~~~~~l~~~~~~~~~l~e~~ 258 (383) +.+.....+.++..+.|..+++-.....+++....+ +.+++.. .++|.+++.+...... ..+.... T Consensus 257 ~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~~~~ 324 (499) T protein:vir:10 257 NLLQTDRISDKEAFVDALLVTFGFGLGDDKDDIQRL-----------KRGAIEAPPREEGADIEWLTKSFDE-TQVNLLS 324 (499) T ss_pred HHHHHHHHHHHHHhcCceeeeecCccccccchhhhh-----------hhcceeccCCCCCCcceEEeccCCH-HHHHHHH Confidence 666555666666666676665532211111111111 1122222 2355555555543322 2234566 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhcC---Cceeeeec Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSN-----------IDQIKATYLANLNSYVNPIVDELRLKMN---APDLELDI 324 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~-----------~e~~~~~~~~tl~p~~~~i~~~l~~~l~---~~~~~fd~ 324 (383) +...+.|...-++|..-.+. ..++.++-. .+.....|...+...++.+...++..-. ...+++.+ T Consensus 325 ~~l~~~I~~~s~~p~~~~~~-~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~i~f 403 (499) T protein:vir:10 325 QSIENDIHKISYVPNMNDEK-FMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKGANDDASGCKISL 403 (499) T ss_pred HHHHHHHHHHhCcccCCchh-hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEe Confidence 66677787777776321110 011111111 0111122223333333333333321110 12456666 Q ss_pred hhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 325 KDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEFKPLTNETKGGDDK 383 (383) Q Consensus 325 ~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~~~~~~gGd~~ 383 (383) ..-+..|..+.++.+.++ .|+++..-+.++++.-.-+..+. .......++..+++++ T Consensus 404 ~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 474 (499) T protein:vir:10 404 VANIPSNLSDVVNNVKNA--DGIIPRKYTYSWLPDVDNPQDVIDEMNQQDAETIKKNQEALRGQDPDRLELED 474 (499) T ss_pred CCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC Confidence 666778999999999988 58899988887765321111110 0000111111111111 No 216 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=92.80 E-value=0.0099 Score=31.56 Aligned_cols=361 Identities=12% Similarity=0.077 Sum_probs=144.0 Q ss_pred Cc-----ccchhccccccccc------cccccchhhh----hhhccCcccccccHHHHhhhHHHHHHHHHHHHhhcccee Q lcl|Aclame:pro 1 MG-----LLTPKNFSKRNAKN------MVYPSNPAFF----TTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHF 65 (383) Q Consensus 1 Mg-----~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~ 65 (383) .+ ++.++...-..... ....+..... ......... ...+..-+..+....+|+..++-+-+-|+ T Consensus 23 ~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~-~~~~~~ki~~n~~k~ivd~~~~yl~g~p~ 101 (478) T protein:vir:10 23 KYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYD-ETKPDWRMYTNYHQNLVDQKVAYAVANPV 101 (478) T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcccccc-cccccceeccchHHHHHHHHhhhhcccCc Confidence 00 00000000000000 0000000000 000000000 00000011234566677777777766676 Q ss_pred Eeecch--hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec---cceEEeecCcceeeeecC---CceEE--EEE Q lcl|Aclame:pro 66 KTENTA--TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ---NLEHIPNSDVQINYLPGN---MGIVY--TVL 135 (383) Q Consensus 66 ~v~~~~--~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~--~~~ 135 (383) .+.... ....+..-.. .........+......+|.+|+.+..+ ......++|..+..+.++ +...+ +++ T Consensus 102 ~~~~~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~~~ir~~ 180 (478) T protein:vir:10 102 TFGVDNDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPIWTNKERDELQAFIRVY 180 (478) T ss_pred eeecCChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEE Confidence 653322 2211111111 134555566778888999999887543 233444555555443321 11111 001 Q ss_pred EecCc-eEEEEchhheEEecccC-----------------------cccc---------CccccCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 ESNDR-PKMVLRQDQMLHFRLMP-----------------------DPQY---------RYLIGRSPLESLQNALNLDDK 182 (383) Q Consensus 136 ~~~~~-~~~~~~~~~vih~r~~~-----------------------~~~~---------~~~~G~spi~~~~~~i~~~~~ 182 (383) ...+. ....+..+.|.+++... ..++ ....|.|-++.+...++..+. T Consensus 181 ~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~ 260 (478) T protein:vir:10 181 ELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIIDALDK 260 (478) T ss_pred eeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHHHHHH Confidence 11111 11112223332221100 0000 012477878777777776665 Q ss_pred HHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceec--c--CCceeEecccChhHHHHHHHHH Q lcl|Aclame:pro 183 ASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVL--P--DGFDYTQLEMKTDVFKALADNS 258 (383) Q Consensus 183 ~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl--~--~g~~~~~l~~~~~~~~~l~e~~ 258 (383) +.....+.++..+.|..+++ +...+ ........+.. .+++.+ + ++.++...+.+ . ..+.+.. T Consensus 261 ~~S~~~~~~~~~~~~~~~~~--g~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~~~ 326 (478) T protein:vir:10 261 RLSDTQNTFDESVELIYILK--GYEGE--DMKDFMHNLKY-------YKAISVAGESGSGVDTIKVEVP--I-DSVKEYT 326 (478) T ss_pred HHHHHHHHHHHhhCcceeee--cCCcc--cccchhhhhhh-------CceeEecCCCCCcceEEeecCC--H-HHHHHHH Confidence 55555555565555655544 32111 11111111111 123333 2 33444444333 2 2345667 Q ss_pred HHHHHHHHHHhcCCHHHhccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCCceeeeec Q lcl|Aclame:pro 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMNAPDLELDI 324 (383) Q Consensus 259 ~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~ 324 (383) +...+.|+..-++|..-.+. .+++.++ ++.+. .|...|...++.+.+.++...-...+++.+ T Consensus 327 ~~l~~~I~~~s~~p~~~~~~-~~~n~Sg---~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~~i~i~f 402 (478) T protein:vir:10 327 KMLRDYIIEFGQGVDFQQDK-FGNSPSG---IALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQDIEITF 402 (478) T ss_pred HHHHHHHHHHhCCcCcCccc-cccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEe Confidence 77788898888887532221 1122222 22211 111222222222222222111122456666 Q ss_pred hhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc--------------ccccCCCC---CCCCCCCC Q lcl|Aclame:pro 325 KDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL--------------PEFKPLTN---ETKGGDDK 383 (383) Q Consensus 325 ~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~--------------~~~~~~~~---~~~gGd~~ 383 (383) ++-+..|..+.++.+.++ .|+++...+.++++.-.-+..++ +......+ ..++.|++ T Consensus 403 ~~~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~d~~ 476 (478) T protein:vir:10 403 NFNVMVNELENSQIAMNS--TGLLSKETILGNHSWVQDPVAEMERIEQENIELNQQLPDIEEGLNDEQQRQSEDNQ 476 (478) T ss_pred CCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCcccccccCcCCC Confidence 777778899988888876 58899888887764321011100 11011000 01111222 No 217 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=92.49 E-value=0.011 Score=31.28 Aligned_cols=365 Identities=10% Similarity=0.038 Sum_probs=140.9 Q ss_pred Ccc------cchhcc----ccc-----cccccccccchhhhh---hhccCc---ccccccHHHHhhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MGL------LTPKNF----SKR-----NAKNMVYPSNPAFFT---TTVGGM---QLSYVSALSALQNTNVYSVINRIASD 59 (383) Q Consensus 1 Mg~------~~~~~~----~~~-----~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~v~~~i~~ia~~ 59 (383) |-+ |...+. .++ ..+....+.. .... ...+.. ......+..-+.+.-..-.|+..++- T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h-~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~y 86 (537) T protein:vir:78 8 KPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQEN-DIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQY 86 (537) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhhcccccccccccccccccccccccccchHHHHHHHHhhh Confidence 111 000000 000 0000000000 0000 000000 00000000001122333455555555 Q ss_pred hccceeEeecc--hh---hhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCCceE Q lcl|Aclame:pro 60 VSSAHFKTENT--AT---LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNMGIV 131 (383) Q Consensus 60 ia~~~~~v~~~--~~---~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 131 (383) +-+-|+.+... .. ...+..-+. .........+..++..+|.||.++..+. +....++|..+.++.++.+.. T Consensus 87 l~G~Pv~~~~~d~~~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~p~~~~pv~d~~~~~ 165 (537) T protein:vir:78 87 LLSNGVEVKVKDEDNTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVDGLTLIPVFDDYGVL 165 (537) T ss_pred hcccCceeecCcchhHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEccceeEEEEcCCCCc Confidence 55667665322 11 112222221 2333455666778889999998765432 233444454444433222110 Q ss_pred -----EEEE-Eec-----Cc---eEEEEchhheEEecccCc--------------------------------------- Q lcl|Aclame:pro 132 -----YTVL-ESN-----DR---PKMVLRQDQMLHFRLMPD--------------------------------------- 158 (383) Q Consensus 132 -----~~~~-~~~-----~~---~~~~~~~~~vih~r~~~~--------------------------------------- 158 (383) ++.. ... +. ....+.++.|.+++.-.. T Consensus 166 ~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 245 (537) T protein:vir:78 166 KMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQV 245 (537) T ss_pred eeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccccccccccc Confidence 0000 000 00 001222222222211000 Q ss_pred --ccc---------CccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 159 --PQY---------RYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGD 227 (383) Q Consensus 159 --~~~---------~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 227 (383) .++ .-..|.|-++.....++..+.+....++.+..-+.|-.++.-.+....++ +.+.++. T Consensus 246 ~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~~~~----~~~~l~~----- 316 (537) T protein:vir:78 246 LGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDSTDK----LRQNIKA----- 316 (537) T ss_pred cccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCccchh----HHHHHhh----- Confidence 000 00147788888888887776666666666666665555544222111111 2222221 Q ss_pred ccCCceec-cC--CceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHH Q lcl|Aclame:pro 228 NSGRLMVL-PD--GFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIK 293 (383) Q Consensus 228 n~g~~~vl-~~--g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~ 293 (383) .+++.+ +. +++|...+.+.. ......+...+.|...-.+|. ......++.++-.. .... T Consensus 317 --~~~i~v~~d~~~v~~l~~~~~~~---~~e~~ld~L~~~I~~~s~~~~--~~~~~~gn~SGvAlk~~~~~l~~ka~~ke 389 (537) T protein:vir:78 317 --KKMIGVNGDNAGMEIQTVSIPYE---ARKAKMDIDVENIYRSGMGFN--STAVGDGNVTNVVIKSRYTLLAMKARKME 389 (537) T ss_pred --cCceeecCCCCceeEEEecCCHH---HHHHHHHHHHHHHHHhcCCCC--CccccccCCcHHHHHHHHhhHHHHHHHHH Confidence 123333 22 355544444332 223345555555654433331 11111222222110 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC----CceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCcc------ Q lcl|Aclame:pro 294 ATYLANLNSYVNPIVDELRLKMN----APDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL------ 363 (383) Q Consensus 294 ~~~~~tl~p~~~~i~~~l~~~l~----~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~------ 363 (383) ..|...|.-.++.|...++..-. ...+++.+..-+..|..+.++.+.++++.|+++...+.+.+++-.-+ T Consensus 390 ~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~ek~~ 469 (537) T protein:vir:78 390 TSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETLKLI 469 (537) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHHHHH Confidence 22333344444444444433211 12567777777888999999999999999999988887765321100 Q ss_pred ------------CC--c-cccc----cCCCCCCCC---------CCCC Q lcl|Aclame:pro 364 ------------PD--N-LPEF----KPLTNETKG---------GDDK 383 (383) Q Consensus 364 ------------~~--d-~~~~----~~~~~~~~g---------Gd~~ 383 (383) .. + .... ......++| +|+. T Consensus 470 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 517 (537) T protein:vir:78 470 AEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPN 517 (537) T ss_pred HHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCcc Confidence 00 0 0000 000000000 0000 No 218 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=92.33 E-value=0.012 Score=31.15 Aligned_cols=350 Identities=11% Similarity=0.019 Sum_probs=150.8 Q ss_pred Ccccchhcccc-c--cccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecc--hhhhh Q lcl|Aclame:pro 1 MGLLTPKNFSK-R--NAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT--ATLNR 75 (383) Q Consensus 1 Mg~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~--~~~~l 75 (383) ..