BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:1263|NCBI_annot:hypothetical protein|genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID:95520 7 (416 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 871 0.0 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 547 e-158 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 547 e-158 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 546 e-157 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 546 e-157 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 541 e-156 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 289 5e-80 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 236 5e-64 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 180 3e-47 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 177 2e-46 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 171 2e-44 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 171 2e-44 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 171 2e-44 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 171 2e-44 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 171 2e-44 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 171 2e-44 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 167 2e-43 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 164 2e-42 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 161 2e-41 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 159 5e-41 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 152 5e-39 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 149 5e-38 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 149 7e-38 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 149 7e-38 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 147 2e-37 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 144 1e-36 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 139 4e-35 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 133 3e-33 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 133 3e-33 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 121 2e-29 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 120 3e-29 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 120 3e-29 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 120 4e-29 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 120 4e-29 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 117 2e-28 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 113 3e-27 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 112 1e-26 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 104 2e-24 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 100 3e-23 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 100 4e-23 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 99 1e-22 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 99 1e-22 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 98 2e-22 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 98 2e-22 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 97 3e-22 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 94 2e-21 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 94 2e-21 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 93 7e-21 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 87 4e-19 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 84 4e-18 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 82 1e-17 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 80 5e-17 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 76 6e-16 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 76 8e-16 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 75 1e-15 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 72 1e-14 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 71 2e-14 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 70 5e-14 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 70 5e-14 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 70 6e-14 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 56 1e-09 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 55 1e-09 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 55 2e-09 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 55 2e-09 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 53 8e-09 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 52 1e-08 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 44 4e-06 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 44 4e-06 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 40 7e-05 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 35 0.001 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 34 0.004 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 33 0.006 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 32 0.010 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 32 0.012 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 32 0.013 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 32 0.016 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 31 0.023 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 31 0.023 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 31 0.024 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 31 0.028 gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 30 0.041 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 30 0.041 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 30 0.043 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 27 0.48 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 25 1.4 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 25 2.1 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 25 2.1 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 25 2.3 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 23 5.5 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 23 6.8 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/416 (100%), Positives = 416/416 (100%) Query: 1 MLRKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGI 60 MLRKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGI Sbjct: 1 MLRKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGI 60 Query: 61 LAGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPT 120 LAGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPT Sbjct: 61 LAGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPT 120 Query: 121 QEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREA 180 QEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREA Sbjct: 121 QEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREA 180 Query: 181 RKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQ 240 RKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQ Sbjct: 181 RKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQ 240 Query: 241 YTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVA 300 YTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVA Sbjct: 241 YTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVA 300 Query: 301 LEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLT 360 LEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLT Sbjct: 301 LEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLT 360 Query: 361 SVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGEELIIN 416 SVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGEELIIN Sbjct: 361 SVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGEELIIN 416 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 547 bits (1410), Expect = e-158, Method: Compositional matrix adjust. Identities = 255/404 (63%), Positives = 315/404 (77%), Gaps = 1/404 (0%) Query: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIEL 68 K+ K A+ERF +D + +D P+YFD E DFY ++++F HVEGILAG+ +EL Sbjct: 19 KINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGILAGESVEL 78 Query: 69 TDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKHRVFI 128 TDFQLF+AANI+GF KK NGARRFRK +IQLARKNAKSQFLA++A++ F EK R +I Sbjct: 79 TDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYI 138 Query: 129 AGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKN 188 AGW+R+QS EVY+A+ + + +L+GK+ A ++ +K S++ PLS+EARK GDGKN Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 Query: 189 PSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDP 248 PSLGIVDEYHAHET EIYDVL SGMVAR+ PLM +ITTAGF++ RPC++EY+Y S ILDP Sbjct: 199 PSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDP 258 Query: 249 DIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMR 308 + ENDDYFVMICEL+ DDIKDESNWIKANPIVATY EG+E +RS LKVAL+ PEKMR Sbjct: 259 SKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMR 318 Query: 309 SFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQ 368 +FLTKNMN WVD+KDNGYM M+KW+ C + D G +++G DLSMTTDLTSVG+V + Sbjct: 319 AFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTXDFSGATLWIGGDLSMTTDLTSVGWVGMD 378 Query: 369 D-GFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGE 411 D G F VGQHSFMP+AR EKMA DKV YDLW E G++T T GE Sbjct: 379 DEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGE 422 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 547 bits (1409), Expect = e-158, Method: Compositional matrix adjust. Identities = 255/404 (63%), Positives = 315/404 (77%), Gaps = 1/404 (0%) Query: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIEL 68 K+ K A+ERF +D + +D P+YFD E DFY ++++F HVEGILAG+ +EL Sbjct: 19 KINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGILAGESVEL 78 Query: 69 TDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKHRVFI 128 TDFQLF+AANI+GF KK NGARRFRK +IQLARKNAKSQFLA++A++ F EK R +I Sbjct: 79 TDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYI 138 Query: 129 AGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKN 188 AGW+R+QS EVY+A+ + + +L+GK+ A ++ +K S++ PLS+EARK GDGKN Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 Query: 189 PSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDP 248 PSLGIVDEYHAHET EIYDVL SGMVAR+ PLM +ITTAGF++ RPC++EY+Y S ILDP Sbjct: 199 PSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDP 258 Query: 249 DIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMR 308 + ENDDYFVMICEL+ DDIKDESNWIKANPIVATY EG+E +RS LKVAL+ PEKMR Sbjct: 259 SKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMR 318 Query: 309 SFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQ 368 +FLTKNMN WVD+KDNGYM M+KW+ C + D G +++G DLSMTTDLTSVG+V + Sbjct: 319 AFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTLDFSGATLWIGGDLSMTTDLTSVGWVGMD 378 Query: 369 D-GFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGE 411 D G F VGQHSFMP+AR EKMA DKV YDLW E G++T T GE Sbjct: 379 DEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGE 422 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 546 bits (1408), Expect = e-157, Method: Compositional matrix adjust. Identities = 255/404 (63%), Positives = 315/404 (77%), Gaps = 1/404 (0%) Query: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIEL 68 K+ K A+ERF +D + +D P+YFD E DFY ++++F HVEGILAG+ +EL Sbjct: 19 KINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGILAGESVEL 78 Query: 69 TDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKHRVFI 128 TDFQLF+AANI+GF KK NGARRFRK +IQLARKNAKSQFLA++A++ F EK R +I Sbjct: 79 TDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYI 138 Query: 129 AGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKN 188 AGW+R+QS EVY+A+ + + +L+GK+ A ++ +K S++ PLS+EARK GDGKN Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 Query: 189 PSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDP 248 PSLGIVDEYHAHET EIYDVL SGMVAR+ PLM +ITTAGF++ RPC++EY+Y S ILDP Sbjct: 199 PSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDP 258 Query: 249 DIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMR 308 + ENDDYFVMICEL+ DDIKDESNWIKANPIVATY EG+E +RS LKVAL+ PEKMR Sbjct: 259 SKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMR 318 Query: 309 SFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQ 368 +FLTKNMN WVD+KDNGYM M+KW+ C + D G +++G DLSMTTDLTSVG+V + Sbjct: 319 AFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDFSGATLWIGGDLSMTTDLTSVGWVGMD 378 Query: 369 D-GFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGE 411 D G F VGQHSFMP+AR EKMA DKV YDLW E G++T T GE Sbjct: 379 DEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGE 422 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 546 bits (1407), Expect = e-157, Method: Compositional matrix adjust. Identities = 255/404 (63%), Positives = 315/404 (77%), Gaps = 1/404 (0%) Query: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIEL 68 K+ K A+ERF +D + +D P+YFD E DFY ++++F HVEGILAG+ +EL Sbjct: 19 KINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGILAGESVEL 78 Query: 69 TDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKHRVFI 128 TDFQLF+AANI+GF KK NGARRFRK +IQLARKNAKSQFLA++A++ F EK R +I Sbjct: 79 TDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFLGDEKQRAYI 138 Query: 129 AGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKN 188 AGW+R+QS EVY+A+ + + +L+GK+ A ++ +K S++ PLS+EARK GDGKN Sbjct: 139 AGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 Query: 189 PSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDP 248 PSLGIVDEYHAHET EIYDVL SGMVAR+ PLM +ITTAGF++ RPC++EY+Y S ILDP Sbjct: 199 PSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDP 258 Query: 249 DIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMR 308 + ENDDYFVMICEL+ DDIKDESNWIKANPIVATY EG+E +RS LKVAL+ PEKMR Sbjct: 259 SKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMR 318 Query: 309 SFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQ 368 +FLTKNMN WVD+KDNGYM M+KW+ C + D G +++G DLSMTTDLTSVG+V + Sbjct: 319 AFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFDFSGATLWIGGDLSMTTDLTSVGWVGMD 378 Query: 369 D-GFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYTSGE 411 D G F VGQHSFMP+AR EKMA DKV YDLW E G++T T GE Sbjct: 379 DEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGE 422 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 541 bits (1393), Expect = e-156, Method: Compositional matrix adjust. Identities = 259/394 (65%), Positives = 305/394 (77%), Gaps = 2/394 (0%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A ERF D++R+ EDD PYYFD E + FY W+R F H +GILAGQPIELTDFQLFI N Sbjct: 30 ACERFLNDIERITEDDFPYYFDGEELYRFYRWARMFKHNKGILAGQPIELTDFQLFIVGN 89 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSDE 138 I+G+ +KENG RRFRKAYIQLARKNAKSQ LALIASYE F + E+ V+IAGW REQS Sbjct: 90 IFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIASYECFLSPEQSEVYIAGWGREQSSI 149 Query: 139 VYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYH 198 VY +L Q+ +LKGKYT + GR++ K+ SIIQPLS+EARK GDGKNPSL ++DEYH Sbjct: 150 VYNEVLAQVQACDLLKGKYTDSYGRIRHKKSGSIIQPLSKEARKTGDGKNPSLAVIDEYH 209 Query: 199 AHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYF 258 HETSEIYDVL SGMVAR++PL+ +ITTAGFN+ PC+ EYQY SK++DP EN++YF Sbjct: 210 THETSEIYDVLVSGMVARQNPLIVIITTAGFNLASPCYTEYQYVSKVIDPGSPIENEEYF 269 Query: 259 VMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRW 318 VMICELD +DDIKDE NW+KANPIVATY EGM LRS L+ AL+VPEKMRSFLTKNMN W Sbjct: 270 VMICELDKDDDIKDERNWVKANPIVATYEEGMNFLRSELQTALDVPEKMRSFLTKNMNIW 329 Query: 319 VDQKDNGYMKMTKWRACS-GEIPDLQGLPVYLGLDLSMTTDLTSV-GYVAVQDGFFYVGQ 376 VDQKDNGY+ + KWRAC+ E DL Y+G+DLSM DLTSV G V + DG FYV Sbjct: 330 VDQKDNGYLPLDKWRACAIKEQIDLDVRDCYVGIDLSMRIDLTSVSGIVPMDDGRFYVWS 389 Query: 377 HSFMPDARANEKMATDKVPYDLWREMGFITYTSG 410 HSF+P+ EK TDKVPYDLW + G+IT T G Sbjct: 390 HSFIPEDTLAEKRRTDKVPYDLWVKQGWITVTPG 423 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 289 bits (739), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 166/416 (39%), Positives = 236/416 (56%), Gaps = 16/416 (3%) Query: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIEL 68 K+ K A +RF D++R+ DD YY+D E +W H +G+L G+PI L Sbjct: 20 KINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHSKGVLEGKPIIL 79 Query: 69 TDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ-EKHRVF 127 + F+ NI + K+ RRFR A+IQ+ARKN KSQ A +A YEI V+ Sbjct: 80 NSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEAGMAGYEIGAKGYNAAEVY 139 Query: 128 IAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGK 187 G R+Q+ V++ +L + LK ++ +K K+NS I+ LS++A K GDGK Sbjct: 140 TLGVERDQAKIVFEEW--ELMASKPLKKRFKFTQKVIKHKKSNSFIKHLSKKAGKTGDGK 197 Query: 188 NPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMER-PCFKEYQYTSKIL 246 NP + ++DEYHAH S++YDV+ SGM+AR PL+ +ITTAG + E C+ EY IL Sbjct: 198 NPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAGEDYEETACYYEYLDCCSIL 257 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVP-- 304 D EN+ YFVMICEL+ EDD DE WIKANP++ TY EG+ES+R +A Sbjct: 258 DGTF--ENEKYFVMICELEDEDDPFDEKAWIKANPVLCTYEEGIESMRQNANLAKNTSNE 315 Query: 305 EKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIP--DLQGLPVYLGLDLSMTTDLTSV 362 EK FLTKN N +V + Y+ + W+AC I +G Y+G+DLS + DLTS+ Sbjct: 316 EKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKENITLEKFRGHDCYIGMDLSKSGDLTSI 375 Query: 363 GYV--AVQDGF--FYVGQHSFMPDARANEKMATDKVPYDLW--REMGFITYTSGEE 412 + + +G + + SF+P EKM TD VPY++W +E G++ T E Sbjct: 376 AFEFPYLDEGIRKYALFGKSFIPAEVVKEKMKTDNVPYNIWSSKEKGWLIKTEANE 431 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 236 bits (601), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 136/408 (33%), Positives = 234/408 (57%), Gaps = 24/408 (5%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A +R D++R Y FD E ++ ++ +G +AGQ ++L FQ FI + Sbjct: 26 ACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLRFTDGEIAGQQVKLFGFQDFIVGS 85 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALI----ASYEIFPTQEKHRVFIAGWSRE 134 I+G+ K G RRF+K+Y+QLARKNAKS + I A+++ +P + V+ + Sbjct: 86 IFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIGIKLAAFDKYPNAQ---VYCTATKMK 142 Query: 135 QSDEVYQAILEQLHHAPILKG--KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLG 192 Q+ V++ + + P L+ K + ++ I L R+ + DG +P G Sbjct: 143 QARIVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIMALGRDTGTI-DGFDPHGG 201 Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 I+DEYH+H+T+++ +L+ G V + L+++ITTAGFN+ PC+KE++Y +L+ ++ Sbjct: 202 IIDEYHSHKTNQMVKLLEDGSVNQAESLISIITTAGFNLNGPCYKEWEYCKNVLEGIVN- 260 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESL-RSALKVALEVPEKMRSFL 311 ND+YF+ I ++D EDDI D +NW+KANP+VA P+G+E+L R A + + + +++FL Sbjct: 261 -NDEYFIYIAQMDVEDDIWDPNNWLKANPLVAKLPKGLENLKRFAEESKQKGGDDLKNFL 319 Query: 312 TKNMNRWVDQKDNGYMKMTKWRACSGEIP--DLQGLPVYLGLDLSMTTDLTSVGYV---- 365 TK++N W + ++ Y+ + W+ + ++ + +G Y GLDLS DLTS+ + Sbjct: 320 TKSLNIWYEFSNDQYIGPSVWKVGASKLTLENFKGKTCYAGLDLSSGGDLTSLALIFPYE 379 Query: 366 -AVQDG----FFYVGQHSFMPDARANEKMATDKVPYDLWREMGFITYT 408 ++G +++ HSF+P R E + +D VPYD+W E G +T T Sbjct: 380 FEKENGEKVRKYFIHSHSFIPKRRVAEHIQSDDVPYDVWIENGLLTVT 427 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 180 bits (456), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/425 (30%), Positives = 211/425 (49%), Gaps = 28/425 (6%) Query: 9 KLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVE---GILAGQP 65 +++ +K A R D+ R+ ++D + + E D N +E + G+P Sbjct: 29 QIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAAD------PINFIEILPDVKTGKP 82 Query: 66 IELTDFQLFIAANIYGFYKK-ENGARRFRKAYIQLARKNAKSQFLALIASYEIF----PT 120 L FQ FI N+YG+ KK ++ RRFRKA I +ARKN K+ +A I YE P+ Sbjct: 83 YPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPS 142 Query: 121 QEKHRVFIAGWSREQSDEVYQAILEQLHHAPI----LKGKYTSANGRVKKYKTNSIIQPL 176 + ++F R Q+ + +QL ++ +K S I+ L Sbjct: 143 MSR-QLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDESYIRAL 201 Query: 177 SREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCF 236 SR+ + DG P +G++DE+ A +T+E+ ++L+SG +P + +I+TAG ++ P Sbjct: 202 SRDTGAV-DGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDLNVPMH 260 Query: 237 K-EYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV---ATYPEGMES 292 EY Y +KILD +I E YF + E D E++IKDESNWIK+NPI+ A + + M+ Sbjct: 261 TIEYPYITKILDGEITDEG--YFGYVAEQDNEEEIKDESNWIKSNPILEVEALHDKLMDY 318 Query: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLD 352 LR+ +V+LE E + L KN N W + Y+ W + PD V+LG+D Sbjct: 319 LRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQIDKPDTYKRRVWLGVD 377 Query: 353 LSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARA-NEKMATDKVPYDLWREMGFITYTSGE 411 + +DL ++ V + D ++Y+ SF+ K D V Y G+ T+ E Sbjct: 378 VGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGYCEITTLE 437 Query: 412 ELIIN 416 +I+ Sbjct: 438 SGVID 442 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 177 bits (450), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/354 (32%), Positives = 184/354 (51%), Gaps = 24/354 (6%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A +R F D+ + + + PY FD + ++ + H G LAGQ ++L +Q FI + Sbjct: 31 ACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQLLPHSSGELAGQKLKLEPWQSFIFCS 90 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKH-RVFIAGWSREQSD 137 I+G+ K++ RRFR+AYI++ARKN KS F A + Y E V+ + Q+ Sbjct: 91 IFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIYTFCADGENSAEVYCGATTMAQAK 150 Query: 138 EVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQP----LSREARKLGDGKNPSLGI 193 +V+ + P L+ ++ + T+S+ +P + A K GDG +P I Sbjct: 151 KVFTPARQMASRLPALRSRFDIS------VWTDSLTRPDGSVFAPMAGKPGDGDSPHCAI 204 Query: 194 VDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTE 253 +DEYH H+T +Y+ + GM AR PL +ITTAG ++E PC+ + + + ++ T Sbjct: 205 IDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSSLESPCYDKDKEVKEAIEG--ITC 262 Query: 254 NDDYFVMICELDPEDDIKDESNWIKANP---IVATYPEGMESLRSALKVALEVPEKMRSF 310 N+ F MI ELD DD D N IKANP + Y + +E L+VA +VP K+ +F Sbjct: 263 NERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYSDLVE----LLEVAKQVPRKVNAF 318 Query: 311 LTKNMNRWVDQKDNGYMKMTKWRACSG---EIPDLQGLPVYLGLDLSMTTDLTS 361 TK +N WV K + + M +W+A ++ D +GLDL+ D+ + Sbjct: 319 KTKRLNIWVSGK-SAFYNMEQWKAAEDKNLKLEDFANDTCNVGLDLAKKLDMNA 371 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 171 bits (432), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 Query: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Query: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 Query: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 Query: 409 SGEELIIN 416 + +I+ Sbjct: 417 QSDSGMID 424 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 171 bits (432), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 Query: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Query: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 Query: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 Query: 409 SGEELIIN 416 + +I+ Sbjct: 417 QSDSGMID 424 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 171 bits (432), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 Query: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Query: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 Query: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 Query: 409 SGEELIIN 416 + +I+ Sbjct: 417 QSDSGMID 424 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 171 bits (432), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 Query: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Query: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 Query: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 Query: 409 SGEELIIN 416 + +I+ Sbjct: 417 QSDSGMID 424 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 171 bits (432), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 Query: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Query: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 Query: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 Query: 409 SGEELIIN 416 + +I+ Sbjct: 417 QSDSGMID 424 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 171 bits (432), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/368 (27%), Positives = 200/368 (54%), Gaps = 19/368 (5%) Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 QP+ L +FQ FI ++YG+ + + R F KAYI +ARK KS ++ ++ E+ Q Sbjct: 63 TNQPMPLMEFQKFIVGSLYGWRRGQ--YRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 E---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKKYKTNSIIQ 174 ++++A + +Q+ +++ +Q++ + ++ K ++ ++S+ Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVLSSSVFA 180 Query: 175 PLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERP 234 PLS + DGK+P++ I+DE + E+Y +GM +++PL +++TAG N+ Sbjct: 181 PLSNNPDAV-DGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGDNLNSQ 239 Query: 235 CFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG---ME 291 ++EY+Y +IL+ ++ +N YFV E+D +++++DE+ WIKA P++ + ++ Sbjct: 240 MYQEYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTILQ 297 Query: 292 SLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGL 351 ++++ ++ LE L KN N W Q+++ + ++ W +P++ G VY+G+ Sbjct: 298 NVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKDVYIGV 357 Query: 352 DLSMTTDLTSVGYV-AVQDGFFYVGQHSFMPDARAN--EKMATDKVPYDLWREMGFITYT 408 DLS DLTSVG++ D ++ HSF+ R N +K DK+ Y+L E G T Sbjct: 358 DLSRLDDLTSVGFIFPNDDKKVFLHSHSFI-GLRTNLEQKSKRDKINYELAIERGEAETT 416 Query: 409 SGEELIIN 416 + +I+ Sbjct: 417 QSDSGMID 424 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 167 bits (423), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 112/367 (30%), Positives = 191/367 (52%), Gaps = 17/367 (4%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELT--DFQLFIA 76 A +RF D+DR ++DD PY FD ++ + H +G + +L +Q+FI Sbjct: 28 ACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMPHTKGKWSASKSKLVFEPWQVFIE 87 Query: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRVFIAGWSREQ 135 ANI+G+ K++ G RRFR+AY ++ RKN KS LA Y E V+ + +Q Sbjct: 88 ANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARGIYLFAADGESGAEVYSGATTEKQ 147 Query: 136 SDEVYQAILEQLHHAPILKGKY-TSANGRVKKYKTNSIIQPLSREARKLG---DGKNPSL 191 + EV++ H L+ ++ +G K +++ +S+ +G DG +P Sbjct: 148 AFEVFRPAWMMAHKLENLRNRFGIELSGNQKNPGPMFVMEDMSKFETVIGNPGDGASPHA 207 Query: 192 GIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDID 251 +VDEYH H+T + D + +GM AR PL+++ITTAG N+ PC ++ + +IL+ Sbjct: 208 ALVDEYHEHDTDALVDTMQTGMGAREQPLLSIITTAGSNLGGPCHEKRRDVIRILEG--Q 265 Query: 252 TENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRS 309 T ++ F +I +D +D D ++ IKANP V+ +P + L + L+ A K + Sbjct: 266 TIDETIFGIIYTIDEDDPWDDPASLIKANPNYGVSVFP---DFLLAQLQQAKRSASKQNA 322 Query: 310 FLTKNMNRWVDQKDNGYMKMTKWRACSGE--IPDLQGLPVYLGLDLSMTTDLTSVGYVAV 367 F TK++N+WV + +M M W+ + I D+ G ++ LDL+ D+ ++ + Sbjct: 323 FRTKHLNQWVGAR-TVWMNMLAWQRQKRDFTIADMAGCRCWMALDLASKKDVAALVMLFE 381 Query: 368 QDGFFYV 374 + G FY Sbjct: 382 KAGQFYC 388 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 164 bits (414), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 124/421 (29%), Positives = 211/421 (50%), Gaps = 43/421 (10%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQ--PIELTDFQLFIA 76 A +R D++ A+ + P+ FD + ++ + H +G A + PI L +QLF Sbjct: 27 ACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKGEWAFKRMPITLEPWQLFCI 86 Query: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKH--RVFIAGWSRE 134 ++G+ +K++G RRFR+AY ++ RKN KS A + Y +F ++ V+ + + Sbjct: 87 CVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGLY-MFACDDEFGAEVYSGATTEK 145 Query: 135 QSDEVYQ-AILEQLHHAPILKGKYTSANGR-VKKYKTNSIIQPLSREARKLGDGKNPSLG 192 Q+ EV++ A L P+ + + + + + + + +PL + GDG +PS Sbjct: 146 QAWEVFRPARLMAQRTEPLREAFGIEVHAQSMSRPEDGARFEPLIGDP---GDGASPSCA 202 Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 ++DEYH H+T +Y + +GM ARR PL+ ITTAG+N+E PC+ + + ++L+ + Sbjct: 203 LIDEYHEHQTDALYQTMQTGMGARRQPLIFGITTAGYNIEGPCYDKRREVIEMLEGIV-- 260 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRSF 310 ND+ F +I +D DD D + KANP ++ Y + L S + A+ P K+ F Sbjct: 261 PNDELFGIIYTIDDGDDWTDPAVLRKANPNMGISVYS---DYLLSQQRAAINNPRKVGVF 317 Query: 311 LTKNMNRWVDQKDNGYMKMTKWRAC---SGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAV 367 TK++N WV KD + + W+ C S + +G L DL+ DL ++ + Sbjct: 318 KTKHLNIWVAAKD-AFFNLVNWQKCEDRSLTLERFEGHTCILAFDLARKLDLNAMVRLFT 376 Query: 368 Q--DG---FFYVGQHSFMP----------DARANEKMATDKVPYDLWREMGFITYTSGEE 412 + DG ++ V F+P D+R E+ Y W E GFIT T G E Sbjct: 377 REIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAER-------YQKWVEGGFITVTDGAE 429 Query: 413 L 413 + Sbjct: 430 I 430 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 161 bits (407), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 123/396 (31%), Positives = 190/396 (47%), Gaps = 27/396 (6%) Query: 38 YFDAEAVVDFYEWSRQF-NHVEGILAGQPIELTDFQLFIAANIYGFY-KKENG--ARRFR 93 +FD + + ++ + F HV+G LAGQ +EL +++F+ AN+YG+Y K E G R R Sbjct: 45 WFDVDRANEMLDFVQSFIRHVKGPLAGQLMELELWEMFVFANMYGWYHKNEKGKTVRVIR 104 Query: 94 KAYIQLARKNAKSQFLALIASYEIFPTQE-KHRVFIAGWSREQSDEVYQAILEQLH---- 148 ++Y+Q+ +KN K+ A Y ++ E + A EQ+ + I + + Sbjct: 105 ESYVQVPKKNGKTIIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSEP 164 Query: 149 ---HAPILKGKYTSANGRVKKYKTNSI-----IQPLSREARKLGDGKNPSLGIVDEYHAH 200 H I KG + +G + +Y N I + L++ + L +GKNP + DE HA Sbjct: 165 LARHTQIYKGVNGTVSGAMYRYSINGIAYQNKFKVLTKNTKGL-EGKNPYFVLNDELHAQ 223 Query: 201 ETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 E ++YD L S ++R P+M I+TAG + Y+Y +L+ D D D FV Sbjct: 224 ENMDMYDNLKSAQISREQPMMLNISTAGKGASSVGMRVYKYAKLVLENDDD---DSLFVA 280 Query: 261 ICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVD 320 I E + D +D W NP + ME L K A + FL+K++N +V+ Sbjct: 281 IWEPNKNYDWEDRKVWKMVNPNIGV-SVTMEQLEIEFKKAKQSAHSKAEFLSKHLNVFVN 339 Query: 321 QKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLT--SVGYVAVQD---GFFYVG 375 DN + ++ DL G YLGLDLS TTDLT S+ + + D V Sbjct: 340 GADNYFEHDQVQHVLVKDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIKVK 399 Query: 376 QHSFMPDARANEKMATDKVPYDLWREMGFITYTSGE 411 Q F+P+ + K D VPY E GF T+ G+ Sbjct: 400 QMYFLPNENIDFKEKEDNVPYTDMVERGFATFCDGK 435 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 159 bits (402), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 122/414 (29%), Positives = 190/414 (45%), Gaps = 21/414 (5%) Query: 3 RKFASVKLRQAKSKNGAVERFFKDVDRLAED-DCPYYFDAEAVVDFYEWSRQFNHVEGIL 61 R S K+ K A +R D+ D + PY FD + + + H G L Sbjct: 15 RDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSSGDL 74 Query: 62 AGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ 121 GQ ++ +QLFI ++I+G+ K+ RRF++ YI++ RKN KS F A I Y Sbjct: 75 KGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYMFCADG 134 Query: 122 EKH-RVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTN-SIIQPLSRE 179 E V+ Q+ +V+ + P L+ ++ + K + + S+ P+ Sbjct: 135 ENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLTREDGSVFAPVVGN 194 Query: 180 ARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEY 239 GDG +PS I+DEYH H T +Y + +GM AR PL +ITTAG ++E PC+ + Sbjct: 195 P---GDGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCYDKD 251 Query: 240 QYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKV 299 + LD + N+ F MI ELD D+ +D N IKANP + E L L + Sbjct: 252 NEVKQCLDKML--PNERLFGMIYELDALDNWQDPCNLIKANPNLGV-SVFYEDLVEKLHL 308 Query: 300 ALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSG---EIPDLQGLPVYLGLDLSMT 356 A VP TK++N WV K + M W ++ + +G +LGLDL+ Sbjct: 309 AKTVPRMTNDIKTKHLNMWVSGK-TAFFNMDHWAKAEDKNLKLSNFKGEESHLGLDLAAK 367 Query: 357 TDLTSVGYVAVQD-----GFFYVGQHSFMPDARANE---KMATDKVPYDLWREM 402 DL + V ++ ++ VG ++P+ + K+A Y W M Sbjct: 368 LDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQKWVNM 421 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 152 bits (385), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 120/435 (27%), Positives = 212/435 (48%), Gaps = 36/435 (8%) Query: 2 LRKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFD---AEAVVDFYEWSRQFNHVE 58 +++ +L +K+ N AV+R +D+ R D +++D A V F E Sbjct: 5 IKRVLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFME--------- 52 Query: 59 GIL----AGQPIELTDFQLFIAANIYGFYKKENG-ARRFRKAYIQLARKNAKSQFLALIA 113 IL +G+P L FQ FI +IYG+ K++ RRF +I +ARKN KS ++ + Sbjct: 53 -ILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVI 111 Query: 114 SYEIFPTQE---KHRVFIAGWSREQSDEVYQAILEQLH----HAPILKGKYTSANGRVKK 166 YE + K +++ A R+Q+ V+ + ++L P +K + Sbjct: 112 LYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVN 171 Query: 167 YKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITT 226 S I+ SR+ L DG P + +VDEY +T+++ + L SG V S L +I+T Sbjct: 172 LDDGSTIRSFSRDT-GLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIIST 230 Query: 227 AGFNMERPCFKE-YQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPI--V 283 AGF+M P F++ Y Y K+L + E YF I E D ++ D ++WIK+NP+ V Sbjct: 231 AGFDMNVPMFQQNYPYAKKVLSGEEKAER--YFAFIAEQDNVQEVDDPNSWIKSNPLLDV 288 Query: 284 ATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACS-GEIPDL 342 T + + + + L KN N W ++ Y+ W+A + PD+ Sbjct: 289 DTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDI 348 Query: 343 QGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARA-NEKMATDKVPYDLWRE 401 +G ++G+D+ T+DL ++ ++ Q+G++++ ++F+ + K+ TD++ Y + Sbjct: 349 RGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQ 408 Query: 402 MGFITYTSGEELIIN 416 G +S E II+ Sbjct: 409 HGEGEISSLESGIID 423 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 149 bits (377), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 112/369 (30%), Positives = 184/369 (49%), Gaps = 33/369 (8%) Query: 64 QPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK 123 Q + L +QLF A +G+ +K+ G RRFR++Y ++ RKN KS A + +F ++ Sbjct: 80 QLVTLEPWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVG-IAMFTADDE 138 Query: 124 H--RVFIAGWSREQSDEVYQAILEQLHHAPIL---KGKYTSANGRVKKYKTNSIIQPLSR 178 V+ + Q+ EV++ + +P+L G +A + + + S +P+ Sbjct: 139 FGAEVYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQA-LNRPEDGSRFEPIIG 197 Query: 179 EARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKE 238 GDG +PS I DEYH H+T+ Y+ + +GM ARR PLM VITTAG N+E PC+ + Sbjct: 198 NP---GDGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGANIEGPCYDK 254 Query: 239 YQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSA 296 + ++L+ + +D+ F I +D +DD D KANP ++ Y E +ES + Sbjct: 255 RRQVIEMLEGTV--PDDELFGWIWTIDEDDDWTDPRVLAKANPNIGISVYQEYLESQQ-- 310 Query: 297 LKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRAC---SGEIPDLQGLPVYLGLDL 353 + A++ +F TK++N W K GY + W+AC S + +G L LD+ Sbjct: 311 -QRAIKSARFTNTFKTKHLNVWTSAK-AGYFNLEDWKACEDRSLSLEQFEGQDCVLALDM 368 Query: 354 SMTTDLTSVGYVAVQD-----GFFYVGQHSFMPDARA----NEKMATDKVPYDLWREMGF 404 + DL S+ + +D +F V ++P+ N +MA Y W GF Sbjct: 369 ARKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAER---YQAWVNHGF 425 Query: 405 ITYTSGEEL 413 + T G E+ Sbjct: 426 LIETDGAEI 434 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 149 bits (376), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 121/416 (29%), Positives = 193/416 (46%), Gaps = 32/416 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQ--PIELTDFQLFIA 76 A +R D+ Y FD + ++ + H +G A + PI L +QLF+ Sbjct: 33 ACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHTKGEWAFKRMPITLEPWQLFVI 92 Query: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQE-KHRVFIAGWSREQ 135 +G+ K + RRFR+ Y ++ RKN KS A +A Y E V+ + +Q Sbjct: 93 CCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGVALYCFACDNEFGAEVYSGATTEKQ 152 Query: 136 SDEVYQAILEQLHHAPILK---GKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLG 192 + EV++ P+L G +A+ + + + + +PL GDG +P Sbjct: 153 AWEVFRPARLMCKRTPMLTEAFGIEVNASN-MNRPEDGARFEPLIGNP---GDGSSPHCA 208 Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 +VDEYH H T +Y + +GM ARR PLM ITTAG+N+E PC+ + + ++L+ + Sbjct: 209 VVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSV-- 266 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRSF 310 ND+ F +I +D DD D KANP V+ Y E + S + K + F Sbjct: 267 PNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARL---ANVF 323 Query: 311 LTKNMNRWVDQKDNGYMKMTKWRAC---SGEIPDLQGLPVYLGLDLSMTTDLTSVG--YV 365 TK++N WV + + Y + W++C S + +G P L DL+ D+ S+ Y Sbjct: 324 KTKHLNIWVSAR-SAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYT 382 Query: 366 AVQDG---FFYVGQHSFMP-----DARANEKMATDKVPYDLWREMGFITYTSGEEL 413 DG ++ V ++P NE T + + W EMG +T T G E+ Sbjct: 383 REIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAER-FQKWVEMGVLTVTDGAEV 437 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 149 bits (376), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 119/415 (28%), Positives = 195/415 (46%), Gaps = 33/415 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILA--GQPIELTDFQLFIA 76 A +R D+ + D + FD EA H +G A GQ + L +Q F Sbjct: 32 ACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGEWAFKGQLVTLEPWQKFGL 91 Query: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIA-SYEIFPTQEKHRVFIAGWSREQ 135 +G+ K G RRFR++Y ++ RKN KS A + + + V+ + +Q Sbjct: 92 MATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQ 151 Query: 136 SDEVYQAILEQLHHAPIL---KGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLG 192 + EV++ + +P+L G +A+ + K S +P+ GDG +PS Sbjct: 152 AWEVFRPAQLMVKRSPMLIDSAGIEVNASN-MNKPADGSRFEPIIGNP---GDGASPSCA 207 Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 IVDEYH H+++ +Y+ + +GM ARR PLM +ITTAG N+E PCF + + ++L+ + Sbjct: 208 IVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTV-- 265 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRSF 310 +D+ F I +D DD D KANP ++ Y + +ES + + A++ +F Sbjct: 266 PDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQ---QRAIKSARFTNTF 322 Query: 311 LTKNMNRWVDQKDNGYMKMTKWRAC---SGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAV 367 TK++N W K GY + W++C S + +G L LD++ DL S+ + Sbjct: 323 KTKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFW 381 Query: 368 QD-----GFFYVGQHSFMPDARA----NEKMATDKVPYDLWREMGFITYTSGEEL 413 D +F V ++P+ N +MA Y W G + T G E+ Sbjct: 382 HDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAER---YQAWVNQGCLLETDGAEI 433 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 147 bits (371), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/414 (28%), Positives = 191/414 (46%), Gaps = 31/414 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILA--GQPIELTDFQLFIA 76 A +R D+ + D + FD EA H +G A Q + L +Q F Sbjct: 32 ACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGEWAFRKQLVTLEPWQKFGL 91 Query: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIA-SYEIFPTQEKHRVFIAGWSREQ 135 +G+ K G RRFR++Y ++ RKN KS A + + + V+ + +Q Sbjct: 92 MATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIGMFVLDDEFGAEVYAGATTEKQ 151 Query: 136 SDEVYQAILEQLHHAP--ILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGI 193 + EV++ + +P I+ + K + S +PL GDG +PS I Sbjct: 152 AWEVFRPARLMVKRSPELIVAADIEVNASNMNKPEDGSRFEPLIGNP---GDGASPSCSI 208 Query: 194 VDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTE 253 VDEYH H+++ +Y+ + +GM ARR PLM +ITTAG N+E PCF + + ++L+ + Sbjct: 209 VDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTV--P 266 Query: 254 NDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRSFL 311 +D+ F I +D DD D KANP ++ Y + +ES + + A++ +F Sbjct: 267 DDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVYQDYLESQQ---QRAIKSARFTNTFK 323 Query: 312 TKNMNRWVDQKDNGYMKMTKWRAC---SGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQ 368 TK++N W K GY + W++C S + +G L LD++ DL S+ + Sbjct: 324 TKHLNVWTSAK-AGYFNLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWH 382 Query: 369 D-----GFFYVGQHSFMPDARA----NEKMATDKVPYDLWREMGFITYTSGEEL 413 D +F V ++P+ N +MA Y W G + T G E+ Sbjct: 383 DIDGRRHYFCVAPRFWVPEETVRNTENRRMAER---YQAWVNQGCLLETDGAEI 433 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 144 bits (364), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 121/416 (29%), Positives = 192/416 (46%), Gaps = 32/416 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQP--IELTDFQLFIA 76 A +R D+ Y FD + ++ + H +G A + I L +QLFI Sbjct: 33 ACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLLPHTKGEWAFKRMLITLEPWQLFIV 92 Query: 77 ANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQE-KHRVFIAGWSREQ 135 +G+ +K RRFR+ Y ++ RKN KS A +A Y E V+ + +Q Sbjct: 93 CCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAGVALYCFTCDNEFGAEVYSGATTEKQ 152 Query: 136 SDEVYQAILEQLHHAPILK---GKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLG 192 + EV++ P+L G +A+ + + + + +PL GDG +P Sbjct: 153 AWEVFRPARLMCKRTPLLVEAFGIEVNASN-LNRPEDGARFEPLIGNP---GDGASPHCA 208 Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 IVDEYH H T +Y + +GM ARR PLM ITTAG+N+E PC+ + + ++L+ + Sbjct: 209 IVDEYHEHPTDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSV-- 266 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPI--VATYPEGMESLRSALKVALEVPEKMRSF 310 N++ F +I +D DD D KANP V+ Y + L S + A+ F Sbjct: 267 PNNELFGVIYTVDEGDDWTDPKVLEKANPNIGVSVY---RDFLLSQQQRAINNARHAGVF 323 Query: 311 LTKNMNRWVDQKDNGYMKMTKWRACSGEIPDL---QGLPVYLGLDLSMTTDLTSVGYVAV 367 TK++N WV + + + W+ C + L +G P L DL+ D+ S+ + Sbjct: 324 KTKHLNVWVAAR-TAFFNLVSWQNCEDKTLTLELFEGQPCVLAFDLARKLDMNSMARLFT 382 Query: 368 Q--DG---FFYVGQHSFMP-----DARANEKMATDKVPYDLWREMGFITYTSGEEL 413 + DG F+ V ++P NE T + + W EMGF+T T G E+ Sbjct: 383 REIDGKTHFYSVAPRFWVPYDTVYSVEKNEDRRTAE-RFQKWVEMGFLTVTDGAEV 437 