BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:3842|NCBI_annot:hypothetical protein|genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi:96330 40;uniprot:Q9T1F9;genbank:GeneID:1262205 (624 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 1296 0.0 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 808 0.0 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 800 0.0 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 778 0.0 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 773 0.0 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 771 0.0 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 676 0.0 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 448 e-128 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 415 e-117 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 412 e-117 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 390 e-110 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 234 2e-63 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 219 7e-59 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 196 5e-52 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 182 1e-47 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 180 4e-47 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 180 4e-47 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 180 4e-47 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 180 5e-47 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 180 5e-47 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 150 3e-38 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 150 3e-38 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 148 2e-37 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 148 2e-37 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 140 4e-35 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 116 1e-27 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 113 7e-27 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 112 1e-26 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 110 3e-26 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 103 6e-24 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 103 6e-24 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 102 1e-23 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 102 1e-23 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 101 3e-23 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 99 1e-22 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 97 5e-22 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 96 1e-21 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 94 4e-21 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 85 2e-18 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 80 5e-17 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 75 3e-15 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 69 2e-13 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 69 2e-13 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 66 1e-12 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 65 2e-12 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 61 3e-11 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 60 1e-10 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 55 2e-09 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 54 4e-09 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 50 6e-08 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 50 6e-08 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 46 2e-06 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 44 5e-06 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 44 6e-06 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 41 4e-05 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 41 5e-05 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 41 5e-05 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 41 5e-05 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 39 2e-04 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 39 3e-04 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 39 3e-04 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 37 8e-04 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 37 9e-04 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 35 0.003 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 31 0.049 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 31 0.052 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 30 0.088 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 30 0.10 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 30 0.10 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 29 0.20 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 27 0.76 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 26 1.6 gi|3411|lcl|protein:vir:101415 Length: 203 # NCBI annotation: Tu... 25 2.3 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 25 2.3 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 