BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:9699|NCBI_annot:hypothetical protein|genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID:12577 75 (584 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 1208 0.0 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 584 e-169 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 358 e-101 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 357 e-100 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 357 e-100 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 357 e-100 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 356 e-100 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 356 e-100 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 273 3e-75 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 252 9e-69 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 246 6e-67 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 242 1e-65 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 241 1e-65 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 239 6e-65 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 226 7e-61 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 225 1e-60 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 220 3e-59 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 220 3e-59 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 219 6e-59 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 219 7e-59 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 219 7e-59 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 214 3e-57 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 212 1e-56 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 208 1e-55 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 207 2e-55 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 180 5e-47 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 169 1e-43 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 159 8e-41 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 159 9e-41 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 159 1e-40 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 158 1e-40 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 158 1e-40 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 158 2e-40 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 157 3e-40 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 155 1e-39 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 142 8e-36 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 142 9e-36 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 140 5e-35 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 137 3e-34 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 125 1e-30 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 125 2e-30 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 124 4e-30 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 123 5e-30 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 122 1e-29 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 109 8e-26 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 108 2e-25 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 99 1e-22 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 85 2e-18 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 85 2e-18 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 79 1e-16 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 79 2e-16 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 71 4e-14 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 71 4e-14 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 71 4e-14 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 70 7e-14 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 60 6e-11 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 58 4e-10 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 57 7e-10 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 55 2e-09 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 55 2e-09 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 55 3e-09 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 55 3e-09 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 54 6e-09 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 50 9e-08 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 50 9e-08 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 46 1e-06 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 40 6e-05 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 40 1e-04 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 38 3e-04 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 37 5e-04 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 37 5e-04 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 34 0.004 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 33 0.008 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 33 0.010 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 32 0.019 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 32 0.020 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 29 0.12 gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp... 29 0.14 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 28 0.29 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 28 0.29 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 27 0.44 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 27 0.77 gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 26 1.1 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 26 1.2 gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 26 1.4 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 26 1.6 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 25 1.8 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 25 3.3 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 25 3.3 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 24 4.0 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 24 4.2 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 24 6.2 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 24 6.3 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 23 6.4 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 23 6.8 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 1208 bits (3126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/584 (100%), Positives = 584/584 (100%) Query: 1 MTIEYDYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYL 60 MTIEYDYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYL Sbjct: 1 MTIEYDYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYL 60 Query: 61 PEKAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARK 120 PEKAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARK Sbjct: 61 PEKAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARK 120 Query: 121 NGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRK 180 NGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRK Sbjct: 121 NGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRK 180 Query: 181 ATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQL 240 ATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQL Sbjct: 181 ATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQL 240 Query: 241 DNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWI 300 DNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWI Sbjct: 241 DNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWI 300 Query: 301 KSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELA 360 KSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELA Sbjct: 301 KSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELA 360 Query: 361 QIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGV 420 QIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGV Sbjct: 361 QIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGV 420 Query: 421 SYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK 480 SYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK Sbjct: 421 SYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK 480 Query: 481 RHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRID 540 RHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRID Sbjct: 481 RHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRID 540 Query: 541 KNKNSNKIDPLDAALDGYAVCYLEPFDGSGYWTNEKIIGGESLF 584 KNKNSNKIDPLDAALDGYAVCYLEPFDGSGYWTNEKIIGGESLF Sbjct: 541 KNKNSNKIDPLDAALDGYAVCYLEPFDGSGYWTNEKIIGGESLF 584 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 584 bits (1506), Expect = e-169, Method: Compositional matrix adjust. Identities = 282/548 (51%), Positives = 389/548 (70%), Gaps = 4/548 (0%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 + K V+D ++ +SK V A RH DLKR D +++ Y P A + F+EILP+ K+G Sbjct: 4 FIKRVLDGRLITSKAVNLAVKRHQEDLKRTD---WRWHYDPNLAGKAVKFMEILPEPKSG 60 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 KP PLA FQKFIIG++YGW K D ++RRF IS+ARKNGK++LI+G++LYEFLFG N Sbjct: 61 KPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKN 120 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P+ RQL+ ANDR QA I + M K +L +L KD +++ KI RDEL NL D S IR+ Sbjct: 121 PANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRS 180 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 SRDTG VDG+EP+V V+DE+A +KT +M+E L SGQ L + IISTAG D+NVPM Sbjct: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 YPY K+L GE E YF ++AEQDN +E+ D ++WIKSNP+L+V+ LH ++ DYL Sbjct: 241 QQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQISDYLT 300 Query: 321 TRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQI-DKPDTYKRRVWLGVDVG 379 T+ + G +N L+KNFN+WRQ++E+SY+D +W+ A++ DKPD +R W+G+DVG Sbjct: 301 TKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWIGIDVG 360 Query: 380 RVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESG 439 R SDLFAIS +I + +W+LD ++FVA+K G+ K K D + Y E+ G EI++LESG Sbjct: 361 RTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESG 420 Query: 440 VIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNM 499 +ID++RV E +E+ + N+ +V GI +DPYQFG +LT IEK HPEWP+++V Q T+ L+M Sbjct: 421 IIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSM 480 Query: 500 PTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGYA 559 PTKQFRDD+ G+IKHS N ++ A NA + +DNNG+RI+KNK +NKID +DA LD YA Sbjct: 481 PTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYA 540 Query: 560 VCYLEPFD 567 + + E D Sbjct: 541 IAFKEDLD 548 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 358 bits (920), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIEV Q+ L+ Sbjct: 421 GMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 558 YAVCYLEPFDGSGYWT 573 + + F + WT Sbjct: 541 FTEARMHEFQEN--WT 554 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIEV Q+ L+ Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 558 YAVCYLEPFDGSGYWT 573 + + F + WT Sbjct: 541 FTEARMHEFQEN--WT 554 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIEV Q+ L+ Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 558 YAVCYLEPFDGSGYWT 573 + + F + WT Sbjct: 541 FTEARMHEFQEN--WT 554 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIEV Q+ L+ Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALS 480 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 558 YAVCYLEPFDGSGYWT 573 + + F + WT Sbjct: 541 FTEARMHEFQEN--WT 554 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 356 bits (913), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIE+ Q+ L+ Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALS 480 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 558 YAVCYLEPFDGSGYWT 573 + + F + WT Sbjct: 541 FTEARMHEFQEN--WT 554 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 356 bits (913), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/556 (35%), Positives = 326/556 (58%), Gaps = 12/556 (2%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YAK VV +I +S K + C RHL+ ++ + +L KA I F+E+LPD KT Sbjct: 8 YAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKA---IKFVEMLPDPKTN 64 Query: 81 KPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHN 140 +P PL FQKFI+G+LYGWR+ R F KA IS+ARK GK+++++G+ + E LFG Sbjct: 65 QPMPLMEFQKFIVGSLYGWRRG---QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQY 121 Query: 141 PSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 P +RQ++ ++ QA+ + MA +Q++ +R+K +R+ T + + +++++ S Sbjct: 122 PKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFAP 181 Query: 201 LSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 LS + AVDG +P V +LDE A+ +EM ++G NP L++STAG +LN M+ Sbjct: 182 LSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQMY 241 Query: 261 TIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLR 320 EY YI +IL+ E+ + YF Y AE D++EE++DE+ WIK+ P+LE + ++ ++ Sbjct: 242 Q-EYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQNVK 300 Query: 321 TRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 + LE G +K+LIKNFN+W+ E+S +D WE P+ + V++GVD+ Sbjct: 301 ADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGVDLS 360 Query: 380 RVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLES 438 R+ DL ++ + DD +L S SF+ + L K KRD ++Y +G E T +S Sbjct: 361 RLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAIERGEAETTQSDS 420 Query: 439 GVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLN 498 G+ID ++V++ I + + T++ V +C+DP+ + +T IE +WPLIE+ Q+ L+ Sbjct: 421 GMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALS 480 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 K+FR + +I+H+ N LLT +VNNA I+ + ++I+K N KIDP+ + + Sbjct: 481 QSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNRQKIDPIISIITA 540 Query: 558 YAVCYLEPFDGSGYWT 573 + + F + WT Sbjct: 541 FTEARMHEFQEN--WT 554 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 273 bits (699), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 179/559 (32%), Positives = 301/559 (53%), Gaps = 49/559 (8%) Query: 20 YYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK- 78 +YA+ VVD + + +K AC R LND++RI ++DF + + E+ + + K Sbjct: 11 HYAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARMFKHNKG 70 Query: 79 --TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFL 136 G+P L FQ FI+GN++GW++K ++ LRRFRKA I +ARKN K+ L+A I YE Sbjct: 71 ILAGQPIELTDFQLFIVGNIFGWKRK-ENGLRRFRKAYIQLARKNAKSQLLALIASYECF 129 Query: 137 FGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDES 196 +P S +++ R Q+ I ++ Q+ + D LK + +S Sbjct: 130 L--SPEQS-EVYIAGWGREQSSIVYNEVLAQVQAC---------------DLLKGKYTDS 171 Query: 197 YIRALSRDTGAV------------DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPF 244 Y R + +G++ DG P + V+DE+ +T+E+ ++L SG NP Sbjct: 172 YGRIRHKKSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPL 231 Query: 245 ILIISTAGMDLNVPMHTIEYPYITKILD--GEITDEGYFGYVAEQDNEEEIKDESNWIKS 302 I+II+TAG +L P +T EY Y++K++D I +E YF + E D +++IKDE NW+K+ Sbjct: 232 IVIITTAGFNLASPCYT-EYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKA 290 Query: 303 NPILEVEALHDKLMDYLRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQ 361 NPI+ A +++ M++LR+ + +L+ E + L KN N+W + Y+ W Sbjct: 291 NPIV---ATYEEGMNFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACA 347 Query: 362 I-DKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDD-YWYLDSFSFVATKYGLTAKEKRDG 419 I ++ D R ++G+D+ DL ++S ++ MDD +Y+ S SF+ L K + D Sbjct: 348 IKEQIDLDVRDCYVGIDLSMRIDLTSVSGIVPMDDGRFYVWSHSFIPED-TLAEKRRTDK 406 Query: 420 VSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIE 479 V Y +QG+ IT V+D + + I+ + W + IC+DPY +E Sbjct: 407 VPYDLWVKQGW--ITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEME 464 Query: 480 KRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNN-GMR 538 + ++E+ Q L+ PTK+FR+ + GKI H NP+L A+ NA +K D+N + Sbjct: 465 AEG--YVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENIM 522 Query: 539 IDKNKNSNKIDPLDAALDG 557 +DK+K++ +IDP+ A ++ Sbjct: 523 LDKDKSTGRIDPIAALINA 541 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 252 bits (643), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 174/570 (30%), Positives = 294/570 (51%), Gaps = 27/570 (4%) Query: 6 DYSAIGDIYKDD-AFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDED-FKFVYLPEK 63 +Y + + Y DD A YA V+D I S +K+ +AC RH++DL+RID +D F ++Y E+ Sbjct: 3 NYKDLTERYPDDPALSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQ 62 Query: 64 AADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGK 123 A + F +L DV +G+P+ + +QKFI+ ++ GWR +R F+ IS+AR NGK Sbjct: 63 AKKIVEFSTLLKDVTSGEPFEASPYQKFILASVQGWRNPETKGMR-FKTIFISMARTNGK 121 Query: 124 TILIAGILLYEFLFGHNPSMSRQLFCTANDRTQA-------KIAWDMAKKQLSSLRAKDV 176 T ++A LY FLFG +P ++RQL ++ D + W K + AK + Sbjct: 122 TQVLATYALYNFLFG-SPKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKDGVFKKLAKAL 180 Query: 177 DVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFA--ASKTNEMLELLE 234 D+ ++++ E+K + ++ LS D G++DE+ K + + + Sbjct: 181 DINDNSQVM--EIK--KQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQKQRDFISSMT 236 Query: 235 SGQGQLDNPF--ILIISTAGMDLNVPMHTIEYPYITKILDGE--ITDEGYFGYVAEQDNE 290 SG ++NP + ISTAG+D VPM +Y +K+L+ + E + EQD+E Sbjct: 237 SGM--VNNPLAQMFFISTAGVDPTVPMFE-DYKRYSKMLESGDWSSSEKDLVLIWEQDSE 293 Query: 291 EEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEES 350 +E W KSNP++E+E++ L + + T R G I +KN N+W+ + + + Sbjct: 294 DEAYLIETWPKSNPLMEIESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNA 353 Query: 351 YIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDD---YWYLDSFSFVAT 407 Y+ + A +D+ D + R V++G D + +D +++ V + Y S+ +A Sbjct: 354 YLPLDLVQDAIVDEFDYFGRDVFIGFDYSQTNDDTSLAFVFPHSGSKFHLYQHSWIPIAK 413 Query: 408 KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFD 467 + AKE+RD + Y ++ +G+ IT G+ID++ V + + NE V I +D Sbjct: 414 AGSIEAKEQRDNIDYRAVQEKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYD 473 Query: 468 PYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNN 527 + G + +++ E+ LI V Q LN PTK + K I + L + N Sbjct: 474 QWGTGNFIRRLDEVKEEYLLIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVN 533 Query: 528 AYIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 A +DNNG+++DKN