+.+....+. + ..+.... +....+......... ...-+..+....+|+..++-+-.-|..+... ..... T Consensus 7 ~~~i~~~~~~~~r~~~l~~yy~-g~~~il~~~~~~~~~----~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~~~~~ 81 (429) T protein:vir:98 7 SELIQKHRSFNLSYSAYKQLYE-GDHAILQQKQKEQYK----PDNRLVVNFAKYIVDTFNGYFIGVPVQTSHENKQVSNY 81 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cccccccccccccCC----CcceeecchHHHHHHHHhhhhcccCceeecCChHHHHH Confidence 11111110000 0 0000000 000000000000000 0011234566777787777776667665322 22223 Q ss_pred hhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceEE---EEEEecCceEEEEc Q lcl|Aclame:pro 76 LESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIVY---TVLESNDRPKMVLR 146 (383) Q Consensus 76 ~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~ 146 (383) +.+-...-........+..+.+.+|.+|+++..+. ...-..+|..+..+.++. ...+ ++...+......+. T Consensus 82 l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~ 161 (429) T protein:vir:98 82 LELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKGGVLEGSYS 161 (429) T ss_pred HHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCCceEEEEEEEEecCceEEEEEE Confidence 33322222445566778888899999998875532 223334444443332211 0110 11011110000010 Q ss_pred --------------------------hhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE Q lcl|Aclame:pro 147 --------------------------QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGK 200 (383) Q Consensus 147 --------------------------~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~ 200 (383) .=.|+++++ ...|.|-++.+...++....+.....+..+..+.|-.+ T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-------~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~ 234 (429) T protein:vir:98 162 DASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE-------NEERQSLLASVVTLINAFNKAISEKANDVEYFADAYLK 234 (429) T ss_pred eCceEEEEEecCCceEecccccccCCccceEEecC-------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceee Confidence 112344432 12477888877777777666666666666777777766 Q ss_pred EEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc----CCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHh Q lcl|Aclame:pro 201 LTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP----DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDIL 276 (383) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~----~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~l 276 (383) ++ +...+++....++ .++++.++ .+.++..+.... ..+.+....+...+.|+..-++|..-. T Consensus 235 i~--g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~i~~~s~~p~~~~ 300 (429) T protein:vir:98 235 IL--GAELDDETLKSLR-----------DTRIINLKDTDAQQLTVEFLQKPD-ADATQEHLLDRLENLIFRTAMVANISD 300 (429) T ss_pred ee--cCCCCcchhhhHh-----------hCceeeccCCCCCCcceeEEeecC-CHHHHHHHHHHHHHHHHHHhCccccCc Confidence 55 3222322222111 11233332 122333333332 223445667788889999999874322 Q ss_pred ccccccccchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhcCC---ceeeeechhhhccCHHHHHHHH Q lcl|Aclame:pro 277 GGGTSTESQHSNIDQIKA--------------TYLANLNSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSILINQV 339 (383) Q Consensus 277 g~~~~~~~~~~~~e~~~~--------------~~~~tl~p~~~~i~~~l~~~l~~---~~~~fd~~~ll~~d~~~~~~~~ 339 (383) +. .++ .+.+..+. .|...+...++.+...++..-.. ..+++.+.+.+..|..+.++.+ T Consensus 301 ~~--~gn---~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~ 375 (429) T protein:vir:98 301 ES--FGT---ASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIA 375 (429) T ss_pred cc--ccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHH Confidence 11 122 22222221 11112222222222222111111 1356666777888999999999 Q ss_pred HHHHhCCCcCHHHHHHHhCCCCccCCccccccC-------CCCCCCCCCCC Q lcl|Aclame:pro 340 SNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKP-------LTNETKGGDDK 383 (383) Q Consensus 340 ~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~~-------~~~~~~gGd~~ 383 (383) .++ .|+++...+.++++.-+-+..+.-+... .....-++++. T Consensus 376 ~kl--~g~is~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 424 (429) T protein:vir:98 376 GNL--AGIVSEETQVGVLSIVENPQKEIERKNSDKSTLISRQAGGLNGQNT 424 (429) T ss_pred HHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCC Confidence 887 5899998888887543211111100000 00000011111 No 219 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=91.25 E-value=0.017 Score=30.32 Aligned_cols=364 Identities=10% Similarity=0.039 Sum_probs=142.4 Q ss_pred Ccccchhcccccc----ccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee--cchhhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRN----AKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE--NTATLN 74 (383) Q Consensus 1 Mg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~--~~~~~~ 74 (383) +.++++....+.. .+....+.. ............ ... .-+..+....+|+..++-+-.-|+.+. +..... T Consensus 21 ~~~i~~~~~~~~~r~~~~~~yy~g~~-~i~~~~~~~~~~-~~~--~ki~~n~~~~iv~~~~~~l~g~~~~~~~~d~~~~~ 96 (489) T protein:vir:99 21 KNYISRFKAEQLERLKELKRYYLGDN-NIKYRPAKTDKY-AAD--NRIASDFAKYITVFEQGYMLGVPVEYKNENKDLQA 96 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-cccccccccccc-CCc--ceeecchHHHHHHHHhhhhccCCceeecCChhHHH Confidence 2233222110000 000000000 000000000000 000 012234556677777766655565543 222333 Q ss_pred hhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec-------cceEEeecCcceeeeecCC---ceEE----EEEEec-C Q lcl|Aclame:pro 75 RLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ-------NLEHIPNSDVQINYLPGNM---GIVY----TVLESN-D 139 (383) Q Consensus 75 l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~-~ 139 (383) .+.+-...-....+...+......+|.+|..+... ...+..++|..+..+.++. ...+ +..... + T Consensus 97 ~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~ 176 (489) T protein:vir:99 97 AIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVIYDDTYQRNSLMAVHFYDIDYGSG 176 (489) T ss_pred HHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEEEcCCCCCceEEEEEEEEEecCCC Confidence 33332222244456677788888999999765421 1223334444443332211 1111 111000 0 Q ss_pred c---eEEEEchhh----------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 140 R---PKMVLRQDQ----------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNM 188 (383) Q Consensus 140 ~---~~~~~~~~~----------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~ 188 (383) . ....+.++. |+|+++ . ..|.|.++.+...++..+.+..... T Consensus 177 ~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n--~-----~~~~s~~~~v~~liDa~d~~~s~~~ 249 (489) T protein:vir:99 177 KRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYAN--N-----EERTGAYESVLDNIDAYDLSQSELA 249 (489) T ss_pred ceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeec--C-----CCCCCchhhhHHHHHHHHHHHHHHH Confidence 0 001112222 344432 1 1366666666666655544444444 Q ss_pred HHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc-------CcccCCceeccCC-------ceeEecccChhHHHHH Q lcl|Aclame:pro 189 SAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT-------GDNSGRLMVLPDG-------FDYTQLEMKTDVFKAL 254 (383) Q Consensus 189 ~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~n~g~~~vl~~g-------~~~~~l~~~~~~~~~l 254 (383) +.....+.|-.+++ +.....+........+..... +...++++.++.+ .+.+.+..... ...+ T Consensus 250 ~~~~~~~~~~l~i~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 326 (489) T protein:vir:99 250 NFQQDSVNALLVIA--GNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYD-TAGS 326 (489) T ss_pred HHHHHhhhhhhhhc--cCCcccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeeeecCC-hHHH Confidence 43444444443433 211111111111111111100 1112333443332 22222332211 2233 Q ss_pred HHHHHHHHHHHHHHhcCCHHHhccccccccchhHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCC------ Q lcl|Aclame:pro 255 ADNSAYSADQISKAFGVPSDILGGGTSTESQHSNI-----------DQIKATYLANLNSYVNPIVDELRLKMNA------ 317 (383) Q Consensus 255 ~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~-----------e~~~~~~~~tl~p~~~~i~~~l~~~l~~------ 317 (383) ....+...+.|+..-++|..-... ..++.++... +.....|...|...++.+...++..-.. T Consensus 327 ~~~~~~l~~~i~~~s~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~ 405 (489) T protein:vir:99 327 EAYKNRLVADILRFTFTPDTQDMK-FSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTYSL 405 (489) T ss_pred HHHHHHHHHHHHHHhCCccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccc Confidence 456677788899888887532211 1122221111 1111122233344444333333221111 Q ss_pred -ceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc----c-------ccccCCCCCCCC----CC Q lcl|Aclame:pro 318 -PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN----L-------PEFKPLTNETKG----GD 381 (383) Q Consensus 318 -~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d----~-------~~~~~~~~~~~g----Gd 381 (383) ..+.+.+++-+..|..+.++++.++. |+++...+.++++. +...| + ...........+ |+ T Consensus 406 ~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~--v~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~ 481 (489) T protein:vir:99 406 VNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNT--VTGVDAEAELKRLKEEADKKQSLPEPRLVGDASGQ 481 (489) T ss_pred cccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCC--CCchhHHHHHHHHHHHHHHHhccccccccCCCCCC Confidence 13566667777789999999999874 89999998887642 21111 1 000001111111 11 Q ss_pred CC Q lcl|Aclame:pro 382 DK 383 (383) Q Consensus 382 ~~ 383 (383) ++ T Consensus 482 ~~ 483 (489) T protein:vir:99 482 EE 483 (489) T ss_pred cC Confidence 11 No 220 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=90.72 E-value=0.019 Score=29.97 Aligned_cols=354 Identities=12% Similarity=0.055 Sum_probs=145.9 Q ss_pred Cc--ccchhcccccc--cc----ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEee--cc Q lcl|Aclame:pro 1 MG--LLTPKNFSKRN--AK----NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE--NT 70 (383) Q Consensus 1 Mg--~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~--~~ 70 (383) |. .+.++....+. .+ .....+............. ....+ +..+.....|+..++-+-.-|+.+. +. T Consensus 17 ~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~--~~~~k--i~~n~~~~ivd~~~~~l~g~~~~~~~~d~ 92 (452) T protein:vir:36 17 ITVEVVTKFMEKHKLEVARYEYLKNMYLGIMAIDDEPAKDSW--KPDNR--LAVNFTKYIVDTFTGYFNGIPVKKSHSDK 92 (452) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccccc--Cccce--eecchHHHHHHHHhhhhcccCceeecCCh Confidence 11 11111100000 00 0000000000000000000 00000 1223455556666665555565543 22 Q ss_pred hhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc---ceEEeecCcceeeeecCC---ceEE---EEEEecCce Q lcl|Aclame:pro 71 ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIVY---TVLESNDRP 141 (383) Q Consensus 71 ~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~ 141 (383) .....+.+-...-........+......+|.+|.++..+. ...-.++|..+..+.++. ...+ ++...++.. T Consensus 93 ~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~ 172 (452) T protein:vir:36 93 EILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMFMVYDDTVKQEPLFAVRYGVDEDKKL 172 (452) T ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceE Confidence 3333333333323445566777788889999998775532 223334444443332211 0111 111111111 Q ss_pred E-EEEchhh-------------------------eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 142 K-MVLRQDQ-------------------------MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQI 195 (383) Q Consensus 142 ~-~~~~~~~-------------------------vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~ 195 (383) . ..+..+. |+++++ ...|.|-++.....++....+.....+.+...+ T Consensus 173 ~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-------~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~ 245 (452) T protein:vir:36 173 QGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-------NEERMSIFESVISLVNAFNKAISEKANDVDYFS 245 (452) T ss_pred EEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 1 1112222 233321 124777777777777766666666666666666 Q ss_pred CcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-----CceeEecccChhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 196 NPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-----GFDYTQLEMKTDVFKALADNSAYSADQISKAFG 270 (383) Q Consensus 196 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-----g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fg 270 (383) .