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 139 bits (351), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 117/413 (28%), Positives = 200/413 (48%), Gaps = 32/413 (7%) Query: 19 AVERFFKDVDRLAEDDC-PYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAA 77 A +R D+ R+ +DD Y +D+E E+S ++ + +G+P E + +Q FI A Sbjct: 37 ACKRHIDDLRRIDKDDAFIYIYDSEQAKKIVEFS---TLLKDVTSGEPFEASPYQKFILA 93 Query: 78 NIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYE-IFPTQEKHR-VFIAGWSREQ 135 ++ G+ E RF+ +I +AR N K+Q LA A Y +F + + +R + ++ Sbjct: 94 SVQGWRNPETKGMRFKTIFISMARTNGKTQVLATYALYNFLFGSPKINRQLAVSSIDIAH 153 Query: 136 SDEVYQAI------LEQLHHAPILKGKYTSANGRVKKYKTNS-IIQPLSREARKLGDGKN 188 + ++ + L+ + K + N +V + K S +++ LS + D + Sbjct: 154 THNLFNYMRFNWIQLKDGVFKKLAKALDINDNSQVMEIKKQSAVMKKLSAQGSP-ADSDH 212 Query: 189 PSLGIVDEYH--AHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 + GIVDEYH + + + SGMV M I+TAG + P F++Y+ SK+L Sbjct: 213 YTTGIVDEYHLFGQKQRDFISSMTSGMVNNPLAQMFFISTAGVDPTVPMFEDYKRYSKML 272 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSAL-------KV 299 + + ++ V+I E D ED+ W K+NP++ +ES+R L + Sbjct: 273 ESGDWSSSEKDLVLIWEQDSEDEAYLIETWPKSNPLME-----IESMRKNLTEGMITERD 327 Query: 300 ALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDL 359 +L ++R F KNMN W + K N Y+ + + + D G V++G D S T D Sbjct: 328 SLNSQGRIRDFYVKNMNLWQNAKKNAYLPLDLVQDAIVDEFDYFGRDVFIGFDYSQTNDD 387 Query: 360 TSVGYVAVQDGF-FYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYT 408 TS+ +V G F++ QHS++P A+A K D + Y +E GF T T Sbjct: 388 TSLAFVFPHSGSKFHLYQHSWIPIAKAGSIEAKEQRDNIDYRAVQEKGFATIT 440 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 133 bits (335), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 131/431 (30%), Positives = 204/431 (47%), Gaps = 41/431 (9%) Query: 3 RKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEG--- 59 RK A +L QA +RFFKD++ D P +AE V+ E + F H +G Sbjct: 21 RKVACRELIQA------AKRFFKDLENPKYDFNPR--EAEFVIQIIE--KTFVHDQGERL 70 Query: 60 ---ILAGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYE 116 L G+P L +Q FI N+ GFY K RRF++A+I + RKN K++ +A +A Sbjct: 71 DGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAALAWAL 130 Query: 117 IF-PTQEKHRVFIAGWSREQSDEVYQAILEQLHHAP------ILKGKYTSANGRVKKYKT 169 Q +++I + +QS + ++ IL L IL N ++ Sbjct: 131 ALLERQSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNN--NQENSISGEFSD 188 Query: 170 NSI-IQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAG 228 SI I+ L+ K D N ++GI DE HA++T + Y+++ M A + LM ITTAG Sbjct: 189 GSIYIRALAANPDK-QDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITTAG 247 Query: 229 FNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIK-DESNWI---KANPIVA 284 +M C++ QY KILD + E YFV IC+ D +++ + D +N I KANP Sbjct: 248 DDMTSFCYQRLQYCKKILDETVTDEA--YFVFICKADEDENGEVDYTNPIEHEKANPNYG 305 Query: 285 TYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKW----RACSGEIP 340 + + AL+ A P++ + FL K++N + Y + ++ R I Sbjct: 306 VTIRPDDIMNDALQ-AQNDPQQRKDFLAKSLNIYTSPM-KAYFNIDEFKKSDRKYDWTIE 363 Query: 341 DLQGLPV--YLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDL 398 L L + + G DLS DLT+ +G H++ P A K D +P Sbjct: 364 QLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAEEDNIPLFG 423 Query: 399 WREMGFITYTS 409 WR+ G++T T+ Sbjct: 424 WRDDGWLTMTN 434 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 133 bits (335), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 130/431 (30%), Positives = 205/431 (47%), Gaps = 41/431 (9%) Query: 3 RKFASVKLRQAKSKNGAVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEG--- 59 RK A +L QA +RFFKD++ D P +AE V+ E + F H +G Sbjct: 21 RKVACRELIQA------AKRFFKDLENPKYDFNPR--EAEFVIQIIE--KTFVHDQGERL 70 Query: 60 ---ILAGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYE 116 L G+P L +Q FI N+ GFY K RRF++A+I + RKN K++ +A +A Sbjct: 71 DGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIAALAWAL 130 Query: 117 IF-PTQEKHRVFIAGWSREQSDEVYQAILEQLHHAP------ILKGKYTSANGRVKKYKT 169 Q +++I + +QS + ++ IL L IL N ++ Sbjct: 131 ALLERQSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNN--NQENSISGEFSD 188 Query: 170 NSI-IQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAG 228 SI I+ L+ K D N ++GI DE HA++T + Y+++ M A + LM ITTAG Sbjct: 189 GSIYIRALAANPDK-QDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITTAG 247 Query: 229 FNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIK-DESNWI---KANPIVA 284 +M C++ QY KILD + E YFV IC+ D +++ + D +N I KANP Sbjct: 248 DDMTSFCYQRLQYCKKILDETVTDEA--YFVFICKADEDENGEVDYTNPIEHEKANPNYG 305 Query: 285 TYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGE----IP 340 + + AL+ A P++ + FL K++N + Y + +++ + I Sbjct: 306 VTIRPDDIMNDALQ-AQNDPQQRKDFLAKSLNIYTSPM-KAYFNIDEFKKSDRKYDWTIE 363 Query: 341 DLQGLPV--YLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDL 398 L L + + G DLS DLT+ +G H++ P A K D +P Sbjct: 364 QLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAEEDNIPLFG 423 Query: 399 WREMGFITYTS 409 WR+ G++T T+ Sbjct: 424 WRDDGWLTMTN 434 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 121 bits (303), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 170/343 (49%), Gaps = 10/343 (2%) Query: 68 LTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRV 126 L +Q FI +++G+ KE RRF++A I + RKN K+ ++ +A+Y + E + Sbjct: 80 LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEI 139 Query: 127 FIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDG 186 + +Q+ ++ + +P L+ + + T S I P + ++ KL DG Sbjct: 140 HLLANVMKQARILFDESKAMIKASPKLRENFRPLRDEIHYDATISKIMPQASDSDKL-DG 198 Query: 187 KNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 N +GI DE H + ++ V+ + AR PL+ ITTAG+ ++ P + L Sbjct: 199 LNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTL 258 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEK 306 D I+ E Y+ + LD +DDI D SNWIKANP + + ++ ++ + A P++ Sbjct: 259 DRIIEDERTFYY--LASLDDDDDINDSSNWIKANPNLGVSID-LDEMKEEWEKAKRTPDE 315 Query: 307 MRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIP--DLQGLPVYLGLDLSMTTDLT-SVG 363 F+TK N + + + ++ + + I +L+G P +G DLS T D T + Sbjct: 316 RGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACA 375 Query: 364 YVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 A+ +G V HS++P + + + +K+PY W E G +T Sbjct: 376 TFALDNGKVAVLTHSWIPKHKV--EYSNEKIPYIEWEEDGLLT 416 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 120 bits (301), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 169/343 (49%), Gaps = 10/343 (2%) Query: 68 LTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRV 126 L +Q FI +++G+ KE RRF++A I + RKN K+ ++ +A+Y + E + Sbjct: 80 LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEI 139 Query: 127 FIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDG 186 + +Q+ ++ + +P L+ + + T S I P + ++ KL DG Sbjct: 140 HLLANVMKQARILFDESKAMIKASPKLRENFRPLRDEIHYDATISKIMPQASDSDKL-DG 198 Query: 187 KNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 N +GI DE H + ++ V+ + AR PL+ ITTAG+ ++ P + L Sbjct: 199 LNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTL 258 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEK 306 D I+ E Y+ + LD +DDI D SNWIKANP + + ++ ++ + A P + Sbjct: 259 DQIIEDERTFYY--LASLDDDDDINDSSNWIKANPNLGVSID-LDEMKEEWEKAKRTPAE 315 Query: 307 MRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIP--DLQGLPVYLGLDLSMTTDLT-SVG 363 F+TK N + + + ++ + + I +L+G P +G DLS T D T + Sbjct: 316 RGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPCTIGYDLSETEDFTAACA 375 Query: 364 YVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 A+ +G V HS++P + + + +K+PY W E G +T Sbjct: 376 TFALDNGKVAVLTHSWIPKHKV--EYSNEKIPYREWEEDGLLT 416 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 120 bits (300), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 10/343 (2%) Query: 68 LTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRV 126 L +Q FI +++G+ KE RRF++A I + RKN K+ ++ +A+Y + E + Sbjct: 80 LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEI 139 Query: 127 FIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDG 186 + +Q+ ++ + +P L + + + T S I P + ++ KL DG Sbjct: 140 HLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKL-DG 198 Query: 187 KNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 N +GI DE H + ++ V+ + AR PL+ ITTAG+ ++ P + L Sbjct: 199 LNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTL 258 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEK 306 D I+ E Y+ + LD +DDI D SNWIKANP + ++ ++ + A P + Sbjct: 259 DQIIEDERTFYY--LASLDDDDDINDSSNWIKANPNLGV-SINLDEMKEEWEKAKRTPAE 315 Query: 307 MRSFLTKNMNRWVDQKDNGYMKMTKWRACSG--EIPDLQGLPVYLGLDLSMTTDLT-SVG 363 F+TK N + + + ++ + + + +L+G P +G DLS T D T + Sbjct: 316 RGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375 Query: 364 YVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 A+ +G V HS++P + + + +K+PY W E G +T Sbjct: 376 TFALDNGKVAVLSHSWIPKHKV--EYSNEKIPYREWEEDGLLT 416 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 120 bits (300), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 10/343 (2%) Query: 68 LTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRV 126 L +Q FI +++G+ KE RRF++A I + RKN K+ ++ +A+Y + E + Sbjct: 80 LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEI 139 Query: 127 FIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDG 186 + +Q+ ++ + +P L + + + T S I P + ++ KL DG Sbjct: 140 HLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKL-DG 198 Query: 187 KNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 N +GI DE H + ++ V+ + AR PL+ ITTAG+ ++ P + L Sbjct: 199 LNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTL 258 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEK 306 D I+ E Y+ + LD +DDI D SNWIKANP + ++ ++ + A P + Sbjct: 259 DQIIEDERTFYY--LASLDDDDDINDSSNWIKANPNLGV-SINLDEMKEEWEKAKRTPAE 315 Query: 307 MRSFLTKNMNRWVDQKDNGYMKMTKWRACSG--EIPDLQGLPVYLGLDLSMTTDLT-SVG 363 F+TK N + + + ++ + + + +L+G P +G DLS T D T + Sbjct: 316 RGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375 Query: 364 YVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 A+ +G V HS++P + + + +K+PY W E G +T Sbjct: 376 TFALDNGKVAVLSHSWIPKHKV--EYSNEKIPYREWEEDGLLT 416 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 120 bits (300), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 168/343 (48%), Gaps = 10/343 (2%) Query: 68 LTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRV 126 L +Q FI +++G+ KE RRF++A I + RKN K+ ++ +A+Y + E + Sbjct: 80 LQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEI 139 Query: 127 FIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDG 186 + +Q+ ++ + +P L + + + T S I P + ++ KL DG Sbjct: 140 HLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKL-DG 198 Query: 187 KNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 N +GI DE H + ++ V+ + AR PL+ ITTAG+ ++ P + L Sbjct: 199 LNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTL 258 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEK 306 D I+ E Y+ + LD +DDI D SNWIKANP + ++ ++ + A P + Sbjct: 259 DQIIEDERTFYY--LASLDDDDDINDSSNWIKANPNLGV-SINLDEMKEEWEKAKRTPAE 315 Query: 307 MRSFLTKNMNRWVDQKDNGYMKMTKWRACSG--EIPDLQGLPVYLGLDLSMTTDLT-SVG 363 F+TK N + + + ++ + + + +L+G P +G DLS T D T + Sbjct: 316 RGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375 Query: 364 YVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 A+ +G V HS++P + + + +K+PY W E G +T Sbjct: 376 TFALDNGKVAVLSHSWIPKHKV--EYSNEKIPYREWEEDGLLT 416 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 117 bits (293), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 113/420 (26%), Positives = 187/420 (44%), Gaps = 27/420 (6%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R +D+ R D PY + EA F ++ +V+ + Q +E D+QLFI + Sbjct: 53 ACFRHLRDLQRQGNKDFPYVYSIEAFNRFLKFLSLVPNVDDL--SQKLEPMDWQLFIFSQ 110 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQF--LALIASYEI-FPTQEKHRVFIAGWSREQ 135 I+ ++ +N RF I +AR K+ + L SY I Q ++ + +Q Sbjct: 111 IFAWFDLDN-VPRFSNIIISIARSQGKTMIAGICLNFSYLIEIIGQSNQDFLVSSLTFDQ 169 Query: 136 SDEVYQ-------AILEQLHHAPILKGKYTSANGR-VKKYKTNSIIQPLSREARKLGDGK 187 + +++ I+E + + R +K + I +S E+ K D K Sbjct: 170 TMKLFTYVKSMMARIIENEPFKSLAEETQLQLYSREIKSLLDANTINTISFESGKF-DSK 228 Query: 188 NPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILD 247 + L + DE T E + SG V I+T+ + P +E + +I++ Sbjct: 229 HFKLAVADEVGELRTDEGISKITSGQVNTEGSRFIEISTSYQTPDVPFHQEQKKLIEIME 288 Query: 248 PDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALE---VP 304 D D DD +I D +++ W K+NP++ +PE E L L + + Sbjct: 289 RDFDRSGDDQLCLIWSQDNLEEVFKPETWAKSNPLL-NHPELKEGLMKGLLSERDKKLLM 347 Query: 305 EKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGY 364 K+ F KNMN W+ N ++ +T D++G VY+GLD SM +D T++G+ Sbjct: 348 GKLADFQVKNMNCWLLADSNSFLDLTDIENAVIPEFDIRGKRVYVGLDASMFSDNTAIGF 407 Query: 365 V---AVQDGF--FYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEELIIN 416 V +DG ++V QHSF+P +A KM D V Y E G+ T TS + +IN Sbjct: 408 VYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEEKGYCTITSHPQGLIN 467 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 113 bits (283), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 99/419 (23%), Positives = 190/419 (45%), Gaps = 26/419 (6%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R +D+ R DD PY +D ++R +V+ G+P +L +Q FI Sbjct: 52 ACFRHLRDLQRQGNDDFPYTYDTAEADKLLRFARICPNVD---TGEPTQLMPWQKFILCM 108 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ---EKHRVFIAGWSREQ 135 ++G ++ NG +RF +A + + R K+ +A++ +Y F + +Q Sbjct: 109 LFG-WRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQDYLVTSIKFKQ 167 Query: 136 SDEVY---QAILEQLHHAPILKGKYTSA-----NGRVKKYKTNSIIQPLSREARKLGDGK 187 ++++ +++++Q+ K + +V N+I++ +S E+ + D Sbjct: 168 TNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSDQVIMKANNNILRAISAESGQY-DSF 