NS KID DA ++ Sbjct: 534 AVTVSDNNGIKLDKNVNSQKIDAADAIVNA 563 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 246 bits (627), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 173/568 (30%), Positives = 288/568 (50%), Gaps = 17/568 (2%) Query: 4 EYDYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEK 63 E+D++ I Y+DD Y V++ +I + + AC RHL DL+R ++DF + Y ++ Sbjct: 17 EFDFTDIAKKYQDDGTKYCFDVLEGRITAGYMIKLACFRHLRDLQRQGNDDFPYSYDTDE 76 Query: 64 AADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGK 123 AA + F I P+V TG+P L +QKFI+ L+GWR + +RF +A++SV R GK Sbjct: 77 AARLLRFARICPNVDTGEPTKLMAWQKFILCMLFGWRNA--NGGKRFSRAIVSVGRGQGK 134 Query: 124 TILIAGILLYEFLFGHNPSMSRQ--LFCTANDRTQAKIAW---DMAKKQLSSLRAKDVDV 178 T L+A + Y + F + +S Q L + N + K+ M K+ + + K + Sbjct: 135 TYLMAILTAYSY-FIESLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLAN 193 Query: 179 RKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQG 238 + D++ + + +RA+S ++G D F + DE +T + + + SGQ Sbjct: 194 ETELGLHSDQVIMKANNNVLRAISAESGQYDSFHFTTAIFDEIGEIETRDAVSKIVSGQV 253 Query: 239 QLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITD-EGYFGYVAEQDNEEEIKDES 297 ++ N + ISTA + +VP + + D + D + Y V QDN EE+ Sbjct: 254 KVPNRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPE 313 Query: 298 NWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSW 357 W KSNP+L++E + LM L +R L +G I +KN N W + S++D + Sbjct: 314 TWAKSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDI 373 Query: 358 ELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMM-----DDYWYLDSFSFVATKYG-- 410 E A I + D +RV++G+D SD AI V W+++ SF+ + Sbjct: 374 ENAVIPEFDRRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGS 433 Query: 411 LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQ 470 L AK ++DGV+Y +LE +G+C IT+ G+I+ E V + V N +V +D Sbjct: 434 LEAKMEQDGVNYRDLEAKGFCTITSHPQGLINPEEVYRWFVDYVEDNALDVVFFGYDAMM 493 Query: 471 FGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYI 530 ++ +E + PL+ + Q T L PTK + +G I + ++ A+ NA I Sbjct: 494 INKIIKALES-NTSLPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVI 552 Query: 531 KTDNNGMRIDKNKNSNKIDPLDAALDGY 558 K DN G+++DK K++ KID +DA +D + Sbjct: 553 KEDNIGIQVDKMKSTYKIDVVDALIDAF 580 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 242 bits (617), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 167/566 (29%), Positives = 307/566 (54%), Gaps = 41/566 (7%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK-- 78 YA V++ + + + V AC RH++DL+R +K+ + EKA + I+F E L Sbjct: 8 YAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLRFTDGE 67 Query: 79 -TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 G+ L FQ FI+G+++GW K RRF+K+ + +ARKN K++L +GI + F Sbjct: 68 IAGQQVKLFGFQDFIVGSIFGWVCKGT-GYRRFKKSYVQLARKNAKSLLNSGIGIKLAAF 126 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDE--LKNLHDE 195 P+ Q++CTA QA+I W A+K + + D+R+ KI + +++L + Sbjct: 127 DKYPNA--QVYCTATKMKQARIVWKQARKFIEI----EPDLREIFKIKDHDAIIESLING 180 Query: 196 SYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDL 255 I AL RDTG +DGF+P+ G++DE+ + KTN+M++LLE G I II+TAG +L Sbjct: 181 GEIMALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISIITTAGFNL 240 Query: 256 NVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKL 315 N P + E+ Y +L+G + ++ YF Y+A+ D E++I D +NW+K+NP++ KL Sbjct: 241 NGPCYK-EWEYCKNVLEGIVNNDEYFIYIAQMDVEDDIWDPNNWLKANPLVA------KL 293 Query: 316 MDYLRTRRRVSLETGE-----INKVLIKNFNMWRQSSEESYIDKQSWEL--AQIDKPDTY 368 L +R + E+ + + L K+ N+W + S + YI W++ +++ + Sbjct: 294 PKGLENLKRFAEESKQKGGDDLKNFLTKSLNIWYEFSNDQYIGPSVWKVGASKLTLENFK 353 Query: 369 KRRVWLGVDVGRVSDLFAISSVIMMD---------DYWYLDSFSFVATKYGLTAKEKRDG 419 + + G+D+ DL +++ + + +++ S SF+ K + + D Sbjct: 354 GKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIP-KRRVAEHIQSDD 412 Query: 420 VSYSNLERQGYCEITTLESGVIDDER-VLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMI 478 V Y G +T G+ D + +++ + +++ + ++ + +DP+ T L + Sbjct: 413 VPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNADTFLQDL 472 Query: 479 EKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHS-GNPLLTMAVNNAYIKTDNNG- 536 E+ + +E+ Q+ LN PT+ F+ + + G I+++ N LL+ +V NA + +++NG Sbjct: 473 EELG--FDCVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVNAKLVSNSNGE 530 Query: 537 MRIDKNKNSNKIDPLDAALDGYAVCY 562 ++IDKN +IDP+DA +D Y + + Sbjct: 531 IKIDKNLQEKRIDPVDAVIDAYKLAF 556 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 241 bits (616), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 171/574 (29%), Positives = 288/574 (50%), Gaps = 29/574 (5%) Query: 4 EYDYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEK 63 E+D+S + Y+DD Y ++ +I + + AC RHL DL+R ++DF + Y + Sbjct: 17 EFDFSDVAKKYQDDGTKYCFDALEGRIVTGYMIKLACFRHLRDLQRQGNDDFPYTYDTAE 76 Query: 64 AADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGK 123 A + F I P+V TG+P L +QKFI+ L+GWR + +RF +A++SV R GK Sbjct: 77 ADKLLRFARICPNVDTGEPTQLMPWQKFILCMLFGWRNA--NGGKRFSRAIVSVGRGQGK 134 Query: 124 TILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA--KDVDVRKA 181 T L+A + Y + F + +S Q D I + K L +++ K + ++ Sbjct: 135 TYLMAILTAYSY-FIESFGLSNQ------DYLVTSIKFKQTNKLLGYIKSMMKQIIQKEP 187 Query: 182 TKIVRDELK-NLHDESYI--------RALSRDTGAVDGFEPYVGVLDEFAASKTNEMLEL 232 K + +E + LH + I RA+S ++G D F + DE +T + Sbjct: 188 FKSLANETELGLHSDQVIMKANNNILRAISAESGQYDSFHFTTAIFDEMGEIETRNAVSK 247 Query: 233 LESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITD-EGYFGYVAEQDNEE 291 + SGQ ++ N + ISTA + +VP + + D + + + Y V QDN E Sbjct: 248 IVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLVWSQDNLE 307 Query: 292 EIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESY 351 E+ W+KSNP+L++E D LM L +R L +G ++ +KN N W + S+ Sbjct: 308 EVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWLLADSNSF 367 Query: 352 IDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMM-----DDYWYLDSFSFVA 406 +D + E A ID D +RV++G+D SD A+ V W+++ SF+ Sbjct: 368 LDLKDIENAVIDDFDIKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIP 427 Query: 407 TKYG--LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGI 464 + + AK ++DG++Y +LE +G+C IT+ G+I+ E V + V N +V Sbjct: 428 WQQAGSIEAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFF 487 Query: 465 CFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMA 524 +D ++ +E + +PL+ + Q T L PTK + +G I + ++ A Sbjct: 488 GYDAMMVNKIIKALES-NTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKA 546 Query: 525 VNNAYIKTDNNGMRIDKNKNSNKIDPLDAALDGY 558 + NA IK DN G+++DK K++ KID +DA +D + Sbjct: 547 LINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAF 580 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 239 bits (610), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 169/565 (29%), Positives = 285/565 (50%), Gaps = 17/565 (3%) Query: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 +Y I + Y+D A YA V+DE+ + + AC RHL DLKRI +EDF F Y + Sbjct: 29 NYEDIREEYQDPATKYAFDVLDEKYTTGYLMQLACFRHLQDLKRIGNEDFPFNYEVKHVK 88 Query: 66 DPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 + F ++ P+V T +P L +QKF++ L GWR K +RF +A+ISV R GKT Sbjct: 89 RLMKFSKMAPNVDTMEPTKLMEWQKFMLSLLIGWRNK--EGGKRFSRAIISVGRGQGKTY 146 Query: 126 LIAGILLYEFLFGHNPSMSRQLFCTAN-DRTQAKIAWDMAKKQLSSLRA----KDVDVRK 180 ++A ++ Y F F + +S Q F ++ + Q + K ++ LR K++ + Sbjct: 147 MLAILMAYSF-FVESRGLSNQDFLVSSINAKQTGKLYGYLKSMINVLRTINPWKNIADKT 205 Query: 181 ATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQL 240 + D++ + + IR +S + G D + + DE K+ E + + SGQ ++ Sbjct: 206 DLSLQADKIIMRNHNNVIRPISHEAGQYDSYHFTTAIFDEIGEVKSREKISKIVSGQVKV 265 Query: 241 DNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITD-EGYFGYVAEQDNEEEIKDESNW 299 N + ISTA D VP H E + + D + Y + D+ +E W Sbjct: 266 PNRQFVQISTAYPDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETW 325 Query: 300 IKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWEL 359 +KSNP+L++ + HD LM L +R + TG ++ KN NMW S +SY++ E Sbjct: 326 VKSNPLLDLASEHDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVEK 385 Query: 360 AQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMM-----DDYWYLDSFSFVATKYG--LT 412 A + + + Y +R ++GVD SD A++ V W+++ SF+ + + Sbjct: 386 AIVPEFNIYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIE 445 Query: 413 AKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFG 472 AKEK+DG++Y LE +G+C IT+ + G+I+D+ E I + N +V +D Sbjct: 446 AKEKQDGINYRELETKGFCTITSHQQGLINDDEFYEWIVNYIEENSLDVLFFGYDAMGVT 505 Query: 473 TLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT 532 ++ M+ + + L + Q T L PTK + +G I + ++ A+ NA ++ Sbjct: 506 KVIQML-LNNTGFNLQPIRQRTGELAKPTKFLQKIFVEGTISRLDDKIMEKALLNAVLRE 564 Query: 533 DNNGMRIDKNKNSNKIDPLDAALDG 557 D+ G+++DK K + KID +DA +D Sbjct: 565 DSVGIQVDKRKATLKIDVVDAIIDA 589 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 226 bits (575), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 171/569 (30%), Positives = 283/569 (49%), Gaps = 22/569 (3%) Query: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 D+S I Y+D YA V+D KS A RHL DL+RI EDF + Y ++ Sbjct: 40 DFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIK 99 Query: 66 DPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 + + ++P+V TG+P L +QKFI+ L GWR +RF A+ISV+R GKT Sbjct: 100 NLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWR--NSEGGKRFTVAIISVSRGQGKTY 157 Query: 126 LIAGILLYEFLFGHNPSMSRQ--LFCTANDRTQAKI---AWDMAKKQLSSLRAKDVDVRK 180 ++A +++Y FLF + +S Q L + N + +K+ M K + K + Sbjct: 158 ILAILMVYSFLF-ESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAET 216 Query: 181 AT---KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQ 237 I+ DE+ + IRA+S + G D F + DE E + + SGQ Sbjct: 217 GLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQ 276 Query: 238 GQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEG--YFGYVAEQDNEEEIKD 295 ++N + IST+ D +VP + + + ++ + E V QD+ E + Sbjct: 277 VMVENHQFVQISTSYPDPSVPFRK-DQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFE 335 Query: 296 ESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQ 355 W+KSNP+LE+E D L+ L +R L G ++ KN NMW Q +SY++ Sbjct: 336 PETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLA 395 Query: 356 SWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVI-MMDD----YWYLDSFSFVATKYG 410 E A I + + +R ++G+D +SD AI+ V +DD W+++ SFV + Sbjct: 396 DVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 455 Query: 411 --LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDP 468 + AKEK+DG++Y LE+ G+C +T+ + G+I+D+ V E I + N +V +D Sbjct: 456 GSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDA 515 Query: 469 YQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNA 528 ++ M+ + + L + Q T L PTK + +G I + ++ ++ NA Sbjct: 516 MGITKVIQML-MNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 574 Query: 529 YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 ++ D+ G+++DK K + KID +DA +D Sbjct: 575 VLREDSIGIQVDKRKATLKIDVVDAIIDA 603 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 225 bits (573), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 171/569 (30%), Positives = 282/569 (49%), Gaps = 22/569 (3%) Query: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 D+S I Y+D YA V+D KS A RHL DL+RI EDF + Y ++ Sbjct: 37 DFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIK 96 Query: 66 DPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 + + ++P+V TG+P L +QKFI+ L GWR +RF A+ISV+R GKT Sbjct: 97 NLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNS--EGGKRFTVAIISVSRGQGKTY 154 Query: 126 LIAGILLYEFLFGHNPSMSRQ--LFCTANDRTQAKI---AWDMAKKQLSSLRAKDVDVRK 180 ++A +++Y FLF + +S Q L + N + +K+ M K + K + Sbjct: 155 ILAILMVYSFLF-ESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAET 213 Query: 181 AT---KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQ 237 I+ DE+ + IRA+S + G D F + DE E + + SGQ Sbjct: 214 GLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQ 273 Query: 238 GQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEG--YFGYVAEQDNEEEIKD 295 + N + IST+ D +VP + + + ++ + E V QD+ E + Sbjct: 274 VLVKNHQFVQISTSYPDPSVPFRK-DQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFE 332 Query: 296 ESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQ 355 W+KSNP+LE+E D L+ L +R L G ++ KN NMW Q +SY++ Sbjct: 333 PETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLA 392 Query: 356 SWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVI-MMDD----YWYLDSFSFVATKYG 410 E A I + + +R ++G+D +SD AI+ V +DD W+++ SFV + Sbjct: 393 DVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRA 452 Query: 411 --LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDP 468 + AKEK+DG++Y LE+ G+C +T+ + G+I+D+ V E I + N +V +D Sbjct: 453 GSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDA 512 Query: 469 YQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNA 528 ++ M+ + + L + Q T L PTK + +G I + ++ ++ NA Sbjct: 513 MGITKVIQML-MNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNA 571 Query: 529 YIKTDNNGMRIDKNKNSNKIDPLDAALDG 557 ++ D+ G+++DK K + KID +DA +D Sbjct: 572 VLREDSIGIQVDKRKATLKIDVVDAIIDA 600 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 220 bits (561), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 162/548 (29%), Positives = 281/548 (51%), Gaps = 24/548 (4%) Query: 19 FYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK 78 F Y + +++ +I S KK A R + D + ED F + E A D F + V+ Sbjct: 9 FAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVE 68 Query: 79 ---TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 G+ L FQ F+ N++G++KK + + RRFRK I +ARKN K+ +A + + Sbjct: 69 GILAGESVELTDFQLFLAANIFGFKKKINGA-RRFRKVFIQLARKNAKSQFLAIVAAFCT 127 Query: 136 LFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDE 195 G ++ + R Q+ ++ K +SS + ++A + + KN Sbjct: 128 FLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTI-EIFKNGSVV 183 Query: 196 SYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDL 255 + +R TG DG P +G++DE+ A +T+E+ ++L SG P + II+TAG DL Sbjct: 184 VPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 256 NVPMHTIEYPYITKILD--GEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHD 313 + P + EY Y++ ILD + ++ YF + E + ++IKDESNWIK+NPI+ A ++ Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV---ATYE 297 Query: 314 KLMDYLRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRV 372 + ++ +R+ +V+L+ E + L KN N+W + Y+D W+ ++D D + Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTLDFSGATL 357 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 W+G D+ +DL ++ V M D+ ++ + L K D V Y QGY Sbjct: 358 WIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYL- 416 Query: 433 ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQ 492 TL G + D ++E E ++ + E+ +D + L +E + + +E+ Q Sbjct: 417 --TLTPGEMVDYTIVESWIEN-FSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQ 471 Query: 493 TTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNN-GMRIDKNKNSNKIDPL 551 L++PTK FR+ + + K+KH+G+P+L A+NNA +K D+ + I K + N+IDP Sbjct: 472 RIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 552 DAALDGYA 559 A L+ +A Sbjct: 532 AAVLNAFA 539 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 220 bits (561), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 162/548 (29%), Positives = 281/548 (51%), Gaps = 24/548 (4%) Query: 19 FYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK 78 F Y + +++ +I S KK A R + D + ED F + E A D F + V+ Sbjct: 9 FAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVE 68 Query: 79 ---TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 G+ L FQ F+ N++G++KK + + RRFRK I +ARKN K+ +A + + Sbjct: 69 GILAGESVELTDFQLFLAANIFGFKKKINGA-RRFRKVFIQLARKNAKSQFLAIVAAFCT 127 Query: 136 LFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDE 195 G ++ + R Q+ ++ K +SS + ++A + + KN Sbjct: 128 FLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTI-EIFKNGSVV 183 Query: 196 SYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDL 255 + +R TG DG P +G++DE+ A +T+E+ ++L SG P + II+TAG DL Sbjct: 184 VPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 256 NVPMHTIEYPYITKILD--GEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHD 313 + P + EY Y++ ILD + ++ YF + E + ++IKDESNWIK+NPI+ A ++ Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV---ATYE 297 Query: 314 KLMDYLRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRV 372 + ++ +R+ +V+L+ E + L KN N+W + Y+D W+ ++D D + Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDFSGATL 357 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 W+G D+ +DL ++ V M D+ ++ + L K D V Y QGY Sbjct: 358 WIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYL- 416 Query: 433 ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQ 492 TL G + D ++E E ++ + E+ +D + L +E + + +E+ Q Sbjct: 417 --TLTPGEMVDYTIVESWIEN-FSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQ 471 Query: 493 TTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNN-GMRIDKNKNSNKIDPL 551 L++PTK FR+ + + K+KH+G+P+L A+NNA +K D+ + I K + N+IDP Sbjct: 472 RIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 552 DAALDGYA 559 A L+ +A Sbjct: 532 AAVLNAFA 539 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 219 bits (558), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 161/547 (29%), Positives = 280/547 (51%), Gaps = 24/547 (4%) Query: 19 FYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK 78 F Y + +++ +I S KK A R + D + ED F + E A D F + V+ Sbjct: 9 FAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVE 68 Query: 79 ---TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 G+ L FQ F+ N++G++KK + + RRFRK I +ARKN K+ +A + + Sbjct: 69 GILAGESVELTDFQLFLAANIFGFKKKINGA-RRFRKVFIQLARKNAKSQFLAIVAAFCT 127 Query: 136 LFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDE 195 G ++ + R Q+ ++ K +SS + ++A + + KN Sbjct: 128 FLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTI-EIFKNGSVV 183 Query: 196 SYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDL 255 + +R TG DG P +G++DE+ A +T+E+ ++L SG P + II+TAG DL Sbjct: 184 VPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 256 NVPMHTIEYPYITKILD--GEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHD 313 + P + EY Y++ ILD + ++ YF + E + ++IKDESNWIK+NPI+ A ++ Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV---ATYE 297 Query: 314 KLMDYLRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRV 372 + ++ +R+ +V+L+ E + L KN N+W + Y+D W+ ++D D + Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTXDFSGATL 357 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 W+G D+ +DL ++ V M D+ ++ + L K D V Y QGY Sbjct: 358 WIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYL- 416 Query: 433 ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQ 492 TL G + D ++E E ++ + E+ +D + L +E + + +E+ Q Sbjct: 417 --TLTPGEMVDYTIVESWIEN-FSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQ 471 Query: 493 TTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNN-GMRIDKNKNSNKIDPL 551 L++PTK FR+ + + K+KH+G+P+L A+NNA +K D+ + I K + N+IDP Sbjct: 472 RIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 552 DAALDGY 558 A L+ + Sbjct: 532 AAVLNAF 538 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 219 bits (558), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 167/571 (29%), Positives = 283/571 (49%), Gaps = 21/571 (3%) Query: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 D+S I Y D A YA V++ + K+ A RHL DL+R DF + Y ++A Sbjct: 19 DWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEAN 78 Query: 66 DPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 + F +I P+V TG+P L +Q+F ++GWR K ++ +RF + + SVAR GKT Sbjct: 79 RLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNN--KRFTRVIDSVARGQGKTY 136 Query: 126 LIAGILLYEFLFGHNPSMSRQ--LFCTANDRTQAKI---AWDMAKKQLSSLRAKDVDVRK 180 +A ++ Y FL + +S Q L + N + K+ M +K + K Sbjct: 137 QMAILVCYSFLI-ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEV 195 Query: 181 ATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQL 240 I D++ + + +RA+S + G D + + DE K+ E + + SGQ ++ Sbjct: 196 NLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKV 255 Query: 241 DNPFILIISTAGMDLNVPMHTIEYPYITKI-LDGEITDEGYFGYVAEQDNEEEIKDESNW 299 N + IST+ D VP H + I + D + + Y G + QD+ +E W Sbjct: 256 SNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETW 315 Query: 300 IKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWEL 359 +KSNP+L++ D L+ L +R L TG I+ KN N+W + S +SY++ + E Sbjct: 316 VKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVED 375 Query: 360 AQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDD-YWYLDSFSFVATKYG--LTAKEK 416 A + + V++G D SD A+S V DD ++++ SF+ + + AKEK Sbjct: 376 AVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEK 435 Query: 417 RDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL-- 474 +DG++Y N YC IT G+I+ E++ + + V ++ +V +D +FG+ Sbjct: 436 QDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYD--RFGSYQV 491 Query: 475 --LTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT 532 +T + +W ++++ Q T L PTK ++ K+ +P++ A+ NA IK Sbjct: 492 KNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKA 551 Query: 533 DNNGMRIDKNKNSNKIDPLDAALDG-YAVCY 562 D G+ +DK+K + +ID +DA +D Y Y Sbjct: 552 DKIGIHVDKDKATLQIDVVDAIIDALYQAMY 582 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 219 bits (558), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 161/548 (29%), Positives = 281/548 (51%), Gaps = 24/548 (4%) Query: 19 FYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK 78 F Y + +++ +I S KK A R + D + ED F + E A D F + V+ Sbjct: 9 FAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVE 68 Query: 79 ---TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 G+ L FQ F+ N++G++KK + + RRFRK I +ARKN K+ +A + + Sbjct: 69 GILAGESVELTDFQLFLAANIFGFKKKINGA-RRFRKVFIQLARKNAKSQFLAIVAAFCT 127 Query: 136 LFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDE 195 G ++ + R Q+ ++ K +SS + ++A + + KN Sbjct: 128 FLGDE---KQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTI-EIFKNGSVV 183 Query: 196 SYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDL 255 + +R TG DG P +G++DE+ A +T+E+ ++L SG P + II+TAG DL Sbjct: 184 VPLSKEARKTG--DGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 256 NVPMHTIEYPYITKILD--GEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHD 313 + P + EY Y++ ILD + ++ YF + E + ++IKDESNWIK+NPI+ A ++ Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV---ATYE 297 Query: 314 KLMDYLRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRV 372 + ++ +R+ +V+L+ E + L KN N+W + Y+D W+ ++D D + Sbjct: 298 EGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDFSGATL 357 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 W+G D+ +DL ++ V M D+ ++ + L K D V Y QGY Sbjct: 358 WIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYL- 416 Query: 433 ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQ 492 TL G + D ++E E ++ + E+ +D + L +E + + +E+ Q Sbjct: 417 --TLTPGEMVDYTIVESWIEN-FSKDKEIQEFDYDKWNALHLAQNLENKG--FVCVEIPQ 471 Query: 493 TTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNN-GMRIDKNKNSNKIDPL 551 L++PTK FR+ + + K+KH+G+P+L A+NNA +K D+ + I K + N+IDP Sbjct: 472 RIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPA 531 Query: 552 DAALDGYA 559 A L+ ++ Sbjct: 532 AAVLNAFS 539 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 214 bits (544), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 170/583 (29%), Positives = 284/583 (48%), Gaps = 57/583 (9%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINF---IEILPDV 77 Y+ ++D +I + K+ +AC R LNDL+R++ +DF++ + E+A + + V Sbjct: 12 YSNSILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHSKGV 71 Query: 78 KTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 GKP L + KF++ N+ W+ K D + RRFR A I VARKN K+ L AG+ YE Sbjct: 72 LEGKPIILNSWAKFVVCNIEAWKHK-DTNYRRFRFAFIQVARKNQKSQLEAGMAGYEI-- 128 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWD----MAKKQLSSLRAKDVDVRKATKIVRDELKNLH 193 G + +++ +R QAKI ++ MA K L +K K + +K+ Sbjct: 129 GAKGYNAAEVYTLGVERDQAKIVFEEWELMASKPL----------KKRFKFTQKVIKHKK 178 Query: 194 DESYIRALSRDTGAV-DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAG 252 S+I+ LS+ G DG P + V+DE+ A ++M ++++SG P ++II+TAG Sbjct: 179 SNSFIKHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAG 238 Query: 253 MDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALH 312 D EY ILDG +E YF + E ++E++ DE WIK+NP+L + Sbjct: 239 EDYEETACYYEYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANPVL---CTY 295 Query: 313 DKLMDYLRTRRRVSLETGEINK---VLIKNFNMWRQSSEESYIDKQSWELAQ--IDKPDT 367 ++ ++ +R ++ T K L KN N++ + E+ Y+D + W+ + I Sbjct: 296 EEGIESMRQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKENITLEKF 355 Query: 368 YKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSF---------SFVATKYGLTAKEKRD 418 ++G+D+ + DL +I+ ++ YLD SF+ + + K K D Sbjct: 356 RGHDCYIGMDLSKSGDLTSIAF-----EFPYLDEGIRKYALFGKSFIPAEV-VKEKMKTD 409 Query: 419 GVSY---SNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLL 475 V Y S+ E+ + E ++D +L IE +V E V + +DP+ L+ Sbjct: 410 NVPYNIWSSKEKGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSYDPHGAAMLV 469 Query: 476 TMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNN 535 + +E+R ++ +E Q+ LN T FRD +K +I H N L+T V NA T++ Sbjct: 470 SELERR--DYNCVECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSF 527 Query: 536 G-MRIDKNKNSNKIDPLDAALDGYAVCYLEPFDGSGYWTNEKI 577 G ++I K +IDPL A C YW E + Sbjct: 528 GEIKISKKSRFKRIDPL-------ASCIFAHNRAMTYWNRENL 563 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 212 bits (539), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 168/569 (29%), Positives = 275/569 (48%), Gaps = 22/569 (3%) Query: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 D+S I YKD Y V+D +I + + AC RHL DL+R ++DF +VY E Sbjct: 20 DFSFIRKKYKDAGTRYCFDVLDGKIVAGYNIRLACFRHLRDLQRQGNKDFPYVYSIEAFN 79 Query: 66 DPINFIEILPDVK--TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGK 123 + F+ ++P+V + K P+ +Q FI ++ W + + RF +IS+AR GK Sbjct: 80 RFLKFLSLVPNVDDLSQKLEPMD-WQLFIFSQIFAWFDLDN--VPRFSNIIISIARSQGK 136 Query: 124 TILIAGILLYEFLFGHNPSMSRQLFCTAN---DRTQAKIAW--DMAKKQLSSLRAKDVDV 178 T +IAGI L S Q F ++ D+T + M + + + K + Sbjct: 137 T-MIAGICLNFSYLIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAE 195 Query: 179 RKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQG 238 ++ E+K+L D + I +S ++G D + V DE +T+E + + SGQ Sbjct: 196 ETQLQLYSREIKSLLDANTINTISFESGKFDSKHFKLAVADEVGELRTDEGISKITSGQV 255 Query: 239 QLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEG--YFGYVAEQDNEEEIKDE 296 + + IST+ +VP H E + +I++ + G + QDN EE+ Sbjct: 256 NTEGSRFIEISTSYQTPDVPFHQ-EQKKLIEIMERDFDRSGDDQLCLIWSQDNLEEVFKP 314 Query: 297 SNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQS 356 W KSNP+L L + LM L + R L G++ +KN N W + S++D Sbjct: 315 ETWAKSNPLLNHPELKEGLMKGLLSERDKKLLMGKLADFQVKNMNCWLLADSNSFLDLTD 374 Query: 357 WELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMM-----DDYWYLDSFSFVATKYG- 410 E A I + D +RV++G+D SD AI V W+++ SF+ + Sbjct: 375 IENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAG 434 Query: 411 -LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPY 469 L AK ++DGV+Y +LE +GYC IT+ G+I+ E V + V N +V +D Sbjct: 435 SLEAKMEQDGVNYRDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDNALDVVFFGYDAM 494 Query: 470 QFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 ++ +E + +PL+ + Q T L PTK + +G I + ++ A+ NA Sbjct: 495 GVSKIIKALES-NTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV 553 Query: 530 IKTDNNGMRIDKNKNSNKIDPLDAALDGY 558 IK DN G+++DK K++ KID +DA +D + Sbjct: 554 IKEDNIGIQVDKMKSTYKIDVVDALIDAF 582 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 208 bits (529), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 176/600 (29%), Positives = 289/600 (48%), Gaps = 45/600 (7%) Query: 4 EYDYSAIGDIYKDDAFYYA-KMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPE 62 + DY + D Y D YA ++ ++ + + V AC+RHLNDL RI ++DF + Y Sbjct: 21 QSDYQKLLDKYHDPGTRYAYDVMFTDKYMTGRDVQLACIRHLNDLLRIGNDDFPYQY--- 77 Query: 63 KAADPINFIEIL------PDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMIS 116 ++D +N IE PD + K P +Q FI+ +L GWR + + RF + IS Sbjct: 78 -SSDMVNAIEYFSRLLPNPDDTSKKIQPFK-WQSFILDSLIGWRTVDNGT--RFTTSNIS 133 Query: 117 VARKNGKTILIAGILL--YEFLFGHNPSMSRQLFCTANDRTQAKIAWDMA--KKQLSSLR 172 +AR+ GKT L A IL+ Y F+ N + L + + K+ D++ K + SL Sbjct: 134 IARQQGKTWL-ASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLP 192 Query: 173 AKDVDVR------KATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKT 226 D R + T+++ KN IR + G D F + V DE + Sbjct: 193 EFADDARERGVEAQTTQVIAKNTKNT-----IRKGTSQGGGFDSFHNAIAVYDEIGNLRP 247 Query: 227 --NEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITD-EGYFGY 283 NE L+ + SGQ + N + ISTA D+ V E I + D + F Sbjct: 248 ALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQV 307 Query: 284 VAEQDNEEEIKDESNWIKSNP-ILEV-EALHDKLMDYLRTRRRVSLETGEINKVLIKNFN 341 + QD+E+E+ + W KSNP +LE+ ++ D L + L R + G + + K+ N Sbjct: 308 IYSQDSEDEVFEPETWAKSNPNLLELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLN 367 Query: 342 MWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDY----W 397 +W + + SY+ + + + ID+ D R V++G D + +D + + D+ + Sbjct: 368 LWSRRFQNSYLSLDNIQRSIIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMF 427 Query: 398 YLDSFSFV--ATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVY 455 ++ SF+ A + AK K+DG+ Y L+ +G+ +IT L SGVI+ ++V + + + V Sbjct: 428 HVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTDQVYQWLVDYVN 487 Query: 456 TNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKH 515 + +V I DP L +E P+W + T+ LN PTK F++ G I Sbjct: 488 QHRLKVKFIIADPNHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNISM 547 Query: 516 SGNPLLTMAVNNAYIKTDNNG-MRIDK-NKNSNKIDPLDAALDGYAVC--YLEPFDGSGY 571 +PLL +NNA + D G ++ID+ N+ S+ ID DA ++ +A Y E + GY Sbjct: 548 LNDPLLIDGLNNAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFENYHDEGY 607 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 207 bits (527), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 177/600 (29%), Positives = 285/600 (47%), Gaps = 45/600 (7%) Query: 4 EYDYSAIGDIYKDDAFYYA-KMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPE 62 + DY + D Y D YA ++ + + + V AC+RHLNDL RI ++DF + Y Sbjct: 20 QSDYQGLFDKYHDPGTRYAYDVMFTNKYMTGRDVQLACIRHLNDLLRIGNDDFPYQY--- 76 Query: 63 KAADPINFIEIL------PDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMIS 116 +D +N IE PD + K P +Q FI+ +L GWR T + RF + IS Sbjct: 77 -NSDMVNAIEYFSRLLPNPDDTSKKIQPFK-WQSFILDSLIGWR--TIDNGTRFTTSNIS 132 Query: 117 VARKNGKTILIAGILL--YEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAK 174 +AR+ GKT L A IL+ Y F+ N + L + + K+ D++ + + L Sbjct: 133 IARQQGKTWL-ASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLP 191 Query: 175 DV--DVR------KATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKT 226 D D R + T+++ KN IR + G D F + V DE + Sbjct: 192 DFADDARERGVEAQTTQVIAKNTKNT-----IRKGTSQGGGFDSFHNAIAVYDEIGNLRP 246 Query: 227 --NEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITD-EGYFGY 283 NE L+ + SGQ + N + ISTA D+ V E I + D + F Sbjct: 247 ALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQV 306 Query: 284 VAEQDNEEEIKDESNWIKSNP-ILEVE-ALHDKLMDYLRTRRRVSLETGEINKVLIKNFN 341 + QD+E+E+ + W KSNP +LE++ + D L L R + G + + K+ N Sbjct: 307 IYAQDSEDEVFEPETWAKSNPNLLELQKSKRDNLQKALNQDRNDNEREGTLETFVNKSLN 366 Query: 342 MWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDY----W 397 +W + + SY+ + + + ID D R V++G D + +D + + D+ + Sbjct: 367 LWSRRFQNSYLSLDNIQRSIIDHFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMF 426 Query: 398 YLDSFSFV--ATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVY 455 ++ SF+ A + AK K+DG+ Y L+ +G+ +IT L SGVI+ E+V + + + V Sbjct: 427 HVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTEQVYQWLVDYVN 486 Query: 456 TNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKH 515 + +V I DP L +E P+W + T+ LN PTK F++ G I Sbjct: 487 QHRLKVKFIIADPNHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNITM 546 Query: 516 SGNPLLTMAVNNAYIKTDNNG-MRIDK-NKNSNKIDPLDAALDGYAVC--YLEPFDGSGY 571 +PLL +NNA + D G ++ID+ N+ S+ ID DA ++ +A Y E + GY Sbjct: 547 LNDPLLIDGLNNAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFENYHDEGY 606 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 180 bits (456), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 130/425 (30%), Positives = 211/425 (49%), Gaps = 28/425 (6%) Query: 29 QIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAAD------PINFIEILPDVKTGKP 82 +++ +K A R D+ R+ ++D + + E D N +E + G+P Sbjct: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVE---GILAGQP 65 Query: 83 YPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPS 142 L FQ FI N+YG+ KK ++ RRFRKA I +ARKN K+ +A I YE P+ Sbjct: 66 IELTDFQLFIAANIYGFYKK-ENGARRFRKAYIQLARKNAKSQFLALIASYEIF----PT 120 Query: 143 MSR-QLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRAL 201 + ++F R Q+ + +QL ++ +K S I+ L Sbjct: 121 QEKHRVFIAGWSREQSDEVYQAILEQLHHAPI----LKGKYTSANGRVKKYKTNSIIQPL 176 Query: 202 SRDTGAV-DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 SR+ + DG P +G++DE+ A +T+E+ ++L+SG +P + +I+TAG ++ P Sbjct: 177 SREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCF 236 Query: 261 TIEYPYITKILDGEITDEG--YFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDY 318 EY Y +KILD +I E YF + E D E++IKDESNWIK+NPI+ A + + M+ Sbjct: 237 K-EYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV---ATYPEGMES 292 Query: 319 LRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVD 377 LR+ +V+LE E + L KN N W + Y+ W + PD V+LG+D Sbjct: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLD 352 Query: 378 VGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLE 437 + +DL ++ V + D ++Y+ SF+ K D V Y G+ T+ E Sbjct: 353 LSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARA-NEKMATDKVPYDLWREMGFITYTSGE 411 Query: 438 SGVID 442 +I+ Sbjct: 412 ELIIN 416 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 169 bits (427), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 149/566 (26%), Positives = 253/566 (44%), Gaps = 37/566 (6%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK-- 78 YA+ +VD +I + + + AC RH +DLK+ D+++ + + + A F+++LP Sbjct: 13 YARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQLLPHSSGE 72 Query: 79 -TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 G+ L +Q FI +++GW K D RRFR+A I VARKNGK+ AG+ +Y F Sbjct: 73 LAGQKLKLEPWQSFIFCSIFGWVTKKDKK-RRFREAYIRVARKNGKSFFAAGVGIYTFCA 131 Query: 138 -GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDES 196 G N S +++C A QAK + A++ S L A + R + D L D S Sbjct: 132 DGEN---SAEVYCGATTMAQAKKVFTPARQMASRLPA--LRSRFDISVWTDSLTR-PDGS 185 Query: 197 YIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLN 256 ++ G DG P+ ++DE+ T+ M E + G G P LII+TAG L Sbjct: 186 VFAPMAGKPG--DGDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSSLE 243 Query: 257 VPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLM 316 P + + + + ++G +E FG + E D ++ D N IK+NP L V + L+ Sbjct: 244 SPCYDKDKE-VKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYSDLV 302 Query: 317 DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ---IDKPDTYKRRVW 373 + L ++V ++N K N+W S + ++ + + W+ A+ + D Sbjct: 303 ELLEVAKQVPR---KVNAFKTKRLNIW-VSGKSAFYNMEQWKAAEDKNLKLEDFANDTCN 358 Query: 374 LGVDVGRVSDLFA----ISSVIMMDDYWYLDSFSFVA---TKYGLTAKEKRDGVSYSNLE 426 +G+D+ + D+ A + I ++Y F T + K + Y Sbjct: 359 VGLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLLKTADRYQKFY 418 Query: 427 RQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWP 486 G E T + D +L I +M E ++ I DP L +E + Sbjct: 419 EMGALEAT--DGAEADYREILASILDM--QGENRIDEIDIDPAGATALRHQLEDYG--FT 472 Query: 487 LIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNA---YIKTDNNGMRIDKNK 543 ++++ Q ++ K+ L G+ H GNP+LT ++N +I ++ +R K Sbjct: 473 VVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDLVRPTKGD 532 Query: 544 NSNKIDPLDAALDGYAVCYLEPFDGS 569 N +KID A + L G Sbjct: 533 NQSKIDGATALFNAMTRAMLNESSGG 558 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 159 bits (402), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 146/567 (25%), Positives = 264/567 (46%), Gaps = 48/567 (8%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK-- 78 YA+ VV +I+ + V AC RHL+DL+ +++ F + +KA FI++LP K Sbjct: 9 YARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKGE 68 Query: 79 ---TGKPYPLAMFQKFIIGNLYGW-RKKTDHSLRRFRKAMISVARKNGKTILIAGILLYE 134 P L +Q F I ++GW RKK+ LRRFR+A + RKNGK+ + AG+ LY Sbjct: 69 WAFKRMPITLEPWQLFCICVVFGWVRKKS--GLRRFREAYNEIPRKNGKSAMSAGVGLY- 125 Query: 135 FLFGHNPSMSRQLFCTANDRTQAKIAWDMAK-KQLSSLRAKDVDVRKATKIVRDELKNLH 193 +F + +++ A T K AW++ + +L + R + + ++ + Sbjct: 126 -MFACDDEFGAEVYSGA---TTEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQSMSRPE 181 Query: 194 DESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGM 253 D + L D G DG P ++DE+ +T+ + + +++G G P I I+TAG Sbjct: 182 DGARFEPLIGDPG--DGASPSCALIDEYHEHQTDALYQTMQTGMGARRQPLIFGITTAGY 239 Query: 254 DLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHD 313 ++ P + I ++L+G + ++ FG + D+ ++ D + K+NP + + Sbjct: 240 NIEGPCYDKRREVI-EMLEGIVPNDELFGIIYTIDDGDDWTDPAVLRKANPNMGISVYS- 297 Query: 314 KLMDYLRTRRRVSLETG-EINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKR-- 370 DYL +++R ++ ++ K+ N+W ++++++ + +W+ + D+ T +R Sbjct: 298 ---DYLLSQQRAAINNPRKVGVFKTKHLNIW-VAAKDAFFNLVNWQKCE-DRSLTLERFE 352 Query: 371 --RVWLGVDVGRVSDLFAISSVIMMD-----DYWYLDSFSFVA--TKYGLTAKEKRDGVS 421 L D+ R DL A+ + + Y+ + FV T Y + R Sbjct: 353 GHTCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAER 412 Query: 422 YSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMI--E 479 Y G+ IT + ID +LE +E N E + I DP+ L + E Sbjct: 413 YQKWVEGGF--ITVTDGAEIDYREILESAKEANRLNAVEESPI--DPHGATNLSHHLADE 468 Query: 480 KRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNA---YIKTDNNG 536 +P I + Q ++ P K+ ++ G+ H GNP++T ++N +I D++ Sbjct: 469 NLNP----ITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDV 524 Query: 537 MRIDKNKNSNKIDPLDAALDGYAVCYL 563 +R K N NKID A + C L Sbjct: 525 VRPIKQGNENKIDGAVALIMAIGRCML 551 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 159 bits (402), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 140/553 (25%), Positives = 249/553 (45%), Gaps = 37/553 (6%) Query: 16 DDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILP 75 D A YA VV I + + V AC R LNDL R D+D+ +V+ KA + F++++P Sbjct: 5 DIARQYASDVVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMP 64 Query: 76 DVK-----TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGI 130 K + +Q FI N++GW K+ D RRFR+A + RKNGK+ +A Sbjct: 65 HTKGKWSASKSKLVFEPWQVFIEANIFGWVKR-DTGKRRFREAYEEIPRKNGKSARLAAR 123 Query: 131 LLYEFLFGHNPSMSRQLFCTANDRTQA----KIAWDMAKKQLSSLRAKDVDVRKATKIVR 186 +Y LF + +++ A QA + AW MA K L +LR + + Sbjct: 124 GIY--LFAADGESGAEVYSGATTEKQAFEVFRPAWMMAHK-LENLRNRFGIELSGNQKNP 180 Query: 187 DELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFIL 246 + + D S + + G DG P+ ++DE+ T+ +++ +++G G + P + Sbjct: 181 GPMFVMEDMSKFETVIGNPG--DGASPHAALVDEYHEHDTDALVDTMQTGMGAREQPLLS 238 Query: 247 IISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPIL 306 II+TAG +L P H I +IL+G+ DE FG + D ++ D ++ IK+NP Sbjct: 239 IITTAGSNLGGPCHEKRRDVI-RILEGQTIDETIFGIIYTIDEDDPWDDPASLIKANPNY 297 Query: 307 EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQID--K 364 V D L+ L+ +R + N K+ N W + +++ +W+ + D Sbjct: 298 GVSVFPDFLLAQLQQAKR---SASKQNAFRTKHLNQW-VGARTVWMNMLAWQRQKRDFTI 353 Query: 365 PDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSN 424 D R W+ +D+ D+ A+ + +Y ++ + Y N Sbjct: 354 ADMAGCRCWMALDLASKKDVAALVMLFEKAGQFY------CIPRFYAPEAAAEENEKYQN 407 Query: 425 LERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPE 484 +G+ +T G + D +E + + + ++ FD +Q L+T + + Sbjct: 408 FALEGHLVLT---PGSMTDYAFIEA-DILDLAKQIDLQDAAFDDWQANYLITRLS--NTS 461 Query: 485 WPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKN 544 P+++ +QT ++ P K+ + + H GNP++T + N K D + +N Sbjct: 462 IPVVDFNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKIDAKENIYPRKEN 521 Query: 545 SNKIDPLDAALDG 557 N DP + +DG Sbjct: 522 DN--DP-NCKIDG 531 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 159 bits (401), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 161/554 (29%), Positives = 261/554 (47%), Gaps = 46/554 (8%) Query: 20 YYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEIL--PDV 77 +YA+ V +IK+SK V K C RHL R + K+V+ E A PI FIE P Sbjct: 17 WYAEQVTQGKIKTSKYVRKECERHL----RYLENGGKWVFDEELAHRPIRFIEKFCKPSK 72 Query: 78 KTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 + + L +Q FIIG+L+GW K + LRRF++A+I + RKNGKT I+G+ Y Sbjct: 73 GSKRQLVLQPWQHFIIGSLFGWVHK-ETKLRRFKEALIFMGRKNGKTTTISGVANYAV-- 129 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 + ++ AN QA+I +D +K + + D + R +RDE+ S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFR----TLRDEIHYDATISK 185 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 I + D+ +DG ++G+ DE K +++ ++++ + P ++ I+TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 258 PM-HTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLM 316 P+ +E T LD I DE F Y+A D++++I D SNWIK+NP L V D++ Sbjct: 246 PLVDMVEAGRDT--LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMK 303 Query: 317 DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID----KQSWELAQIDKPDTYKRRV 372 + +R E G+ + K FN++ + E S+ID +++ E+ +++ + R Sbjct: 304 EEWEKAKRTPAERGDF---ITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEG--RPC 358 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 +G D+ D A + LD+ + K K V YSN E+ Y E Sbjct: 359 TIGYDLSETEDFTAACATFA------LDNGKVAVLSHSWIPKHK---VEYSN-EKIPYRE 408 Query: 433 ------ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWP 486 +T + ID + VL I +M + V I +D + E ++ + Sbjct: 409 WEEDGLLTVQDKPYIDYQDVLNWIIKM--NEHYVVEKITYD--RANAFKLNQELKNYGFE 464 Query: 487 LIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRI-DKNKNS 545 E Q + L+ K ++ GKI + NPL+ +NN +K D NG + K Sbjct: 465 TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRY 524 Query: 546 NKIDPLDAALDGYA 559 KID A L+ Y Sbjct: 525 RKIDGFAAFLNTYT 538 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 158 bits (400), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 161/554 (29%), Positives = 261/554 (47%), Gaps = 46/554 (8%) Query: 20 YYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEIL--PDV 77 +YA+ V +IK+SK V K C RHL R + K+V+ E A PI FIE P Sbjct: 17 WYAEQVTQGKIKTSKYVKKECERHL----RYLENGGKWVFDEELAHRPIRFIEKFCKPSK 72 Query: 78 KTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 + + L +Q FIIG+L+GW K + LRRF++A+I + RKNGKT I+G+ Y Sbjct: 73 GSKRQLVLQPWQHFIIGSLFGWVHK-ETKLRRFKEALIFMGRKNGKTTTISGVANYAV-- 129 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 + ++ AN QA+I +D +K + + D + R +RDE+ S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFR----TLRDEIHYDATISK 185 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 I + D+ +DG ++G+ DE K +++ ++++ + P ++ I+TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 258 PM-HTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLM 316 P+ +E T LD I DE F Y+A D++++I D SNWIK+NP L V D++ Sbjct: 246 PLVDMVEAGRDT--LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMK 303 Query: 317 DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID----KQSWELAQIDKPDTYKRRV 372 + +R E G+ + K FN++ + E S+ID +++ E+ +++ + R Sbjct: 304 EEWEKAKRTPAERGDF---ITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEG--RPC 358 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 +G D+ D A + LD+ + K K V YSN E+ Y E Sbjct: 359 TIGYDLSETEDFTAACATFA------LDNGKVAVLSHSWIPKHK---VEYSN-EKIPYRE 408 Query: 433 ------ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWP 486 +T + ID + VL I +M + V I +D + E ++ + Sbjct: 409 WEEDGLLTVQDKPYIDYQDVLNWIIKM--NEHYVVEKITYD--RANAFKLNQELKNYGFE 464 Query: 487 LIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRI-DKNKNS 545 E Q + L+ K ++ GKI + NPL+ +NN +K D NG + K Sbjct: 465 TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRY 524 Query: 546 NKIDPLDAALDGYA 559 KID A L+ Y Sbjct: 525 RKIDGFAAFLNTYT 538 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 158 bits (400), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 161/554 (29%), Positives = 261/554 (47%), Gaps = 46/554 (8%) Query: 20 YYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEIL--PDV 77 +YA+ V +IK+SK V K C RHL R + K+V+ E A PI FIE P Sbjct: 17 WYAEQVTQGKIKTSKYVKKECERHL----RYLENGGKWVFDEELAHRPIRFIEKFCKPSK 72 Query: 78 KTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 + + L +Q FIIG+L+GW K + LRRF++A+I + RKNGKT I+G+ Y Sbjct: 73 GSKRQLVLQPWQHFIIGSLFGWVHK-ETKLRRFKEALIFMGRKNGKTTTISGVANYAV-- 129 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 + ++ AN QA+I +D +K + + D + R +RDE+ S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFR----TLRDEIHYDATISK 185 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 I + D+ +DG ++G+ DE K +++ ++++ + P ++ I+TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 258 PM-HTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLM 316 P+ +E T LD I DE F Y+A D++++I D SNWIK+NP L V D++ Sbjct: 246 PLVDMVEAGRDT--LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMK 303 Query: 317 DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID----KQSWELAQIDKPDTYKRRV 372 + +R E G+ + K FN++ + E S+ID +++ E+ +++ + R Sbjct: 304 EEWEKAKRTPAERGDF---ITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEG--RPC 358 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 +G D+ D A + LD+ + K K V YSN E+ Y E Sbjct: 359 TIGYDLSETEDFTAACATFA------LDNGKVAVLSHSWIPKHK---VEYSN-EKIPYRE 408 Query: 433 ------ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWP 486 +T + ID + VL I +M + V I +D + E ++ + Sbjct: 409 WEEDGLLTVQDKPYIDYQDVLNWIIKM--NEHYVVEKITYD--RANAFKLNQELKNYGFE 464 Query: 487 LIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRI-DKNKNS 545 E Q + L+ K ++ GKI + NPL+ +NN +K D NG + K Sbjct: 465 TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRY 524 Query: 546 NKIDPLDAALDGYA 559 KID A L+ Y Sbjct: 525 RKIDGFAAFLNTYT 538 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 158 bits (400), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 161/554 (29%), Positives = 262/554 (47%), Gaps = 46/554 (8%) Query: 20 YYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEIL--PDV 77 +YA+ V +IK+SK V K C RHL R + K+V+ E A PI FIE P Sbjct: 17 WYAEQVTQGKIKTSKYVKKECERHL----RYLENGGKWVFDEELAHRPIRFIEKFCKPSK 72 Query: 78 KTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 + + L +Q FIIG+L+GW K + LRRF++A+I + RKNGKT I+G+ Y Sbjct: 73 GSKRQLVLQPWQHFIIGSLFGWVHK-ETKLRRFKEALIFMGRKNGKTTTISGVANYAV-- 129 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 + ++ AN QA+I +D +K + + +R+ + +RDE+ S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKA----SPKLRENFRPLRDEIHYDATISK 185 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 I + D+ +DG ++G+ DE K +++ ++++ + P ++ I+TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 258 PM-HTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLM 316 P+ +E T LD I DE F Y+A D++++I D SNWIK+NP L V D++ Sbjct: 246 PLVDMVEAGRDT--LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMK 303 Query: 317 DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID----KQSWELAQIDKPDTYKRRV 372 + +R E G+ + K FN++ + E S+ID +++ E+ +D+ + R Sbjct: 304 EEWEKAKRTPAERGDF---ITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEG--RPC 358 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 +G D+ D A + LD+ + K K V YSN E+ Y E Sbjct: 359 TIGYDLSETEDFTAACATFA------LDNGKVAVLTHSWIPKHK---VEYSN-EKIPYRE 408 Query: 433 ------ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWP 486 +T + ID + VL I +M + V I +D + E ++ + Sbjct: 409 WEEDGLLTIQDKPYIDYQDVLNWIIKM--NEHYVVEKITYD--RANAFKLNQELKNYGFE 464 Query: 487 LIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRI-DKNKNS 545 E Q + L+ K ++ GKI + NPL+ +NN +K D NG + K Sbjct: 465 TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRY 524 Query: 546 NKIDPLDAALDGYA 559 KID A L+ Y Sbjct: 525 RKIDGFAAFLNTYT 538 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 157 bits (398), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 160/554 (28%), Positives = 264/554 (47%), Gaps = 46/554 (8%) Query: 20 YYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEIL--PDV 77 +YA+ V +IK+SK V K C RHL R + K+V+ E A PI FIE P Sbjct: 17 WYAEQVTQGKIKTSKYVKKECERHL----RYLENGGKWVFDEELAHRPIRFIEKFCKPSK 72 Query: 78 KTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLF 137 + + L +Q FIIG+L+GW K + LRRF++A+I + RKNGKT I+G+ Y Sbjct: 73 GSKRQLVLQPWQHFIIGSLFGWVHK-ETKLRRFKEALIFMGRKNGKTTTISGVANYAV-- 129 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 + ++ AN QA+I +D +K + + +R+ + +RDE+ S Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKA----SPKLRENFRPLRDEIHYDATISK 185 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 I + D+ +DG ++G+ DE K +++ ++++ + P ++ I+TAG L+ Sbjct: 186 IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDG 245 Query: 258 PM-HTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLM 316 P+ + +E T LD I DE F Y+A D++++I D SNWIK+NP L V D++ Sbjct: 246 PLVNMVEAGRDT--LDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMK 303 Query: 317 DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID----KQSWELAQIDKPDTYKRRV 372 + +R E G+ + K FN++ + E S+ID +++ ++ +D+ + R Sbjct: 304 EEWEKAKRTPDERGDF---ITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEG--RPC 358 Query: 373 WLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCE 432 +G D+ D A + LD+ + K K V YSN E+ Y E Sbjct: 359 TIGYDLSETEDFTAACATFA------LDNGKVAVLTHSWIPKHK---VEYSN-EKIPYIE 408 Query: 433 ------ITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWP 486 +T ++ ID + VL I +M + V I +D + E ++ + Sbjct: 409 WEEDGLLTIQDNPYIDYQDVLNWIIKM--NEHYVVEKITYD--RANAFKLNQELKNYGFE 464 Query: 487 LIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRI-DKNKNS 545 E Q + L+ K ++ GKI + NPL+ +NN +K D NG + K Sbjct: 465 TEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRY 524 Query: 546 NKIDPLDAALDGYA 559 KID A L+ Y Sbjct: 525 RKIDGFAAFLNTYT 538 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 155 bits (392), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 151/578 (26%), Positives = 255/578 (44%), Gaps = 53/578 (9%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKR-IDDEDFKFVYLPEKAADPINFIEILP---- 75 YA+ ++ +I + K + AC RHL+DLK ++D+++ + + + A F+++LP Sbjct: 13 YARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSSG 72 Query: 76 DVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 D+K G+ +Q FI +++GW K RRF++ I V RKNGK+ AGI +Y F Sbjct: 73 DLK-GQKLKAEPWQLFIFSSIFGWVTKKGKK-RRFKETYIRVGRKNGKSFFAAGIGMYMF 130 Query: 136 LF-GHNPSMSRQLFCTANDRTQAKIAWDMAK---KQLSSLRAK-DVDVRKATKIVRDELK 190 G N + +++C A QAK + A K L LR++ +V V A K+ R+ Sbjct: 131 CADGENAA---EVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVW-AEKLTRE--- 183 Query: 191 NLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIIST 250 D S + + G DG P ++DE+ T+ + + +G G P LII+T Sbjct: 184 ---DGSVFAPVVGNPG--DGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITT 238 Query: 251 AGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEA 310 AG D+ P + + + + LD + +E FG + E D + +D N IK+NP L V Sbjct: 239 AGKDIESPCYDKDNE-VKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSV 297 Query: 311 LHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ---IDKPDT 367 ++ L++ L + V T N + K+ NMW S + ++ + W A+ + + Sbjct: 298 FYEDLVEKLHLAKTVPRMT---NDIKTKHLNMW-VSGKTAFFNMDHWAKAEDKNLKLSNF 353 Query: 368 YKRRVWLGVDVGRVSDLFAISSVIMMD------------DYWYL-DSFSFVATKYGLTAK 414 LG+D+ DL A V + +W D+ + K TAK Sbjct: 354 KGEESHLGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAK 413 Query: 415 EKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL 474 + V N++ G + + D +L + +M + + I DP G Sbjct: 414 RYQKWV---NMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPT--GAT 468 Query: 475 LTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNN---AYIK 531 E + I + Q ++ P K+ L G+ H GNP+L ++N ++ Sbjct: 469 ALSHELADNGFEPINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVP 528 Query: 532 TDNNGMRIDKNKNSNKIDPLDAALDGYAVCYLEPFDGS 569 ++ +R K +KID A L L D S Sbjct: 529 GSDDRVRPTKGDKQSKIDGATALLMAIGRAMLHGQDSS 566 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 142 bits (359), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 132/558 (23%), Positives = 245/558 (43%), Gaps = 54/558 (9%) Query: 18 AFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDV 77 A +A+ VV ++ + + V AC RHL+DL FK+ + P KA + I++LP Sbjct: 12 ANQFARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHT 71 Query: 78 KTGKPY-----PLAMFQKFIIGNLYGW-RKKTDHSLRRFRKAMISVARKNGKTILIAGIL 131 K Y L +Q F + +GW RKKT RRFR++ V RKNGK+++ AG+ Sbjct: 72 KGEWAYKRQLVTLEPWQLFGLACTFGWVRKKT--GFRRFRESYWEVPRKNGKSVIAAGVG 129 Query: 132 LYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAK-KQLSSLRAKDVDVRKATKIVRDELK 190 + +F + +++C A Q AW++ + +L R+ + ++ L Sbjct: 130 IA--MFTADDEFGAEVYCGATTERQ---AWEVFRPARLMVKRSPLLIEHLGIEVNAQALN 184 Query: 191 NLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIIST 250 D S + + G DG P + DE+ TN E + +G G P + +I+T Sbjct: 185 RPEDGSRFEPIIGNPG--DGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITT 242 Query: 251 AGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEA 310 AG ++ P + + + ++L+G + D+ FG++ D +++ D K+NP + + Sbjct: 243 AGANIEGPCYD-KRRQVIEMLEGTVPDDELFGWIWTIDEDDDWTDPRVLAKANPNIGISV 301 Query: 311 LHDKLMDYLRTRRRVSLETGEI-NKVLIKNFNMWRQSSEESYIDKQSWE--------LAQ 361 +YL ++++ ++++ N K+ N+W S++ Y + + W+ L Q Sbjct: 302 YQ----EYLESQQQRAIKSARFTNTFKTKHLNVW-TSAKAGYFNLEDWKACEDRSLSLEQ 356 Query: 362 IDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMD-----DYWYLDSFSFVATKYGLTAKEK 416 + D L +D+ R DL +++ + D Y+ + +V + + Sbjct: 357 FEGQDCV-----LALDMARKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENR 411 Query: 417 RDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLT 476 R Y G+ + + ID +LE+ +E V DP+ L Sbjct: 412 RMAERYQAWVNHGF--LIETDGAEIDYREILEEAKEA--NRRCPVQCTPLDPHGATNLSH 467 Query: 477 MI--EKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT-- 532 + E P + + Q ++ P K+ + + H GNP++T ++N K Sbjct: 468 QLADEGLTP----VTIVQNYTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLP 523 Query: 533 -DNNGMRIDKNKNSNKID 549 +++ +R K N NKID Sbjct: 524 GNDDVVRPVKQGNDNKID 541 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 142 bits (359), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 142/585 (24%), Positives = 256/585 (43%), Gaps = 64/585 (10%) Query: 16 DDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILP 75 + +A+ VV + + + V AC RHL+DL +DF++ + PE A + IE+LP Sbjct: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLP 68 Query: 76 DVKTGKPY-----PLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGI 130 K + L +QKF + +GW K RRFR++ V RKNGK+++ AG+ Sbjct: 69 HTKGEWAFRKQLVTLEPWQKFGLMATFGWLNKRTGK-RRFRESYWEVPRKNGKSVIAAGV 127 Query: 131 LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAK-KQLSSLRAKDVDVRKATKIVRDEL 189 + F+ + +++ A T K AW++ + +L R+ ++ V ++ + Sbjct: 128 GIGMFVL--DDEFGAEVYAGA---TTEKQAWEVFRPARLMVKRSPELIVAADIEVNASNM 182 Query: 190 KNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIIS 249 D S L + G DG P ++DE+ + + E + +G G P + II+ Sbjct: 183 NKPEDGSRFEPLIGNPG--DGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 Query: 250 TAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVE 309 TAG ++ P + + ++L+G + D+ FG++ D ++ D K+NP + + Sbjct: 241 TAGANIEGPCFD-KRRQVIEMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGIS 299 Query: 310 ALHDKLMDYLRTRRRVSLETGEI-NKVLIKNFNMWRQSSEESYIDKQSWE--------LA 360 DYL ++++ ++++ N K+ N+W S++ Y + + W+ L Sbjct: 300 VYQ----DYLESQQQRAIKSARFTNTFKTKHLNVW-TSAKAGYFNLEDWKSCEDRSLTLE 354 Query: 361 QIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMD-----DYWYLDSFSFVATKYGLTAKE 415 Q + D L +D+ R DL +++ + D Y+ + +V + + Sbjct: 355 QFEGQDCV-----LALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEETVRNTEN 409 Query: 416 KRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGIC------FDPY 469 +R Y QG C + T + ID +LE+ + + N +C DP+ Sbjct: 410 RRMAERYQAWVNQG-CLLET-DGAEIDYRDILEEAK--------DANRLCPVQCTPLDPH 459 Query: 470 QFGTLLTMIEKRHPEWPLIEVSQTTMVLNM--PTKQFRDDLKKGKIKHSGNPLLTMAVNN 527 L +E L V+ NM P K+ + G+ H GNP++T V+N Sbjct: 460 GATNLSHQLEDEG----LTPVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSN 515 Query: 528 AYIKT---DNNGMRIDKNKNSNKIDPLDAALDGYAVCYLEPFDGS 569 K +++ +R K N NKID A + LE GS Sbjct: 516 VIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAIGRAMLENHAGS 560 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 140 bits (352), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 165/324 (50%), Gaps = 19/324 (5%) Query: 248 ISTAGMDLNVPMHTIEYPYITKILDGEITDEG------YFGYVAEQDNEEEIKDESNWIK 301 ISTA + +VP + KIL + D+ Y V QDN +E+ W K Sbjct: 9 ISTAYPNPSVPFREDQ-----KILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAK 63 Query: 302 SNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ 361 SNP+L++E+ + LM L +R L +G + +KN N W + S++D + E A Sbjct: 64 SNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 Query: 362 IDKPDTYKRRVWLGVDVGRVSDLFAISSVIMM-----DDYWYLDSFSFVATKYG--LTAK 414 I + D +RV++G+D SD AI V W+++ SF+ + L AK Sbjct: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 Query: 415 EKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL 474 ++DGV+Y +LE++GYC IT+ G+I+ E V + V N+ +V +D + Sbjct: 184 MEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKI 243 Query: 475 LTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDN 534 + +E + +PL+ + Q T L PTK + +G I + ++ A+ NA IK DN Sbjct: 244 IKSLES-NTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDN 302 Query: 535 NGMRIDKNKNSNKIDPLDAALDGY 558 G+++DK K++ KID +DA +D + Sbjct: 303 IGIQVDKMKSTYKIDVVDAIIDAF 326 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 137 bits (346), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 138/563 (24%), Positives = 247/563 (43%), Gaps = 60/563 (10%) Query: 16 DDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILP 75 + +A+ VV + + + V AC RHL+DL +DF++ + PE A + IE+LP Sbjct: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLP 68 Query: 76 DVK-----TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGI 130 K G+ L +QKF + +GW K RRFR++ V RKNGK++ AG+ Sbjct: 69 HTKGEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGK-RRFRESYWEVPRKNGKSVTAAGV 127 Query: 131 LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAK-KQLSSLRAKDVDVRKATKIVRDEL 189 + F+ + +++ A T K AW++ + QL R+ + ++ + Sbjct: 128 GIGMFVL--DDEFGAEVYAGA---TTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNM 182 Query: 190 KNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIIS 249 D S + + G DG P ++DE+ + + E + +G G P + II+ Sbjct: 183 NKPADGSRFEPIIGNPG--DGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIIT 240 Query: 250 TAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVE 309 TAG ++ P I ++L+G + D+ FG++ D ++ D K+NP + + Sbjct: 241 TAGANIEGPCFDKRRQVI-EMLEGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGIS 299 Query: 310 ALHDKLMDYLRTRRRVSLETGEI-NKVLIKNFNMWRQSSEESYIDKQSWE--------LA 360 DYL ++++ ++++ N K+ N+W S++ Y + + W+ L Sbjct: 300 VYQ----DYLESQQQRAIKSARFTNTFKTKHLNVW-TSAKAGYFNLEDWKSCEDRSLTLE 354 Query: 361 QIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMD-----DYWYLDSFSFVATKYGLTAKE 415 Q + D L +D+ R DL +++ + D Y+ + +V + Sbjct: 355 QFEGQDCV-----LALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTEN 409 Query: 416 KRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL- 474 +R Y QG C + T + ID +LE+ + + N +C P Q L Sbjct: 410 RRMAERYQAWVNQG-CLLET-DGAEIDYRDILEEAK--------DANRLC--PVQCTPLD 457 Query: 475 ---LTMIEKRHPEWPLIEVSQTTMVLNM--PTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 T + + + L V+ NM P K+ + G+ H GNP++T V+N Sbjct: 458 PHGATNLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVI 517 Query: 530 IKT---DNNGMRIDKNKNSNKID 549 K +++ +R K N NKID Sbjct: 518 GKNLPGNDDVVRPIKQGNDNKID 540 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 125 bits (315), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 128/548 (23%), Positives = 239/548 (43%), Gaps = 37/548 (6%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK-- 78 YA+ VV +I + + V +AC RHL+DL + F++ + + A FI++LP K Sbjct: 15 YARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHTKGE 74 Query: 79 ---TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 P L +Q F+I +GW K LRRFR+ + RKNGK+ + AG+ LY Sbjct: 75 WAFKRMPITLEPWQLFVICCAFGWVNKGSR-LRRFREVYTEIPRKNGKSAISAGVALY-- 131 Query: 136 LFGHNPSMSRQLFCTANDRTQAKIAWDMAK-KQLSSLRAKDVDVRKATKIVRDELKNLHD 194 F + +++ A T K AW++ + +L R + ++ + D Sbjct: 132 CFACDNEFGAEVYSGA---TTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNASNMNRPED 188 Query: 195 ESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMD 254 + L + G DG P+ V+DE+ T+ + + +G G P + I+TAG + Sbjct: 189 GARFEPLIGNPG--DGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYN 246 Query: 255 LNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDK 314 + P + I ++L+G + ++ FG + D ++ D K+NP + V + Sbjct: 247 IEGPCYDKRREVI-EMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREF 305 Query: 315 LMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYK----R 370 L L ++R N K+ N+W S+ +Y + SW+ + DK T + + Sbjct: 306 L---LSQQQRAKNNARLANVFKTKHLNIW-VSARSAYFNLVSWQSCE-DKSLTLEQFEGQ 360 Query: 371 RVWLGVDVGRVSDLFAISSVIMMD-----DYWYLDSFSFVATKYGLTAKEKRDGVSYSNL 425 L D+ R D+ +++ + + Y+ + +V + ++ D + Sbjct: 361 PCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERF 420 Query: 426 ERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWE-VNGICFDPYQFGTLLTMIEKRHPE 484 ++ + T+ G D R + +EE N+ V+ DP FG + + Sbjct: 421 QKWVEMGVLTVTDGAEVDYRYI--LEEAKAANKISPVSESPIDP--FGATGLSHDLADED 476 Query: 485 WPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT---DNNGMRIDK 541 + + Q ++ P K+ ++ G+ H GNP++T + N K +++ ++ K Sbjct: 477 LNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLVKPVK 536 Query: 542 NKNSNKID 549 + NKID Sbjct: 537 EQAENKID 544 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 125 bits (313), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 136/497 (27%), Positives = 222/497 (44%), Gaps = 40/497 (8%) Query: 68 INFIE---ILPDVK-TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGK 123 I FIE I+P+ K G+P L FQK I +Y TD A++S+ARKNGK Sbjct: 8 IAFIERFCIVPEGKLIGQPMRLDTFQKEFILAVYDNPAGTDM-------AILSIARKNGK 60 Query: 124 TILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATK 183 T LIAGILL L G + Q+ A R QA I +++A K + +L K ++ T Sbjct: 61 TGLIAGILLAH-LVGPEAVQNTQIVSGALSREQAAIVFNLAVKMV-NLNPKLQEIVHITP 118 Query: 184 IVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASK--TNEMLELLESGQGQLD 241 + +L L +ALS + G P + +LDE + ++ ++ + + QG + Sbjct: 119 SGK-KLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHE 177 Query: 242 NPFILIIST-AGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWI 300 NP +++IST A D ++ I+ +K D +V E + +I +W+ Sbjct: 178 NPLLIVISTQAANDADLLSIWIDDAVKSK-------DPHIVCHVYEAPKDADISKRESWL 230 Query: 301 KSNPILEV-EALHDKLMDYLRTRRRVSLETGEINKVLIKNFNM-WRQSSEESYIDKQSWE 358 +NP L + D + R S E +N N+ R S+ +I + WE Sbjct: 231 AANPALGTFRSEKDMARQAEKAGRMPSFEN------TFRNLNLNQRVSTVSPFISRSVWE 284 Query: 359 LAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVAT-KYGLTAKEKR 417 L + P R+ + G+D+ +DL A+ DD + D F F T + L + K Sbjct: 285 LCG-EMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVW-DVFPFFWTPQKTLEERTKT 342 Query: 418 DGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTM 477 D Y R+G T S +D V+ I E++ ++++ I FD ++ Sbjct: 343 DRAPYDVWVREGLLRTTPGAS--VDYSFVVADIAEII--GDFDLTSIAFDRWRIDQFRKD 398 Query: 478 IEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGM 537 + PL+E Q + + G+++H +P+LTM NA + D G Sbjct: 399 ADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGN 458 Query: 538 R-IDKNKNSNKIDPLDA 553 R +DK+K + +ID + A Sbjct: 459 RKLDKSKATGRIDGMVA 475 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 124 bits (310), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 135/497 (27%), Positives = 222/497 (44%), Gaps = 40/497 (8%) Query: 68 INFIE---ILPDVK-TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGK 123 I FIE I+P+ K G+P L FQK I +Y TD A++S+ARKNGK Sbjct: 8 IAFIERFCIVPEGKLIGQPMRLDPFQKDFILAVYDNPAGTDM-------AILSIARKNGK 60 Query: 124 TILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATK 183 T LIAGILL L G + Q+ A R QA I +++A K + +L K ++ T Sbjct: 61 TGLIAGILLAH-LVGPEAVQNTQIVSGALSREQAAIVFNLAVKMV-NLNPKLQEIVHITP 118 Query: 184 IVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASK--TNEMLELLESGQGQLD 241 + +L L +ALS + G P + +LDE + ++ ++ + + QG + Sbjct: 119 SGK-KLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHE 177 Query: 242 NPFILIIST-AGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWI 300 NP +++IST A D ++ I+ +K D +V E + +I +W+ Sbjct: 178 NPLLIVISTQAANDADLLSIWIDDAVKSK-------DPHIVCHVYEAPKDADISKRESWL 230 Query: 301 KSNPILEV-EALHDKLMDYLRTRRRVSLETGEINKVLIKNFNM-WRQSSEESYIDKQSWE 358 +NP L + D + R S E +N N+ R S+ +I + WE Sbjct: 231 AANPALGTFRSEKDMARQAEKAGRMPSFEN------TFRNLNLNQRVSTVSPFISRSVWE 284 Query: 359 LAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVAT-KYGLTAKEKR 417 L + P R+ + G+D+ +DL A+ DD + D F F T + L + K Sbjct: 285 LCG-EMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVW-DVFPFFWTPQKTLEERTKT 342 Query: 418 DGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTM 477 D Y R+G T S +D V+ I E++ ++++ + FD ++ Sbjct: 343 DRAPYDVWVREGLLRTTPGAS--VDYSFVVADIAEII--GDFDLTSMAFDRWRIDQFRKD 398 Query: 478 IEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGM 537 + PL+E Q + + G+++H +P+LTM NA + D G Sbjct: 399 ADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVVVKDAAGN 458 Query: 538 R-IDKNKNSNKIDPLDA 553 R +DK+K + +ID + A Sbjct: 459 RKLDKSKATGRIDGMVA 475 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 123 bits (309), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 130/555 (23%), Positives = 245/555 (44%), Gaps = 51/555 (9%) Query: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVKTG 80 YA+ VV +I + + V +AC RH++D+ + F++ + + A FI++LP K Sbjct: 15 YARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLLPHTKGE 74 Query: 81 KPY-----PLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 + L +Q FI+ +GW +K LRRFR+ + RKNGK+ + AG+ LY Sbjct: 75 WAFKRMLITLEPWQLFIVCCAFGWVQKGT-KLRRFREVYTEIPRKNGKSAISAGVALY-- 131 Query: 136 LFGHNPSMSRQLFCTANDRTQA----KIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKN 191 F + +++ A QA + A M K+ + A ++V A+ + R E Sbjct: 132 CFTCDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPLLVEAFGIEV-NASNLNRPE--- 187 Query: 192 LHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTA 251 D + L + G DG P+ ++DE+ T+ + + +G G P + I+TA Sbjct: 188 --DGARFEPLIGNPG--DGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMWAITTA 243 Query: 252 GMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEAL 311 G ++ P + I ++L+G + + FG + D ++ D K+NP + V Sbjct: 244 GYNIEGPCYDKRREVI-EMLNGSVPNNELFGVIYTVDEGDDWTDPKVLEKANPNIGVSVY 302 Query: 312 HDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYK-- 369 D L L ++R K+ N+W ++ ++ + SW+ + DK T + Sbjct: 303 RDFL---LSQQQRAINNARHAGVFKTKHLNVW-VAARTAFFNLVSWQNCE-DKTLTLELF 357 Query: 370 --RRVWLGVDVGRVSDLFAISSVIMMD----DYWYLDSFSFVA---TKYGLTAKE-KRDG 419 + L D+ R D+ +++ + + ++Y + F T Y + E +R Sbjct: 358 EGQPCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSVEKNEDRRTA 417 Query: 420 VSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMI- 478 + G+ +T + +D +LE+ + N V+ DP+ L + Sbjct: 418 ERFQKWVEMGF--LTVTDGAEVDYRYILEEAKAANKLN--PVSESPIDPFGATGLSHDLA 473 Query: 479 -EKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT---DN 534 E +P + + Q ++ P K+ ++ G+ H GNP++T + N KT ++ Sbjct: 474 DENLNP----VTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGND 529 Query: 535 NGMRIDKNKNSNKID 549 + ++ K + NKID Sbjct: 530 DVVKPIKEQAENKID 544 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 122 bits (306), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 127/513 (24%), Positives = 234/513 (45%), Gaps = 51/513 (9%) Query: 69 NFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDH--SLRRFRKAMISVARKNGKTIL 126 +FI + G+ L +++ F+ N+YGW K + ++R R++ + V +KNGKTI+ Sbjct: 60 SFIRHVKGPLAGQLMELELWEMFVFANMYGWYHKNEKGKTVRVIRESYVQVPKKNGKTII 119 Query: 127 IAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQL--SSLRAKDVDVRKATK- 183 AG LLY ++G + +C A+D QA+ A + + + S A+ + K Sbjct: 120 AAGALLYA-MYGE-LELGADCYCAASDYEQAQNAAEPIAQAIENSEPLARHTQIYKGVNG 177 Query: 184 -----IVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQG 238 + R + + ++ + L+++T ++G PY + DE A + +M + L+S Q Sbjct: 178 TVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHAQENMDMYDNLKSAQI 237 Query: 239 QLDNPFILIISTAGMDL-NVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDES 297 + P +L ISTAG +V M Y Y +L+ + D+ F + E + + +D Sbjct: 238 SREQPMMLNISTAGKGASSVGMRV--YKYAKLVLEND-DDDSLFVAIWEPNKNYDWEDRK 294 Query: 298 NWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSW 357 W NP + V ++L + ++ + E L K+ N++ ++ + Q Sbjct: 295 VWKMVNPNIGVSVTMEQLEIEFKKAKQSAHSKAEF---LSKHLNVFVNGADNYFEHDQVQ 351 Query: 358 ELAQIDKPDTYKRRVWLGVDVGRVSDLFAIS-----------SVIMMDDYWYLDSFSFVA 406 + D D +LG+D+ + +DL +S S+I + ++L + + Sbjct: 352 HVLVKDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNEN--- 408 Query: 407 TKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICF 466 + KEK D V Y+++ +G+ T + +ID ++++E I E + + ++V I + Sbjct: 409 ----IDFKEKEDNVPYTDMVERGFA--TFCDGKMIDQDQIMEYIVECM--DLYDVQQINY 460 Query: 467 DPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDD---LKKGKIKHSGNPLLTM 523 DP L+ +E E I V+Q V+N DD L K + NPL Sbjct: 461 DPAMSQKLIEKLENLGLE--CIAVNQYPNVMN----AMLDDSEILIYEKRLITDNPLFVY 514 Query: 524 AVNNAYIKTDNNGMRI-DKNKNSNKIDPLDAAL 555 N + T+ NGM+ K ++ KID A L Sbjct: 515 CALNVVVVTNINGMKAPSKRQSKKKIDGFVAFL 547 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 109 bits (273), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 116/479 (24%), Positives = 201/479 (41%), Gaps = 63/479 (13%) Query: 79 TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRR-FRKAMISVARKNGKTILIAGILLYEFLF 137 G+P+ L +Q+ ++ + Y + T RR R ++ VARKNGK+ + A I+LY L Sbjct: 46 AGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYH-LI 104 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 RQ+ ANDR QA++ +D AK+ +++ + + RD ++ D +Y Sbjct: 105 ADRGDAQRQVIAAANDRNQARMVFDSAKQMVNA----SPKLAAVCNVQRDVIR-YKDNTY 159 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 R +S D G G P LDE+A SK++++ + L G + P LIISTAG D + Sbjct: 160 -RVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLIISTAGPDPDG 218 Query: 258 PMHTIEYPYITKILDGEITDEGYF--GYVAEQDNEEEIKDESNWIKSNPILEVEALHDKL 315 P + ++ GE D F + + + D W + NP ++ D Sbjct: 219 PFAAL-CEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNPSYDILNPDD-- 275 Query: 316 MDYLRTRRRVSLETGEINKVLIKNFNMWRQS----SEESYIDKQSWELAQIDKPDTYKRR 371 + + S E +F ++R S +++ W+ D D + Sbjct: 276 ---FKAAAQRSTEA---------SFRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEP- 322 Query: 372 VWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYC 431 G +V V D W DS + VA + RD + G+ Sbjct: 323 ---GDEV-----------VCGFDGSWKGDSTALVACRV-------RDLRVFV----LGHW 357 Query: 432 EITTLESGVIDDERVLEKIEEMVYT--NEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIE 489 E + I + + E +++ + + V + DPY++ L +E +P+ Sbjct: 358 EAPADD---IHWRVPMADVREALHSALDTYRVRNLVADPYRWEETLDNLEAEG--FPVEA 412 Query: 490 VSQTTMVLNMP-TKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNK 547 ++ +P T+ D + G++ H GNP L + NA +K D G RI K +++ Sbjct: 413 FPTNSLARMVPATQAVYDACRDGRLSHDGNPALARHIGNAVLKEDARGARITKEFGASR 471 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 108 bits (269), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 123/490 (25%), Positives = 200/490 (40%), Gaps = 86/490 (17%) Query: 79 TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRR-FRKAMISVARKNGKTILIAGILLYEFLF 137 G+P+ L +Q+ ++ + Y + T RR R ++ VARKNGK+ + A I+LY L Sbjct: 43 AGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYH-LI 101 Query: 138 GHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESY 197 RQ+ ANDR QA++ +D AK+ +++ + + RD ++ D +Y Sbjct: 102 ADRGDAQRQIIAAANDRNQARMVFDSAKQMVNA----SPKLAAVCDVQRDVIR-YKDNTY 156 Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 R +S D G G P LDE+A SK +++ + L G + P LIISTAG D + Sbjct: 157 -RVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAGPDPDG 215 Query: 258 