BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:8108|NCBI_annot:gp12|genbank:acc:NP_8176 89;genbank:gi:29566120;genbank:GeneID:1259314 (265 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp1... 545 e-157 gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp4... 186 3e-49 gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp... 175 4e-46 gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp... 175 4e-46 gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp1... 174 8e-46 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 50 3e-08 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 50 3e-08 gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp3... 42 1e-05 gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: ter... 27 0.34 >gi|14600|lcl|protein:vir:8108 Length: 265 # NCBI annotation: gp12 # Family: family:all:1912 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817689;genbank:gi:29566120;genbank:GeneID :1259314 Length = 265 Score = 545 bits (1404), Expect = e-157, Method: Compositional matrix adjust. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANGTVRWSPLA 60 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANGTVRWSPLA Sbjct: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANGTVRWSPLA 60 Query: 61 QDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWP 120 QDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWP Sbjct: 61 QDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWP 120 Query: 121 FESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQPVDAEKI 180 FESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQPVDAEKI Sbjct: 121 FESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQPVDAEKI 180 Query: 181 GRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRGTAAELTFKPEPSGYFMAMVD 240 GRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRGTAAELTFKPEPSGYFMAMVD Sbjct: 181 GRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRGTAAELTFKPEPSGYFMAMVD 240 Query: 241 GEYKPIIKHTFIGGPAWDALAGDGS 265 GEYKPIIKHTFIGGPAWDALAGDGS Sbjct: 241 GEYKPIIKHTFIGGPAWDALAGDGS 265 >gi|14224|lcl|protein:vir:8332 Length: 271 # NCBI annotation: gp49 # Family: family:all:1912 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817900;genbank:gi:29566333;genbank:GeneID :1259528 Length = 271 Score = 186 bits (471), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 112/272 (41%), Positives = 148/272 (54%), Gaps = 11/272 (4%) Query: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANG--TVRWSP 58 M P TGT+ AGG+ VD+R +R GL A+ RD G TNISP + T WSP Sbjct: 1 MAIPSTGTSWRAGGFGDVDSRFN--NRGGLAAILIRDNRGPDTNISPWASGNPPTRNWSP 58 Query: 59 LAQDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSN 118 A+DG RDDLFAH L G WV N PNEG++L GA E GP P I D+QMI QSN Sbjct: 59 FAEDGNPRDDLFAHILVDGDWVTNPEPNEGFHLIGALTEDGGPERAPDISNDNQMILQSN 118 Query: 119 WPFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPG-EADGFSQPVDA 177 PF+SD+T + F ++ + P ++RL NL LSD++GN +VE PG E G +PVD Sbjct: 119 MPFDSDLTSESLSINFTGVETVKPLMKRLRMNLALSDSDGNSIVEDPGTENFGIGKPVDN 178 Query: 178 EKIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRG-TAAELTFKPEPSGYFM 236 E Q +L R+K G++LY + Y L LN+ G + K A L + P YF+ Sbjct: 179 EGPEYQIILMFARRKRGKFLYTAEGYSLCKLNDIGAFRRSKTDPDAGSLGYMVLPDPYFV 238 Query: 237 AM-----VDGEYKPIIKHTFIGGPAWDALAGD 263 E P+ H ++ G +W + GD Sbjct: 239 GKDPNNPDSDELIPLYYHEWVSGESWTDIKGD 270 >gi|8449|lcl|protein:vir:105827 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655772;genbank:gi:109522095;genbank:GeneI D:4157635 Length = 269 Score = 175 