|-.+++ +...+++....++. ++++.+.. +.++..+...... ..+....+...+.|+..-+ T Consensus 246 ~p~~~~~--g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~I~~~s~ 311 (452) T protein:vir:36 246 DQYLTFL--GAAVEEEDLKNIRS-----------NRVINYYADGEGKNVDVKFLEKPDSD-SQTENLLDRLTKLIFQTTM 311 (452) T ss_pred CceeEee--cCCcCchhhhhhhh-----------cceEEecCCCCccCCcceeEeecCCH-HHHHHHHHHHHHHHHHHhC Confidence 6766554 33223222222111 12222221 2233333322222 3344667777888988888 Q ss_pred CCHHHhccccccccchhHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcC---CceeeeechhhhccCHHHHH Q lcl|Aclame:pro 271 VPSDILGGGTSTESQHSNID-----------QIKATYLANLNSYVNPIVDELRLKMN---APDLELDIKDMLDVDDSILI 336 (383) Q Consensus 271 Vp~~~lg~~~~~~~~~~~~e-----------~~~~~~~~tl~p~~~~i~~~l~~~l~---~~~~~fd~~~ll~~d~~~~~ 336 (383) +|..-.+ ..++.++...+ .....|...|...++.+..-++..-. ...+++.+.+-+..|..+.+ T Consensus 312 ~p~~~~~--~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~a 389 (452) T protein:vir:36 312 VANISDE--SFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEYTFTRNEPKDIKEQA 389 (452) T ss_pred ccccCcc--cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHH Confidence 8753222 11222221111 01112222333333333322221111 12456666677778999999 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCccCCcccc-----------------ccCCCCCCCCCCCC Q lcl|Aclame:pro 337 NQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE-----------------FKPLTNETKGGDDK 383 (383) Q Consensus 337 ~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~-----------------~~~~~~~~~gGd~~ 383 (383) +.+.++ .|+++..-+.++++.-.-+..++-+ .....+...+.|++ T Consensus 390 ~~~~k~--~g~iS~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (452) T protein:vir:36 390 ETANIL--MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVSETNE 451 (452) T ss_pred HHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCccccC Confidence 999887 5789998888877543211111100 00011111122222 No 221 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=86.87 E-value=0.043 Score=28.10 Aligned_cols=355 Identities=13% Similarity=0.118 Sum_probs=142.6 Q ss_pred CcccchhccccccccccccccchhhhhhhccCcccccccHHHHh--hhHHHHHHHHHHHHhhccce---eEee--c---- Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSAL--QNTNVYSVINRIASDVSSAH---FKTE--N---- 69 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~i~~ia~~ia~~~---~~v~--~---- 69 (383) |.+++.- +-......+. .-||..+ .......++...++ ....|+..-++ |-++| .++. . T Consensus 51 ~~~~~ng---~i~~v~~~~l--~~~f~np-d~~~~~i~~l~~y~yi~~~~v~ql~~l----i~~lp~l~y~i~~~~~~k~ 120 (525) T protein:vir:10 51 MDLCNNG---KIKTVNLDTL--QLWFNNP-DKYINNIVNLLTYYYIIDGNVFQLYDL----IFSLPPLDYQIKVLKRDKD 120 (525) T ss_pred HHhhcCC---ceeeeeHHHH--HhhhcCh-HHHHHHHHHHHHHhhhhcchHHHHHHH----HHhcCCcceeehhhhhccc Confidence 4444321 1000000000 0000000 00000011111111 11222332222 33333 2221 1 Q ss_pred --chhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEE----------------------eecCcceeeee Q lcl|Aclame:pro 70 --TATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHI----------------------PNSDVQINYLP 125 (383) Q Consensus 70 --~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~----------------------~~~~~~~~~~~ 125 (383) .....++..-..-.-..++-+.+...+...|...-...+....++ .++-....... T Consensus 121 ~~~~~s~~n~~l~k~i~hk~ltrdll~q~a~~gtlig~wlg~~~~py~~vf~~~kyvfp~~r~~g~~v~vid~~~f~~~~ 200 (525) T protein:vir:10 121 YKEDLSTINLYLEKKIQHKQLTRDLLVQLAHSGTLIGTWLGSKREPYFNVFNNLKYVFPYGRAKGKMVAVIDLQWFDEMS 200 (525) T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccCceeEeeecCCCCcchhhhhhhhhhccccccCCceEEEEehHHhhhhh Confidence 011111111111011112222222222223321110011111111 11100000000 Q ss_pred cC-----------------Cc--eEEEEEEecCceEEEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 GN-----------------MG--IVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKS 186 (383) Q Consensus 126 ~~-----------------~~--~~~~~~~~~~~~~~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~ 186 (383) +. .. ..|.....+.-....+|-+.++|.|.... .+.+.-|.|-+......+......... T Consensus 201 ~~~r~~~~~~lsp~i~~~~y~~~~~~~~~~~~~~r~i~LP~e~t~~lr~~tl-~rnqrlG~s~vtp~l~dI~hk~klrd~ 279 (525) T protein:vir:10 201 ELERKLTFENLSPLITENKYKKWKEYNGENEDALRYIMLPISKTLVARIHTL-SRNQRLGIPYGTQTLFDIQHKQKLRDL 279 (525) T ss_pred HHHHHHHHHhhchhhhhhhhhHHhhcccccchhheeeecccceeEEeeeccc-ccCcccCcchhhhHHHHHHHHHHHHHH Confidence 00 00 00000111112235788899999996543 333434888888888888777766666 Q ss_pred HHHHHhccCCcceEEEEcCcCC-----CHHHHHHHHHHHHHHhcC---cccCCceec--cCCceeE--e-----cccChh Q lcl|Aclame:pro 187 NMSAMENQINPAGKLTISNYLS-----DGKDLESAREEFEKANTG---DNSGRLMVL--PDGFDYT--Q-----LEMKTD 249 (383) Q Consensus 187 ~~~~~~ng~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g---~n~g~~~vl--~~g~~~~--~-----l~~~~~ 249 (383) ..+....=..|-.+++..++.. .+..+.++-+..+.+... +++ ++.++ +.=..++ . -+..++ T Consensus 280 EqsIA~kii~a~avLk~gg~~gn~mk~p~~~kqkil~gVk~aleK~~kdK~-Gi~vi~~Pdfa~~efp~ik~~~~glDg~ 358 (525) T protein:vir:10 280 EQSIADKIIKAMAVLKFRGKDDNDSKVKESAKRKVLAGVKRALEKGVKDKN-GIACIAMPDFATFEFPEIKNGDKTLDPK 358 (525) T ss_pred HHHHHHHhhhhheeeeeccccCccccCchHHHHHHHHHHHHHHhccccccc-CeEEEeccceeecccccccCcccCCCch Confidence 6666666666677777765322 222333444444444322 222 34442 3222222 1 222333 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCc----eeee Q lcl|Aclame:pro 250 VFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKM---NAP----DLEL 322 (383) Q Consensus 250 ~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l---~~~----~~~f 322 (383) .. +....+|-.++|++-.++++. +++...+. -....|..-+.-+++.|++..+..+ ++. .+.| T Consensus 359 K~-------d~I~~DI~~A~GlS~sL~nGd-ggNyAtas--lnld~fykkigVm~e~Iee~y~kL~d~Vl~~~k~~nyif 428 (525) T protein:vir:10 359 KY-------DSIDNDITNATGISQVLTNGT-KGNYASAK--LNLDVFYKKIGVMLEIIEEIYNQLIDIILGEEKGCNYIF 428 (525) T ss_pred hh-------hhhhhhhhhhhccceeeecCC-CCceeeee--eeHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCcceEE Confidence 22 333478999999999999864 34333322 2334455556667777775554322 332 4677 Q ss_pred echhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc------------------cccccCCCCCCCC--C-- Q lcl|Aclame:pro 323 DIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN------------------LPEFKPLTNETKG--G-- 380 (383) Q Consensus 323 d~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d------------------~~~~~~~~~~~~g--G-- 380 (383) +++.-...+.+.+.+.+-++.+.|+...--.. +.| +.++. +|+... +.+.| | T Consensus 429 nydkd~pi~~kkk~d~LIkL~d~g~s~k~vld-l~g---is~e~y~E~s~yEtE~lkl~EKi~pp~~~--~v~SGk~~n~ 502 (525) T protein:vir:10 429 QYNKDTPIEREKKLDTLIKLEAQGYSAKYVLD-ILG---ISSEEYFEESIYEIEKLKLREKIMPPLNT--NVLSGKDGND 502 (525) T ss_pred ecCCCchhhhhhhhhhhhhhhccchhhhhhhh-hhc---cCcchHHHHHHHHHHHHHHhhhccccccc--eeeecccccc Confidence 77776667888888888888888865432111 222 21111 011100 01111 0 Q ss_pred ------CCC Q lcl|Aclame:pro 381 ------DDK 383 (383) Q Consensus 381 ------d~~ 383 (383) |++ T Consensus 503 iG~P~~dd~ 511 (525) T protein:vir:10 503 IGSPKLDDS 511 (525) T ss_pred ccCCccCCC Confidence 111 No 222 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=81.61 E-value=0.084 Score=26.48 Aligned_cols=338 Identities=12% Similarity=0.095 Sum_probs=136.8 Q ss_pred Ccccchhccc-----cccccccccc-cchhhhhhhccCcccccccHHHHhhhHHHHHHH--------HHHHHhhccceeE Q lcl|Aclame:pro 1 MGLLTPKNFS-----KRNAKNMVYP-SNPAFFTTTVGGMQLSYVSALSALQNTNVYSVI--------NRIASDVSSAHFK 66 (383) Q Consensus 1 Mg~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i--------~~ia~~ia~~~~~ 66 (383) -.+|+.--.. ..+--+...| +.+ ||..-..... .......+.+++-+ +++-..+. T Consensus 47 ~~~~dst~~~a~~~Laa~l~~~ltpp~~~-WF~l~~~d~~-----~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~----- 115 (555) T protein:vir:17 47 PTPWQSVGSKGVNVLASKLMLSLFPVNTS-FFKLQINDAE-----IDNLGMDEQARSEIDLSLSRIERIVTQDIA----- 115 (555) T ss_pred cccccccHHHHHHHHHHHHHHhhcCCCCc-ccccccCHHH-----HhhccCCHHHHHHHHHHHHHHHHHHHHHHH----- Confidence 1112110000 0000001111 111 1111100000 00111112222222 22222221 Q ss_pred eecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCC------------------ Q lcl|Aclame:pro 67 TENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNM------------------ 128 (383) Q Consensus 67 v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 128 (383) +- +.+.-...++.+|...||+.+++..+....+|+..+.+..+..+. T Consensus 116 -----------~s----nf~~~~~~~~~~L~~~G~a~ly~~~~~~~~~pl~~y~v~~d~~G~vd~v~rk~~~t~~ql~~~ 180 (555) T protein:vir:17 116 -----------ES----SDRVHLEMAMKHLIVTGNALLYQGKKNLKLYPLDRFVVSRDGEGNVMEIVTEEQIDRSLLPEE 180 (555) T ss_pred -----------hc----CcHHHHHHHHHHHHhHCeEEEEecCCceeEEEcCeEEEeeCCCcCeeEEEeeeeecHHHHHHH Confidence 22 344455566677778888888766555555554432222211110 Q ss_pred -------------------------------------------------ceEEEEEEecCce------EEEEchhheEEe Q lcl|Aclame:pro 129 -------------------------------------------------GIVYTVLESNDRP------KMVLRQDQMLHF 153 (383) Q Consensus 129 -------------------------------------------------~~~~~~~~~~~~~------~~~~~~~~vih~ 153 (383) +..+++...++.. ...|..-..+.. T Consensus 181 fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~e~~~~~v~~~l~e~g~~e~P~i~~ 260 (555) T protein:vir:17 181 FQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSNDALVYTYVCRKDGQVKWHQECDGKVIPGSNSSAPYTHNPWIPL 260 (555) T ss_pred hhhccccchhhhhhhccccchhhhhhhhcccccCCCcceeEeecccccCCeeEEEEecCceeccccccccCcccCCeeee Confidence 0011111111110 001112234555 Q ss_pred cccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCce Q lcl|Aclame:pro 154 RLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLM 233 (383) Q Consensus 154 r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~ 233 (383) |+...++ ..||.||.+-+...+...+.+.+...........|..++...+ ...+... ..|. .+.+ T Consensus 261 Rw~~~~g--e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~lv~~~g-~~~~~~l----------~~~~--~g~v 325 (555) T protein:vir:17 261 RFNIVDG--EAYGRGRVEEFMGDLKSLEALSQAMVEGSAASAKVVFMVSPSA-TTKPQNL----------ALAA--NGAI 325 (555) T ss_pred eeeecCC--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccc-ccCccee----------ecCC--Ccee Confidence 5544443 3589999999999999999999999999888888887765333 3332221 1121 1233 Q ss_pred eccCCceeEecccC-hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 VLPDGFDYTQLEMK-TDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELR 312 (383) Q Consensus 234 vl~~g~~~~~l~~~-~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~ 312 (383) +.+..-.+.++... +.+++...+..+..+..|-.+|-+ ++..+.+..+..............|.|.+..+.++|- T Consensus 326 ~~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~aFm~----~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L 401 (555) T protein:vir:17 326 IQGRPDDVSVVQANKAADFRTVLEMIQKLEQRISDAFLM----LQVRQSERTTATEVQATVQELNEQIGGIYSNLTTELL 401 (555) T ss_pred ecCCcccceeeeccccchhhHHHHHHHHHHHHHHHHHhh----cCCCCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHH Confidence 33333445555533 456665556666677888888854 3334444444444333334444556666666655543 Q ss_pred hhc-------------CCc--------eeeeechhhhc-cCHHHHHHHHHHHHhCC-------CcCHHHHHH-HhCCCCc Q lcl|Aclame:pro 313 LKM-------------NAP--------DLELDIKDMLD-VDDSILINQVSNLAKSG-------VLGAEQAQF-ILTRSGF 362 (383) Q Consensus 313 ~~l-------------~~~--------~~~fd~~~ll~-~d~~~~~~~~~~~~~~G-------~~t~nE~R~-~~g~~p~ 362 (383) .-| +++ .+.--+..+.+ .+.+....++..+.+.+ .+..+++-+ +..--++ T Consensus 402 ~Pli~R~~~il~r~g~lP~~p~~~v~~~i~~~l~~l~r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv 481 (555) T protein:vir:17 402 QPYLARKLHLLQKQRKLPQLPKDLVQPTVVAGLWGVGRGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGI 481 (555) T ss_pred HHHHHHHHHHHHhCCCCCCCCHhhhccceeehHHHHHHHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCC Confidence 211 211 22222333333 23333444444443332 122222211 1111112 Q ss_pred cCCccccccCCC------------------------------CCCC-CCCCC Q lcl|Aclame:pro 363 LPDNLPEFKPLT------------------------------NETK-GGDDK 383 (383) Q Consensus 363 ~~~d~~~~~~~~------------------------------~~~~-gGd~~ 383 (383) ++.