PMHTIEYPYITKILDGEITDEGYF--GYVAEQDNEEEIKDESNWIKSNPILEVEALHDKL 315 P + ++ GE D F + + + D W NP ++ D Sbjct: 216 PFAAL-CEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACNPSYDILNPDD-- 272 Query: 316 MDYLRTRRRVSLETGEINKVLIKNFNMWRQS----SEESYIDKQSWE-LAQIDKPDTYKR 370 + + S E +F ++R S +++ W+ LA D P Sbjct: 273 ---FKAAAQRSTEA---------SFRIYRLSQFVRGASTWLPHGLWDSLAADDDPLEPGD 320 Query: 371 RVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGY 430 V LG D W DS + VA Sbjct: 321 EVVLG-----------------FDGSWKGDSTALVA------------------------ 339 Query: 431 CEITTLESGVI-------DDE--RV-LEKIEEMVYT--NEWEVNGICFDPYQFGTLLTMI 478 C I L+ V+ DD RV + + E ++T + + V + DPY++ L + Sbjct: 340 CRIRDLKVFVLGHWEAPADDAHWRVPMADVREELHTALDVYRVRNLVADPYRWEETLDNL 399 Query: 479 EKRHPEWPLIEVSQTTMVLNMP-TKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGM 537 E +P+ ++ +P T+ D + G++ H GNP L + NA +K D G Sbjct: 400 EAD--GFPVEAFPTNSLARMVPATQAVYDACRDGRLSHDGNPALGRHIGNAVLKEDARGA 457 Query: 538 RIDKNKNSNK 547 RI K S++ Sbjct: 458 RITKEHASSR 467 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 119/455 (26%), Positives = 208/455 (45%), Gaps = 39/455 (8%) Query: 117 VARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDV 176 + RKNGKT I+G+ Y + ++ AN QA+I +D +K + + Sbjct: 1 MGRKNGKTTTISGVANYAV--SQDGENGAEIHLLANVMKQARILFDESKAMIKA----SP 54 Query: 177 DVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESG 236 +R+ + +RDE+ S I + D+ +DG ++G+ DE K +++ ++++ Sbjct: 55 KLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 114 Query: 237 QGQLDNPFILIISTAGMDLNVPM-HTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKD 295 + P ++ I+TAG L+ P+ + +E T LD I DE F Y+A D++++I D Sbjct: 115 RAARLQPLLIYITTAGYQLDGPLVNMVEAGRDT--LDRIIEDERTFYYLASLDDDDDIND 172 Query: 296 ESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID-- 353 SNWIK+NP L V ++ + +R E G+ + K FN++ + E S+ID Sbjct: 173 SSNWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDF---ITKRFNIFANNDEMSFIDYP 229 Query: 354 --KQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGL 411 +++ ++ +D+ + R +G D+ D A + + LD+ + Sbjct: 230 TLQKNNDIISLDELEG--RPCTIGYDLSETEDFTAACAT------FALDNGKVAVLTHSW 281 Query: 412 TAKEKRDGVSYSNLERQGYCE------ITTLESGVIDDERVLEKIEEMVYTNEWEVNGIC 465 K K V YSN E+ Y E +T ++ ID + VL I +M + V I Sbjct: 282 IPKHK---VEYSN-EKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKM--NEHYVVEKIT 335 Query: 466 FDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAV 525 +D + E ++ + E Q + L+ K ++ GKI + NPL+ + Sbjct: 336 YD--RANAFKLNQELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYI 393 Query: 526 NNAYIKTDNNGMRI-DKNKNSNKIDPLDAALDGYA 559 NN +K D NG + K KID A L+ Y Sbjct: 394 NNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 428 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 143/581 (24%), Positives = 253/581 (43%), Gaps = 79/581 (13%) Query: 16 DDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIE--I 73 D YAK +VD + + +++ +A R DL E+ K+ + P +A I IE Sbjct: 8 DAVMEYAKSIVDGRKVACRELIQAAKRFFKDL-----ENPKYDFNPREAEFVIQIIEKTF 62 Query: 74 LPDVK--------TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 + D G+P+ L +QKFII NL G+ K +RRF++A I + RKNGKT Sbjct: 63 VHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGT-KIRRFKEAFIFIPRKNGKTR 121 Query: 126 LIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIV 185 LIA + L +++ T+ Q+ +++ L +LR + + +I+ Sbjct: 122 LIAALAWALALLERQSG--SKIYITSAALQQSLQSFEFI---LFNLR--QMGEEQNFRIL 174 Query: 186 RDELKN-----LHDES-YIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQ 239 + +N D S YIRAL+ + D VG+ DE A KT + +++ Sbjct: 175 NNNQENSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKA 234 Query: 240 LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIK-DESN 298 N ++ I+TAG D+ + Y KILD +TDE YF ++ + D +E + D +N Sbjct: 235 YTNKLMIGITTAGDDMTSFCYQ-RLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTN 293 Query: 299 WI---KSNPILEVEALHDKLM-DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID- 353 I K+NP V D +M D L+ + + + L K+ N++ S ++Y + Sbjct: 294 PIEHEKANPNYGVTIRPDDIMNDALQAQN----DPQQRKDFLAKSLNIY-TSPMKAYFNI 348 Query: 354 --------KQSWELAQIDKPDTYKRRVWL-GVDVGRVSDLFAISSV-------IMMDDYW 397 K W + Q+ K W G D+ ++ DL A + I + W Sbjct: 349 DEFKKSDRKYDWTIEQLAKLGI----DWFGGADLSKLHDLTAAALYGNYNGVDIAITHAW 404 Query: 398 YLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTN 457 F VA T K + D + G+ +T + D + K E + Sbjct: 405 ----FPIVAA----TRKAEEDNIPLFGWRDDGWLTMTNTPTVNFSD---VVKWFETMRAK 453 Query: 458 EWEVNGICFDPYQFGT--LLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKH 515 +++ + FD +FG + M +KR + +++ Q + ++ +K GK + Sbjct: 454 GFKIKQVGFDR-KFGREFFMAMKQKR---FNIVDQPQYYYKKSEGFRRIEKQVKDGKFYY 509 Query: 516 SGNPLLTMAVNNAY-IKTDNNGMRIDKNKNSNKIDPLDAAL 555 + V N + I+ ++ ++ +K ++ ++ID DA + Sbjct: 510 LHSQAFEYCVQNVHAIEKTDDMIQFEKIEDKHRIDIFDATV 550 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 143/581 (24%), Positives = 253/581 (43%), Gaps = 79/581 (13%) Query: 16 DDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIE--I 73 D YAK +VD + + +++ +A R DL E+ K+ + P +A I IE Sbjct: 8 DAVMEYAKSIVDGRKVACRELIQAAKRFFKDL-----ENPKYDFNPREAEFVIQIIEKTF 62 Query: 74 LPDVK--------TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 + D G+P+ L +QKFII NL G+ K +RRF++A I + RKNGKT Sbjct: 63 VHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGT-KIRRFKEAFIFIPRKNGKTR 121 Query: 126 LIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIV 185 LIA + L +++ T+ Q+ +++ L +LR + + +I+ Sbjct: 122 LIAALAWALALLERQSG--SKIYITSAALQQSLQSFEFI---LFNLR--QMGEEQNFRIL 174 Query: 186 RDELKN-----LHDES-YIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQ 239 + +N D S YIRAL+ + D VG+ DE A KT + +++ Sbjct: 175 NNNQENSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKA 234 Query: 240 LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIK-DESN 298 N ++ I+TAG D+ + Y KILD +TDE YF ++ + D +E + D +N Sbjct: 235 YTNKLMIGITTAGDDMTSFCYQ-RLQYCKKILDETVTDEAYFVFICKADEDENGEVDYTN 293 Query: 299 WI---KSNPILEVEALHDKLM-DYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID- 353 I K+NP V D +M D L+ + + + L K+ N++ S ++Y + Sbjct: 294 PIEHEKANPNYGVTIRPDDIMNDALQAQN----DPQQRKDFLAKSLNIY-TSPMKAYFNI 348 Query: 354 --------KQSWELAQIDKPDTYKRRVWL-GVDVGRVSDLFAISSV-------IMMDDYW 397 K W + Q+ K W G D+ ++ DL A + I + W Sbjct: 349 DEFKKSDRKYDWTIEQLAKLGI----DWFGGADLSKLHDLTAAALYGNYNGVDIAITHAW 404 Query: 398 YLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTN 457 F VA T K + D + G+ +T + D + K E + Sbjct: 405 ----FPIVAA----TRKAEEDNIPLFGWRDDGWLTMTNTPTVNFSD---VVKWFETMRAK 453 Query: 458 EWEVNGICFDPYQFGT--LLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKH 515 +++ + FD +FG + M +KR + +++ Q + ++ +K GK + Sbjct: 454 GFKIKQVGFDR-KFGREFFMAMKQKR---FNIVDQPQYYYKKSEGFRRIEKQVKDGKFYY 509 Query: 516 SGNPLLTMAVNNAY-IKTDNNGMRIDKNKNSNKIDPLDAAL 555 + V N + I+ ++ ++ +K ++ ++ID DA + Sbjct: 510 LHSQAFEYCVQNVHAIEKTDDMIQFEKIEDKHRIDIFDATV 550 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 79.0 bits (193), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 99/446 (22%), Positives = 188/446 (42%), Gaps = 41/446 (9%) Query: 54 DFKFVYLPEK-AADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRK 112 D K ++ EK + INFIE + L FQKFII ++ +T+ ++ ++K Sbjct: 39 DKKEIFFDEKNIKNCINFIEKWF-------FKLENFQKFIISFVFLRYSETNRNV--YKK 89 Query: 113 AMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLR 172 +I + R GK LI+GI+ Y L + + + AN QAK ++D + S Sbjct: 90 ILIMMGRGGGKNGLISGIIAY-LLSPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVES-- 146 Query: 173 AKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLEL 232 + +++ + E+K++H S +R + + DG + V DE ++N+ + + Sbjct: 147 --NPKLKEIYYNTKSEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRV 204 Query: 233 LESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEE 292 +SG G++ N I T G + +++ K+L G F ++ + D E E Sbjct: 205 HKSGLGKVKNAREFYIGTDGYVREGFIDSMK-DKAKKVLSGNARWNSMFPFICKIDEEHE 263 Query: 293 IKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGE--------INKVLIKNFNMWR 344 + D+ W K+NP+ H+ + DY + + E E + + K + Sbjct: 264 VDDKEKWQKANPM-----FHEPMSDYAQELFDMVCEQYEEMVEDPSNREEFMTKRMDFPV 318 Query: 345 QSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIM--MDDYWYLDSF 402 E S + + + PD G+D + D A+ + D W SF Sbjct: 319 MDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFKNGADYVWLSHSF 378 Query: 403 ---SFVATKYGLTAKE-----KRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMV 454 FV T YG + ++ KR E++G +T ++ I+ + +++ +M Sbjct: 379 VRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGL--LTVIDEASINPQYIVDWFVKMR 436 Query: 455 YTNEWEVNGICFDPYQFGTLLTMIEK 480 +++ I D ++ L + E+ Sbjct: 437 DEEGYDLQRIVSDNFRMEILKPLFER 462 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/416 (22%), Positives = 176/416 (42%), Gaps = 33/416 (7%) Query: 83 YPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPS 142 + L FQKFII ++ +T+ ++ ++K +I + R GK LI+GI+ Y H Sbjct: 62 FKLENFQKFIISFVFLRYSETNRNV--YKKILIMMGRGGGKNGLISGIIAYLISPFHGIK 119 Query: 143 MSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALS 202 + + AN QAK ++D + S + +++ + E+K++H S +R + Sbjct: 120 -NYNVSLVANSEDQAKTSFDEIYNTVES----NPKLKEIYYNTKSEIKSIHTNSVMRFRT 174 Query: 203 RDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTI 262 + DG + V DE ++N+ + + +SG G++ N I T G + ++ Sbjct: 175 SNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSM 234 Query: 263 EYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTR 322 + K+L G F ++ + D E E+ D+ W K+NP+ H + DY + Sbjct: 235 K-DKAKKVLSGAARWNSMFPFICKIDEEHEVDDKEKWQKANPM-----FHQPMSDYAQEL 288 Query: 323 RRVSLETGE--------INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWL 374 + E E + + K + E S + + + PD Sbjct: 289 FDMVCEQYEEMIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIG 348 Query: 375 GVDVGRVSDLFAISSVIM-MDDY-WYLDSF---SFVATKYGLTAKE-----KRDGVSYSN 424 G+D + D A+ + DDY W SF FV T YG + ++ KR Sbjct: 349 GLDYAAIRDFAAVGLLFKDRDDYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKK 408 Query: 425 LERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK 480 E++G +T ++ I+ + +++ +M +++ I D ++ L + E+ Sbjct: 409 WEQEGL--LTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFER 462 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 23/269 (8%) Query: 58 VYLPE-KAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMIS 116 VY E K D I FIE +P FQ+FII N++ K TD + F + I Sbjct: 42 VYFDEQKIEDCIKFIEKWY-------FPTLPFQRFIIANIFLIDKNTDEAF--FTEFAIF 92 Query: 117 VARKNGKTILIAGI--LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQL-SSLRA 173 + R GK LI+ I L L G + AN QAK ++D + L + R Sbjct: 93 MGRGGGKNGLISAISDFLSTPLHG---VKEYHISIVANSEDQAKTSFDEIRTVLMDNKRN 149 Query: 174 KDVDVRKAT-KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLEL 232 K KA ++ + ++ N +S IR + +T DG + DE EM+ + Sbjct: 150 KTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 Query: 233 LESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEE 292 G G+ N IST G + +++ I +L G++ + F + + D+ +E Sbjct: 210 KRGGLGKKKNRRTFYISTDGFVREGYIDAMKHK-IASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 293 IKDESNWIKSNPILEVEALHDKLMDYLRT 321 + D W K+NP+ LH L +Y +T Sbjct: 269 VDDRQTWEKANPM-----LHKPLSEYAKT 292 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 23/269 (8%) Query: 58 VYLPE-KAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMIS 116 VY E K D I FIE +P FQ+FII N++ K TD + F + I Sbjct: 42 VYFDEQKIEDCIKFIEKWY-------FPTLPFQRFIIANIFLIDKNTDEAF--FTEFAIF 92 Query: 117 VARKNGKTILIAGI--LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQL-SSLRA 173 + R GK LI+ I L L G + AN QAK ++D + L + R Sbjct: 93 MGRGGGKNGLISAISDFLSTPLHG---VKEYHISIVANSEDQAKTSFDEIRTVLMDNKRN 149 Query: 174 KDVDVRKAT-KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLEL 232 K KA ++ + ++ N +S IR + +T DG + DE EM+ + Sbjct: 150 KTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 Query: 233 LESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEE 292 G G+ N IST G + +++ I +L G++ + F + + D+ +E Sbjct: 210 KRGGLGKKKNRRTFYISTDGFVREGYIDAMKHK-IASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 293 IKDESNWIKSNPILEVEALHDKLMDYLRT 321 + D W K+NP+ LH L +Y +T Sbjct: 269 VDDRQTWEKANPM-----LHKPLSEYAKT 292 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 70.9 bits (172), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 117/269 (43%), Gaps = 23/269 (8%) Query: 58 VYLPE-KAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMIS 116 VY E K D I FIE +P FQ+FII N++ K TD + F + I Sbjct: 42 VYFDEQKIEDCIKFIEKWY-------FPTLPFQRFIIANIFLIDKNTDEAF--FTEFAIF 92 Query: 117 VARKNGKTILIAGI--LLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQL-SSLRA 173 + R GK LI+ I L L G + AN QAK ++D + L + R Sbjct: 93 MGRGGGKNGLISAISDFLSTPLHG---VKEYHISIVANSEDQAKTSFDEIRTVLMDNKRN 149 Query: 174 KDVDVRKAT-KIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLEL 232 K KA ++ + ++ N +S IR + +T DG + DE EM+ + Sbjct: 150 KTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNV 209 Query: 233 LESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEE 292 G G+ N IST G + +++ I +L G++ + F + + D+ +E Sbjct: 210 KRGGLGKKKNRRTFYISTDGFVREGYIDAMKHK-IASVLSGKVKNSRLFAFYCKLDDPKE 268 Query: 293 IKDESNWIKSNPILEVEALHDKLMDYLRT 321 + D W K+NP+ LH L +Y +T Sbjct: 269 VDDRQTWEKANPM-----LHKPLSEYAKT 292 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 70.1 bits (170), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 115/483 (23%), Positives = 207/483 (42%), Gaps = 63/483 (13%) Query: 108 RRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKK- 166 RR+ A I +ARKNGKT L+AGI+LY L + S +++ A D+ QA +A+D+A + Sbjct: 77 RRYEIAWIELARKNGKTELLAGIMLY--LLVADGEQSGEIYGVARDKKQAALAFDVAAQM 134 Query: 167 -QLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASK 225 + S + +K + V K + D N S+ ++ D + G P DE A + Sbjct: 135 VKFSPILSKRLKVVDYKKRIYDAKTN----SFYDVIAADAKSALGSNPSGCGADEILAWQ 190 Query: 226 TNEMLELLESGQGQLD--NPFILIISTAGMDLNVPMHTIEYPYITKIL-DGEITD-EGYF 281 M + L +G G P ++ +TAG D +++ + +++ D + D + F Sbjct: 191 DGGMWDSLRTGMGSGARVQPLMVASTTAGNDTE-GFAGLKHREMERVMEDPDNPDFKHIF 249 Query: 282 GYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVS-LETGEINKVLIKNF 340 Y+ EE+ +E W +NP L + + + R++ + I ++ + F Sbjct: 250 VYMRNTPMEEDPWNEECWPHANPAL------GRFLSWEAMRKQAAEARNNPIAEMAFRQF 303 Query: 341 --NMWRQSSEESYIDKQSWELAQ-------IDKPDTYK-RRVWLGVDVGRVSDLFAIS-- 388 N W Q+S ++ +W+ + D D + + W G+D+ DL +I Sbjct: 304 KLNQW-QNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYL 362 Query: 389 ------SVIMMDDYWYLDSFSFVATKYGLTAKEKR--DGVSYSNLERQGYCEITTLESGV 440 SV ++ +W +S AK R DG G+ ++T E V Sbjct: 363 FPQSDGSVDLLWRHWIPES---------ALAKLDRLNDGRFAKEFVPGGWLKVT--EGDV 411 Query: 441 IDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQT--TMVLN 498 +D + V + IE + + + G D + ++ IEKR + I + + + Sbjct: 412 LDFDVVYDDIE--ADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSD 469 Query: 499 MPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT---DNNGMRIDK---NKNSNKIDPLD 552 + F L K ++H GNPL + + D N +R DK + + +ID + Sbjct: 470 SMHRIFEWTLAK-NLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVP 528 Query: 553 AAL 555 A+ Sbjct: 529 TAV 531 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 98/480 (20%), Positives = 189/480 (39%), Gaps = 30/480 (6%) Query: 83 YPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPS 142 +PL ++KFI ++ + K+ D + + I++ R GK I+ + Y F+ + Sbjct: 61 FPLDNWEKFIAPFIFLYFKEDDELF--YEEFFITLGRGGGKNGFISTLSNY-FISPLHGI 117 Query: 143 MSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALS 202 + + AN QAK+++ K++ + + + + + ++ S + + Sbjct: 118 NNYDVSVVANSEDQAKVSF----KEVFNTIDGNPKLEGSFDAWKAQIIGKATNSVFKFQT 173 Query: 203 RDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTI 262 + DG + DE + +++++ G G++ NP I T G + + Sbjct: 174 SNAKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNGF-VRAGFYDK 232 Query: 263 EYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILE--VEALHDKLMDYLR 320 IL GE ++ F ++ + D+ E+K+E+ W K+NP E + +L++ +R Sbjct: 233 LEERSKAILSGENLNDRMFPFICKLDDPAEVKNEAMWEKANPAFEKPLSPRSKRLLNKVR 292 Query: 321 TRRRVSLETGEINKVLIKNFNMWRQSSEESYIDK--QSWE---LAQIDKPDTYKRRVWLG 375 + E N + F R + E ++K WE + P+ R Sbjct: 293 KQ----YEALTNNPSGREAFMTKRMNLPEVDLEKVVAPWEDILATNREMPELQNRACIGA 348 Query: 376 VDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITT 435 D V D A+ + + D + + SF Y A K E+QG +T Sbjct: 349 FDYASVKDFAAVGLLFRVGDDYIWKTHSFARKGYLDIANLK---PPIKEWEKQGL--LTI 403 Query: 436 LESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTM 495 ++ ID V+ EM T+ + + D ++ + + E E +I + Sbjct: 404 VDEPTIDPRHVVNWFVEMRETH--GIQKVIGDNFRMDLMRPLFEAEGFELEIIRNPRAAH 461 Query: 496 VLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAY--IKTDNNGMRIDKNKNSNKIDPLDA 553 L P + +I NPL+ NN IK D N + K+++ K D A Sbjct: 462 SLLAP--RIETLFANHRIVFGDNPLMRWYTNNVAVKIKPDGNKEYLKKDEHRRKTDGFQA 519 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 111/473 (23%), Positives = 200/473 (42%), Gaps = 68/473 (14%) Query: 18 AFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFK---FVYLPEKAADPINFIEIL 74 A ++K V+ ++ + +A R L+DL+ D DFK F ++ I + + Sbjct: 10 AIQWSKDVISGNTLANIEQKQAAQRFLDDLES-DKWDFKHHQFDFVIGLIEGTI--VHVQ 66 Query: 75 PDVKTGK-----PYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAG 129 + K GK P L +QKF+ NL+G+ +K + +RRF +A+I + RK GKT A Sbjct: 67 GENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTN-IRRFNEALIFLPRKQGKTAFAAS 125 Query: 130 ILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDEL 189 + + + + + + + AN Q + ++ + +R DV+K ++ Sbjct: 126 LTWAKNIV--DRASGSKTYIVANSLKQTQESFGFLTYNVEKIRN---DVKKMRIRDNNQE 180 Query: 190 KNLH---DESY--IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLE--LLESGQGQLDN 242 ++H + Y I A++ +D +LDE + K + L+++ Q N Sbjct: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 Query: 243 PFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGY-----VAEQDNE------- 290 ++ ISTAG D+ + K+L G I D+ Y Y AEQD + Sbjct: 241 KLLMGISTAG-DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPV 299 Query: 291 ----EEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQS 346 I D P L+V D D + R+ LE + L K+ N++ + Sbjct: 