25 2.5 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 25 2.9 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 24 4.4 gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: put... 24 5.7 gi|10327|lcl|protein:vir:97406 Length: 212 # NCBI annotation: ma... 24 5.7 gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: puta... 23 7.3 gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: put... 23 7.8 gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: maj... 23 8.3 gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: maj... 23 9.6 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 1296 bits (3355), Expect = 0.0, Method: Compositional matrix adjust. Identities = 624/624 (100%), Positives = 624/624 (100%) Query: 1 MKIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDL 60 MKIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDL Sbjct: 1 MKIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDL 60 Query: 61 RRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKR 120 RRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKR Sbjct: 61 RRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKR 120 Query: 121 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR 180 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR Sbjct: 121 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR 180 Query: 181 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK 240 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK Sbjct: 181 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK 240 Query: 241 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI 300 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI Sbjct: 241 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI 300 Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL Sbjct: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHS 420 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHS Sbjct: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHS 420 Query: 421 FIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKF 480 FIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKF Sbjct: 421 FIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKF 480 Query: 481 FGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVM 540 FGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVM Sbjct: 481 FGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVM 540 Query: 541 QKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTEIDRM 600 QKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTEIDRM Sbjct: 541 QKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTEIDRM 600 Query: 601 TEQQVLDWFKNSKSGLLGGENTGY 624 TEQQVLDWFKNSKSGLLGGENTGY Sbjct: 601 TEQQVLDWFKNSKSGLLGGENTGY 624 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/623 (61%), Positives = 485/623 (77%), Gaps = 9/623 (1%) Query: 1 MKIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDL 60 MK +LT+THD++ A+ D++DI KY D T Y F VL G AGY IKLA FRHL DL Sbjct: 1 MKTNLTKTHDIDAAYKEFDFTDIAKKYQDDGTKYCFDVLEGRITAGYMIKLACFRHLRDL 60 Query: 61 RRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKR 120 +RQG DFPY YD DEA RLLRFA+ICPNVDTGEPTKLM WQ+F ++FGWR+ + KR Sbjct: 61 QRQGNDDFPYSYDTDEAARLLRFARICPNVDTGEPTKLMAWQKFILCMLFGWRNANGGKR 120 Query: 121 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR 180 F+R I SV RGQGKTY MAIL YS+ IES+GLSNQDYLV SINFKQT KL GY+ SMM+ Sbjct: 121 FSRAIVSVGRGQGKTYLMAILTAYSYFIESLGLSNQDYLVTSINFKQTNKLLGYIKSMMK 180 Query: 181 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK 240 +IIQ EPFKS ANE L + SDQ+IMK NNNVLRAIS E+GQYDS+HF TAIFDEIGE++ Sbjct: 181 QIIQNEPFKSLANETELGLHSDQVIMKANNNVLRAISAESGQYDSFHFTTAIFDEIGEIE 240 Query: 241 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI 300 +R+ VSKI+SGQVKV N QFIQIST+YP+P+VPF EDQ+++ QAME D RDAD+YL L+ Sbjct: 241 TRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLCLV 300 Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WSQD+L+E +KPETW KSNPLLDL +R+NL+KGL DKRDSDLL+GNI+DFQ KN+N WL Sbjct: 301 WSQDNLEEVFKPETWAKSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWL 360 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KFHI 416 ++S+L+LKD+E+AV +F+ G V++G D SMFSDNTA+ FVYPY +DG K+H+ Sbjct: 361 LADSNSFLDLKDIENAVIPEFDRRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHV 420 Query: 417 EQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQH 474 EQHSFIP+QQAGS+EAK +QDG+ YR+ +CTIT+HPQG+INPE++Y+W ++YVE + Sbjct: 421 EQHSFIPWQQAGSLEAKMEQDGVNYRDLEAKGFCTITSHPQGLINPEEVYRWFVDYVEDN 480 Query: 475 QLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTI 534 L V FFGYD + + I ++L NT +M I+QRTS L +PTKFLQ LF+ +T Sbjct: 481 ALDVVFFGYD---AMMINKIIKALESNTSLPLMPIRQRTSELKDPTKFLQTLFIEGNITR 537 Query: 535 PNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKD 594 +D +M+KAL+NAVIK D IGI VDK K+T +IDVVDA+IDA Y MY F++ + NN Sbjct: 538 LDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAITNNPT 597 Query: 595 TEIDRMTEQQVLDWFKNSKSGLL 617 +++ M+++ VL+W KN +SGLL Sbjct: 598 WKVEHMSQEAVLEWLKNPESGLL 