+..+..... ..++ +-.++ T Consensus 482 ~p~~ivrs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~ 533 (555) T protein:vir:17 482 DTLQLINSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQLIQQQQ 533 (555) T ss_pred ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhccccch Confidence 111110000000 0000 00000 No 223 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=80.81 E-value=0.091 Score=26.28 Aligned_cols=361 Identities=12% Similarity=0.056 Sum_probs=152.9 Q ss_pred Ccccchhcc--c----cccccccccccchhhh----hhhccCcccccccHHHHhh----hHHHHHHHHHHHHhhccceeE Q lcl|Aclame:pro 1 MGLLTPKNF--S----KRNAKNMVYPSNPAFF----TTTVGGMQLSYVSALSALQ----NTNVYSVINRIASDVSSAHFK 66 (383) Q Consensus 1 Mg~~~~~~~--~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~v~~~i~~ia~~ia~~~~~ 66 (383) |+.-.+-.. . -..-+.... +...+. .+.+....-+.-.-+..++ .+.+...++.+++.+-+-|.. T Consensus 1 m~V~~~hp~y~a~~~~W~~~rd~~~-G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~vf~k~p~ 79 (452) T protein:vir:94 1 MPIETKHPEYLAYENDWIDCRVASL-GQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGMVLDQPPV 79 (452) T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhc-ChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhchhhcCCce Confidence 553221000 0 000000000 000000 0000000000000112222 356677777777777666655 Q ss_pred eecch-hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccce------EEee--------cC------cce---e Q lcl|Aclame:pro 67 TENTA-TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLE------HIPN--------SD------VQI---N 122 (383) Q Consensus 67 v~~~~-~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~------~~~~--------~~------~~~---~ 122 (383) +.-.. ...++. =-...+-.+|.+.+....+.+|-+++++...... ++.+ +. +.. . T Consensus 80 ~~~p~~l~~~~~-D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~W~~~~~g~l~~v~lre~~ 158 (452) T protein:vir:94 80 ITHPDAMSKYFE-DQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILNWEEDEDGRLLMVVLREFY 158 (452) T ss_pred ecccHHHHHHHh-cccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcCccccccCCeeEEEEEEEE Confidence 43222 112221 1345788999999999999999999887653210 0000 00 000 0 Q ss_pred eee-cCC------ceEEEEEE-ecCceEE-EEc----------------h----hheEEecccCccccCccccCcHHHHH Q lcl|Aclame:pro 123 YLP-GNM------GIVYTVLE-SNDRPKM-VLR----------------Q----DQMLHFRLMPDPQYRYLIGRSPLESL 173 (383) Q Consensus 123 ~~~-~~~------~~~~~~~~-~~~~~~~-~~~----------------~----~~vih~r~~~~~~~~~~~G~spi~~~ 173 (383) ... +.+ ...|++.. ..+.... .+. . -..|=|-.+...+.....|.+|+..+ T Consensus 159 ~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~pPLl~L 238 (452) T protein:vir:94 159 TVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGVTMDYIPFFCITPSGLSMTPAKPPMIDI 238 (452) T ss_pred EEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCcccceeEEEEEcCCCCCCCCCccchHHH Confidence 001 110 01111111 0111110 000 0 01222222222222345689998766 Q ss_pred HHH-HHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccC-CceeEecccChhHH Q lcl|Aclame:pro 174 QNA-LNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPD-GFDYTQLEMKTDVF 251 (383) Q Consensus 174 ~~~-i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~-g~~~~~l~~~~~~~ 251 (383) +.. +.+.+....+... +...+.|-.++.-.+ +.+ ...-| ++.++.+++ |.++.-++.+.... T Consensus 239 A~ln~~hy~~~sd~~~~-l~~~~~P~l~~~g~~---~~~----------~i~iG--~~~~~~lpe~~~~~~yie~~g~~i 302 (452) T protein:vir:94 239 VDINYSHYRTSADLEHG-RHFTGLPTPWITGAE---SQS----------TMHIG--STKAWVIPEVAAKVGFLEFTGQGL 302 (452) T ss_pred HHHHHHHhcchhHHHHH-HHHcccceeEeecCc---CCC----------ceEec--ccccccCCCCCCcceEEccCchhH Confidence 664 4455555554444 445555655554222 111 11223 334677874 76666566555544 Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhc------CC--ce--e Q lcl|Aclame:pro 252 KALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LANLNSYVNPIVDELRLKM------NA--PD--L 320 (383) Q Consensus 252 ~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~-~~tl~p~~~~i~~~l~~~l------~~--~~--~ 320 (383) ....+.++...+++ ...|- .++-.......+. ........- ...|.-+..++++++++.| .+ .. + T Consensus 303 ~~~~~~l~~le~~m-~~~Ga--~ll~~~~~~~~s~-ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~a~w~g~~~~~~v 378 (452) T protein:vir:94 303 QSLEKALSEKQAQL-ASLSA--RLIDNSTRGSEAT-ETVKLRYMSETASLKSVTRAVEALLNKAYSCIMDMESMGGTLNI 378 (452) T ss_pred HHHHHHHHHHHHHH-HHHHH--HhhccCCCcchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCceEE Confidence 33334444443433 22222 3332111111111 111111111 2346667777888776544 12 22 4 Q ss_pred eeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCc-c----------ccccCCCCCCCCCCCC Q lcl|Aclame:pro 321 ELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN-L----------PEFKPLTNETKGGDDK 383 (383) Q Consensus 321 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d-~----------~~~~~~~~~~~gGd~~ 383 (383) +.+.+-.........++++-+++..|.++....++.+.+-++++.+ . +.......|..||++- T Consensus 379 ~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i~~E~~~~~~~~~~~~~~~~~~~ 452 (452) T protein:vir:94 379 KLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGVIPDPPAPEPSPSNTPPNPSSKA 452 (452) T ss_pred EeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHHHHHhhccCcccCCCCCCCccCC Confidence 4443333333223455666678999999999998888655554322 1 1111122344566666 No 224 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=61.65 E-value=0.35 Score=23.09 Aligned_cols=355 Identities=9% Similarity=0.017 Sum_probs=142.1 Q ss_pred Ccccchhcccc-c--cccccccccchhh---hhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhccceeEeecch--- Q lcl|Aclame:pro 1 MGLLTPKNFSK-R--NAKNMVYPSNPAF---FTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENTA--- 71 (383) Q Consensus 1 Mg~~~~~~~~~-~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~v~~~~--- 71 (383) -.++++...+. + +.+....+...-. .... .........+..-+.+.-..-.|+..++-+-+-|+...... T Consensus 7 ~~~i~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~-~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~~~~~~ 85 (451) T protein:vir:10 7 RAIISADAARRQEILQAKSYYYNKNDILKKGVVVQ-NRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFDIDNNKE 85 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccccccccc-ccccccccccccccccchHHHHHHhhhhheecccceeecCCcHH Confidence 11111100000 0 0000000000000 0000 00000000000112234556677777777766676543211 Q ss_pred hhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc-----------ceEEeecCcceeeeecCC---ce----EEE Q lcl|Aclame:pro 72 TLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-----------LEHIPNSDVQINYLPGNM---GI----VYT 133 (383) Q Consensus 72 ~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~----~~~ 133 (383) ...++..-.. -........+......+|.||.++..+. +....++|..+..+.++. .. .++ T Consensus 86 ~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~~~~~~ir~~ 164 (451) T protein:vir:10 86 LNEKVTDVLG-NEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIERELEAVIRYY 164 (451) T ss_pred HHHHHHHHhc-cCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCCceEEEEEEE Confidence 1222221111 1345566677788889999998765431 223334555554433221 11 111 Q ss_pred EEEec-Cc--------eEEEEchhheEEecccCc-------------ccc---------CccccCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 134 VLESN-DR--------PKMVLRQDQMLHFRLMPD-------------PQY---------RYLIGRSPLESLQNALNLDDK 182 (383) Q Consensus 134 ~~~~~-~~--------~~~~~~~~~vih~r~~~~-------------~~~---------~~~~G~spi~~~~~~i~~~~~ 182 (383) ....+ .+ ....+..+.+.+++.... .++ ....|.|-++.....++..+. T Consensus 165 ~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~d~e~v~~liDa~~~ 244 (451) T protein:vir:10 165 IQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKKQSDLSKYKKILDLYDR 244 (451) T ss_pred EeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCCCCchhhHHHHHHHHHH Confidence 11111 00 011222333333221000 000 011366777777777766655 Q ss_pred HHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceecc-------CCceeEecccChhHHHHHH Q lcl|Aclame:pro 183 ASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLP-------DGFDYTQLEMKTDVFKALA 255 (383) Q Consensus 183 ~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~-------~g~~~~~l~~~~~~~~~l~ 255 (383) +.....+.+...+.|..+++--+...+++... .+. ..+++.+. ++++|..-+.+. +... T Consensus 245 ~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~~-------~~~~i~~~~~~~~~~~~~~~l~~~~~~---~~~~ 310 (451) T protein:vir:10 245 VMSGFANDLEDIQQIIYILENFGGEDTSEFLK----ELK-------RYKTIKTETDSEGDSGGLKTMQIEIPT---EARK 310 (451) T ss_pred HHHHHHHHHHHhccceeeeecCCcccchhhHH----HHh-------hCCeEEecCcCCccCCcceEEeecCCH---HHHH Confidence 55555555555555655544222111112111 111 11233332 345554433322 3345 Q ss_pred HHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhcCCceee Q lcl|Aclame:pro 256 DNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKAT--------------YLANLNSYVNPIVDELRLKMNAPDLE 321 (383) Q Consensus 256 e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~--------------~~~tl~p~~~~i~~~l~~~l~~~~~~ 321 (383) ...+...+.|+..-++|.. .....+ ++...+.+.. |...|...++.+...++. .-...++ T Consensus 311 ~~~~~l~~~I~~~s~~p~~--~~~~~g---n~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~-~d~~~i~ 384 (451) T protein:vir:10 311 IILEILKKQIYESGQGLQQ--DTENFG---NASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGV-TDYKKIQ 384 (451) T ss_pred HHHHHHHHHHHHHhCcccc--cccccc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccee Confidence 6677778889999998842 111111 2222222211 112222222222222211 0112466 Q ss_pred eechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcc-----------ccccCCCCCCCCCC Q lcl|Aclame:pro 322 LDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-----------PEFKPLTNETKGGD 381 (383) Q Consensus 322 fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~-----------~~~~~~~~~~~gGd 381 (383) +.++.-+..|..+.++.+.++. |+++...+.++++.-.-+...+ .......+. =+| T Consensus 385 i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d~~~e~~~~~ee~~~~~~~~~~~~~~--~~~ 451 (451) T protein:vir:10 385 QTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDDVEEAEKLYLEEKKIQASKVSDDYNN--FTE 451 (451) T ss_pred EEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC--CCC Confidence 6667778889999999999985 7899988887764321110100 000000000 111 No 225 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=52.57 E-value=0.55 Score=22.00 Aligned_cols=356 Identities=12% Similarity=0.067 Sum_probs=142.2 Q ss_pred ccchhccccccccccccc----cchhh-------------h----hhhccCcc--cccccH--HHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 3 LLTPKNFSKRNAKNMVYP----SNPAF-------------F----TTTVGGMQ--LSYVSA--LSALQNTNVYSVINRIA 57 (383) Q Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~-------------~----~~~~~~~~--~~~~~~--~~~~~~~~v~~~i~~ia 57 (383) +-++-. .. .+...+ ..+.| - .+.+.... ...+.. ..+.-.+.+...++.++ T Consensus 1 m~~~~~---~~-v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~ 76 (513) T protein:vir:97 1 MADKDP---KS-PATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLS 76 (513) T ss_pred CCCCCC---CC-CCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHh Confidence 111100 00 000000 00000 0 00000000 000000 11222356677788888 Q ss_pred HhhccceeEeecc-hh---hhhhhCCC-ccCCHHHHHHHHHHHHHhcCCceEEEEecc---------------------- Q lcl|Aclame:pro 58 SDVSSAHFKTENT-AT---LNRLESPS-SLIGRFSFWQGALMQLCLSGNDYIPLVGQN---------------------- 110 (383) Q Consensus 58 ~~ia~~~~~v~~~-~~---~~l~~~PN-~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~---------------------- 110 (383) +.+.+-|..+... +. ..|+.... ...+-.+|.+.+....+.+|-+++++.... T Consensus 77 G~vf~k~p~~~~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~~~rP 156 (513) T protein:vir:97 77 GKPFSEPIKLNEDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRREGLRP 156 (513) T ss_pred hhhhhcCcccCcCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhhccCc Confidence 8777777766532 22 12333333 346889999999999999999999875421 Q ss_pred -ceEEeecC-----------------cce---eeeecCCceEE---EEEEecCceEE--E------------E-chh--- Q lcl|Aclame:pro 111 -LEHIPNSD-----------------VQI---NYLPGNMGIVY---TVLESNDRPKM--V------------L-RQD--- 148 (383) Q Consensus 111 -~~~~~~~~-----------------~~~---~~~~~~~~~~~---~~~~~~~~~~~--~------------~-~~~--- 148 (383) +.