300 TREITTIDDPEVLASVTPSLDVTVTLD---DLITEARQALLEPQLKAEFLNKSLNIF-TN 355 Query: 347 SEESYID---------KQSWELAQIDK-PDTYKRRVWLGVDVGRVSDLFAISSVIMMDDY 396 S ++Y D + SW + ++ K P T+ + G D+ ++ DL A + + +Y Sbjct: 356 SMDAYFDIDEFRFSNKQHSWTMEELSKLPITW----YGGADLSKMHDLTASA---LYGNY 408 Query: 397 WYL-DSFSFVAT-----KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDD 443 Y S V T K K + D + + +G+ ++ E+ + DD Sbjct: 409 EYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDD 461 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 56.6 bits (135), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 94/483 (19%), Positives = 189/483 (39%), Gaps = 37/483 (7%) Query: 88 FQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQL 147 FQKFI ++ + + D F + IS+AR GK I+ + + FL + + Sbjct: 66 FQKFITCFVFLY--EADTLTPYFSEFFISMARGGGKNGYISTLGAF-FLTPLHGIPKYNM 122 Query: 148 FCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRK-----ATKIVRDELKNLHDESYIRALS 202 AN QA++++ ++ + + D+ VRK I + ++ + ++ + Sbjct: 123 SVVANSEKQAQVSF---QEIYDMIESNDLYVRKDKPNNPFNISKVLIEGISMKAQFVFDT 179 Query: 203 RDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTI 262 + DG DE A + + ++ + SG G++ +P I T G + + Sbjct: 180 SNEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDGHVREGFLDKL 239 Query: 263 EYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEV-------EALHDKL 315 + +L GE ++ F ++ + D++EE+ D W K+NP+ E + + Sbjct: 240 K-ERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMFEAPMNDYGRQLFQEVK 298 Query: 316 MDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLG 375 YL + S T + + K N+ S+ D P G Sbjct: 299 QQYLSLKFNPSGRT----EFMTKRMNLPETDSQSVVAPWDDILATNRDMPSLDNHECIGG 354 Query: 376 VDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITT 435 +D + D A+ + +DD + + SF A K L + + + E +T Sbjct: 355 LDYASLKDFAAVGLLFKVDDEYIWKTHSF-ARKAFLDEYQLKPPIH----EWAEKGLLTI 409 Query: 436 LESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTM 495 ++ I + +++ E + + + D ++ L + E+ ++ +++ ++ Sbjct: 410 VDEPTISPKHIIDWFLEA--QKHYGLKKVIADNFRMDLLRPLFEENDIDYEVVKNTRAIQ 467 Query: 496 VLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNSNKIDPLDAAL 555 L P + D + I NPL+ N +K D G NK K +P+ Sbjct: 468 SLLAP--RVEDMFAQQNIIFGDNPLMRWYTGNVAVKIDKYG-----NKTYEKKEPVRRKT 520 Query: 556 DGY 558 DG+ Sbjct: 521 DGF 523 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 93/449 (20%), Positives = 192/449 (42%), Gaps = 27/449 (6%) Query: 114 MISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA 173 +++ R +GK+ L+A +L + G + A D TQA+ +D + Q + + Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEA--S 152 Query: 174 KDVDVRKATKIVRDELKNLHDESY---IRALSRDTGAVDGFEPYVGVLDEFAASKTNEML 230 + V KI + + L S+ + + DT G + + DE + ++ Sbjct: 153 DTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGEDIT 211 Query: 231 ELLESGQGQ-LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDN 289 E + G Q DN + I++ G+ + + + + + E ++ FG + +N Sbjct: 212 ESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS---EEEFYNDRSFGLLYMLEN 268 Query: 290 EEEIKDESNWIKSNPIL-EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSE 348 E++KD+ NW + P++ +V + +Y + +L+ NK L N + Q + Sbjct: 269 HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ----NKFLAFNMGLPMQDTA 324 Query: 349 ESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSF-VAT 407 Y Q +L + K R ++G+D+ + DL A+S V ++ Y + +F V + Sbjct: 325 -YYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRS 383 Query: 408 KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFD 467 +Y E+++ ++ +G E+ L++ I+ ++ I + + I +D Sbjct: 384 QYEQLDTEQQE--LWTEFVDRG--ELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYD 439 Query: 468 PYQFGTLLTMIEKRH--PEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAV 525 P ++ L +IE+ + + +N K + L + K+ H+ ++ A+ Sbjct: 440 PARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWAL 498 Query: 526 NNAYIKTDNNG-MRIDKNKNSNKIDPLDA 553 NN +K +G K +KIDP A Sbjct: 499 NNTAVKIGQSGDYMYTKKLEKDKIDPTVA 527 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 102/511 (19%), Positives = 218/511 (42%), Gaps = 31/511 (6%) Query: 56 KFVYLPEKAADPINFIEILPDVKTGKPYPLAMF--QKFIIGNLYGWRKKTDHSLR--RFR 111 K++Y ++ I +IE + TG + + QK+ + G+ + ++ Sbjct: 35 KYIYRYDRVTQAIEWIEDNFYLTTGNLMKIKLHPTQKYWYELMLGYDMVDEKGVQVNLIN 94 Query: 112 KAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSL 171 + +++ R +GK+ L+A +L + G + A D TQA+ +D + Q + Sbjct: 95 EIFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEA- 151 Query: 172 RAKDVDVRKATKIVRDELKNLHDESY---IRALSRDTGAVDGFEPYVGVLDEFAASKTNE 228 + + V KI + + L ++ + + DT G + + DE + + Sbjct: 152 -SDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGED 209 Query: 229 MLELLESGQGQ-LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQ 287 + E + G Q DN + I++ G+ + + + + + E ++ FG + Sbjct: 210 ITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS---EEEFYNDRSFGLLYML 266 Query: 288 DNEEEIKDESNWIKSNPIL-EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQS 346 +N E++KD+ NW + P++ +V + +Y + +L+ NK L N + Q Sbjct: 267 ENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ----NKFLAFNMGLPMQD 322 Query: 347 SEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSF-V 405 + Y Q +L + + K R ++G+D+ + DL A+S V ++ Y + +F V Sbjct: 323 TA-YYFTPQDTKLTEFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSV 381 Query: 406 ATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGIC 465 ++Y E+++ ++ +G E+ L++ I+ ++ I + + I Sbjct: 382 RSQYEQLDTEQQE--LWTEFVDRG--ELILLDTEYINVNDLIPYINDFRSKTGCRLRKIG 437 Query: 466 FDPYQFGTLLTMIEKRH--PEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTM 523 +DP ++ L +IE+ + + +N K + L + K+ H+ ++ Sbjct: 438 YDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQW 496 Query: 524 AVNNAYIKTDNNG-MRIDKNKNSNKIDPLDA 553 A+NN +K +G K +KIDP A Sbjct: 497 ALNNTAVKIGQSGDYMYTKKLEKDKIDPTVA 527 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 93/449 (20%), Positives = 191/449 (42%), Gaps = 27/449 (6%) Query: 114 MISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA 173 +++ R +GK+ L+A +L + G + A D TQA+ +D + Q + + Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEA--S 152 Query: 174 KDVDVRKATKIVRDELKNLHDESY---IRALSRDTGAVDGFEPYVGVLDEFAASKTNEML 230 + V KI + + L S+ + + DT G + + DE + ++ Sbjct: 153 DTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGEDIT 211 Query: 231 ELLESGQGQ-LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDN 289 E + G Q DN + I++ G+ + + + + + E ++ FG + +N Sbjct: 212 ESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS---EEEFYNDRSFGLLYMLEN 268 Query: 290 EEEIKDESNWIKSNPIL-EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSE 348 E++KD+ NW + P++ V + +Y + +L+ NK L N + Q + Sbjct: 269 HEQVKDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQ----NKFLAFNMGLPMQDTA 324 Query: 349 ESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSF-VAT 407 Y Q +L + K R ++G+D+ + DL A+S V ++ Y + +F V + Sbjct: 325 -YYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRS 383 Query: 408 KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFD 467 +Y E+++ ++ +G E+ L++ I+ ++ I + + I +D Sbjct: 384 QYEQLDTEQQE--LWTEFVDRG--ELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYD 439 Query: 468 PYQFGTLLTMIEKRH--PEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAV 525 P ++ L +IE+ + + +N K + L + K+ H+ ++ A+ Sbjct: 440 PARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLAENKLIHN-QKVMQWAL 498 Query: 526 NNAYIKTDNNG-MRIDKNKNSNKIDPLDA 553 NN +K +G K +KIDP A Sbjct: 499 NNTAVKIGQSGDYMYTKKLEKDKIDPTVA 527 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 93/449 (20%), Positives = 191/449 (42%), Gaps = 27/449 (6%) Query: 114 MISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA 173 +++ R +GK+ L+A +L + G + A D TQA+ +D + Q + + Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEA--S 152 Query: 174 KDVDVRKATKIVRDELKNLHDESY---IRALSRDTGAVDGFEPYVGVLDEFAASKTNEML 230 + V KI + + L S+ + + DT G + + DE + ++ Sbjct: 153 DTLRVYNENKIFKSTKQGLEFASFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGEDIT 211 Query: 231 ELLESGQGQ-LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDN 289 E + G Q DN + I++ G+ + + + + + E ++ FG + +N Sbjct: 212 ESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS---EEEFYNDRSFGLLYMLEN 268 Query: 290 EEEIKDESNWIKSNPIL-EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSE 348 E++KD+ NW + P++ V + +Y + +L+ NK L N + Q + Sbjct: 269 HEQVKDKKNWTMALPLIGSVPKWSGVIEEYELAQGDPALQ----NKFLAFNMGLPMQDTA 324 Query: 349 ESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSF-VAT 407 Y Q +L + K R ++G+D+ + DL A+S V ++ Y + +F V + Sbjct: 325 -YYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSHTLTFSVRS 383 Query: 408 KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFD 467 +Y E+++ ++ +G E+ L++ I+ ++ I + + I +D Sbjct: 384 QYEQLDTEQQE--LWTEFVDRG--ELILLDTEYINVNDLIPHINDFRTKTGCRLRKIGYD 439 Query: 468 PYQFGTLLTMIEKRH--PEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAV 525 P ++ L +IE+ + + +N K + L + K+ H+ ++ A+ Sbjct: 440 PARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWAL 498 Query: 526 NNAYIKTDNNG-MRIDKNKNSNKIDPLDA 553 NN +K +G K +KIDP A Sbjct: 499 NNTAVKIGQSGDYMYTKKLEKDKIDPTVA 527 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 93/449 (20%), Positives = 192/449 (42%), Gaps = 27/449 (6%) Query: 114 MISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA 173 +++ R +GK+ L+A +L + G + A D TQA+ +D + Q + + Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEA--S 152 Query: 174 KDVDVRKATKIVRDELKNLHDESY---IRALSRDTGAVDGFEPYVGVLDEFAASKTNEML 230 + V KI + + L S+ + + DT G + + DE + ++ Sbjct: 153 DTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGEDIT 211 Query: 231 ELLESGQGQ-LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDN 289 E + G Q DN + I++ G+ + + + + + E ++ FG + +N Sbjct: 212 ESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS---EEEFYNDRSFGLLYMLEN 268 Query: 290 EEEIKDESNWIKSNPIL-EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSE 348 E++KD+ NW + P++ +V + +Y + +L+ NK L N + Q + Sbjct: 269 HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ----NKFLAFNMGLPMQDT- 323 Query: 349 ESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSF-VAT 407 Y Q +L + K R ++G+D+ + DL A+S V ++ Y + +F V + Sbjct: 324 AYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRS 383 Query: 408 KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFD 467 +Y E+++ ++ +G E+ L++ I+ ++ I + + I +D Sbjct: 384 QYEQLDTEQQE--LWTEFVDRG--ELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 Query: 468 PYQFGTLLTMIEKRH--PEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAV 525 P ++ L +IE+ + + +N K + L + K+ H+ ++ A+ Sbjct: 440 PARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWAL 498 Query: 526 NNAYIKTDNNG-MRIDKNKNSNKIDPLDA 553 NN +K +G K +KIDP A Sbjct: 499 NNTAVKIGQSGDYMYTKKLEKDKIDPTVA 527 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 49.7 bits (117), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 107/495 (21%), Positives = 196/495 (39%), Gaps = 58/495 (11%) Query: 110 FRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFC----TANDRTQAKIAWDMAK 165 R+ + +++KN K+ + AGI+L + + A++ + A Sbjct: 79 IREFFLLISKKNTKSTIAAGIMLTAVILCWREEEEHLILAPTKEVADNSFKPAAGMIRAD 138 Query: 166 KQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDE--FAA 223 +LS L +R T V + ++ ++ DT V G + ++DE Sbjct: 139 AELSELFHVQDHIRTITHRV--------SRASLKVVAADTDTVSGKKSGKILIDEHWVFG 190 Query: 224 SKTNEMLELLESGQGQL--DNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYF 281 + N +E+ GQ+ D +++I++T + + + Y + DG+I D Sbjct: 191 KRANAEAMFMEATGGQVSRDEGWVIILTTQSDEPPAGVFKEKLQYYRDVRDGKIVDRKSL 250 Query: 282 GYVAEQDNEEEIK-----DESNWIKSNPIL----EVEALHDKLMDYLRTRRRVSLE---T 329 G + E EE +K D +N+ +NP L E L D+L + +RT+ S + Sbjct: 251 GVLYEFP-EEMVKSKAYLDPANYYITNPNLGRSVSAEWLEDQL-NKIRTKTDGSFQQFIA 308 Query: 330 GEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISS 389 +N + N R + + +I+ E + + G+D G + DL +S+ Sbjct: 309 KHLNVEIGMNLRSDRWAGADFWINAGLPERVTLLDLIEQCEVIAAGIDGGGLDDLLGLSA 368 Query: 390 VIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEK 449 V + +++ + + K + + E+ G I + R+ E Sbjct: 369 VGRVRGGRNWLAWAHAWAHPSVLERRKEIAPALHDFEKAGDLTIVS---------RIGED 419 Query: 450 IEEMV-YTNEWEVNGICF----DPYQFGTLL-TMIEKRHPEWPLIEVSQT-TMVLNMPTK 502 + + Y E G+ + DP G +L + R PE +I +SQ + + T Sbjct: 420 VVQAAEYVARIERAGLLYKAGVDPAGIGAILDALAAARVPEDKVIGISQGWKLSGAIKTT 479 Query: 503 QFR-----------DDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKN-KNSNKIDP 550 + R D+ G + H G PLLT AV NA + N + I K + KIDP Sbjct: 480 ERRIAAASGQRIEGDEAPDGALYHGGQPLLTWAVGNARVVPVGNAVNITKQVSGTAKIDP 539 Query: 551 LDAALDGYAVCYLEP 565 L A + ++ L P Sbjct: 540 LMALFNAVSLMALNP 554 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 49.7 bits (117), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 104/507 (20%), Positives = 204/507 (40%), Gaps = 51/507 (10%) Query: 62 EKAADPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKN 121 +KA +FIE + + + + + K ++ +Y T + + F ++ V R N Sbjct: 35 KKAEKIFDFIEEFMTLPNNERFKIIPYHKAVLTLMYC----TPYQIDEF---VVIVGRSN 87 Query: 122 GKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKI-----AWDMAKKQLSSLRAKDV 176 K+IL I L E P+ L T D+ + + A + + + Sbjct: 88 AKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRAMGNCQGTIINKFKNQF 147 Query: 177 DVRKATKIVRDE--LKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLE 234 + K +V+D LK+ E I A + DT +DG + ++DEF A K N ++ + Sbjct: 148 KLNKEQILVKDNSILKSKGTEISIYASNEDT--LDGGREQLVIIDEFGAFKKNPLITI-- 203 Query: 235 SGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIK 294 QG N L IST + + E + + + D ++ + D+ +E+K Sbjct: 204 -RQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEWVKDD--DFSHWVFYYALDDYDEVK 260 Query: 295 DESNWIKSNPILEVE-ALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID 353 D S +IK+NP L +L D D++ ++ K++ K FN+ + + Sbjct: 261 DSSKYIKANPALGYTLSLEDIQKDFIGAIGN----PVKMAKIITKRFNL-SMTDSTTIFS 315 Query: 354 KQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTA 413 KQ + + D R V +G D D++ + ++Y + + Sbjct: 316 KQLVDKCLVPPLDFSGRLVAIGSDFSVRGDVWGTVIGYRENGHYYFKAIPVMPESAEDKF 375 Query: 414 KEKRDGVSY---SNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQ 470 K + +++ +N+ + + + +G + + +DP Sbjct: 376 KHLGETITHEGINNMTDEAWDAFMSAMNGSVPI-------------------ALNYDPNY 416 Query: 471 FGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYI 530 + E+ + +V Q + L+ + + +++GKI H + LL + + NA Sbjct: 417 AKNFIDKFEQTYDIEFYNKVMQNSFKLSNTLEATQKLMEEGKI-HFDSKLLAVHLMNAET 475 Query: 531 KTDNNG-MRIDKNKNSNKIDPLDAALD 556 K ++ G MRI K ++KID DA ++ Sbjct: 476 KINDFGLMRIIKKGYTDKIDLADALIN 502 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 46.2 bits (108), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 464 ICFDPYQFGTLL-TMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLT 522 I DP G +L ++ E P+ ++ +SQ L K L +G + H G PL+ Sbjct: 439 IGIDPSGVGQILDSLAEAGIPDGIVVGISQGWK-LGGAIKTTERKLAEGVLVHGGQPLMA 497 Query: 523 MAVNNAYIKTDNNGMRIDKNKNS-NKIDPLDAALDGYAVCYLEP 565 V NA ++ N + I K + KIDPL A + ++ L P Sbjct: 498 WCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSLMSLNP 541 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 8/189 (4%) Query: 106 SLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAK 165 +R ++ I + +KN K+ L AGI++ L + + + A A++ A+ Sbjct: 77 GVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTVE--VAANAFNPAR 134 Query: 166 KQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEF---- 221 + D + T I + + ++ ++ ++ D V G + ++DE Sbjct: 135 DMVRRDDDLDDLCQVQTHI--RTITHRVTDTTLKVVAADPNTVSGIKSVGTLIDELWLFG 192 Query: 222 AASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYF 281 K +ML G F++ +T + + + Y + DG+I D + Sbjct: 193 KQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVRDGKIHDPHFL 252 Query: 282 GYVAEQDNE 290 + E E Sbjct: 253 PVIFEHPPE 261 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 40.4 bits (93), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 77/369 (20%), Positives = 148/369 (40%), Gaps = 28/369 (7%) Query: 198 IRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNV 257 R +S A++G + V+DEF N + + E G N +L+ T+ + Sbjct: 149 FRIVSAADSALNGGREKLAVVDEFGTFPNNPLPTIRE---GLEKNEGLLLTITSNNKVRG 205 Query: 258 PMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMD 317 + E D E+ + +G + E D+ +I+D + W K+NP L+ Sbjct: 206 GAYDEELDTFRGYND-EMDNFKQWGLIFELDDYSQIEDPNEWYKANPALDEAKGTVSTET 264 Query: 318 YLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDT-YKRRVWLGV 376 R T + N + K FN + + ++ + +D Y + LG Sbjct: 265 ITRELNAARHSTIKANNLFSKRFNFSVNAVTSFFTAEEIEIVTDLDFEKVFYDKWAVLGC 324 Query: 377 DVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYC--EIT 434 D D + + ++D Y+ Y + + K Y +L Y + Sbjct: 325 DFSLSGDTWGNVLLTKVEDTLYI---------YPIPIRPKNVADKYKHLSGTFYHDEDKN 375 Query: 435 TLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIE-VSQT 493 ++ V + + +K++E+ + GI +DP L + E+ + L+E V Q Sbjct: 376 DTQAAV---KLLFDKLQEL----RIGLVGIGYDPAYSANFLYLFEQNKIKARLMEKVKQN 428 Query: 494 TMVLNMPTKQFRDDLK-KGKIKHSGNPLLTMAVNNAYIK-TDNNGMRIDKNKNSNKIDPL 551 ++ + LK +G + +S ++ + NA +K D +R+ K + +KID + Sbjct: 429 AFTVSQHIMSLQRLLKTRGLLYNS--EIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLV 486 Query: 552 DAALDGYAV 560 DAA++ AV Sbjct: 487 DAAVNALAV 495 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 39.7 bits (91), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 92/493 (18%), Positives = 171/493 (34%), Gaps = 53/493 (10%) Query: 83 YPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFL-FGHNP 141 Y L FQKFI ++ A+ + K ++ +Y FG N Sbjct: 67 YKLFPFQKFIYAFVF---------------AVFEIDEDGDKQLMFNDYFIYAGRGFGKNG 111 Query: 142 SMSRQLF-CTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRA 200 +S +F CT + D+ + D+ + +D +KN++ + + Sbjct: 112 LLSCMIFECTTKNHGVDHYNIDIVATSEDQAKTSFEDIYNMLEENKDTMKNVYRWNLVAI 171 Query: 201 LSRDTGAV-----------DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIIS 249 R G+ DG P DE A + + SG G+ + ++ Sbjct: 172 QHRKNGSTIKYKTSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLT 231 Query: 250 TAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNP-ILEV 