226 Query: 188 NPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILD 247 + + I DE ET + SG V + I+TA N P ++ + ++ Sbjct: 227 HFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAME 286 Query: 248 PDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSAL--KVALEVPE 305 D + E D Y ++ D +++ W+K+NP++ E ++ L + + + Sbjct: 287 DDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSG 346 Query: 306 KMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYV 365 + F KNMN W+ N ++ + + D++G VY+GLD SM +D T++G+V Sbjct: 347 NLSDFQVKNMNCWLLADSNSFLDLKDIENAVIDDFDIKGKRVYVGLDASMFSDNTALGFV 406 Query: 366 ---AVQDGF--FYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEELIIN 416 +DG +++ QHSF+P +A K+ D + Y GF T TS + +IN Sbjct: 407 YPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGINYRDLETKGFCTITSHPQGLIN 465 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 112 bits (279), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/420 (24%), Positives = 190/420 (45%), Gaps = 28/420 (6%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R +D+ R DD PY +D + ++R +V+ G+P +L +Q FI Sbjct: 52 ACFRHLRDLQRQGNDDFPYSYDTDEAARLLRFARICPNVD---TGEPTKLMAWQKFILCM 108 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ---EKHRVFIAGWSREQ 135 ++G ++ NG +RF +A + + R K+ +A++ +Y F + + +Q Sbjct: 109 LFG-WRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESLGLSNQDYLVTSINFKQ 167 Query: 136 SDEVY---QAILEQLHHAPILKGKYTSA-----NGRVKKYKTNSIIQPLSREARKLGDGK 187 ++++ +++++Q+ K + +V N++++ +S E+ + D Sbjct: 168 TNKLLGYIKSMMKQIIQNEPFKSLANETELGLHSDQVIMKANNNVLRAISAESGQY-DSF 226 Query: 188 NPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILD 247 + + I DE ET + + SG V + I+TA N P ++ + + ++ Sbjct: 227 HFTTAIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQRIMQQAME 286 Query: 248 PDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALE---VP 304 D + D Y ++ D +++ W K+NP++ E E+L L + + Sbjct: 287 DDDSRDADTYLCLVWSQDNLEEVFKPETWAKSNPLLDLEQE-RENLMKGLMDKRDSDLLS 345 Query: 305 EKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGY 364 + F KNMN W+ N ++ + D +G VY+GLD SM +D T++G+ Sbjct: 346 GNIADFQVKNMNCWLLADSNSFLDLKDIENAVIPEFDRRGKRVYVGLDASMFSDNTAIGF 405 Query: 365 V---AVQDGF--FYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEELIIN 416 V +DG ++V QHSF+P +A KM D V Y GF T TS + +IN Sbjct: 406 VYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEAKGFCTITSHPQGLIN 465 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 104 bits (260), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/419 (22%), Positives = 193/419 (46%), Gaps = 26/419 (6%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R +D+ R+ +D P+ ++ + V ++S+ +V+ + +P +L ++Q F+ + Sbjct: 62 ACFRHLQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNVDTM---EPTKLMEWQKFMLSL 118 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ---EKHRVFIAGWSREQ 135 + G+ KE G +RF +A I + R K+ LA++ +Y F ++ + +Q Sbjct: 119 LIGWRNKE-GGKRFSRAIISVGRGQGKTYMLAILMAYSFFVESRGLSNQDFLVSSINAKQ 177 Query: 136 SDEVYQAILEQLHHAPIL--------KGKYTSANGRVKKYKTNSIIQPLSREARKLGDGK 187 + ++Y + ++ + K + ++ N++I+P+S EA + D Sbjct: 178 TGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQY-DSY 236 Query: 188 NPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILD 247 + + I DE ++ E + SG V + I+TA + P ++ + + ++ Sbjct: 237 HFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQAME 296 Query: 248 PDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSAL--KVALEVPE 305 D + D Y +I D D+ W+K+NP++ E ++ L + + Sbjct: 297 QDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDVLTG 356 Query: 306 KMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYV 365 + F KN+N W+ + Y+ + ++ G Y+G+D SM++D T+V +V Sbjct: 357 AVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIYGQRCYVGVDYSMSSDNTAVAFV 416 Query: 366 ---AVQDGF--FYVGQHSFMPDARANEKMATDKVPYDLWREM---GFITYTSGEELIIN 416 ++G ++V QHSF+P A A +K +RE+ GF T TS ++ +IN Sbjct: 417 YPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYRELETKGFCTITSHQQGLIN 475 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 100 bits (249), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 167/381 (43%), Gaps = 28/381 (7%) Query: 41 AEAVVDFYEWSRQFNHV-EGILAGQPIELTDFQLFIAANIYGFYKKENGARRFRKAYIQL 99 E V+ F E +F V EG L GQP+ L FQ I Y G A + + Sbjct: 4 GERVIAFIE---RFCIVPEGKLIGQPMRLDTFQ---KEFILAVYDNPAGTD---MAILSI 54 Query: 100 ARKNAKSQFLA-LIASYEIFPTQEKHRVFIAG-WSREQSDEVYQAILEQLHHAPILKG-- 155 ARKN K+ +A ++ ++ + P ++ ++G SREQ+ V+ ++ ++ P L+ Sbjct: 55 ARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIV 114 Query: 156 KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHA--HETSEIYDVLDSGM 213 T + ++ N + LS E K G +P L I+DE + D + + Sbjct: 115 HITPSGKKLIGLPCNVEYKALSAEG-KTTHGLSPILAILDETGQVRGPQDDFIDAITTAQ 173 Query: 214 VARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDE 273 A +PL+ VI+T N + S +D + +++ + E + DI Sbjct: 174 GAHENPLLIVISTQAAN-------DADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKR 226 Query: 274 SNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWR 333 +W+ ANP + T+ + R A K A +P +F N+N+ V + ++ + W Sbjct: 227 ESWLAANPALGTFRSEKDMARQAEK-AGRMPSFENTFRNLNLNQRVSTV-SPFISRSVWE 284 Query: 334 ACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVA-VQDGFFYVGQHSFMPDARANEKMATD 392 C GE+P Y GLDLS DLT++ DG + V + P E+ TD Sbjct: 285 LC-GEMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEERTKTD 343 Query: 393 KVPYDLWREMGFITYTSGEEL 413 + PYD+W G + T G + Sbjct: 344 RAPYDVWVREGLLRTTPGASV 364 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 100 bits (249), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 30/382 (7%) Query: 41 AEAVVDFYEWSRQFNHV-EGILAGQPIELTDFQL-FIAANIYGFYKKENGARRFRKAYIQ 98 E V+ F E +F V EG L GQP+ L FQ FI A Y G A + Sbjct: 4 GERVIAFIE---RFCIVPEGKLIGQPMRLDPFQKDFILA----VYDNPAGTD---MAILS 53 Query: 99 LARKNAKSQFLA-LIASYEIFPTQEKHRVFIAG-WSREQSDEVYQAILEQLHHAPILKG- 155 +ARKN K+ +A ++ ++ + P ++ ++G SREQ+ V+ ++ ++ P L+ Sbjct: 54 IARKNGKTGLIAGILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEI 113 Query: 156 -KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHA--HETSEIYDVLDSG 212 T + ++ N + LS E K G +P L I+DE + D + + Sbjct: 114 VHITPSGKKLIGLPCNVEYKALSAEG-KTTHGLSPILAILDETGQVRGPQDDFIDAITTA 172 Query: 213 MVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKD 272 A +PL+ VI+T N + S +D + +++ + E + DI Sbjct: 173 QGAHENPLLIVISTQAAN-------DADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISK 225 Query: 273 ESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKW 332 +W+ ANP + T+ + R A K A +P +F N+N+ V + ++ + W Sbjct: 226 RESWLAANPALGTFRSEKDMARQAEK-AGRMPSFENTFRNLNLNQRVSTV-SPFISRSVW 283 Query: 333 RACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVA-VQDGFFYVGQHSFMPDARANEKMAT 391 C GE+P Y GLDLS DLT++ DG + V + P E+ T Sbjct: 284 ELC-GEMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEERTKT 342 Query: 392 DKVPYDLWREMGFITYTSGEEL 413 D+ PYD+W G + T G + Sbjct: 343 DRAPYDVWVREGLLRTTPGASV 364 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/424 (23%), Positives = 190/424 (44%), Gaps = 33/424 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R +D+ R+ +D PY + + + + + + +V+ G+P EL +Q FI Sbjct: 70 AAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD---TGEPTELMPWQKFIMCM 126 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYE-IFPTQ--EKHRVFIAGWSREQ 135 + G ++ G +RF A I ++R K+ LA++ Y +F + ++ + +Q Sbjct: 127 LIG-WRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQ 185 Query: 136 SDEVYQAILEQLHHAPILKGKYTSA-----------NGRVKKYKTNSIIQPLSREARKLG 184 + +++ + L ++ T A N V K N+ I+ +S EA + Sbjct: 186 TSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQY- 244 Query: 185 DGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSK 244 D + + I DE E + SG V ++ I+T+ + P K+ + + Sbjct: 245 DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQE 304 Query: 245 ILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSAL--KVALE 302 ++ D D E D ++ D + + W+K+NP++ + L+ + + + Sbjct: 305 AMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDL 364 Query: 303 VPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPD--LQGLPVYLGLDLSMTTDLT 360 + + F TKN+N W+ Q + Y+ + IP+ + G Y+G+D SM +D T Sbjct: 365 LQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAI--IPEFSIHGQRCYIGIDYSMMSDNT 422 Query: 361 SVGYV---AVQDG--FFYVGQHSFMPDARA---NEKMATDKVPYDLWREMGFITYTSGEE 412 ++ +V +G ++V QHSF+P RA + K D + Y + GF T TS ++ Sbjct: 423 AIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQ 482 Query: 413 LIIN 416 +IN Sbjct: 483 GLIN 486 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 98.6 bits (244), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 164/358 (45%), Gaps = 41/358 (11%) Query: 80 YGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKH-RVFIAGWSREQSDE 138 +G YK RR+ A+I+LARKN K++ LA I Y + E+ ++ ++Q+ Sbjct: 72 FGCYK-----RRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAAL 126 Query: 139 VYQAILEQLHHAPIL--KGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDE 196 + + + +PIL + K R+ KTNS ++ +A K G NPS DE Sbjct: 127 AFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADE 185 Query: 197 YHAHETSEIYDVLDSGMV--ARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTEN 254 A + ++D L +GM AR PLM TTAG + E +++ ++++ D +N Sbjct: 186 ILAWQDGGMWDSLRTGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVME---DPDN 242 Query: 255 DDY---FVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFL 311 D+ FV + E+D +E W ANP + + E++R A P +F Sbjct: 243 PDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFL-SWEAMRKQAAEARNNPIAEMAFR 301 Query: 312 TKNMNRWVDQKDNGYMKMTKWRACSGEI----PDL----QGLPVYLGLDLSMTTDLTSVG 363 +N+W + +M+M W C G + DL G + GLDL+ DL S+ Sbjct: 302 QFKLNQWQNSTIR-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 Query: 364 YVAVQ-DGFFYVGQHSFMPDA------RANE-KMATDKVPYDLWREMGFITYTSGEEL 413 Y+ Q DG + ++P++ R N+ + A + VP G++ T G+ L Sbjct: 361 YLFPQSDGSVDLLWRHWIPESALAKLDRLNDGRFAKEFVP------GGWLKVTEGDVL 412 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 150/312 (48%), Gaps = 10/312 (3%) Query: 99 LARKNAKSQFLALIASYEIFPTQEK-HRVFIAGWSREQSDEVYQAILEQLHHAPILKGKY 157 + RKN K+ ++ +A+Y + E + + +Q+ ++ + +P L+ + Sbjct: 1 MGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENF 60 Query: 158 TSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARR 217 + T S I P + ++ KL DG N +GI DE H + ++ V+ + AR Sbjct: 61 RPLRDEIHYDATISKIMPQASDSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARL 119 Query: 218 SPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWI 277 PL+ ITTAG+ ++ P + LD I+ E Y+ + LD +DDI D SNWI Sbjct: 120 QPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYY--LASLDDDDDINDSSNWI 177 Query: 278 KANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSG 337 KANP + + + ++ + A P++ F+TK N + + + ++ + + Sbjct: 178 KANPNLGVSID-LAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNND 236 Query: 338 EIP--DLQGLPVYLGLDLSMTTDLT-SVGYVAVQDGFFYVGQHSFMPDARANEKMATDKV 394 I +L+G P +G DLS T D T + A+ +G V HS++P + + + +K+ Sbjct: 237 IISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV--EYSNEKI 294 Query: 395 PYDLWREMGFIT 406 PY W E G +T Sbjct: 295 PYIEWEEDGLLT 306 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 97.8 bits (242), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/424 (23%), Positives = 189/424 (44%), Gaps = 33/424 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R +D+ R+ +D PY + + + + + + +V+ G+P EL +Q FI Sbjct: 73 AAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD---TGEPTELMPWQKFIMCM 129 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYE-IFPTQ--EKHRVFIAGWSREQ 135 + G+ E G +RF A I ++R K+ LA++ Y +F + ++ + +Q Sbjct: 130 LIGWRNSE-GGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQ 188 Query: 136 SDEVYQAILEQLHHAPILKGKYTSA-----------NGRVKKYKTNSIIQPLSREARKLG 184 + +++ + L ++ T A N V K N+ I+ +S EA + Sbjct: 189 TSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQY- 247 Query: 185 DGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSK 244 D + + I DE E + SG V + I+T+ + P K+ + + Sbjct: 248 DSFHFTTAIFDEIGEVTNREKISKIVSGQVMVENHQFVQISTSYPDPSVPFRKDQKTLQE 307 Query: 245 ILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSAL--KVALE 302 ++ D D E D ++ D + + W+K+NP++ + L+ + + + Sbjct: 308 AMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDL 367 Query: 303 VPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPD--LQGLPVYLGLDLSMTTDLT 360 + + F TKN+N W+ Q + Y+ + IP+ + G Y+G+D SM +D T Sbjct: 368 LQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAI--IPEFSIHGQRCYIGIDYSMMSDNT 425 Query: 361 SVGYV---AVQDG--FFYVGQHSFMPDARA---NEKMATDKVPYDLWREMGFITYTSGEE 412 ++ +V +G ++V QHSF+P RA + K D + Y + GF T TS ++ Sbjct: 426 AIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQ 485 Query: 413 LIIN 416 +IN Sbjct: 486 GLIN 489 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 97.4 bits (241), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/413 (22%), Positives = 186/413 (45%), Gaps = 26/413 (6%) Query: 22 RFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAANIYG 81 R D+ R + D PY++D + +++ +V+ G+P +L ++Q F A ++G Sbjct: 55 RHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD---TGEPTKLMEWQEFTFALMFG 111 Query: 82 FYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ---EKHRVFIAGWSREQSDE 138 + K+N +RF + +AR K+ +A++ Y +A + +Q+ + Sbjct: 112 WRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMK 170 Query: 139 VYQAILEQLHHAPILKGKYTSAN--------GRVKKYKTNSIIQPLSREARKLGDGKNPS 190 ++ + + ++ + AN ++ K N++++ +S EA + D + Sbjct: 171 LFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQY-DSYHFR 229 Query: 191 LGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDI 250 I DE ++ E + SG V + I+T+ + P ++ + + ++ D Sbjct: 230 TAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDW 289 Query: 251 DTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALE---VPEKM 307 + D Y +I D D+ W+K+NP++ P+ ++L L + + + Sbjct: 290 KRDADSYLGLIWSQDSLDETYKPETWVKSNPLL-DLPDQRDNLLKGLTDKRDSDLLTGNI 348 Query: 308 RSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYV-A 366 F TKN+N W+ Q + Y+ + ++ G V++G D SM +D T++ +V Sbjct: 349 SDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYP 408 Query: 367 VQDGFFYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEELIIN 416 DG F++ QHSF+P +A K D + Y + E + T T+ + IIN Sbjct: 409 YDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIIN 459 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 94.4 bits (233), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 94/385 (24%), Positives = 162/385 (42%), Gaps = 27/385 (7%) Query: 30 LAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAANIYGFYKKENGA 89 L+ DD YFD + ++ +S ++ L +++ FIA I+ Y KE+ Sbjct: 37 LSRDDI--YFDETQIENYISFSEKWY----------FPLDNWEKFIAPFIF-LYFKEDDE 83 Query: 90 RRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKHRVFIAGWSREQSDEVYQAILEQL 147 + + +I L R K+ F++ +++Y I P + V + S +Q+ ++ + + Sbjct: 84 LFYEEFFITLGRGGGKNGFISTLSNYFISPLHGINNYDVSVVANSEDQAKVSFKEVFNTI 143 Query: 148 HHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYD 207 P L+G + + ++ TNS+ + + A K DG I DE H +E +I D Sbjct: 144 DGNPKLEGSFDAWKAQIIGKATNSVFKFQTSNA-KTKDGGREGCVIYDETHEYEDRQIID 202 Query: 208 VLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPE 267 V G+ +P I T GF K + + IL + ND F IC+LD Sbjct: 203 VFSGGLGKVANPREFFIGTNGFVRAGFYDKLEERSKAILSGE--NLNDRMFPFICKLDDP 260 Query: 268 DDIKDESNWIKAN-----PIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQK 322 ++K+E+ W KAN P+ + +R + P +F+TK MN Sbjct: 261 AEVKNEAMWEKANPAFEKPLSPRSKRLLNKVRKQYEALTNNPSGREAFMTKRMNLPEVDL 320 Query: 323 DNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYV-AVQDGFFYVGQHSFMP 381 + A + E+P+LQ D + D +VG + V D + + HSF Sbjct: 321 EKVVAPWEDILATNREMPELQNRACIGAFDYASVKDFAAVGLLFRVGDDYIW-KTHSFAR 379 Query: 382 DARANEKMATDKVPYDLWREMGFIT 406 + +A K P W + G +T Sbjct: 380 KGYLD--IANLKPPIKEWEKQGLLT 402 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 94.4 bits (233), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/421 (22%), Positives = 185/421 (43%), Gaps = 26/421 (6%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R D+ R+ DD PY + ++ V +SR + + + I+ +Q FI + Sbjct: 57 ACIRHLNDLLRIGNDDFPYQYSSDMVNAIEYFSRLLPNPDD--TSKKIQPFKWQSFILDS 114 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFP---TQEKHRVFIAGWSREQ 135 + G+ +NG R F + I +AR+ K+ +++ ++ F + +A + E Sbjct: 115 LIGWRTVDNGTR-FTTSNISIARQQGKTWLASILINFYYFVVCWNATSQDLLVASYDSEH 173 Query: 136 SDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLG-------DGKN 188 + +++ + Q L A R + +T +I ++ + G D + Sbjct: 174 ATKLFNDVSLQAKTILSLPEFADDARERGVEAQTTQVIAKNTKNTIRKGTSQGGGFDSFH 233 Query: 189 PSLGIVDEYHAHETS--EIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 ++ + DE + E + SG ++ + I+TA +++ + T + Sbjct: 234 NAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAI 293 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEG-MESLRSALKVALEVPE 305 + D + D+ F +I D ED++ + W K+NP + P+ ++L++AL E Sbjct: 294 EHDAVRDADNVFQVIYSQDSEDEVFEPETWAKSNPNLLELPKSKRDNLQNALNQDRNDNE 353 Query: 306 K---MRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSV 362 + + +F+ K++N W + N Y+ + + + D+ G V++G D S T D TS Sbjct: 354 REGTLETFVNKSLNLWSRRFQNSYLSLDNIQRSIIDRFDVNGRDVFIGFDGSQTNDNTSF 413 Query: 363 G----YVAVQDGFFYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEELII 415 G Y F+V QHSF+P A+A K D + Y ++ GF+ T+ +I Sbjct: 414 GFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVI 473 Query: 416 N 416 N Sbjct: 474 N 474 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 92.8 bits (229), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 97/424 (22%), Positives = 184/424 (43%), Gaps = 32/424 (7%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 A R D+ R+ DD PY ++++ V +SR + + + I+ +Q FI + Sbjct: 56 ACIRHLNDLLRIGNDDFPYQYNSDMVNAIEYFSRLLPNPDD--TSKKIQPFKWQSFILDS 113 Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFP---TQEKHRVFIAGWSREQ 135 + G+ +NG R F + I +AR+ K+ +++ ++ F + +A + E Sbjct: 114 LIGWRTIDNGTR-FTTSNISIARQQGKTWLASILINFYYFVVCWNATSQDLLVASYDSEH 172 Query: 136 SDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLG-------DGKN 188 + +++ + Q L A R + +T +I ++ + G D + Sbjct: 173 ATKLFNDVSLQAKTILSLPDFADDARERGVEAQTTQVIAKNTKNTIRKGTSQGGGFDSFH 232 Query: 189 PSLGIVDEYHAHE--TSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKIL 246 ++ + DE +E + SG ++ + I+TA +++ + T + Sbjct: 233 NAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAI 292 Query: 247 DPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVAL----- 301 + D + D+ F +I D ED++ + W K+NP + E +S R L+ AL Sbjct: 293 EHDAVRDADNVFQVIYAQDSEDEVFEPETWAKSNPNLL---ELQKSKRDNLQKALNQDRN 349 Query: 302 --EVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDL 359 E + +F+ K++N W + N Y+ + + + D+ G V++G D S T D Sbjct: 350 DNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQRSIIDHFDVNGRDVFIGFDGSQTNDN 409 Query: 360 TSVG----YVAVQDGFFYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEE 412 TS G Y F+V QHSF+P A+A K D + Y ++ GF+ T+ Sbjct: 410 TSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLAS 469 Query: 413 LIIN 416 +IN Sbjct: 470 GVIN 473 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 86.7 bits (213), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 110/440 (25%), Positives = 193/440 (43%), Gaps = 56/440 (12%) Query: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEG------ILAGQPIELTDFQ 72 A +RF D++ D + FD V+ E + HV+G P+ L +Q Sbjct: 31 AAQRFLDDLESDKWDFKHHQFDF--VIGLIEGT--IVHVQGENKEGKSFKDTPMYLQPWQ 86 Query: 73 LFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLA-LIASYEIFPTQEKHRVFIAGW 131 F+ N++GF++K RRF +A I L RK K+ F A L + I + +I Sbjct: 87 KFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVAN 146 Query: 132 SREQSDEVYQAI---LEQLHHAPILKGKYTSANGRVKKYKTN-----SIIQPLSREARKL 183 S +Q+ E + + +E++ + +K N + + I ++ + KL Sbjct: 147 SLKQTQESFGFLTYNVEKIRND--VKKMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDKL 204 Query: 184 GDGKNPSLGIVDEYHAHETS--EIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQY 241 D N + I+DE H+ + + + Y ++ + A R+ L+ I+TAG + Sbjct: 205 -DSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQRVTT 263 Query: 242 TSKILDPDI-DTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKV- 299 K+L I D D YF+ +C + +D+ + N + PE + S+ +L V Sbjct: 264 LKKVLSGTIKDKAYDSYFIFLCTAE-QDEKGNIINPVTREITTIDDPEVLASVTPSLDVT 322 Query: 300 ------------ALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGE----IPDLQ 343 AL P+ FL K++N + + D Y + ++R + + + +L Sbjct: 323 VTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMD-AYFDIDEFRFSNKQHSWTMEELS 381 Query: 344 GLPV--YLGLDLSMTTDLTSVGYVAVQDGFFYVGQ-------HSFMPDARANEKMATDKV 394 LP+ Y G DLS DLT+ A+ + Y G+ H+F P +RA EK D + Sbjct: 382 KLPITWYGGADLSKMHDLTAS---ALYGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDI 438 Query: 395 PYDLWREMGFITYTSGEELI 414 P W+E G+ T ++ E ++ Sbjct: 439 PLFEWQEEGWATLSNTETVL 458 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 83.6 bits (205), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 13/322 (4%) Query: 67 ELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKH 124 +L +FQ FI + ++ Y + N ++K I + R K+ ++ I +Y + P + + Sbjct: 63 KLENFQKFIISFVFLRYSETN-RNVYKKILIMMGRGGGKNGLISGIIAYLLSPFHGIKNY 121 Query: 125 RVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLG 184 V + S +Q+ + I + P LK Y + +K TNS+++ + Sbjct: 122 NVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIHTNSVMRFRTSNG-NTK 180 Query: 185 DGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSK 244 DG + + DE H +E+++ V SG+ ++ I T G+ E K Sbjct: 181 DGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDKAKK 240 Query: 245 ILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPI----VATYPEGM-ESLRSALKV 299 +L + + F IC++D E ++ D+ W KANP+ ++ Y + + + + + Sbjct: 241 VLSGN--ARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHEPMSDYAQELFDMVCEQYEE 298 Query: 300 ALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDL 359 +E P F+TK M+ V + + A E+PD++G GLD + D Sbjct: 299 MVEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDF 358 Query: 360 TSVGYVAVQDGFFYVG-QHSFM 380 +VG + ++G YV HSF+ Sbjct: 359 AAVG-LLFKNGADYVWLSHSFV 379 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 11/321 (3%) Query: 67 ELTDFQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKH 124 +L +FQ FI + ++ Y + N ++K I + R K+ ++ I +Y I P + + Sbjct: 63 KLENFQKFIISFVFLRYSETN-RNVYKKILIMMGRGGGKNGLISGIIAYLISPFHGIKNY 121 Query: 125 RVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLG 184 V + S +Q+ + I + P LK Y + +K TNS+++ + Sbjct: 122 NVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKSIHTNSVMRFRTSNG-NTK 180 Query: 185 DGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSK 244 DG + + DE H +E+++ V SG+ ++ I T G+ E K Sbjct: 181 DGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDKAKK 240 Query: 245 ILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPI----VATYPEGM-ESLRSALKV 299 +L + F IC++D E ++ D+ W KANP+ ++ Y + + + + + Sbjct: 241 VLSGA--ARWNSMFPFICKIDEEHEVDDKEKWQKANPMFHQPMSDYAQELFDMVCEQYEE 298 Query: 300 ALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDL 359 +E P F+TK M+ V + + A E+PD++G GLD + D Sbjct: 299 MIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDF 358 Query: 360 TSVGYVAVQDGFFYVGQHSFM 380 +VG + + HSF+ Sbjct: 359 AAVGLLFKDRDDYVWLSHSFV 379 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 80.1 bits (196), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 17/324 (5%) Query: 67 ELTDFQLFIAANIYGFYK-KENGARR--FRKAYIQLARKNAKSQFLALIASYEIFPTQEK 123 +L FQ FI A ++ ++ E+G ++ F +I R K+ L+ + IF K Sbjct: 68 KLFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCM----IFECTTK 123 Query: 124 ------HRVFIAGWSREQSDEVYQAILEQLH-HAPILKGKYTSANGRVKKYKTNSIIQPL 176 + + I S +Q+ ++ I L + +K Y ++ K S I+ Sbjct: 124 NHGVDHYNIDIVATSEDQAKTSFEDIYNMLEENKDTMKNVYRWNLVAIQHRKNGSTIKYK 183 Query: 177 SREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCF 236 + AR DG P DE HA+E Y V SG+ + +TT G+ Sbjct: 184 TSNART-KDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGYVRGSVLD 242 Query: 237 KEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSA 296 ++L+ + N F IC+LD D++++++ W KANP++ Y + Sbjct: 243 DRKVLAQQVLNGE--KPNSKMFPFICKLDSPDEVQNKTKWAKANPMILYYKPLRIEIDQH 300 Query: 297 LKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMT 356 A E M F+TK MN +K +A + +P L+ P G+D + Sbjct: 301 WDDAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIGGIDFADV 360 Query: 357 TDLTSVGYVAVQDGFFYVGQHSFM 380 D +VG + ++G + H+F+ Sbjct: 361 RDFCAVGLLFKKEGKYIFKHHTFI 384 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 76.3 bits (186), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 23/295 (7%) Query: 106 SQFLALIASYEIFPTQEKH-RVFIAGWSREQSDEVYQAILEQLHHAPIL--KGKYTSANG 162 ++ LA I Y + E+ ++ ++Q+ + + + +PIL + K Sbjct: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 Query: 163 RVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMV--ARRSPL 220 R+ KTNS ++ +A K G NPS DE A + ++D L +GM AR PL Sbjct: 484 RIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 Query: 221 MAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDY---FVMICELDPEDDIKDESNWI 277 M TTAG + E +++ ++++ D +N D+ FV + E+D +E W Sbjct: 543 MVASTTAGNDTEGFAGLKHREMERVME---DPDNPDFKHIFVYMRNTPMEEDPWNEECWP 599 Query: 278 KANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSG 337 ANP + + E++R A P +F +N+W + +M+M W C G Sbjct: 600 HANPALGRFLS-WEAMRKQAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKG 657 Query: 338 EI----PDL----QGLPVYLGLDLSMTTDLTSVGYVAVQ-DGFFYVGQHSFMPDA 383 + DL G + GLDL+ DL S+ Y+ Q DG + ++P++ Sbjct: 658 TVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPES 712 Score = 26.9 bits (58), Expect = 0.48, Method: Compositional matrix adjust. Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 5/27 (18%) Query: 80 YGFYKKENGARRFRKAYIQLARKNAKS 106 +G YK RR+ A+I+LARKN K+ Sbjct: 72 FGCYK-----RRYEIAWIELARKNGKA 93 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 75.9 bits (185), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 7/237 (2%) Query: 49 EWSRQFNHVEGILAGQPIELTDFQLFIAANIYGFYKKENGA--RRFRKAYIQLARKNAKS 106 +W +F ++ G AGQP L +Q + + Y + G R+ R + +ARKN KS Sbjct: 33 KWIEEFCYLTGSFAGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKS 92 Query: 107 QFLALIASYEIFPTQ--EKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRV 164 A I Y + + + +V A R Q+ V+ + + ++ +P L + V Sbjct: 93 TIAAAIMLYHLIADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKLAA-VCNVQRDV 151 Query: 165 KKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVI 224 +YK N+ + R+ G NP+ +DEY ++S+++D L G AR P+ +I Sbjct: 152 IRYKDNTYRVVSADAGRQ--QGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLII 209 Query: 225 TTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANP 281 +TAG + + P + ++ + D Y +L D D W + NP Sbjct: 210 STAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNP 266 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 75.5 bits (184), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 93/399 (23%), Positives = 161/399 (40%), Gaps = 49/399 (12%) Query: 30 LAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAANIYGFYKKENGA 89 L DD YFD + + D+ +S ++ E+ DFQ FI ++ Y+ + Sbjct: 37 LNRDDL--YFDFQKIEDYVGFSEKWF----------FEIQDFQKFITCFVF-LYEADTLT 83 Query: 90 RRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKHRVFIAGWSREQSDEVYQAILEQL 147 F + +I +AR K+ +++ + ++ + P K+ + + S +Q+ +Q I + + Sbjct: 84 PYFSEFFISMARGGGKNGYISTLGAFFLTPLHGIPKYNMSVVANSEKQAQVSFQEIYDMI 143 Query: 148 HHAPILKGKYTSANGRVKKYKTNS-------IIQPLSREAR--------KLGDGKNPSLG 192 S + V+K K N+ +I+ +S +A+ K DG Sbjct: 144 E----------SNDLYVRKDKPNNPFNISKVLIEGISMKAQFVFDTSNEKTKDGAREGCV 193 Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 DE HA+E I +V SG+ P I T G E K + + +L + + Sbjct: 194 FFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDGHVREGFLDKLKERAANVLIGE--S 251 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPIVATYPE--GMESLRSALKVALEV---PEKM 307 D F IC++D ++++ D W KANP+ G + + + L + P Sbjct: 252 PEDRLFPFICKIDDKEELHDFDMWQKANPMFEAPMNDYGRQLFQEVKQQYLSLKFNPSGR 311 Query: 308 RSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAV 367 F+TK MN + A + ++P L GLD + D +VG + Sbjct: 312 TEFMTKRMNLPETDSQSVVAPWDDILATNRDMPSLDNHECIGGLDYASLKDFAAVGLLFK 371 Query: 368 QDGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 D + HSF A +E K P W E G +T Sbjct: 372 VDDEYIWKTHSFARKAFLDEYQL--KPPIHEWAEKGLLT 408 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 72.4 bits (176), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 16/338 (4%) Query: 49 EWSRQFNHVEGILAGQPIELTDFQLFIAANIYGFYKKENGA--RRFRKAYIQLARKNAKS 106 +W +F ++ G AGQP L +Q + + Y + G R+ R + +ARKN KS Sbjct: 30 KWIEEFCYLTGSFAGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKS 89 Query: 107 QFLALIASYEIFPTQ--EKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKYTSANGRV 164 A I Y + + + ++ A R Q+ V+ + + ++ +P L V Sbjct: 90 TIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLAA-VCDVQRDV 148 Query: 165 KKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVI 224 +YK N+ + R+ G NP+ +DEY + S+++D L G AR P+ +I Sbjct: 149 IRYKDNTYRVVSADAGRQ--QGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLII 206 Query: 225 TTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVA 284 +TAG + + P + ++ + D Y +L D D W NP Sbjct: 207 STAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACNPSYD 266 Query: 285 TYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQ- 343 + ++A + + E SF ++++V + + ++ W + + + L+ Sbjct: 267 IL--NPDDFKAAAQRSTEA-----SFRIYRLSQFV-RGASTWLPHGLWDSLAADDDPLEP 318 Query: 344 GLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMP 381 G V LG D S D T++ ++D +V H P Sbjct: 319 GDEVVLGFDGSWKGDSTALVACRIRDLKVFVLGHWEAP 356 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 71.2 bits (173), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 20/208 (9%) Query: 224 ITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV 283 I+TA N P ++ + + ++ D + + D Y ++ D D++ W K+NP++ Sbjct: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 Query: 284 ATYPEGMESLRSALKVALE-------VPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACS 336 +ES R L L + + F KNMN W+ N ++ + Sbjct: 69 -----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 Query: 337 GEIPDLQGLPVYLGLDLSMTTDLTSVGYV---AVQDGF--FYVGQHSFMPDARANE---K 388 D++G VY+GLD SM +D T++G+V +DG +++ QHSF+P +A K Sbjct: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 Query: 389 MATDKVPYDLWREMGFITYTSGEELIIN 416 M D V Y + G+ T TS + +IN Sbjct: 184 MEQDGVNYRDLEQKGYCTITSHPQGLIN 211 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 70.1 bits (170), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 21/350 (6%) Query: 71 FQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKHRVFI 128 FQ FI ANI+ K + A F + I + R K+ ++ I+ + P +++ + I Sbjct: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 Query: 129 AGWSREQS----DEVYQAILEQLHH--APILKGKYTSANGRVKKYKTNSIIQPLSREARK 182 S +Q+ DE+ +++ + K Y + ++ T S+I+ + K Sbjct: 125 VANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIR-YNTSNTK 183 Query: 183 LGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYT 242 DG I DE H E+ +V G+ +++ I+T GF E Sbjct: 184 TKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKI 243 Query: 243 SKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV-ATYPEGMESLRSALKVAL 301 + +L + +N F C+LD ++ D W KANP++ E ++L S ++ Sbjct: 244 ASVLSGKV--KNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEY 301 Query: 302 EVPEKMRS----FLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTT 357 RS F+TK MN + + A + EIP+L GLD + Sbjct: 302 NDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIR 361 Query: 358 DLTSVGYVAVQ-DGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 D SVG + + D + ++G HSF+ ++ + P W +MG +T Sbjct: 362 DFASVGLLFRKNDDYIWLG-HSFVRQGFLDD--VKLEPPIKEWEKMGLLT 408 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 70.1 bits (170), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 21/350 (6%) Query: 71 FQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKHRVFI 128 FQ FI ANI+ K + A F + I + R K+ ++ I+ + P +++ + I Sbjct: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 Query: 129 AGWSREQS----DEVYQAILEQLHH--APILKGKYTSANGRVKKYKTNSIIQPLSREARK 182 S +Q+ DE+ +++ + K Y + ++ T S+I+ + K Sbjct: 125 VANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIR-YNTSNTK 183 Query: 183 LGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYT 242 DG I DE H E+ +V G+ +++ I+T GF E Sbjct: 184 TKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKI 243 Query: 243 SKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV-ATYPEGMESLRSALKVAL 301 + +L + +N F C+LD ++ D W KANP++ E ++L S ++ Sbjct: 244 ASVLSGKV--KNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEY 301 Query: 302 EVPEKMRS----FLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTT 357 RS F+TK MN + + A + EIP+L GLD + Sbjct: 302 NDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIR 361 Query: 358 DLTSVGYVAVQ-DGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 D SVG + + D + ++G HSF+ ++ + P W +MG +T Sbjct: 362 DFASVGLLFRKNDDYIWLG-HSFVRQGFLDD--VKLEPPIKEWEKMGLLT 408 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 69.7 bits (169), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 147/350 (42%), Gaps = 21/350 (6%) Query: 71 FQLFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ--EKHRVFI 128 FQ FI ANI+ K + A F + I + R K+ ++ I+ + P +++ + I Sbjct: 66 FQRFIIANIFLIDKNTDEAF-FTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 Query: 129 AGWSREQS----DEVYQAILEQLHH--APILKGKYTSANGRVKKYKTNSIIQPLSREARK 182 S +Q+ DE+ +++ + K Y + ++ T S+I+ + K Sbjct: 125 VANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIR-YNTSNTK 183 Query: 183 LGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYT 242 DG I DE H E+ +V G+ +++ I+T GF E Sbjct: 184 TKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKI 243 Query: 243 SKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV-ATYPEGMESLRSALKVAL 301 + +L + +N F C+LD ++ D W KANP++ E ++L S ++ Sbjct: 244 ASVLSGKV--KNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEY 301 Query: 302 EVPEKMRS----FLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTT 357 RS F+TK MN + + A + EIP+L GLD + Sbjct: 302 NDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIR 361 Query: 358 DLTSVGYVAVQ-DGFFYVGQHSFMPDARANEKMATDKVPYDLWREMGFIT 406 D SVG + + D + ++G HSF+ ++ + P W +MG +T Sbjct: 362 DFASVGLLFRKNDDYIWLG-HSFVRQGFLDD--VKLEPPIKEWEKMGLLT 408 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 55.8 bits (133), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/328 (21%), Positives = 136/328 (41%), Gaps = 48/328 (14%) Query: 96 YIQLARKNAKSQFLAL-IASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILK 154 ++ L R + KS +A + ++ I Q + + Q+ V+ + Q + L+ Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 Query: 155 G--------------KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAH 200 ++TS KK +TN ++ G N SL I DE H + Sbjct: 157 VYNENKIFKSTKQGLEFTSFKTTFKK-QTNDTLR---------AQGGNSSLNIFDEVHTY 206 Query: 201 ETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 +I + ++ G ++ ++ T+G ++R Y + + + ND F + Sbjct: 207 -GEDITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGL 262 Query: 261 ICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVD 320 + L+ + +KD+ NW A P++ + P+ + ++A P FL NM + Sbjct: 263 LYMLENHEQVKDKKNWTMALPLIGSVPK-WSGVIEEYELAQGDPALQNKFLAFNMG--LP 319 Query: 321 QKDNGY------MKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 +D Y K+T + + Y+G+DLS+ DLT+V +V +G Y Sbjct: 320 MQDTAYYFTPQDTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTY- 373 Query: 375 GQHSFMPDARAN-EKMATDKVPYDLWRE 401 H+ R+ E++ T++ +LW E Sbjct: 374 -SHTLTFSVRSQYEQLDTEQ--QELWTE 398 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 55.5 bits (132), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/329 (22%), Positives = 134/329 (40%), Gaps = 50/329 (15%) Query: 96 YIQLARKNAKSQFLAL-IASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILK 154 ++ L R + KS +A + ++ I Q + + Q+ V+ + Q Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQ-------- 148 Query: 155 GKYTSANGRVKKYKTNSII----QPLSREARKL-----------GDGKNPSLGIVDEYHA 199 T A+ ++ Y N I Q L A K G N SL I DE H Sbjct: 149 ---TEASDTLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNIFDEVHT 205 Query: 200 HETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFV 259 + +I + ++ G ++ ++ T+G ++R Y + + + ND F Sbjct: 206 Y-GEDITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFG 261 Query: 260 MICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWV 319 ++ L+ + +KD+ NW A P++ P+ + ++A P FL NM + Sbjct: 262 LLYMLENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMG--L 318 Query: 320 DQKDNGY------MKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFY 373 +D Y K+T++ + Y+G+DLS+ DLT+V +V +G Y Sbjct: 319 PMQDTAYYFTPQDTKLTEFN-----LSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTY 373 Query: 374 VGQHSFMPDARAN-EKMATDKVPYDLWRE 401 H+ R+ E++ T++ +LW E Sbjct: 374 --SHTLTFSVRSQYEQLDTEQ--QELWTE 398 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 54.7 bits (130), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/321 (21%), Positives = 134/321 (41%), Gaps = 34/321 (10%) Query: 96 YIQLARKNAKSQFLAL-IASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILK 154 ++ L R + KS +A + ++ I Q + + Q+ V+ + Q + L+ Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 Query: 155 G-------KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYD 207 K T +KT + + + + G N SL I DE H + +I + Sbjct: 157 VYNENKIFKSTKQGLEFASFKTT--FKKQTNDTLR-AQGGNSSLNIFDEVHTY-GEDITE 212 Query: 208 VLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPE 267 ++ G ++ ++ T+G ++R Y + + + ND F ++ L+ Sbjct: 213 SVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGLLYMLENH 269 Query: 268 DDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGY- 326 + +KD+ NW A P++ + P+ + ++A P FL NM + +D Y Sbjct: 270 EQVKDKKNWTMALPLIGSVPK-WSGVIEEYELAQGDPALQNKFLAFNMG--LPMQDTAYY 326 Query: 327 -----MKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMP 381 K+T + + Y+G+DLS+ DLT+V +V +G Y H+ Sbjct: 327 FTPQDTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTY--SHTLTF 379 Query: 382 DARAN-EKMATDKVPYDLWRE 401 R+ E++ T++ +LW E Sbjct: 380 SVRSQYEQLDTEQ--QELWTE 398 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 54.7 bits (130), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 48/328 (14%) Query: 96 YIQLARKNAKSQFLAL-IASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILK 154 ++ L R + KS +A + ++ I Q + + Q+ V+ + Q + L+ Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 Query: 155 G--------------KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAH 200 ++TS KK +TN ++ G N SL I DE H + Sbjct: 157 VYNENKIFKSTKQGLEFTSFKTTFKK-QTNDTLRA---------QGGNSSLNIFDEVHTY 206 Query: 201 ETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 +I + ++ G ++ ++ T+G ++R Y + + + ND F + Sbjct: 207 -GEDITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGL 262 Query: 261 ICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVD 320 + L+ + +KD+ NW A P++ P+ + ++A P FL NM + Sbjct: 263 LYMLENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMG--LP 319 Query: 321 QKDNGY------MKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 +D Y K+T + + Y+G+DLS+ DLT+V +V +G Y Sbjct: 320 MQDTAYYFTPQDTKLTDF-----NLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTY- 373 Query: 375 GQHSFMPDARAN-EKMATDKVPYDLWRE 401 H+ R+ E++ T++ +LW E Sbjct: 374 -SHTLTFSVRSQYEQLDTEQ--QELWTE 398 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 52.8 bits (125), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 46/327 (14%) Query: 96 YIQLARKNAKSQFLAL-IASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILK 154 ++ L R + KS +A + ++ I Q + + Q+ V+ + Q + L+ Sbjct: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 Query: 155 G--------------KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAH 200 ++TS KK +TN ++ G N SL I DE H + Sbjct: 157 VYNENKIFKSTKQGLEFTSFKTTFKK-QTNDTLR---------AQGGNSSLNIFDEVHTY 206 Query: 201 ETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 +I + ++ G ++ ++ T+G ++R Y + + + ND F + Sbjct: 207 -GEDITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGL 262 Query: 261 ICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVD 320 + L+ + +KD+ NW A P++ P+ + ++A P FL NM + Sbjct: 263 LYMLENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMG--LP 319 Query: 321 QKDNGY------MKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 +D Y K+T + + Y+G+DLS+ DLT+V +V +G Y Sbjct: 320 MQDTAYYFTPQDTKLTDF-----NLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYS 374 Query: 375 GQHSFMPDARANEKMATDKVPYDLWRE 401 +F ++ E++ T++ +LW E Sbjct: 375 YTLTFSVRSQY-EQLDTEQ--QELWTE 398 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/307 (23%), Positives = 127/307 (41%), Gaps = 37/307 (12%) Query: 97 IQLARKNAKSQFLALIASYEIFPTQEKHRVF-IAGWSREQSDEVYQAILEQLHHAP-ILK 154 + + R NAKS +IA E+F + + V + ++Q++++ + + + Sbjct: 81 VIVGRSNAKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRAMGNCQGTII 140 Query: 155 GKYTSA---NGRVKKYKTNSIIQPLSREARKLG------DGKNPSLGIVDEYHAHETSEI 205 K+ + N K NSI++ E DG L I+DE+ A + + + Sbjct: 141 NKFKNQFKLNKEQILVKDNSILKSKGTEISIYASNEDTLDGGREQLVIIDEFGAFKKNPL 