++.+.. +.. ....+..+... ++....+.... . . ... T Consensus 157 y~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~~~~~g~~~ 236 (513) T protein:vir:97 157 YWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWALADEWATG 236 (513) T ss_pred eEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCccccceEEecCCCCc Confidence 11111110 000 00011111110 00111111100 0 0 000 Q ss_pred -heEEecccCccccCccccCcHHHHHHHH-HHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 149 -QMLHFRLMPDPQYRYLIGRSPLESLQNA-LNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (383) Q Consensus 149 -~vih~r~~~~~~~~~~~G~spi~~~~~~-i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 226 (383) ..|-|-.+...+.....|.+|+..++.. +.+.+....+...+ ...+.|-.+++--+ + +..+ ...-| T Consensus 237 l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il-~~~~~P~l~~~G~~---~-~~~~-------~i~iG 304 (513) T protein:vir:97 237 LNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHIL-TVSRFPILACSGAS---G-EDSD-------PVVVG 304 (513) T ss_pred CCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHH-HhcccceeeeecCC---c-CCCC-------ceEee Confidence 0111111112222234688998766664 45555555544444 45555666654221 1 1111 11223 Q ss_pred cccCCceeccC-CceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH--H-HHHHH Q lcl|Aclame:pro 227 DNSGRLMVLPD-GFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY--L-ANLNS 302 (383) Q Consensus 227 ~n~g~~~vl~~-g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~--~-~tl~p 302 (383) . +.++.+++ |.++.-++.+...+....+.++...+++ ...|. .+|.... .+.+ + ++....+ . ..|.- T Consensus 305 ~--~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm-~~~Ga--~ll~~~~-~~~T-a--~a~~~~~~~~~S~L~~ 375 (513) T protein:vir:97 305 P--NKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQM-AGYGA--EFLKRKT-GGQT-A--TARALDSAEATSDLSA 375 (513) T ss_pred c--cccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHH-HHHHH--HhhccCC-cccc-H--HHHHHHHHHHHHHHHH Confidence 2 34667764 6666666665554433334445444444 33332 3443211 1111 1 2222222 2 24666 Q ss_pred HHHHHHHHHHhhc-------C-C-ceeeeechh--hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCC------ Q lcl|Aclame:pro 303 YVNPIVDELRLKM-------N-A-PDLELDIKD--MLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPD------ 365 (383) Q Consensus 303 ~~~~i~~~l~~~l-------~-~-~~~~fd~~~--ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~------ 365 (383) +..++++++++.| . . ...+|.++. ....-....++++.+++..|.++....++.+-+-++.+. T Consensus 376 ~a~~le~al~~~l~~~a~wlg~~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~~~ 455 (513) T protein:vir:97 376 MTGLFEDALAQALDITADWLRLGPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDEDE 455 (513) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCHHH Confidence 7778888877654 2 1 123333332 111111223455556666777766655555433222111 Q ss_pred ------------------ccccccCCCC---------CCCCCCCC Q lcl|Aclame:pro 366 ------------------NLPEFKPLTN---------ETKGGDDK 383 (383) Q Consensus 366 ------------------d~~~~~~~~~---------~~~gGd~~ 383 (383) |........+ +-+|||+. T Consensus 456 ~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (513) T protein:vir:97 456 DWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGG 500 (513) T ss_pred HHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCC Confidence 1111111111 11233333 No 226 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=48.99 E-value=0.65 Score=21.60 Aligned_cols=338 Identities=15% Similarity=0.079 Sum_probs=135.5 Q ss_pred Ccccchhcccccccc--------------------ccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAK--------------------NMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDV 60 (383) Q Consensus 1 Mg~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~i 60 (383) ..+.+-- ....... +...|..+ ||..............+ ......|..-++.+.+.+ T Consensus 40 ~~~~~~~-~~~~~~~~~~~dst~~~a~~~Las~l~~~ltP~~~-WFrl~~~d~~~~~~~~~-~~~~~~v~~~L~~ve~~~ 116 (522) T protein:vir:94 40 SLFPKES-DNSSTEYTTPWQAVGARCLNNLAAKLMLALFPQSP-WMRLTVSEYEAKTLSQD-SEAAARVDEGLAMVERVL 116 (522) T ss_pred cccCCCC-CcccccccccccccHHHHHHHHHHHHHhhcCCCCc-ccccccchhhhhccCcc-cchhHHHHHHHHHHHHHH Confidence 1111000 0000000 00111111 11111000000000000 001111222222222211 Q ss_pred ccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEecc------ceEEeecCcceeeeecCC------ Q lcl|Aclame:pro 61 SSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN------LEHIPNSDVQINYLPGNM------ 128 (383) Q Consensus 61 a~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~------~~~~~~~~~~~~~~~~~~------ 128 (383) ...+.+- +.+.-+..++.++..+||+.+++..+. ...+|+..+.+....... T Consensus 117 ------------~~~~~~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d~~G~vd~i~r 180 (522) T protein:vir:94 117 ------------MAYMETN----SFRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYVVQRDAFGNILQIVT 180 (522) T ss_pred ------------HHHHHhc----CcHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEEEeeCCCcCeEEEee Confidence 1112222 344555666777888899988865432 223444332222111000 Q ss_pred ---------------------------ceEEEEEEec-CceE---------E-------EEchhheEEecccCccccCcc Q lcl|Aclame:pro 129 ---------------------------GIVYTVLESN-DRPK---------M-------VLRQDQMLHFRLMPDPQYRYL 164 (383) Q Consensus 129 ---------------------------~~~~~~~~~~-~~~~---------~-------~~~~~~vih~r~~~~~~~~~~ 164 (383) ..+|-..... +... . .|..-..+..|+...++ .. T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~g--e~ 258 (522) T protein:vir:94 181 IDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPYIPVRMVRLDG--ED 258 (522) T ss_pred eeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCceeeeeeecCC--Cc Confidence 0011000000 0000 0 11122344455433333 35 Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEec Q lcl|Aclame:pro 165 IGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQL 244 (383) Q Consensus 165 ~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l 244 (383) ||.||.+-++..+...+.+.+...........|..++..+ ....++.. ..+.+ +.++-+..-++.++ T Consensus 259 YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~-g~~~~~~~----------~~~~~--g~~v~g~~~~v~~~ 325 (522) T protein:vir:94 259 YGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPN-GITQPRRL----------NKAAT--GEFVAGRVEDINFL 325 (522) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccc-ccccchhe----------eccCC--ceeecCCcccceee Confidence 8999999999999999999999999999999888665533 33333322 11211 12333323333333 Q ss_pred cc-ChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------- Q lcl|Aclame:pro 245 EM-KTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKM-------- 315 (383) Q Consensus 245 ~~-~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l-------- 315 (383) .. ++.+++...+..+..+.+|-.+|-+. .++..+.+..+..............|.|.+..+.++|-.-| T Consensus 326 ~~~~~~~~~~~~~~i~~~~~rI~~af~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il 403 (522) T protein:vir:94 326 QLTKGQDFTIAKSVADAIEQRLGWAFLLN--SAVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQL 403 (522) T ss_pred ecccccchhHHHHHHHHHHHHHHHHHhhh--hhccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH Confidence 32 23456655577777888899999664 34434445555554444444445567777766666653221 Q ss_pred -----CC----ceeeeechhhhcc-----CHHHHHHHHHHHHhCC------CcCHHHH-HHHhCCCCccCCccccccCCC Q lcl|Aclame:pro 316 -----NA----PDLELDIKDMLDV-----DDSILINQVSNLAKSG------VLGAEQA-QFILTRSGFLPDNLPEFKPLT 374 (383) Q Consensus 316 -----~~----~~~~fd~~~ll~~-----d~~~~~~~~~~~~~~G------~~t~nE~-R~~~g~~p~~~~d~~~~~~~~ 374 (383) ++ ..++.++...+.. +......++..+.+-+ -+..+++ +....--++++.. T Consensus 404 ~r~g~lP~~p~~~v~v~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~-------- 475 (522) T protein:vir:94 404 QSAGMIPDLPKEAVEPTVSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAG-------- 475 (522) T ss_pred HhcCCCCCCCcccEEeeEecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChhh-------- Confidence 11 1344444332211 2222222332221111 0111111 1111111121111 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 375 NETKGGDDK 383 (383) Q Consensus 375 ~~~~gGd~~ 383 (383) .++.-||. T Consensus 476 -ivr~~ee~ 483 (522) T protein:vir:94 476 -LLLTQDEK 483 (522) T ss_pred -ccCCHHHH Confidence 11211111 No 227 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=47.94 E-value=0.69 Score=21.48 Aligned_cols=326 Identities=12% Similarity=0.064 Sum_probs=130.3 Q ss_pred Cccc-chhccccccccc--cccc----cchh-h-hhhhccCccccc--ccHHHHhh----h----HHHHHHH----HHHH Q lcl|Aclame:pro 1 MGLL-TPKNFSKRNAKN--MVYP----SNPA-F-FTTTVGGMQLSY--VSALSALQ----N----TNVYSVI----NRIA 57 (383) Q Consensus 1 Mg~~-~~~~~~~~~~~~--~~~~----~~~~-~-~~~~~~~~~~~~--~~~~~~~~----~----~~v~~~i----~~ia 57 (383) +.+- +.--...+..+. ++.. ...+ . ...++.+.+.-. ++.....+ . ..|..-+ +++. T Consensus 33 ~~~~~~~~~~~~~~~~~~dstg~~a~~~Laa~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~ 112 (542) T protein:vir:78 33 YLLTEDGHASGGRLQQPYQSLGSKGVNALSSKLMLSLFPIQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVM 112 (542) T ss_pred ccCCCCCCcccccccccccchHHHHHHHHHHHHHHhhcCCCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHH Confidence 2111 110000000000 0000 0000 0 001111111110 11111100 1 1122222 2222 Q ss_pred HhhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecC---------- Q lcl|Aclame:pro 58 SDVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGN---------- 127 (383) Q Consensus 58 ~~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~---------- 127 (383) ..+. +- +.+.-+..++.++..+|||.+++..+....+|+..+.+...... T Consensus 113 ~~l~----------------~s----nf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~pl~~y~v~~d~~G~vd~v~r~~~ 172 (542) T protein:vir:78 113 QQIA----------------ES----SDRVQLTAAMKHLIVTGNVLVFAGKKTLKVYPLDRYVIERDGDGNVIEIITREL 172 (542) T ss_pred HHHH----------------hc----CcHHHHHHHHHHHHhhCeEEEEecCCCceEEecceeEEeeCCCCCeEEEeeeee Confidence 2222 11 34445556677777888888876655555454443222221100 Q ss_pred -----------------------------------------Cc----------eEEEEE-EecCce------EEEEchhh Q lcl|Aclame:pro 128 -----------------------------------------MG----------IVYTVL-ESNDRP------KMVLRQDQ 149 (383) Q Consensus 128 -----------------------------------------~~----------~~~~~~-~~~~~~------~~~~~~~~ 149 (383) +. ..++++ ..++.. ...|..-. T Consensus 173 ~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~~~~~~~~~~~s~~~e~~g~~v~~~~~e~g~~~~P 252 (542) T protein:vir:78 173 VDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVFTCCKLVDGQHRWHQECDGKEIKGSRSSSPLKHSP 252 (542) T ss_pred cCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCccccccccCCCeEEEEEEeccccccccccccccccCC Confidence 00 001111 111110 01121223 Q ss_pred eEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 150 MLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNS 229 (383) Q Consensus 150 vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~ 229 (383) .+-.|+...++ ..||.||..-++..+...+.+.+...........|..++..++ ..++... ..+.+ T Consensus 253 ~i~~Rw~~~~g--e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~pp~lv~~~g-~~~~~~~----------~~~~~- 318 (542) T protein:vir:78 253 WLPLRFNVVDG--ESYGRGRVEEFFGDLSSLDALTRSLIEGSAAAAKVVFMVSPSA-TTKPQSL----------ARAGT- 318 (542) T ss_pred ceeeeeeecCC--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccc-ccchhhc----------ccCCC- Confidence 34444433333 3589999999999999999999999999998888886654332 3333221 11211 Q ss_pred CCceeccCCceeEeccc-ChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 230 GRLMVLPDGFDYTQLEM-KTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIV 308 (383) Q Consensus 230 g~~~vl~~g~~~~~l~~-~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~ 308 (383) +.++-+.+-++.++.+ ++.+++...+..+..+.+|-.+|-+ ....+.+..+..............|.|.+..