bits (444), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 108/276 (39%), Positives = 151/276 (54%), Gaps = 18/276 (6%) Query: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANG-TVRWSPL 59 MTQPLTGT +AGG+T + R GL AV RD G +T++SP + TV+WSP Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFI--ERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPF 58 Query: 60 AQDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNW 119 AQDG+LRDDLF + +G + NT+PNEGW+ G E G P + +DD M+ QS + Sbjct: 59 AQDGKLRDDLFIRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKF 118 Query: 120 PFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQP-VDAE 178 P +S++T++ F AL P I RL + LPL D GNPLV LPG D P +DA+ Sbjct: 119 PVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDAD 178 Query: 179 KIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRG-TAAELTFKPEPSGYFM- 236 Q LL R+ G ++Y + Y L+++ ++ K A+LT+K P+ YFM Sbjct: 179 SAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMR 238 Query: 237 -------AMVDGEYKPIIKHTFIGGPAWDALAGDGS 265 A+V G + + ++GGP W DGS Sbjct: 239 PDPAGTIALVPGYF-----YVWMGGPGWAEQYSDGS 269 >gi|9704|lcl|protein:vir:102610 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_655007;genbank:gi:109392197;genbank:GeneI D:4157232 Length = 269 Score = 175 bits (444), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 108/276 (39%), Positives = 151/276 (54%), Gaps = 18/276 (6%) Query: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANG-TVRWSPL 59 MTQPLTGT +AGG+T + R GL AV RD G +T++SP + TV+WSP Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFI--ERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPF 58 Query: 60 AQDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNW 119 AQDG+LRDDLF + +G + NT+PNEGW+ G E G P + +DD M+ QS + Sbjct: 59 AQDGKLRDDLFIRRKVNGKYEYNTDPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKF 118 Query: 120 PFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQP-VDAE 178 P +S++T++ F AL P I RL + LPL D GNPLV LPG D P +DA+ Sbjct: 119 PVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDAD 178 Query: 179 KIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRG-TAAELTFKPEPSGYFM- 236 Q LL R+ G ++Y + Y L+++ ++ K A+LT+K P+ YFM Sbjct: 179 SAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMR 238 Query: 237 -------AMVDGEYKPIIKHTFIGGPAWDALAGDGS 265 A+V G + + ++GGP W DGS Sbjct: 239 PDPAGTIALVPGYF-----YVWMGGPGWAEQYSDGS 269 >gi|18282|lcl|protein:vir:7995 Length: 269 # NCBI annotation: gp11 # Family: family:all:1912 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817349;genbank:gi:29565777;genbank:GeneID :1259036 Length = 269 Score = 174 bits (442), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 108/276 (39%), Positives = 150/276 (54%), Gaps = 18/276 (6%) Query: 1 MTQPLTGTTPAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPHNANG-TVRWSPL 59 MTQPLTGT +AGG+T + R GL AV RD G +T++SP + TV+WSP Sbjct: 1 MTQPLTGTDWSAGGFTDIHKPFI--ERGGLQAVFIRDNRGAATDMSPFEDDCVTVKWSPF 58 Query: 60 AQDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNW 119 AQDG+LRDDLF + +G + NT PNEGW+ G E G P + +DD M+ QS + Sbjct: 59 AQDGKLRDDLFIRRKVNGKYEYNTAPNEGWWHIGCNPEDGGAEREPDVTSDDLMVLQSKF 118 Query: 120 PFESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQP-VDAE 178 P +S++T++ F AL P I RL + LPL D GNPLV LPG D P +DA+ Sbjct: 119 PVDSEVTEKSYSVRFVALGTADPLIHRLESELPLCDNAGNPLVALPGTPDYGEGPLLDAD 178 Query: 179 KIGRQFLLYGIRKKEGRYLYEVDAYDLAYLNNKGERKLGKRG-TAAELTFKPEPSGYFM- 236 Q LL R+ G ++Y + Y L+++ ++ K A+LT+K P+ YFM Sbjct: 179 