200 Query: 206 YDVLDSGMVARRSPLMA-----VITTAGFNMERPCFKEYQYTSKILDPDIDTENDDY--F 258 + G+ + L VI ++ E +KE+ ++DD+ + Sbjct: 201 I-TIRQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEW------------VKDDDFSHW 247 Query: 259 VMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRW 318 V LD D++KD S +IKANP + Y +E ++ A+ P KM +TK N Sbjct: 248 VFYYALDDYDEVKDSSKYIKANPALG-YTLSLEDIQKDFIGAIGNPVKMAKIITKRFNLS 306 Query: 319 VDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDL--TSVGYVAVQDGFFYVGQ 376 + + K C D G V +G D S+ D+ T +GY ++G +Y Sbjct: 307 MTDSTTIFSKQLV-DKCLVPPLDFSGRLVAIGSDFSVRGDVWGTVIGY--RENGHYYFKA 363 Query: 377 HSFMPDA 383 MP++ Sbjct: 364 IPVMPES 370 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:GeneI D:4157223 Length = 545 Score = 43.5 bits (101), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 44 VVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAANIYGFYKKEN---GARRFRKAYIQLA 100 V DF E F G L+GQP L D + + +Y Y + + G RRF +A ++L Sbjct: 20 VCDFIEDRMVFG--PGSLSGQPARLDDEKRALVYRLYELYPRGHHLAGRRRFERAGVELR 77 Query: 101 RKNAKSQFLALIASYEIFP 119 + AK++F A I E+ P Sbjct: 78 KGVAKTEFAAWICGVELHP 96 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:GeneI D:4157626 Length = 545 Score = 43.5 bits (101), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Query: 44 VVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAANIYGFYKKEN---GARRFRKAYIQLA 100 V DF E F G L+GQP L D + + +Y Y + + G RRF +A ++L Sbjct: 20 VCDFIEDRMVFG--PGSLSGQPARLDDEKRALVYRLYELYPRGHHLAGRRRFERAGVELR 77 Query: 101 RKNAKSQFLALIASYEIFP 119 + AK++F A I E+ P Sbjct: 78 KGVAKTEFAAWICGVELHP 96 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 39.7 bits (91), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 34/271 (12%) Query: 88 GARRFRKAYIQLARKNAKSQFLALIASYEIF------PTQEKHRVFIAGWSREQSDEVYQ 141 G RFRKA + + R+N K+ A++A+Y ++ P Q + FI + ++ D + Sbjct: 59 GRLRFRKALVIVGRQNGKTLIAAVLAAYWLYVDAGRWPDQLPEQDFIVVGAAQKLDIAMK 118 Query: 142 AILEQLHHAPILKGKYTSANGRVKKYK--------TNSIIQ----------PLSREARKL 183 + K A RV + TN + P + E + Sbjct: 119 PWRQVRRWGAPDDPKVGIARDRVPDLQAFTYPPRTTNGETELRTHGGAAYLPRTFEGAR- 177 Query: 184 GDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTS 243 G++ + I+DE E + ++ A L+ + AG R ++ + Sbjct: 178 --GQSAARLILDELREQYDYEGWSAIEKSANAMFDSLLVAFSNAGTKRSR-VLRDVR--- 231 Query: 244 KILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEV 303 +I +D +F+ +P+ + DE + +ANP A Y GM ++ ++ A E Sbjct: 232 QIGHEGVDDRETQWFIAEWSAEPDASLDDERAFAQANP-SAGYLAGM-TIAGLMRAAAEA 289 Query: 304 PEKMRSFLTKNMNRWVDQKDNGYMKMTKWRA 334 EK + + + +WV K + ++ +W++ Sbjct: 290 KEKNVERI-EVLGQWVTAKVDNFIDSEEWKS 319 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 35.0 bits (79), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 22/151 (14%) Query: 99 LARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSDEVYQAILE----------QLH 148 + R+N K+Q +AL Y +F EK W + +VY I+E +L Sbjct: 104 IPRQNGKTQLIALRIIYGLFFLGEKIVYTAQRW--QTVKDVYDRIVEIIKRRPSLLRRLK 161 Query: 149 HAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNP-SLGIVDEYHAHETSEIYD 207 P + Y+ A + Y TN + + +G G+ L I DE + +I D Sbjct: 162 PMPGVPDGYSEAGQHGEIYTTNGGSLDMGPRTKAVGRGQTKIDLAIFDEAY-----DIKD 216 Query: 208 VLDSGMV----ARRSPLMAVITTAGFNMERP 234 VL G+ A +P I+TA E P Sbjct: 217 VLVGGLTGAQKAATNPQTIYISTAAVASEHP 247 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 33.9 bits (76), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 7/86 (8%) Query: 291 ESLRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEI--PDLQGLPVY 348 E L S L + + E R FL + ++ ++ ++ +W C P +G + Sbjct: 323 EILMSILDIKNSITESRRKFLNQ-----INAHEDSWISPNEWNRCQPSTIQPLTKGDRIT 377 Query: 349 LGLDLSMTTDLTSVGYVAVQDGFFYV 374 LG D S + D T++ V DG ++ Sbjct: 378 LGFDGSKSNDWTALVACRVDDGMLFL 403 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 33.1 bits (74), Expect = 0.006, Method: Compositional matrix adjust. Identities = 50/242 (20%), Positives = 87/242 (35%), Gaps = 31/242 (12%) Query: 99 LARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKYT 158 + R NAK+ IA E+ ++ + ++ E Q L L P Sbjct: 62 VGRGNAKTMLAEFIAGLELIAGEKGAEFIGMSVTVDKGIESIQKPLNGLVTNPGTSFSKL 121 Query: 159 SANGRVKKYKTNSIIQPLSREARKLG------------DGKNPSLGIVDEYHAHETSEIY 206 G + + I PLSR K +G L +VDE+ + + Sbjct: 122 FKKGDISYTIDSMSINPLSRLRSKGATFRIVSAADSALNGGREKLAVVDEFGTFPNNPLP 181 Query: 207 DVLDSGMVARRSPLMAVITT------AGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 + + + + L+ IT+ ++ E F+ Y + + +N + + Sbjct: 182 TIREG--LEKNEGLLLTITSNNKVRGGAYDEELDTFRGY---------NDEMDNFKQWGL 230 Query: 261 ICELDPEDDIKDESNWIKANPIV--ATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRW 318 I ELD I+D + W KANP + A E++ L A K + +K N Sbjct: 231 IFELDDYSQIEDPNEWYKANPALDEAKGTVSTETITRELNAARHSTIKANNLFSKRFNFS 290 Query: 319 VD 320 V+ Sbjct: 291 VN 292 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 32.3 bits (72), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 39/91 (42%) Query: 97 IQLARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGK 156 I R NAKS ++ I T KH I + EQ+ + +AI +L P L Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 157 YTSANGRVKKYKTNSIIQPLSREARKLGDGK 187 + G+ + ++ +I+ + + G GK Sbjct: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGK 179 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 32.0 bits (71), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 39/91 (42%) Query: 97 IQLARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGK 156 I R NAKS ++ I T KH I + EQ+ + +AI +L P L Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 157 YTSANGRVKKYKTNSIIQPLSREARKLGDGK 187 + G+ + ++ +I+ + + G GK Sbjct: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGK 179 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 32.0 bits (71), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 32/194 (16%) Query: 193 IVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDT 252 ++DE A + + I +D AR +P + ++ G ++ K+ D + Sbjct: 194 VLDEAFALDEASIA-AIDYATSARANPFIIYASSTGL-------EDSTELEKLHDRGMRQ 245 Query: 253 ENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLT 312 + D F+ C D+ DE N+ ++NP + Y +E +R + ++F Sbjct: 246 DPDMLFMEWCAT--TRDLDDEENYYRSNPALG-YRISIERIRKERNRHSD-----KTFGR 297 Query: 313 KNMNRWVDQKDNGYMKMTKWRA---CSGEIPD---LQG---------LPVYLGLDLSMTT 357 + + W D N + +W++ C G + D ++G P + +D + + Sbjct: 298 ERLGLWNDNAFNAVIPADQWKSLCLCHGTVHDEHRVEGAEAGWSRIVTPTVVAIDSAPDS 357 Query: 358 DLTSVGYVAV-QDG 370 LT++ + QDG Sbjct: 358 SLTTISWAGKNQDG 371 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 31.6 bits (70), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 17/94 (18%) Query: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGE------------IP 340 ++S L + E R FL + V+ ++ ++ +W C + +P Sbjct: 344 IKSILSTKNSITESRRKFLNQ-----VNAAEDSWLSPQEWNRCFADPEKYLERRGHEFVP 398 Query: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 +G + LG D S + D T++ V DG +V Sbjct: 399 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFV 432 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 31.2 bits (69), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 31/125 (24%) Query: 278 KANPIVATYPEGMESLRSALKVA------LEVPEKMRSFL-TKN---------MNRWVDQ 321 K NP + EG+E LR L +A L + + ++S L TKN +N+ V+ Sbjct: 312 KENP--DGFREGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLNQ-VNA 368 Query: 322 KDNGYMKMTKWRACSGE------------IPDLQGLPVYLGLDLSMTTDLTSVGYVAVQD 369 ++ ++ +W C + P +G + LG D S + D T++ V D Sbjct: 369 AEDSWLSPQEWNRCFADPDKYLDKMGFELAPLDRGQKITLGFDGSKSNDWTALVGCRVSD 428 Query: 370 GFFYV 374 G +V Sbjct: 429 GLLFV 433 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 31.2 bits (69), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEI--PDLQGLPVYLG 350 L S L ++ E R FL + V+ ++ ++ W C P +G + LG Sbjct: 321 LMSVLSAKNDIIESRRKFLNQ-----VNASEDSWLAPADWDKCHSTSLRPLTKGDKITLG 375 Query: 351 LDLSMTTDLTSVGYVAVQDGFFYV 374 D S + D T++ V+DG ++ Sbjct: 376 FDGSKSNDWTALVACRVEDGAVFL 399 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 31.2 bits (69), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 74 FIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLA-LIASYEIFPTQEKHRVFIAGWS 132 F+AA I+G Y E G + R+ ++ +++KN KS A ++ + I +E+ I + Sbjct: 62 FVAA-IFGAYDAETGKQLIREFFLLISKKNTKSTIAAGIMLTAVILCWREEEEHLILAPT 120 Query: 133 REQSDEVYQ 141 +E +D ++ Sbjct: 121 KEVADNSFK 129 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 30.8 bits (68), Expect = 0.028, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 75 IAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLALI 112 + A ++G Y + G R ++ +I + +KN+KS A I Sbjct: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGI 101 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 30.4 bits (67), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 17/94 (18%) Query: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGEI------------P 340 ++S L + E R FL + V+ ++ ++ +W C ++ P Sbjct: 343 IKSILSTKNPITESRRKFLNQ-----VNAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAP 397 Query: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 +G + LG D S + D T++ V DG +V Sbjct: 398 LQRGDRITLGFDGSKSNDWTALVGCRVSDGLLFV 431 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 30.4 bits (67), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKW-RACSGEIPDL-QGLPVYLG 350 L S L +V E R FL + V+ + ++ ++W R +P L +G + LG Sbjct: 321 LMSVLTAKNDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLG 375 Query: 351 LDLSMTTDLTSVGYVAVQDGFFYV 374 D S++ D T++ V+DG ++ Sbjct: 376 FDGSLSNDHTALTACRVEDGALFL 399 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 30.4 bits (67), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKW-RACSGEIPDL-QGLPVYLG 350 L S L +V E R FL + V+ + ++ ++W R +P L +G + LG Sbjct: 662 LMSVLTAKNDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLG 716 Query: 351 LDLSMTTDLTSVGYVAVQDGFFYV 374 D S++ D T++ V+DG ++ Sbjct: 717 FDGSLSNDHTALTACRVEDGALFL 740 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 26.9 bits (58), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Query: 117 IFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGKY----TSANGRVKKYKTNSI 172 +FP ++ IA ++ Q+ EV + I + +P L+ + TS N ++ S Sbjct: 104 LFPGT---KIVIASGTKGQAREVIEKIDDLRKESPNLRREIEDLKTSTNDAKVEFHNGSW 160 Query: 173 IQPLSREARKLGDGKNPSLGIVDEYHAHETSEIYDVLDSGMVARRSP 219 I+ ++ + K +L IVDE+ + I VL + A RSP Sbjct: 161 IKIVA--SNDGARSKRANLLIVDEFRMVDFEIISKVLRKFLTAPRSP 205 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 6/166 (3%) Query: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLA-LIASYEIFPTQEKHRVFIAGWSREQSD 137 ++G Y + G ++ ++ + +K+AKS + ++ + I ++ I + E + Sbjct: 69 VFGAYDADTGNNLLKELFLLVPKKSAKSSLASGIMLTALIIGWRKSASYIIISPTIEIAG 128 Query: 138 EVYQAILEQLHHAPIL-KGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDE 196 ++ + + P L K SA+ R + + + A G S+ ++DE Sbjct: 129 NSFKPAADSVRADPELSKLLQVSAHTRTITNRVTGAVLKVLAAAEDTVTGSKASVLLIDE 188 Query: 197 YH----AHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKE 238 H S + G+ AR + +TT FK Sbjct: 189 LHLMGLKENGSSMLREAAGGLAARPEGFVLKLTTQSSQAPAGVFKS 234 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWR 400 +L G P+ L ++ T+ G FY ++ ++P R K+A+ + WR Sbjct: 219 ELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWR 278 Query: 401 EMGFITYTS 409 + F T +S Sbjct: 279 KTYFSTPSS 287 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 24.6 bits (52), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWR 400 +L G P+ L ++ T+ G FY ++ ++P R K+A+ + WR Sbjct: 231 ELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWR 290 Query: 401 EMGFITYTS 409 + F T +S Sbjct: 291 KTYFSTPSS 299 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWR 400 +L G P+ L ++ T+ G FY ++ ++P R K+A+ + WR Sbjct: 231 ELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWR 290 Query: 401 EMGFITYTS 409 + F T +S Sbjct: 291 KTYFSTPSS 299 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 23.5 bits (49), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 9/79 (11%) Query: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAV-QDGFFYVGQHSFMPDARANEKMATDKVPYDLW 399 ++ LP +GLD D T+ ++AV QD + ++ D + + T+++ +L Sbjct: 262 EIANLPKSVGLDFGFKHDPTAGEFIAVDQD-----NRIVYIYDEFYKQHLLTNQIAQELA 316 Query: 400 REMGF---ITYTSGEELII 415 + F IT S E+ +I Sbjct: 317 KHKAFGLPITADSAEQRMI 335 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 94/238 (39%), Gaps = 16/238 (6%) Query: 84 KKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSD--EVYQ 141 K+++G + + R+ K+ L + T ++ A +R ++ Q Sbjct: 54 KRDDGLYAADMFAMSIPRQTGKTYLLGALVFALCIKTPNTTVIWTAHRTRTAAETFRSMQ 113 Query: 142 AILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDG-KNPSLGIVDEYHAH 200 + ++ AP + +T +K S I +RE R G G + I DE Sbjct: 114 GLAKRDKIAPHILNVHTGNGKEAVLFKNGSRILFGARE-RGFGRGFAGVDVLIFDEAQIL 172 Query: 201 ETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 + + D++ + A +PL+ + T +P +T LD +D +V Sbjct: 173 TENAMDDMVPATNAAP-NPLILLAGTP----PKPTDPGEVFTVMRLDALAGDVDDVGYVE 227 Query: 261 ICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRW 318 I D + D D S W K NP +YP S R+ L++ + ++ SF + M W Sbjct: 228 ISA-DEDADPDDRSQWRKMNP---SYPH-RTSARAILRMRKALGDE--SFKREAMGIW 278 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.135 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 198,827 Number of Sequences: 514 Number of extensions: 9544 Number of successful extensions: 293 Number of sequences better than 100.0: 92 Number of HSP's better than 100.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 104 length of query: 416 length of database: 206,069 effective HSP length: 74 effective length of query: 342 effective length of database: 168,033 effective search space: 57467286 effective search space used: 57467286 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)