+. T Consensus 319 -g~iv~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aFl~----~~~~d~~rvTAtEV~~r~~E~~~~LG~v~~rl~ 393 (542) T protein:vir:78 319 -GAIIQGRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAFLI----LNVRQSERTTATEVREVQMELDRQLSGIYGSLT 393 (542) T ss_pred -ceeecCCccceeeeecccccchhHHHHHHHHHHHHHHHHhcc----cccCCcccccHHHHHHHHHHHHHHhhHHHHHHH Confidence 1233333344555543 3446665567778888889888854 233334444444443444444556777777776 Q ss_pred HHHHhhc-------------CCc----eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccccc Q lcl|Aclame:pro 309 DELRLKM-------------NAP----DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK 371 (383) Q Consensus 309 ~~l~~~l-------------~~~----~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~~ 371 (383) ++|-.-| +.+ -++..+...+. ...|..-+..+.+ -+-++..+ . .+... . T Consensus 394 ~E~L~Pli~R~~~il~r~g~lP~~p~~lv~~~~~s~La--~~~r~~~~~~l~~-~~~~i~~~---~-----~p~~l---~ 459 (542) T protein:vir:78 394 VELLTPYLNRKLHLMQRSKQLPSLPKGLVMPTVVAGLG--GVGRGEDRAALIE-FMQTVGQA---M-----GPEAL---Q 459 (542) T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCchhceeeeeechHH--HHHHHHHHHHHHH-HHHHHHHh---c-----CChhH---H Confidence 6643222 111 23333332221 1111111111111 00011111 1 00000 0 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 372 PLTNETKGGDDK 383 (383) Q Consensus 372 ~~~~~~~gGd~~ 383 (383) ... ..|+= T Consensus 460 ~~i----d~d~~ 467 (542) T protein:vir:78 460 QFI----DPTEF 467 (542) T ss_pred hcC----CHHHH Confidence 000 11111 No 228 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=40.68 E-value=0.96 Score=20.68 Aligned_cols=349 Identities=15% Similarity=0.077 Sum_probs=144.6 Q ss_pred Ccccchhccccccccc----------cccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhcc------ce Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN----------MVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSS------AH 64 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~------~~ 64 (383) |.+-.++-..+..... .+.|+.. ...+......-.....+ .++.-.|++.+|+.+.+ -| T Consensus 1 m~~~~r~~~L~~~R~~~e~~w~e~~~~tlP~~~----~~~~~~~~~~~~~~~~~-dstg~~a~~~LAa~l~~~ltpp~~~ 75 (522) T protein:vir:10 1 MKARERYNQLTTARQMFLDKAVECSELTLPYLI----DDDISSRPNHKSLTVPW-QSVGAKCCVTLAAKLMLAVLPPQTS 75 (522) T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhhhccc----CCCCCCCcccccccccc-cchHHHHHHHHHHHHHHhhcCCCCc Confidence 8766554222211111 1111110 00000000000001122 34455566666665533 24 Q ss_pred eEeecchh---------------hhhh-------hCCCccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCccee Q lcl|Aclame:pro 65 FKTENTAT---------------LNRL-------ESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQIN 122 (383) Q Consensus 65 ~~v~~~~~---------------~~l~-------~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~ 122 (383) |.-..... ...+ ..--..-+.+.-+..++.++...|||.+++..+....+|+..+.+. T Consensus 76 WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~~~~~~~~pl~~y~v~ 155 (522) T protein:vir:10 76 FFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALIFMGKDGLKTFPLTRYVIN 155 (522) T ss_pred cccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeEEEcCCCceEEEcceEEEe Confidence 42111000 0000 0000112344555667788889999998876665555554433222 Q ss_pred eeecCC-------------------------------------ceEEEEEEe-cC--ceEE----------------EEc Q lcl|Aclame:pro 123 YLPGNM-------------------------------------GIVYTVLES-ND--RPKM----------------VLR 146 (383) Q Consensus 123 ~~~~~~-------------------------------------~~~~~~~~~-~~--~~~~----------------~~~ 146 (383) .+..+. ..+|..... .. .... .+. T Consensus 156 ~d~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 235 (522) T protein:vir:10 156 RDGDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYVKLDKSSGRWVWHQEAFDKIIPDSRSTAPKN 235 (522) T ss_pred eCCCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEEEeeccCCceEEEEccCCccccccccccccc Confidence 211100 001100000 00 0000 000 Q ss_pred hhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (383) Q Consensus 147 ~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 226 (383) .-..+-.|+...++ ..||.||..-+...+...+.+.+...........|..++...+ ..++... ..| T Consensus 236 ~~P~~~~Rw~~~~g--e~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~-~~~~~~l----------~~~ 302 (522) T protein:vir:10 236 ASPWLPLRFNTVDG--EDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSS-TTKPATI----------AKA 302 (522) T ss_pred cCCceeeeeeecCC--CccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeecccc-ccccccc----------cCC Confidence 11122233322232 3589999999999999999999999999888888886654333 3332221 112 Q ss_pred cccCCceeccCCceeEecccC-hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 227 DNSGRLMVLPDGFDYTQLEMK-TDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVN 305 (383) Q Consensus 227 ~n~g~~~vl~~g~~~~~l~~~-~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~ 305 (383) .+ +.++.+..-.+.++... ..+++...+..+..+..|..+|- ++...+.+..+..............|.|.+. T Consensus 303 ~~--~~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aFl----~~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~ 376 (522) T protein:vir:10 303 GN--GAIVQGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAFL----VMNVRNAERVTAEEVRLTQLELEQQLGGIFS 376 (522) T ss_pred CC--cceecCCCccceeecccccccchHHHHHHHHHHHHHHHHHh----hccCCCCCCCCHHHHHHHHHHHHHHhhHHHH Confidence 21 23333333334444332 45666666777888888988883 2333344444544444444444455666666 Q ss_pred HHHHHHHhhc-------------CC---cee----eee-chhhhcc-CHHHHHHHHHHHHhC-C------CcCHHH-HHH Q lcl|Aclame:pro 306 PIVDELRLKM-------------NA---PDL----ELD-IKDMLDV-DDSILINQVSNLAKS-G------VLGAEQ-AQF 355 (383) Q Consensus 306 ~i~~~l~~~l-------------~~---~~~----~fd-~~~ll~~-d~~~~~~~~~~~~~~-G------~~t~nE-~R~ 355 (383) .+.++|-.-| +. ..+ +.. +++|-+. +.+....++..+-.. | .+..++ +|. T Consensus 377 rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~v~~is~Laraq~~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~ 456 (522) T protein:vir:10 377 LLVIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTIVAGVNALGRGQDRESLTAFVGTIAQTLGPEALMQYLNPLEAIKR 456 (522) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhhCchhhhhcCCHHHHHHH Confidence 6655543211 11 111 111 1122111 222222222222110 0 112222 122 Q ss_pred HhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 356 ILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 356 ~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) ....-++|..+. ++. +|| T Consensus 457 ~a~~~Gvp~~~i---------vrt-~ee 474 (522) T protein:vir:10 457 LAAAQGIDVLNL---------VKT-EQQ 474 (522) T ss_pred HHHHhCCChhhh---------cCC-HHH Confidence 211112211111 111 222 No 229 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=40.04 E-value=0.99 Score=20.61 Aligned_cols=364 Identities=11% Similarity=0.032 Sum_probs=149.3 Q ss_pred Ccccchhccccccccc---------cccccchhhh----hhhcc--Cccccccc---HHHHhh----hHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPKNFSKRNAKN---------MVYPSNPAFF----TTTVG--GMQLSYVS---ALSALQ----NTNVYSVINRIAS 58 (383) Q Consensus 1 Mg~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~--~~~~~~~~---~~~~~~----~~~v~~~i~~ia~ 58 (383) |-=.+. +...-.. ....+...+. .+.+. ..+.+.-+ -+..++ -+++.+.++.+.+ T Consensus 1 m~~V~~---~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~l~G 77 (501) T protein:vir:95 1 MPNVSF---IRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFGLVG 77 (501) T ss_pred CCCCCC---CCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHHHhh Confidence 431110 0000000 0000000000 00000 00000000 111222 2445555555555 Q ss_pred hhccceeEeec-chhhhhhhCCC-ccCCHHHHHHHHHHHHHhcCCceEEEEecc--------------------ceEEee Q lcl|Aclame:pro 59 DVSSAHFKTEN-TATLNRLESPS-SLIGRFSFWQGALMQLCLSGNDYIPLVGQN--------------------LEHIPN 116 (383) Q Consensus 59 ~ia~~~~~v~~-~~~~~l~~~PN-~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~--------------------~~~~~~ 116 (383) .+-.-|..+.- .....|..... ...+-.+|.+.+....+.+|-+++++.... +.++.+ T Consensus 78 ~vf~k~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~rPy~~~~~~ 157 (501) T protein:vir:95 78 QVFMRDPVVKVPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRIRPTLYVYSP 157 (501) T ss_pred hhhcCCcceeCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccCCcEEEEecH Confidence 55544443421 11223333332 245889999999999999999999875421 111111 Q ss_pred cC-----------------ccee---eeecC-----CceEEEEEEec--CceEEE-E----------------------- Q lcl|Aclame:pro 117 SD-----------------VQIN---YLPGN-----MGIVYTVLESN--DRPKMV-L----------------------- 145 (383) Q Consensus 117 ~~-----------------~~~~---~~~~~-----~~~~~~~~~~~--~~~~~~-~----------------------- 145 (383) .. +... ...++ ....|++...+ +...+. + T Consensus 158 ~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~ 237 (501) T protein:vir:95 158 TEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIPKGNYQQYVV 237 (501) T ss_pred hhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceecCCcccccce Confidence 00 0000 00011 00011111111 100000 0 Q ss_pred --c------hhheEEecccCccccCccccCcHHHHHHHH-HHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHH Q lcl|Aclame:pro 146 --R------QDQMLHFRLMPDPQYRYLIGRSPLESLQNA-LNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESA 216 (383) Q Consensus 146 --~------~~~vih~r~~~~~~~~~~~G~spi~~~~~~-i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~ 216 (383) + .-.+|=|-.+...+.....|.+|+..++.. +.+.+....+.. .+...+.|-.+++-.+ + +..+.. T Consensus 238 ~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~-~l~~~~~P~l~i~G~~---~-~~~~~~ 312 (501) T protein:vir:95 238 YKPTDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSADYEE-SCYIVGQPTPVLIGLT---E-EWVTNV 312 (501) T ss_pred eeeeccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhHHHH-HHHHcccceeeeeCCc---c-cccccC Confidence 0 001111222222222234578888766654 344444444333 3455555666654222 1 111110 Q ss_pred HHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHH Q lcl|Aclame:pro 217 REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY 296 (383) Q Consensus 217 ~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~ 296 (383) .+ ....-| ++..+.++.|.++.-++.++.-+. .+.++...+++..+ | ..++.... .+. .+........- T Consensus 313 ~~--~~i~~G--~~~~~~lP~~~~~~~ie~~~~~i~--~~~l~~l~~~m~~~-G--a~ll~~~~-~~~-Ta~~~~~~~~~ 381 (501) T protein:vir:95 313 LK--GSVNFG--SRGGIPLPVGADAKLLQASENTML--KEAMDTKERQMVAL-G--AKLVEQKE-VQR-TATEAELEAAS 381 (501) T ss_pred CC--Cceeec--ccccccCCCCCceeEEecChhhHH--HHHHHHHHHHHHHH-H--HhhccCCc-cch-hHHHHHHHHHH Confidence 00 011112 234677888877777777665543 24444444444332 3 23442211 111 11111111111 Q ss_pred HH-HHHHHHHHHHHHHHhhc-------C--Cc--eeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccC Q lcl|Aclame:pro 297 LA-NLNSYVNPIVDELRLKM-------N--AP--DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLP 364 (383) Q Consensus 297 ~~-tl~p~~~~i~~~l~~~l-------~--~~--~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~ 364 (383) .+ .|.-+..+++++++..| . .. .|+++.+-.........++++.+++..|.++..+.++.+-+-.+++ T Consensus 382 ~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~~ 461 (501) T protein:vir:95 382 EGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVAT 461 (501) T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCC Confidence 22 36667778888877644 1 12 2444333222222233456677889999999999998887777765 Q ss_pred Ccccc-----------------ccCCCCCCCCCCCC Q lcl|Aclame:pro 365 DNLPE-----------------FKPLTNETKGGDDK 383 (383) Q Consensus 365 ~d~~~-----------------~~~~~~~~~gGd~~ 383 (383) .+... ......+..||||= T Consensus 462 ~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~~ 497 (501) T protein:vir:95 462 EDDSKAKEKIAKDTAEAMALATPANVPGDGSGGDNV 497 (501) T ss_pred hhHHHHHHHHHhhhcCcccccccCCCCCCCcccccc Confidence 43211 00111123466663 No 230 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=31.67 E-value=1.5 Score=19.65 Aligned_cols=335 Identities=9% Similarity=-0.007 Sum_probs=128.7 Q ss_pred Cc-ccchhccccccccc--ccccc----chh-h-hhhhccCcccccc--cH---HHHhhhHHHHH--------HHHHHHH Q lcl|Aclame:pro 1 MG-LLTPKNFSKRNAKN--MVYPS----NPA-F-FTTTVGGMQLSYV--SA---LSALQNTNVYS--------VINRIAS 58 (383) Q Consensus 1 Mg-~~~~~~~~~~~~~~--~~~~~----~~~-~-~~~~~~~~~~~~~--~~---~~~~~~~~v~~--------~i~~ia~ 58 (383) +- +|.+-...+...+. ++... ..+ . ...++.+.+.-.+ +. +.....+..