SAEYQLLLLYARRTSGGFIYRAEGYPAVKLDDQASKQRSKTDPDTADLTYKVLPNEYFMR 238 Query: 237 -------AMVDGEYKPIIKHTFIGGPAWDALAGDGS 265 A+V G + + ++GGP W DGS Sbjct: 239 PDPAGTIALVPGYF-----YVWMGGPGWAEQYSDGS 269 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 49.7 bits (117), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 35/201 (17%) Query: 62 DGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWPF 121 DG L+D L + G +Y GA E +G P TDD I QS Sbjct: 47 DGNLKDTLLSEDFPGG----------RFYEIGAITE-DGVEFNPKFSTDDTKIWQSRRAQ 95 Query: 122 ESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQPVDAEKIG 181 +D+T+ DE F A +N P I L NLPL + P V G ++P + + Sbjct: 96 RTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLENV---PSVGTAGYK--ATKPNYTDMVY 149 Query: 182 RQFLLYGI--RKKEGRYLYEVDAYDLAYLNNKGERKL-GKRGTAAELTF--KPEPSGYFM 236 RQ ++ G+ R E Y+ EV L G++ K ELTF P+P+ F Sbjct: 150 RQIVVIGVDGRMDEAEYVAEVRPR--VSLTKVGKQSFKAKEIDGTELTFGVYPDPASGFP 207 Query: 237 AMVDGEYKPIIKHTFIGGPAW 257 A GGP W Sbjct: 208 A-----------RRIPGGPFW 217 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 49.7 bits (117), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 35/201 (17%) Query: 62 DGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMIEQSNWPF 121 DG L+D L + G +Y GA E +G P TDD I QS Sbjct: 47 DGNLKDTLLSEDFPGG----------RFYEIGAITE-DGVEFNPKFSTDDTKIWQSRRAQ 95 Query: 122 ESDITKQDEPFTFQALQNLYPAIQRLANNLPLSDANGNPLVELPGEADGFSQPVDAEKIG 181 +D+T+ DE F A +N P I L NLPL + P V G ++P + + Sbjct: 96 RTDVTEDDEEVMFTAAENT-PLIDYLRYNLPLENV---PSVGTAGYK--ATKPNYTDMVY 149 Query: 182 RQFLLYGI--RKKEGRYLYEVDAYDLAYLNNKGERKL-GKRGTAAELTF--KPEPSGYFM 236 RQ ++ G+ R E Y+ EV L G++ K ELTF P+P+ F Sbjct: 150 RQIVVIGVDGRMDEAEYVAEVRPR--VSLTKVGKQSFKAKEIDGTELTFGVYPDPASGFP 207 Query: 237 AMVDGEYKPIIKHTFIGGPAW 257 A GGP W Sbjct: 208 A-----------RRIPGGPFW 217 >gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp31 # Family: family:all:1912 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID :1260104 Length = 334 Score = 41.6 bits (96), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 35/159 (22%) Query: 10 PAAGGYTTVDNRLQGGHRTGLIAVAFRDALGTSTNISPH-NANGTVR------------- 55 PA GG T N LQ G+ + R A+ T I + N +GTV Sbjct: 4 PANGG--TYANLLQ----PGINPLTVRKAIITDILIRDYRNLDGTVHNLADPAVGLGNDG 57 Query: 56 -WSPLAQDGQLRDDLFAHKLESGVWVENTNPNEGWYLAGAFGEGNGPSSRPSIDTDDQMI 114 +SP A+DG+LR DL ++G+ G+Y GA E +G D D MI Sbjct: 58 FFSPFAEDGKLRSDLLG---DNGL---------GFYHLGALHE-DGTEMTYDTDVADTMI 104 Query: 115 EQSNWPFESDITKQDEPFTFQALQNLYPAIQRLANNLPL 153 QS D+T+ ++ T +AL+ P + L + PL Sbjct: 105 AQSKRAVRFDVTQDNDGITIKALEGT-PLVDALRYDKPL 142 >gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: terminase large subunit # Family: family:all:662 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579204;genbank:gi:93007440;genbank:GeneID :5076784 Length = 448 Score = 26.6 bits (57), Expect = 0.34, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 18 VDNRLQGGHRTGLIAVAFRDALGTSTN 44 D+R+ GGHR +IA DA+ ++ N Sbjct: 81 CDDRIPGGHRMSIIAPTQGDAVESAVN 107 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.314 0.135 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 138,161 Number of Sequences: 514 Number of extensions: 6725 Number of successful extensions: 41 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 9 length of query: 265 length of database: 206,069 effective HSP length: 70 effective length of query: 195 effective length of database: 170,089 effective search space: 33167355 effective search space used: 33167355 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 36 (18.5 bits)