BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:94996|NCBI_annot:hypothetical protein|genbank:acc:YP_224027;genbank:gi:62327314;genbank:GeneID:51768 24 (116 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: majo... 49 2e-08 gi|839|lcl|protein:vir:93600 Length: 281 # NCBI annotation: puta... 49 3e-08 gi|2833|lcl|protein:vir:105771 Length: 245 # NCBI annotation: gp... 37 9e-05 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 25 0.36 gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: pu... 22 1.7 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 22 2.1 >gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: major tail subunit # Family: family:all:628 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037706;genbank:gi:9634159;genbank:GeneID: 1262542 Length = 234 Score = 48.5 bits (114), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 32 LRFSTGLNDATAVTAGQAITLTVVLADGMDPKTVQWYKDNNAISGATDLTYTKANSVAAD 91 L+ +T L + +V G AI++ VV A G P W K + +SG T T+ KA +V+ D Sbjct: 147 LKLTTDLPSSLSVAVGAAISMAVVAAGGKPPYAYTWKKAGSTVSGQTSDTFNKATAVSGD 206 Query: 92 SGTYKVVAQD 101 +G Y V D Sbjct: 207 AGDYTCVVTD 216 >gi|839|lcl|protein:vir:93600 Length: 281 # NCBI annotation: putative major tail subunit # Family: family:all:628 # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449301;genbank:gi:157166049;goa:Q6H9U0 ;interpro:IPR007110;interpro:IPR013098;uniprot:Q6H9U0;ge nbank:GeneID:5580422 Length = 281 Score = 48.5 bits (114), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 29 VMPLRFSTGLNDATAVTAGQAITLTVVLADGMDPKTVQWYKDNNAISGATDLTYTKANSV 88 V+PL F L V G +T++V + G P W KD + G T T++KAN+ Sbjct: 187 VVPLAFVKNLEKTLTVNTGALLTMSVSVNGGTPPYKHAWKKDGQPVEGQTTDTFSKANTQ 246 Query: 89 AADSGTYKVVAQDGY---GNIISDSTVVTV 115 + D G Y D +I SD+ VTV Sbjct: 247 SGDKGAYTCEVTDSAEQPQSITSDACTVTV 276 >gi|2833|lcl|protein:vir:105771 Length: 245 # NCBI annotation: gp16 # Family: family:all:628 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224154;genbank:gi:62362229;genbank:GeneID :3342524 Length = 245 Score = 36.6 bits (83), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Query: 44 VTAGQAITLTVV--LADGMDPKTVQWYKDN-NAISGATDLTYTKANSVAADSGTY 95 +TAG +TLTV ++D T QW KD N SG T TYTK+++ DSG+Y Sbjct: 168 LTAGDTLTLTVAATVSDSSS-LTYQWKKDGINVSSGGTTATYTKSSATTGDSGSY 221 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 24.6 bits (52), Expect = 0.36, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%) Query: 17 PQDGQVEIDMENVMPL----RFSTGLNDATAVTAGQAITLT-----VVLADGM 60 PQ+G+ E N M + R G+ DAT TAG T +++AD + Sbjct: 138 PQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDL 190 >gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: putative major tail protein # Family: family:all:1028 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025036;genbank:gi:48697269;genbank:GeneID :2948286 Length = 210 Score = 22.3 bits (46), Expect = 1.7, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Query: 70 DNNAISGATD-LTYTKANSVAADSGTYKVVA 99 DNNA D LTYT +++A +S YK+ + Sbjct: 145 DNNAEQRTDDTLTYTALSTIAFNSQPYKIYS 175 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 22.3 bits (46), Expect = 2.1, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 60 MDPKTVQWYKDNNAISGATDLTYTKANSVAADSGTYKVVAQDGYG---NIISDSTVVTV 115 M + W K + + + ++ +S A G+Y V+ D + N I+D +V Sbjct: 132 MQQGIISWNKGSLELENGSKISANSTSSSAVRGGSYNVIFLDEFAFIPNHIADDFFASV 190 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.312 0.128 0.351 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,273 Number of Sequences: 514 Number of extensions: 2108 Number of successful extensions: 13 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of query: 116 length of database: 206,069 effective HSP length: 61 effective length of query: 55 effective length of database: 174,715 effective search space: 9609325 effective search space used: 9609325 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 32 (16.9 bits)