++ |-+++-. T Consensus 41 lP~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~ 120 (515) T protein:vir:70 41 LPYLMNNKGDNETSQNGWQGVGAQATNHLANKLAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMK 120 (515) T ss_pred cccccCCCCCcccccccccchHHHHHHHHHHHHHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHH Confidence 11 11110011110000 00000 000 0 0001111111000 00 01111112222 2222222 Q ss_pred hhccceeEeecchhhhhhhCCCccCCHHHHHHHHHHHHHhcCCceEEEEec-cceEEeecCcceeee------------- Q lcl|Aclame:pro 59 DVSSAHFKTENTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ-NLEHIPNSDVQINYL------------- 124 (383) Q Consensus 59 ~ia~~~~~v~~~~~~~l~~~PN~~~s~~~f~~~~~~~l~l~G~a~~~~~~~-~~~~~~~~~~~~~~~------------- 124 (383) .++.. +.+.-+..++.++...|||.+++... ....+|+..+.+..+ T Consensus 121 ~l~~s--------------------nf~~~~~~~~~~L~~~G~a~l~~d~~~~~~~~pl~~y~v~~d~~G~v~~i~rr~~ 180 (515) T protein:vir:70 121 ALEQR--------------------QFRPAIVEVFKHLIVAGNCLLYKPSKGAMSAVPMHHYVVNRDTNGDLMDVILLQE 180 (515) T ss_pred HHHhc--------------------CchHHHHHHHHHHHhHCeEEEEEeCCCCeEEEEcCeEEEeeCCCcCeeEEEeeee Confidence 22221 33444455556666778777665322 122233222111111 Q ss_pred ------------------------------------ecCCceEEEEEEecCceE-----EEEchhheEEecccCccccCc Q lcl|Aclame:pro 125 ------------------------------------PGNMGIVYTVLESNDRPK-----MVLRQDQMLHFRLMPDPQYRY 163 (383) Q Consensus 125 ------------------------------------~~~~~~~~~~~~~~~~~~-----~~~~~~~vih~r~~~~~~~~~ 163 (383) ....+...++...++... +.|..-..+-.|+...++ . T Consensus 181 ~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v~~~~~~~~~~~~e~d~~~~~~es~y~~~e~P~~~~Rw~~~~g--e 258 (515) T protein:vir:70 181 KALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHAQYAGEGFWKINQSADDIPVGKESRIKSEKLPFIPLTWKRSYG--E 258 (515) T ss_pred ccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEEEecCCCceEEEEecCceeeccccccccccCCceeeeeeecCC--C Confidence 000110111111111100 001112233344433333 3 Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEe Q lcl|Aclame:pro 164 LIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQ 243 (383) Q Consensus 164 ~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~ 243 (383) .||.||..-++..+...+.+.+.......-...|..++...+ ..++... ..|.+ +.++-+..-.+.+ T Consensus 259 ~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~p~~lv~~~g-~~~~~~l----------~~~~~--g~iv~g~~~~v~~ 325 (515) T protein:vir:70 259 DWGRPLAEDYSGDLFVIQFLSEAMARGAALMADIKYLIRPGS-QTDVDHF----------VNSGT--GEVITGVAEDIHI 325 (515) T ss_pred CcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeeeCccc-ccchhhc----------cccCC--ceeecCCccccee Confidence 589999999999999999999999988888888887764332 2332221 11222 1233333344555 Q ss_pred cccC-hhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------- Q lcl|Aclame:pro 244 LEMK-TDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLKM------- 315 (383) Q Consensus 244 l~~~-~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l------- 315 (383) ++.. ..+++...+..+..+.+|-.+|=+.. +...++...+..............|.|.+..+.++|-.-| T Consensus 326 ~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~--l~~rd~~rvTAtEV~~r~~E~~~~LGpv~srL~~Ell~Pli~r~~~~ 403 (515) T protein:vir:70 326 VQLGKYADLTPISAVLEVYTRRIGVIFMMET--MTRRDAERVTAVEIQRDALEIEQNMGGVYSLFAMTMQTPIAMWGLQE 403 (515) T ss_pred eecCcccchhHHHHHHHHHHHHHHHHHhhhh--hhccCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh Confidence 5543 35666656777888889988886643 3333444445544444445555678888887777764333 Q ss_pred -CCc----eeeee----chhhhcc-CHHHHHHHHHHHHhC--C-------CcCHHH-HHHHhCCCCccCCccccccCCCC Q lcl|Aclame:pro 316 -NAP----DLELD----IKDMLDV-DDSILINQVSNLAKS--G-------VLGAEQ-AQFILTRSGFLPDNLPEFKPLTN 375 (383) Q Consensus 316 -~~~----~~~fd----~~~ll~~-d~~~~~~~~~~~~~~--G-------~~t~nE-~R~~~g~~p~~~~d~~~~~~~~~ 375 (383) +.+ .++.+ +..+.+. +......++. .+.. + .+..++ +|...+..++|. . T Consensus 404 ~~p~~P~~~v~~~~vs~l~~L~r~q~~~~i~~~~q-~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~----------~ 472 (515) T protein:vir:70 404 AGDSFTSELVDPVIVTGIEALGRMAELDKLANFAQ-YMSLPQTWPEPAQRAIRWGDYMDWVRGQISAEL----------P 472 (515) T ss_pred hCCCCChhhcccceehhHHHHHHHHHHHHHHHHHH-HHHHHhccChhHHhhCCHHHHHHHHHHHhCCCc----------c Confidence 111 11111 1122111 1111111111 1110 0 122222 111111111110 0 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 376 ETKGGDDK 383 (383) Q Consensus 376 ~~~gGd~~ 383 (383) -++..+|- T Consensus 473 ~~rs~eev 480 (515) T protein:vir:70 473 FLKSEEEM 480 (515) T ss_pred ccCCHHHH Confidence 11111111 No 231 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=29.52 E-value=1.7 Score=19.39 Aligned_cols=332 Identities=11% Similarity=0.008 Sum_probs=99.0 Q ss_pred Ccccchhcccc-ccccccccccchhhhhhhccCcc--------cccccHHHHhh------hHHH---HH-HHHHHHHhhc Q lcl|Aclame:pro 1 MGLLTPKNFSK-RNAKNMVYPSNPAFFTTTVGGMQ--------LSYVSALSALQ------NTNV---YS-VINRIASDVS 61 (383) Q Consensus 1 Mg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~v---~~-~i~~ia~~ia 61 (383) .|+..--+... ......+.......+..+..... ...+++..++- +..+ ++ +..-+++.++ T Consensus 155 ~~iv~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~~dps~~~~~~~f~~~r~t~~t~~~l~~ 234 (641) T protein:vir:94 155 VSTYRLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVWLDTSGGKNTGTFVRLRHTREELHELVT 234 (641) T ss_pred ceEEEeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhheeecCCCCcccccceehhhhHHHHHHHHh Confidence 22221100000 00000000111111111100000 00000000000 0000 11 1111111111 Q ss_pred cceeEeecchhhhhhhCC---CccCCHHHHHHHHHHHHHhcCCceEEEEeccceEEeecCcceeeeecCCceEE-EEEEe Q lcl|Aclame:pro 62 SAHFKTENTATLNRLESP---SSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVY-TVLES 137 (383) Q Consensus 62 ~~~~~v~~~~~~~l~~~P---N~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 137 (383) . .. + +.+.+-..+ +....+ + ...++...+..-. .-.+.|. .+..++.... ++... T Consensus 235 e-g~--~--~~d~v~~~~~~~~~~~~~-d----~~~d~~~~~~~~~----~~~e~~g-------d~~~d~~~~~~~~~~~ 293 (641) T protein:vir:94 235 S-GY--Y--DLDLTQVEQYVDYKFADP-D----TPKDVNGTDTSGW----DIIEYYG-------PLLVEGVQFWCVHAVF 293 (641) T ss_pred c-CC--C--Chhhcchhhccccccccc-c----ccccccccccccc----ceeeeee-------eeccCCCceeeEEEEE Confidence 1 00 0 000000000 000000 0 0000000000000 0000000 0001111111 11111 Q ss_pred cCceE------EEEchhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHH Q lcl|Aclame:pro 138 NDRPK------MVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGK 211 (383) Q Consensus 138 ~~~~~------~~~~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~ 211 (383) .++.- ..+.....+++|+...++ ..||.||...+...+...+.+.+.......-...|..++...+. ..++ T Consensus 294 ~g~~il~~~~~~~~d~~Pf~~~r~~~~~~--~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~-~~~~ 370 (641) T protein:vir:94 294 YGKQLIRLSDSKYWCGSPFVTTTLLPDRD--SVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGI-LKRE 370 (641) T ss_pred eCCEEeecccccccCcCCeEEecceecCC--cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeeccccc-cccc Confidence 12111 112233566777655443 47999999999999999999998888877777777766554332 2332 Q ss_pred HHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccc--cccccchhHH Q lcl|Aclame:pro 212 DLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGG--TSTESQHSNI 289 (383) Q Consensus 212 ~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~--~~~~~~~~~~ 289 (383) ..+ .+-|+++..+....+.++.....+.+......+.....|-..|++...+-+.. .+...+.+.. T Consensus 371 ~l~------------~~PG~ii~~~~~~~v~pl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV 438 (641) T protein:vir:94 371 DVK------------AKPGAVFKVAQHGSLQPIDMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEI 438 (641) T ss_pred eee------------ccCCcceeeCCCCcceeecCCccccchhHHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHH Confidence 221 11234555554445666543322222111233444456777888865432221 1122233333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCcccc Q lcl|Aclame:pro 290 DQIKATYLANLNSYVNPIVDELRLKMNAPDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE 369 (383) Q Consensus 290 e~~~~~~~~tl~p~~~~i~~~l~~~l~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~ 369 (383) .+........|.++++.+++++-.-|+..-+......++..+. .... ++--..-|+.|.++.++-. T Consensus 439 ~~~~~e~~~~l~~i~r~l~~e~l~pll~~~~~~~~~~~~~p~i---~R~~-----------~~~~~~~~~~~~~p~~L~~ 504 (641) T protein:vir:94 439 QGVRDAGGNRLSSVHTHIEDSSTLPLLNKVFSLLQQFYVTPET---IRMY-----------VPEEQMDGFFEVSPEYLHY 504 (641) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh---hhhh-----------chhhhcccCCCCCccceee Confidence 2222222223444444444433222222111100000000000 0000 0000000111111111100 Q ss_pred --------------------------ccCCCCCCCCCCCC Q lcl|Aclame:pro 370 --------------------------FKPLTNETKGGDDK 383 (383) Q Consensus 370 --------------------------~~~~~~~~~gGd~~ 383 (383) ......| +-+|.- T Consensus 505 ~~~iv~l~~~q~~~~~~~i~~l~~~~~~~a~~P-~v~d~~ 543 (641) T protein:vir:94 505 PYKFLALGANYVVERERMVTDLLQLLDISGRVP-QIGQSL 543 (641) T ss_pred eeeEeecchhHHHHHHHHHHHHHHHHHHhhcCh-hhhhcC Confidence 0000000 112222 No 232 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=27.03 E-value=1.9 Score=19.07 Aligned_cols=362 Identities=13% Similarity=0.032 Sum_probs=143.1 Q ss_pred Ccccchh-----------------ccccccccccccccchhhhhhhccCccccccc---HHHHh----hhHHHHHHHHHH Q lcl|Aclame:pro 1 MGLLTPK-----------------NFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVS---ALSAL----QNTNVYSVINRI 56 (383) Q Consensus 1 Mg~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~v~~~i~~i 56 (383) |.-.+.. ...-..-+..-....| .+. ......-+ -+..+ --+.+...++.+ T Consensus 32 m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP----~~~-~~~~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l 106 (535) T protein:vir:80 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLP----MPS-VDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCC----CCC-cccCCcCCHHHHHHHHhhccCCChhHHHHHHH Confidence 4422110 0000000000000000 000 00000000 11112 234556666666 Q ss_pred HHhhccceeEee-cchhhhhhhCCC-ccCCHHHHHHHHHHHHHhcCCceEEEEeccc------------------eEEee Q lcl|Aclame:pro 57 ASDVSSAHFKTE-NTATLNRLESPS-SLIGRFSFWQGALMQLCLSGNDYIPLVGQNL------------------EHIPN 116 (383) Q Consensus 57 a~~ia~~~~~v~-~~~~~~l~~~PN-~~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~------------------~~~~~ 116 (383) ++.+-+.|..+. ......|..... ...+-.+|.+.+....+.+|-+++++..... .++.+ T Consensus 107 ~G~vfrk~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rPy~~~y~a 186 (535) T protein:vir:80 107 MGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHP 186 (535) T ss_pred hchhhcCCcceeccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCcEEEEech Confidence 666555553332 122233443333 2458899999999999999999998764211 01100 Q ss_pred -----------------cCccee---eeecCC-----ceEEEEEEec--CceE-----------------EEEchh---- Q lcl|Aclame:pro 117 -----------------SDVQIN---YLPGNM-----GIVYTVLESN--DRPK-----------------MVLRQD---- 148 (383) Q Consensus 117 -----------------~~~~~~---~~~~~~-----~~~~~~~~~~--~~~~-----------------~~~~~~---- 148 (383) ..+... ...+++ ...|++...+ +... ..++.+ T Consensus 187 e~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~G~y~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 266 (535) T protein:vir:80 187 TSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN 266 (535) T ss_pred hhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCCceEEEEEEEeecCCccccccceeecccCCCc Confidence 000100 001110 0112221111 1111 011111 Q ss_pred --heEEecccCccccCccccCcHHHHHHHH-HHHHHHHHHHHHHHHhccCCcceEEEEcCcCCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 149 --QMLHFRLMPDPQYRYLIGRSPLESLQNA-LNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANT 225 (383) Q Consensus 149 --~vih~r~~~~~~~~~~~G~spi~~~~~~-i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (383) .+|=|-.+...+.....|.+|+..++.. +.+.+....+.. .+...+.|-.+++-.......+.. + -....- T Consensus 267 ~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~-il~~~~~P~l~i~G~~~~~~~~~~----~-~~~i~i 340 (535) T protein:vir:80 267 PFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE-MAFVAGQPTAFFTGLTKDWVEDVF----K-DFKVHL 340 (535) T ss_pred ccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHhhchhHHHH-HHHHhcCceeeeecCchhhhhcCC----C-CcceEe Confidence 1222222222222345688898766664 444444444433 344555566665532211110000 0 000112 Q ss_pred CcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccchhHHHHHHHHHH-HHHHHHH Q lcl|Aclame:pro 226 GDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYL-ANLNSYV 304 (383) Q Consensus 226 g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~e~~~~~~~-~tl~p~~ 304 (383) | ++..