308 T G + + ++L+GE + F ++ + D+ +E+++++ W K+NP IL Sbjct: 232 TDGYVRGSVLDDRKV-LAQQVLNGEKPNSKMFPFICKLDSPDEVQNKTKWAKANPMILYY 290 Query: 309 EALH---DKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKP 365 + L D+ D ++ + +E + K N Q + + P Sbjct: 291 KPLRIEIDQHWDDAQSSSEIMVE------FMTKRMNCPTQDPTTVAVKWDDIKATNQPMP 344 Query: 366 DTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNL 425 G+D V D A+ + + + +F+ + + K + Sbjct: 345 SLKMAPAIGGIDFADVRDFCAVGLLFKKEGKYIFKHHTFICAE---SLKITKFKFPIHEA 401 Query: 426 ERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEW 485 +G T + ID++ L+ E E + I D +++ +L Sbjct: 402 VEKGLA--TIIHDNYIDEDYPLQWFLEQA--KEHRIINIATDSFRYKSLKEAFTSAGA-- 455 Query: 486 PLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDNNGMRIDKNKNS 545 PLI+V N + KI + L+ NN IK D G K Sbjct: 456 PLIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARG-----EKTY 510 Query: 546 NKIDPLDAALDGY 558 KI+P DG+ Sbjct: 511 IKIEPKTRKTDGF 523 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 67/288 (23%), Positives = 118/288 (40%), Gaps = 28/288 (9%) Query: 113 AMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLR 172 ++IS+ R+ GKT LI I+ L P ++ + TA+ AK + + K + + Sbjct: 63 SVISIPRQVGKTYLIGCIVFALALL--TPGLT--VIWTAHRTKTAKETFG-SMKAMCATP 117 Query: 173 AKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFEPY-VGVLDEFAASKTNEMLE 231 + VR + DE LH+ S I +R+ G GF + VLDE A T++ ++ Sbjct: 118 LVNAHVRNVSDARGDEGIYLHNGSRILFGARENGFGLGFAGVGILVLDE-AQRLTDKAMD 176 Query: 232 LLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYITKI----LDGEITDEGYFGYVAEQ 287 L ++NP IL+ T P T T + LDGE Y + A++ Sbjct: 177 DLIPTMNTVENPLILLTGTP------PRPTDSGEVFTMLRQDALDGESEGTLYVEFSADE 230 Query: 288 DNEEEIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSS 347 + D + K+NP + R R+ ++ E+ L + F +W + Sbjct: 231 GAHPD--DRAQLRKANPSYPHRTSERAIR---RMRKNLTEES-----FLREAFGIWDKVV 280 Query: 348 EESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDD 395 + W + P + GVD+ S + ++++V + D Sbjct: 281 HRPVVTAARWRRLESTGPAAGVKPNGFGVDMSH-SRMVSVNAVWLDGD 327 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 64/284 (22%), Positives = 105/284 (36%), Gaps = 37/284 (13%) Query: 109 RFRKAMISVARKNGKTILIAGILLYEFLF---GHNP-SMSRQLFCTANDRTQAKIAWDMA 164 RFRKA++ V R+NGKT LIA +L +L+ G P + Q F A D+A Sbjct: 62 RFRKALVIVGRQNGKT-LIAAVLAAYWLYVDAGRWPDQLPEQDFIVVG----AAQKLDIA 116 Query: 165 KKQLSSLRAKDVDVRKATKIVRDELKNLH----------DESYIRA------LSRDTGAV 208 K +R I RD + +L E+ +R L R Sbjct: 117 MKPWRQVRRWGAPDDPKVGIARDRVPDLQAFTYPPRTTNGETELRTHGGAAYLPRTFEGA 176 Query: 209 DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYIT 268 G +LDE E +E + + ++ S AG + + + Sbjct: 177 RGQSAARLILDELREQYDYEGWSAIEKSANAMFDSLLVAFSNAGTKRSRVLRDVR----- 231 Query: 269 KILDGEITDEGYFGYVAEQDNEEE--IKDESNWIKSNPILEVEALHDKLMDYLRTRRRVS 326 +I + D ++AE E + + DE + ++NP L + L R + Sbjct: 232 QIGHEGVDDRETQWFIAEWSAEPDASLDDERAFAQANP--SAGYLAGMTIAGLM---RAA 286 Query: 327 LETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKR 370 E E N I+ W + +++ID + W+ D + R Sbjct: 287 AEAKEKNVERIEVLGQWVTAKVDNFIDSEEWKSRHRDVASIFAR 330 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/316 (21%), Positives = 124/316 (39%), Gaps = 41/316 (12%) Query: 95 NLYGWRKKT--------DHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQ 146 + Y W+K + L +K S+ R+NGK+ L+ ++ G N Sbjct: 39 SCYAWQKNLLLPMMAVDKNGLWVHQKFGYSIPRRNGKSELLYIGEIWGLHEGLN------ 92 Query: 147 LFCTANDRTQAKIAWDMAKKQLSSLR---AKDVDVRKATKIVRDELKNLHDESYIRALSR 203 + TA+ + + +++ K+ L + +D + +A R EL + R + Sbjct: 93 ILHTAHRISTSHASFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVIQFRTRTS 152 Query: 204 DTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIE 263 + G +GF+ + +DE A T E L+ +NP ++ T P Sbjct: 153 NGGLGEGFDMLI--IDE-AQEYTTEQESALKYTVTDSENPITIMCGTP------PTPVSS 203 Query: 264 YPYITKILDGEITDEGYFGYVAEQD--NEEEIKDESNWIKSNPILEVEALHDKLMDYLRT 321 TK + + +G + AE +E+EI D W SNP M Y Sbjct: 204 GTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPS----------MGYHLN 253 Query: 322 RRRVSLETGEINKV--LIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVDVG 379 R++ E GE +K+ I+ W +++S I + W ++D ++ +G+ G Sbjct: 254 ERKIEAELGE-DKLDHNIQRLGFWPTYNQKSAISETEWNELKMDDIPELSGKLSVGIKYG 312 Query: 380 RVSDLFAISSVIMMDD 395 + A+S +D Sbjct: 313 QDGTNVAMSIAARTND 328 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 28/234 (11%) Query: 83 YPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAG---ILLY---EFL 136 + L +Q+F++ N+ + + +A++ V R+NGKT +I + LY + L Sbjct: 59 FELDPWQEFVLRNMLNLDAQGHWAAS---EALLLVPRQNGKTAIIEARELVGLYVVCDKL 115 Query: 137 FGHNPSMSRQLFCTAND---RTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLH 193 H + LF A + R +A+I + +++ R+ + ++ K + E ++ + Sbjct: 116 CIH----TAVLFNAARESFYRLKARIENNETLNKITRFRSGNDNMSIEVK-PKKESRHPN 170 Query: 194 DESYIRALSRDTGAVDGFEPYVGVLDE-FAASKTNEMLELLESGQGQLDNPFILIISTAG 252 + ++R T GF V VLDE FA + + + ++ NPFI+ S+ G Sbjct: 171 AGGRVIYMARGTAVARGFSADVIVLDEAFALDEAS--IAAIDYATSARANPFIIYASSTG 228 Query: 253 MDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDNEEEIKDESNWIKSNPIL 306 ++ + + K+ D + + ++ ++ DE N+ +SNP L Sbjct: 229 LEDSTELE--------KLHDRGMRQDPDMLFMEWCATTRDLDDEENYYRSNPAL 274 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 33.5 bits (75), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 21/208 (10%) Query: 88 FQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQL 147 F ++I G+ + +T H+L ++ V +K+ K+ + +G++L + + G S S + Sbjct: 65 FVRYIFGS---YNAETGHNL--IKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 Query: 148 FCTANDRTQA--KIAWDM--AKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSR 203 + QA K A D A QLS L +++ T+ L N + ++ ++ Sbjct: 120 VAPTIEVAQASFKPASDSVRADPQLSKL----INISTHTRT----LTNRVSGAVLKVIAA 171 Query: 204 DTGAVDGFEPYVGVLDEF--AASKTNEMLELLESGQGQLDNP--FILIISTAGMDLNVPM 259 D +V G + V ++DE +K N L E+ G P FI+ +ST + + Sbjct: 172 DENSVTGSKASVLLVDECHRLGTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGV 231 Query: 260 HTIEYPYITKILDGEITDEGYFGYVAEQ 287 + I DG + D+ FG + E Sbjct: 232 FKDDLDLFRSIRDGIVVDKRRFGVLYEH 259 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 14/97 (14%) Query: 345 QSSEESYIDKQSWELAQIDKPDTYKRR-VWLGVDVGRVSDLFAISSV-----------IM 392 Q E + +D WE + +PD + RR VW+G D R D + V ++ Sbjct: 394 QDMERAGVDPTRWEDYKPGRPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVL 453 Query: 393 MDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQG 429 YW +F + A + AK+ R V+Y ++ G Sbjct: 454 EKHYWRGLNFQYQAQEIERIAKKFR--VTYLGVDVSG 488 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 32.0 bits (71), Expect = 0.019, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 43/289 (14%) Query: 247 IISTAGMDLNVPMHTIEYPYITKILDGEITD---EGYFGYVAEQDNEEEI-KDESNWIKS 302 I++ +D V +E P T + + EGY VA+ EI + +S W+ Sbjct: 258 ILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPL 317 Query: 303 NPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ- 361 + IL + L K D + +RR+ +N+V ++EES+I W+ Sbjct: 318 DDIL-MSVLTAK-NDVIESRRKF------LNQV---------NATEESWIAPSEWDRNHD 360 Query: 362 IDKPDTYK-RRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGV 420 I+ P K R+ LG D +D A+++ + D +L +V KY ++D Sbjct: 361 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKV-WVPEKYEGHKVPRQDVD 419 Query: 421 SYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK 480 +Y + Y ++ + + V + E+ ++ + + + +N +P F Sbjct: 420 AYVRSMFEKY-DVVGMRADVKEFEQSVDAWGQD-FRRKLRINASPGNPVAFD-------- 469 Query: 481 RHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 + Q L+ ++FRD + G++KH NP+L + NA+ Sbjct: 470 -------MRGQQKRFALD--CERFRDAVLAGEVKHDNNPVLKAHITNAH 509 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 32.0 bits (71), Expect = 0.020, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 43/289 (14%) Query: 247 IISTAGMDLNVPMHTIEYPYITKILDGEITD---EGYFGYVAEQDNEEEI-KDESNWIKS 302 I++ +D V +E P T + + EGY VA+ EI + +S W+ Sbjct: 599 ILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPL 658 Query: 303 NPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ- 361 + IL + L K D + +RR+ +N+V ++EES+I W+ Sbjct: 659 DDIL-MSVLTAK-NDVIESRRKF------LNQV---------NATEESWIAPSEWDRNHD 701 Query: 362 IDKPDTYK-RRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGV 420 I+ P K R+ LG D +D A+++ + D +L +V KY ++D Sbjct: 702 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKV-WVPEKYEGHKVPRQDVD 760 Query: 421 SYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK 480 +Y + Y ++ + + V + E+ ++ + + + ++N +P F + +K Sbjct: 761 AYVRSMFEKY-DVVGMRADVKEFEQSVDAWGQD-FRRKLKINASPGNPVAFD--MRGQQK 816 Query: 481 RHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 R + ++FRD + G++KH NP+L + NA+ Sbjct: 817 R---------------FALDCERFRDAVLAGEVKHDNNPVLKAHITNAH 850 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 29.3 bits (64), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 21/208 (10%) Query: 88 FQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQL 147 F +++ G+ + T H+L ++ V +K+ K+ + +G++L + G S + + Sbjct: 73 FCRYVFGS---YNADTGHNL--IKEFFCLVPKKSSKSSIASGVMLTMLITGWRKSATYMI 127 Query: 148 FCTANDRTQA--KIAWDM--AKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSR 203 + QA K A D A QLS L + + TK L N + ++ ++ Sbjct: 128 VAPTIEVAQASFKPAADSVRADPQLSKL----IQISAHTKT----LTNRVSGAVLKIVAA 179 Query: 204 DTGAVDGFEPYVGVLDEF--AASKTNEMLELLESGQGQLDNP--FILIISTAGMDLNVPM 259 D V G + V ++DE +K N L E+ G P FI+ +ST + + Sbjct: 180 DENTVTGSKASVLLVDECHRLGTKENGGSMLREAAGGLAARPEGFIIKLSTQSSEPPAGV 239 Query: 260 HTIEYPYITKILDGEITDEGYFGYVAEQ 287 + + DG +TD+ FG + E Sbjct: 240 FKDDLELFRNVRDGVVTDKRRFGVLYEH 267 >gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp2, terminase # Family: family:all:523 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456732;genbank:gi:157168375;interpro:I PR005021;uniprot:Q9MBK3;genbank:GeneID:5580375 Length = 542 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 53/273 (19%), Positives = 109/273 (39%), Gaps = 27/273 (9%) Query: 109 RFRKAMISVARKNGKTILIAGILLYE-FLFGHNPSMSRQ--------------LFCTAND 153 RFR+ ++ V R+NGKT+++ + L++ F+ G + ++ + AN Sbjct: 69 RFRQLVLLVGRQNGKTLVMVILGLWKLFIDGCSEIVTAAQDLSVAEATLSNAFMLAKANP 128 Query: 154 RTQAKIAWDMAKKQL-----SSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAV 208 + W M + ++ ++ + +++ A ++ + ++ A +R G Sbjct: 129 DLNQWLPWRMERGEMVPFMRTANGSNQIELAYAPVPEALDVFGAMPKWFVVATNRGGGRS 188 Query: 209 DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMHTIEYPYIT 268 E + +LDE + + + + S AG + +V + + Sbjct: 189 HSAE--LAMLDELREHTDFQSWGAITPAVAERPRNQVYGFSNAGDEKSVVLRKQRNICLK 246 Query: 269 KILDGEITDEGYFGYVAEQDNEE-EIKDESNWIKSNPILEVEALHDKLMDYLRTRRRVSL 327 +I DG ITD+ EE I D W +NP L +K M L R + Sbjct: 247 EISDG-ITDQSQLAIFEWSAPEECSIFDRDGWAAANPSLGYGNRDEKTMLSL-ARAALDP 304 Query: 328 ETGEINKVL--IKNFNMWRQSSEESYIDKQSWE 358 E E ++ L I+ W ++ E+ + + +W+ Sbjct: 305 EDDEADENLFRIEYLCQWVKTLEQGKVKRDTWD 337 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 28.1 bits (61), Expect = 0.29, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 159 IAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTG 206 AW + + S +D D+R A +I R E++NL+D+ Y + D+G Sbjct: 553 FAWLTTQPRFSDFTERD-DMRLANEIFRQEMENLYDD-YTPVVIVDSG 598 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 28.1 bits (61), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 27/125 (21%) Query: 345 QSSEESYIDKQSWELAQIDKPDTYKRR--------VWLGVDVGRVSDLFAISSVIMMDDY 396 +S+E + +W A I++ + R+ +W GVDVGR D +V+ D Sbjct: 263 HASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGRGGD----ETVLAARDG 318 Query: 397 WYLDSFSFVATKYGLTAKEKRDGVSYSNL----ERQGYCEITTLESGVIDDERVLEKIEE 452 W + L +RD ++ L E + ++ L +GV D R L Sbjct: 319 WAVT----------LETNRRRDTMATVGLIQAREGRAIIDVIGLGAGVFDRLREL-GTRP 367 Query: 453 MVYTN 457 + YT Sbjct: 368 LAYTG 372 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 27.3 bits (59), Expect = 0.44, Method: Compositional matrix adjust. Identities = 47/221 (21%), Positives = 84/221 (38%), Gaps = 36/221 (16%) Query: 349 ESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATK 408 + Y+DK +ELA +D+ +++ LG D + +D A+ + D ++ Sbjct: 387 DKYLDKMGFELAPLDR----GQKITLGFDGSKSNDWTALVGCRVSDGLLFVIDIWDPQKY 442 Query: 409 YGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDP 468 G +E D +S R ++ + V + E ++ Y + +VN +P Sbjct: 443 GGEVPREFVDAAVHSAFSRY---DVVAFRADVKEFEAYVDSWGR-TYKKKLKVNASPNNP 498 Query: 469 YQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNA 528 F + +KR ++ D + +G++ H GNP+L V NA Sbjct: 499 VAFD--MRGQQKR---------------FAFDCERLEDAVLEGEVWHDGNPVLRQHVLNA 541 Query: 529 Y---IKTDNNGMRIDKNKNSNKIDPLDAALDGYAVCYLEPF 566 D +R +S KID AVC + F Sbjct: 542 KRHPTTYDAIAIRKVTKDSSKKID--------AAVCAVLAF 574 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 26.6 bits (57), Expect = 0.77, Method: Compositional matrix adjust. Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 34/192 (17%) Query: 346 SSEESYIDKQSWELAQID--KPDTYKRRVWLGVDVGRVSDLFAISSV------IMMDDYW 397 +SE+S++ W+ +P T ++ LG D + +D A+ + + + DYW Sbjct: 344 ASEDSWLAPADWDKCHSTSLRPLTKGDKITLGFDGSKSNDWTALVACRVEDGAVFLIDYW 403 Query: 398 YLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTN 457 +++ G KE D V S ++ E+ + V + E +++ ++ + Sbjct: 404 NPENY-----PSGEVPKEDVDAVVRSMKDKY---EVVAFRADVKEFEAYVDQWGQL-FRR 454 Query: 458 EWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSG 517 +VN +P F ++ T + ++F D + + ++ H Sbjct: 455 TIKVNASPGNPVAF-----------------DMRGQTKRFALDCERFADAVLEQELVHDN 497 Query: 518 NPLLTMAVNNAY 529 NP++ + NA+ Sbjct: 498 NPVMKAHITNAH 509 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 8/58 (13%) Query: 81 KPYP---LAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEF 135 +P P LA+ Q++ ++ W R + ++ R+ GK++L + +LYEF Sbjct: 61 EPLPEDELAILQRWAEQDVTTWVPD-----RSYVNMVLECGRRGGKSVLASICVLYEF 113 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%) Query: 85 LAMFQKFIIGNLYGWRKKTDHSLRRFRK--------AMISVARKNGKTILIAGILLYEFL 136 L F I L+GW+ + R + + R+NGKT LIA ++Y Sbjct: 64 LGRFAHKIEEALFGWQWDAARKIMATRPDGLWAHPDVCLIIPRQNGKTQLIALRIIYGLF 123 Query: 137 F 137 F Sbjct: 124 F 124 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 47/236 (19%), Positives = 85/236 (36%), Gaps = 44/236 (18%) Query: 346 SSEESYIDKQSWELAQID------------KPDTYKRRVWLGVDVGRVSDLFAISSVIMM 393 ++E+S++ Q W Q+D P R+ LG D + +D A+ + Sbjct: 366 AAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALVGCRVS 425 Query: 394 DDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEM 453 D ++ G +E D +S + ++ + V + E +++ Sbjct: 426 DGLLFVIDIWDPQKYGGEVPREDVDAKVHSAF---AHYDVVAFRADVKEFEAYVDQWGR- 481 Query: 454 VYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKI 513 Y + +VN +P F + +KR ++ D + +G++ Sbjct: 482 TYKKKLKVNASPNNPVAFD--MRGQQKR---------------FAFDCERLEDAVLEGEV 524 Query: 514 KHSGNPLLTMAVNNAYIKTDNN---GMRIDKNKNSNKIDPLDAALDGYAVCYLEPF 566 H GNP+L V NA N +R +S KID AVC + F Sbjct: 525 WHDGNPVLRQHVLNAKRHPTNYDAIAIRKVTKDSSKKID--------AAVCAVLAF 572 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%) Query: 552 DAALDGYAVCYLEPFD-GSGYWTNEKIIG 579 D DG ++CY +P+ G W + I G Sbjct: 171 DGVEDGISICYFKPYSQGRARWQGDTIHG 199 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 11/78 (14%) Query: 297 SNWIKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEES-YIDKQ 355 S I NPIL D+L + R LE V F W+ +E S Y +Q Sbjct: 283 SGTIDDNPIL----------DFLEPKYRGKLENNTPVNVARLRFGNWKARAEGSNYWQRQ 332 Query: 356 SWELAQIDKPDTYKRRVW 373 E+ D + R W Sbjct: 333 WCEIVDSLPEDVFDVRAW 350 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%) Query: 58 VYLPEKAADPINFIEILPDVKTGKPYPLAMF--------QKFIIGNLYGWRKKTDHSLRR 109 ++ E DP++ I L D KP P F FI + G+RKK+DH++ Sbjct: 312 IWFAEVQNDPLDSIFKLLD----KPIPDVPFDWENMEADAAFITVDPAGFRKKSDHNVAT 367 Query: 110 FRK 112 K Sbjct: 368 LHK 370 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 108 RRFRKAMISVARKNGKTILIAGILL 132 RR+ A I +ARKNGK + + +L Sbjct: 77 RRYEIAWIELARKNGKALDVETPIL 101 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 556 DGYAVCYLEPFD-GSGYWTNEKIIG 579 DG ++CY +P+ G W + I G Sbjct: 193 DGISICYFKPYSQGRARWQGDTIHG 217 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 24.3 bits (51), Expect = 4.2, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 556 DGYAVCYLEPF-DGSGYWTNEKIIG 579 DG ++CY +P+ G W + I G Sbjct: 175 DGISICYFKPYSQGRARWQGDTIHG 199 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 159 IAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFE 212 AW +++ S D D+R A ++ R E++ L+D+ Y+ + D G D FE Sbjct: 554 FAWLTTQERFSDFTEND-DMRLANEVFRKEMEELNDD-YMPMVIVDDGE-DTFE 604 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Query: 348 EESYIDKQSWELAQIDKPDTYK----RRVWLGVDVGRVSD----LFAISSVIMMDDYWYL 399 E +D W Q KP+ + R VWLG D R D + ++ ++ + L Sbjct: 402 ERCMVDSDIW---QDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVL 458 Query: 400 DSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLESGVID 442 + ++ + A E N+ G +IT + +GV D Sbjct: 459 EKHTWRGLSFQHQASEISKVFERFNVTYLG-IDITGIGAGVHD 500 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 23.5 bits (49), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Query: 159 IAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRALSRDTGAVDGFE 212 AW +++ S D D+R A ++ R E++ L+D+ Y+ + D G D FE Sbjct: 554 FAWLTTQERFSDFTEND-DMRLANEVFRKEMEELNDD-YMPMVIVDDGE-DTFE 604 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 23.5 bits (49), Expect = 6.8, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 501 TKQFRDDLKKGKIKHSGNPLLTMAVNNA 528 ++F D + + ++ H GNP+L V NA Sbjct: 485 CERFLDAVIEQEVFHDGNPVLKQHVCNA 512 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.136 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 281,659 Number of Sequences: 514 Number of extensions: 13988 Number of successful extensions: 417 Number of sequences better than 100.0: 108 Number of HSP's better than 100.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 123 length of query: 584 length of database: 206,069 effective HSP length: 77 effective length of query: 507 effective length of database: 166,491 effective search space: 84410937 effective search space used: 84410937 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)