+.++.|.++..+..++.-+. .+.++...++++. .|- .++... ..+.+. ........-. ..|.-+. T Consensus 341 G--~~~~~~lP~~~~~~~~e~~~~~~a--~~~l~~~e~qM~~-lGa--~ll~~~-~~~~Ta-~~a~~~~~~~~S~L~~~a 411 (535) T protein:vir:80 341 G--SRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIA-MGA--NLLVKS-GGNRTF-GEAQQEEASEQSILSACT 411 (535) T ss_pred c--CcccccCCCCCCcceeeeccchhH--HHHHHHHHHHHHH-HHH--HhhccC-cccccH-HHHHHHHHHHhHHHHHHH Confidence 2 234667877766666665554433 2333333333333 222 222211 111111 1111111111 2366677 Q ss_pred HHHHHHHHhhc------CC-----ce--eeeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCccCCccccc Q lcl|Aclame:pro 305 NPIVDELRLKM------NA-----PD--LELDIKDML-DVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (383) Q Consensus 305 ~~i~~~l~~~l------~~-----~~--~~fd~~~ll-~~d~~~~~~~~~~~~~~G~~t~nE~R~~~g~~p~~~~d~~~~ 370 (383) .+++++++..| .+ .. |+.+.+-.. ..|.+ .+.++-++++.|.++....++.+.+-++...+.... T Consensus 412 ~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~-~~~all~~~~~G~Is~et~~~~L~r~gvl~~~~~~e 490 (535) T protein:vir:80 412 KNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN-ERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKA 490 (535) T ss_pred HHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHH-HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcccchH Confidence 77777776543 12 12 333333222 22444 345566788888898888887776655543321000 Q ss_pred ----------------cCC-CCCCCCCCCC Q lcl|Aclame:pro 371 ----------------KPL-TNETKGGDDK 383 (383) Q Consensus 371 ----------------~~~-~~~~~gGd~~ 383 (383) ... ....-||++. T Consensus 491 ee~~ri~~E~~~~~~~~g~~~d~~~~g~~~ 520 (535) T protein:vir:80 491 ETEGKATVEFIAKTAAAGKVGDAASGGTNK 520 (535) T ss_pred HHHHHHHhhhhhccccCCCCCCCCCCCCCc Confidence 000 0111233333 No 233 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=27.00 E-value=1.9 Score=19.07 Aligned_cols=346 Identities=12% Similarity=0.075 Sum_probs=121.2 Q ss_pred Ccccchhcccccc--ccccccccchhhhhhhccC------------cccccccHHHHhhhHHHHHHHHHHHHhhccceeE Q lcl|Aclame:pro 1 MGLLTPKNFSKRN--AKNMVYPSNPAFFTTTVGG------------MQLSYVSALSALQNTNVYSVINRIASDVSSAHFK 66 (383) Q Consensus 1 Mg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~ 66 (383) .|++. .+|.... ....+.. .......+... .....+++... +++--|.++...++. T Consensus 153 ~~i~k-v~we~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~--------~~dp~a~~~~d~~~v 222 (651) T protein:vir:80 153 NSVLA-LPWRVETAEVKKKVQV-RTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDC--------FYDPNVTDPNRGAFI 222 (651) T ss_pred ceEEE-Eeecceeeeeehheec-cccccccccceeeeccceeeeceeEEEEecHHHe--------eecCCCcCcccccee Confidence 22221 1111110 0000000 00000000000 00000111111 111111122222221 Q ss_pred eecchhhhhhhCCCccCCHHHHHHHH-------------HHHHHhcCCceEEEEe---cc--c-eEEeecCcce---e-- Q lcl|Aclame:pro 67 TENTATLNRLESPSSLIGRFSFWQGA-------------LMQLCLSGNDYIPLVG---QN--L-EHIPNSDVQI---N-- 122 (383) Q Consensus 67 v~~~~~~~l~~~PN~~~s~~~f~~~~-------------~~~l~l~G~a~~~~~~---~~--~-~~~~~~~~~~---~-- 122 (383) +.. ..+..++.+.+ +.......-.+-.-.. +. . ..-+...+.+ . T Consensus 223 ~~~------------~~t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~ 290 (651) T protein:vir:80 223 RKL------------TKTKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGD 290 (651) T ss_pred eee------------eeeHHHHHHHHhcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEEE Confidence 100 01111111110 0000000000000000 00 0 0000011111 0 Q ss_pred eeecCCceEEEEEEecCceEE---EE---chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 123 YLPGNMGIVYTVLESNDRPKM---VL---RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQIN 196 (383) Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~---~~---~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (383) ....+++...++....+.... .. .....+|+++...++ ..||.|+++.+.......+.+.+.......-.+. T Consensus 291 ~d~e~~~~~~~~v~~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~--~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~ 368 (651) T protein:vir:80 291 IHLENKTYHDVVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTAR--QPYAMGALQPNLGMLHELNIITNQRLDNLELAID 368 (651) T ss_pred eeccCCceEEEEEEEcCcEEecccccCCCCCCCeeeecceecCc--cccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhC Confidence 111111211112222221110 11 122566777665555 4689999999999999888888888877777777 Q ss_pred cceEEEEcCcCCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHh Q lcl|Aclame:pro 197 PAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDIL 276 (383) Q Consensus 197 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~l 276 (383) |.+++.. ++...+++. . . .-|++++...+.++.++...+.+.+......+.....+-..+||+...- T Consensus 369 ~~~~v~~-d~~~~~~~l-------~--~---~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~ 435 (651) T protein:vir:80 369 QMYTLRS-DGLLQPEDV-------Y--T---EPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVG 435 (651) T ss_pred CcEEecC-CccccHHHh-------h--c---CCCceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHh Confidence 7777653 334444332 1 1 1245677777777777765443433323456666778899999998876 Q ss_pred ccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------------Cc-------------ee- Q lcl|Aclame:pro 277 GGGTS--TESQHSNIDQIKATYLANLNSYVNPIVDELRLKMN--------------------AP-------------DL- 320 (383) Q Consensus 277 g~~~~--~~~~~~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~--------------------~~-------------~~- 320 (383) |.... ++.+.+...+........|.++++.+.+++-.-|+ ++ ++ T Consensus 436 g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~ 515 (651) T protein:vir:80 436 ANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQ 515 (651) T ss_pred CCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCcccee Confidence 65332 22333333333333334456666655554321110 00 11 Q ss_pred -eeechhhhccCHHH---HHHHHHHHHhCCCcCH---------HHHHHHhCCCCccCCccccccCCCC----CCCCCCCC Q lcl|Aclame:pro 321 -ELDIKDMLDVDDSI---LINQVSNLAKSGVLGA---------EQAQFILTRSGFLPDNLPEFKPLTN----ETKGGDDK 383 (383) Q Consensus 321 -~fd~~~ll~~d~~~---~~~~~~~~~~~G~~t~---------nE~R~~~g~~p~~~~d~~~~~~~~~----~~~gGd~~ 383 (383) .+++.++-.....+ +...+..+++.+.-.+ +-+++++..-+++..+......... +.+.-..| T Consensus 516 ~~~~iv~~g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~g~~~~~~~l~~~~q~~~~~~~~~~~~q 595 (651) T protein:vir:80 516 KEVRLVPIGSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHWGFEEPEAYLKQQDQQAPANPQEALLSQ 595 (651) T ss_pred eeeeeeeccHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHcCCCCcHHhcCCCccchhhhhhHHHHhh Confidence 11111110011111 2222222332221111 1123333222332222111111111 10100001 No 234 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=21.71 E-value=2.6 Score=18.35 Aligned_cols=351 Identities=12% Similarity=0.030 Sum_probs=139.2 Q ss_pred Ccc-----cchhcc-------ccc-------cccccccccchhhhhhhccCcccccccHHHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MGL-----LTPKNF-------SKR-------NAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVS 61 (383) Q Consensus 1 Mg~-----~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia 61 (383) |+= ...+.. .+. +-...+.|....+............-.....+ .++.-.|++.+|..+. T Consensus 1 m~~d~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~-dstg~~a~~~LAs~l~ 79 (549) T protein:vir:10 1 MTNDDAKILQALNADHGRMKEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQKMF-DSTAPLALRNFVAAMD 79 (549) T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccccccccCCCCCCcccccccccc-cchHHHHHHHHHHHHH Confidence 321 000000 000 00111222111111101000000000001112 2444556666665553 Q ss_pred c------ceeE-ee--cch------hhh--------hhhCCCc-cCCHHHHHHHHHHHHHhcCCceEEEEeccce----- Q lcl|Aclame:pro 62 S------AHFK-TE--NTA------TLN--------RLESPSS-LIGRFSFWQGALMQLCLSGNDYIPLVGQNLE----- 112 (383) Q Consensus 62 ~------~~~~-v~--~~~------~~~--------l~~~PN~-~~s~~~f~~~~~~~l~l~G~a~~~~~~~~~~----- 112 (383) + -||. +. +.. ... +...-|. .-+.+.-+..++.++.++||+.+++..+... T Consensus 80 ~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~~~f~ 159 (549) T protein:vir:10 80 SMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKGIVYR 159 (549) T ss_pred hhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCeeEEE Confidence 3 2442 11 100 000 1110111 1223444556778888999999987654322 Q ss_pred EEeecCcceeeeecCCce-EEE---------------------------------------------------------- Q lcl|Aclame:pro 113 HIPNSDVQINYLPGNMGI-VYT---------------------------------------------------------- 133 (383) Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~~~---------------------------------------------------------- 133 (383) .+|+..+.+..+..+... +|. T Consensus 160 ~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~~~~pf 239 (549) T protein:vir:10 160 NVPMQRLWFAENNSGLIDKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHAVEPRADRDPRKLDGRNMQF 239 (549) T ss_pred EEEcCeEEEeeCCCCCeEEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEEeecCCCCCccccccccCce Confidence 233332222221110000 000 Q ss_pred --EEEecCceEEEE-----chhheEEecccCccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEEcCc Q lcl|Aclame:pro 134 --VLESNDRPKMVL-----RQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNY 206 (383) Q Consensus 134 --~~~~~~~~~~~~-----~~~~vih~r~~~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~~~ng~~p~~~~~~~~~ 206 (383) +....+. ...+ ..-..+-.|+...++ ..||.||.+-+...+...+.+.+.......-...|...+...+ T Consensus 240 ~sv~~e~~~-~~il~esg~~e~P~~~~Rw~~~~g--e~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g- 315 (549) T protein:vir:10 240 ASYWLDEGR-DRIVQNSGFRTFPFAIGRFYVGTD--DVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVDPPLLANEDG- 315 (549) T ss_pred EEEEEEecC-CEeeccCCcccCCcceeeeeecCC--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccc- Confidence 0000000 0000 111122233322232 2589999999999999999999999999998888887754333 Q ss_pred CCCHHHHHHHHHHHHHHhcCcccCCceeccCCceeEecccChhHHHHHHHHHHHHHHHHHHHhcCCHHHhccccccccch Q lcl|Aclame:pro 207 LSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQH 286 (383) Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~~~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~ 286 (383) ..++.. ...|........-.+...++|+... .+++...+..+..+.+|-.+|-+..... ..+....+. T Consensus 316 ~~~~~~----------l~pgg~~~~~~~~~~~~~~~pl~~~-~~~~~~~~~i~~~~~rI~~af~~d~~~~-~~~~~~~TA 383 (549) T protein:vir:10 316 VLDGFD----------LRSGALNWGGLNDKGEEMVKPLLTG-KQAQIGIEFAQDTRQTINQWFYVTLFQI-LVDSGDMTA 383 (549) T ss_pred ccccce----------eccCCccccccCCCCccceeeeccc-cchhHHHHHHHHHHHHHHHHHhhhhhhh-hcCCCCccH Confidence 222211 1122211111112234557777654 4566655677888899999997754222 123444555 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------Cc--------eeeeechhhhccCHHHHHHHHHHHHhC Q lcl|Aclame:pro 287 SNIDQIKATYLANLNSYVNPIVDELRLKMN-------------AP--------DLELDIKDMLDVDDSILINQVSNLAKS 345 (383) Q Consensus 287 ~~~e~~~~~~~~tl~p~~~~i~~~l~~~l~-------------~~--------~~~fd~~~ll~~d~~~~~~~~~~~~~~ 345 (383) ....+........|.|.+..+.++|-.-|+ ++ .+.+++. ..+.-+++.....+-+ T Consensus 384 tEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~p~~l~~~~~~~~i~---yis~La~aq~~~~~~~- 459 (549) T protein:vir:10 384 TEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDMPQELIDAGADVDVE---YDSPLNKAMRAGEGAA- 459 (549) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhcCCceeEEE---eecHHHHHHHHHHHHH- Confidence 444444445556677777777666432221 10 1111111 1122222222221111 Q ss_pred CCcCHHHHHHHhCCCCccCCccccccCCCCCCCCCCCC Q lcl|Aclame:pro 346 GVLGAEQAQFILTRSGFLPDNLPEFKPLTNETKGGDDK 383 (383) Q Consensus 346 G~~t~nE~R~~~g~~p~~~~d~~~~~~~~~~~~gGd~~ 383 (383) +...++.-+-...=.|.... .+ -+|+= T Consensus 460 -------i~~~~~~~~~laq~~Pe~ld---~i-d~d~~ 486 (549) T protein:vir:10 460 -------ILQWLQQLGIVSQFDPAAAK---VP-NGARI 486 (549) T ss_pred -------HHHHHHHHHHHhccChhHHh---cC-CHHHH Confidence 12222100000000000000 00 11111 Done!