620 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/623 (61%), Positives = 483/623 (77%), Gaps = 9/623 (1%) Query: 1 MKIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDL 60 MK +L +THD++ A+ D+SD+ KY D T Y F L G + GY IKLA FRHL DL Sbjct: 1 MKTNLIKTHDIDAAYKEFDFSDVAKKYQDDGTKYCFDALEGRIVTGYMIKLACFRHLRDL 60 Query: 61 RRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKR 120 +RQG DFPY YD EA++LLRFA+ICPNVDTGEPT+LM WQ+F ++FGWR+ + KR Sbjct: 61 QRQGNDDFPYTYDTAEADKLLRFARICPNVDTGEPTQLMPWQKFILCMLFGWRNANGGKR 120 Query: 121 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR 180 F+R I SV RGQGKTY MAIL YS+ IES GLSNQDYLV SI FKQT KL GY+ SMM+ Sbjct: 121 FSRAIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQDYLVTSIKFKQTNKLLGYIKSMMK 180 Query: 181 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK 240 +IIQ EPFKS ANE L + SDQ+IMK NNN+LRAIS E+GQYDS+HF TAIFDE+GE++ Sbjct: 181 QIIQKEPFKSLANETELGLHSDQVIMKANNNILRAISAESGQYDSFHFTTAIFDEMGEIE 240 Query: 241 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI 300 +R VSKI+SGQVKV N QFIQIST+YP+P+VPF EDQ ++ QAME D R+AD+YL L+ Sbjct: 241 TRNAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLV 300 Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WSQD+L+E ++PETW+KSNPLLDL +RDNL+KGL DKRDSDLL+GN+SDFQ KN+N WL Sbjct: 301 WSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWL 360 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KFHI 416 ++S+L+LKD+E+AV +DF+I G V++G D SMFSDNTAL FVYPY +DG K+HI Sbjct: 361 LADSNSFLDLKDIENAVIDDFDIKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHI 420 Query: 417 EQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQH 474 EQHSFIP+QQAGSIEAK +QDGI YR+ +CTIT+HPQG+INPE++Y+W ++YVE + Sbjct: 421 EQHSFIPWQQAGSIEAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDN 480 Query: 475 QLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTI 534 L V FFGYD + V I ++L NT + +M I+QRTS L +PTKFLQ LF+ +T Sbjct: 481 SLDVVFFGYD---AMMVNKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITR 537 Query: 535 PNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKD 594 +D +M+KAL+NAVIK D IGI VDK K+T +IDVVDA+IDA Y MY F++ + NN Sbjct: 538 RDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAITNNPT 597 Query: 595 TEIDRMTEQQVLDWFKNSKSGLL 617 +++ M+++ VL+W KN +SGLL Sbjct: 598 WKVEHMSQEAVLEWLKNPESGLL 620 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/621 (59%), Positives = 479/621 (77%), Gaps = 9/621 (1%) Query: 1 MKIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDL 60 MKIDLTQTHD+ G ++S+++ DI+ +Y DPAT YAF VL+ GY ++LA FRHL DL Sbjct: 11 MKIDLTQTHDIIGTYHSLNYEDIREEYQDPATKYAFDVLDEKYTTGYLMQLACFRHLQDL 70 Query: 61 RRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKR 120 +R G DFP++Y+V RL++F+K+ PNVDT EPTKLMEWQ+F +L+ GWR+K+ KR Sbjct: 71 KRIGNEDFPFNYEVKHVKRLMKFSKMAPNVDTMEPTKLMEWQKFMLSLLIGWRNKEGGKR 130 Query: 121 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR 180 F+R I SV RGQGKTY +AIL+ YSF +ES GLSNQD+LV+SIN KQT KL+GY+ SM+ Sbjct: 131 FSRAIISVGRGQGKTYMLAILMAYSFFVESRGLSNQDFLVSSINAKQTGKLYGYLKSMIN 190 Query: 181 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK 240 + I P+K+ A++ +L +Q+D+IIM+ +NNV+R IS EAGQYDSYHF TAIFDEIGEVK Sbjct: 191 VLRTINPWKNIADKTDLSLQADKIIMRNHNNVIRPISHEAGQYDSYHFTTAIFDEIGEVK 250 Query: 241 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI 300 SRE +SKI+SGQVKV N QF+QIST+YPDPTVPFHED+KM+ QAMEQD+ RDAD+YL LI Sbjct: 251 SREKISKIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLI 310 Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WS DSLDETYKPETWVKSNPLLDL + DNL++GL DKRD+D+LTG + DFQ KNLN+WL Sbjct: 311 WSNDSLDETYKPETWVKSNPLLDLASEHDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWL 370 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY----DDGKFHI 416 DSYLNL DVE A+ +FNI G ++G DYSM SDNTA++FVYPY K+H+ Sbjct: 371 SSDIDSYLNLADVEKAIVPEFNIYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHV 430 Query: 417 EQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQH 474 EQHSFIPFQ AGSIEAKEKQDGI YR +CTIT+H QG+IN ++ Y+W++NY+E++ Sbjct: 431 EQHSFIPFQAAGSIEAKEKQDGINYRELETKGFCTITSHQQGLINDDEFYEWIVNYIEEN 490 Query: 475 QLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTI 534 L V FFGYD G V + + L NT + + I+QRT LA PTKFLQ++FV ++ Sbjct: 491 SLDVLFFGYDAMG---VTKVIQMLLNNTGFNLQPIRQRTGELAKPTKFLQKIFVEGTISR 547 Query: 535 PNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKD 594 +D +M+KALLNAV++ D +GI VDK KATL+IDVVDAIIDALYQ M +F++ N++ Sbjct: 548 LDDKIMEKALLNAVLREDSVGIQVDKRKATLKIDVVDAIIDALYQGMNHFEDYGMANDRS 607 Query: 595 TEIDRMTEQQVLDWFKNSKSG 615 +++ MT +QV +W + +SG Sbjct: 608 WQVEHMTPEQVKEWVTSQESG 628 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/623 (59%), Positives = 483/623 (77%), Gaps = 12/623 (1%) Query: 2 KIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLR 61 K+DLTQ HDV GA++SID+S+I+ KY DP T YAF+VL+G +GY KLA+FRHL DL+ Sbjct: 20 KVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQ 79 Query: 62 RQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRF 121 R G+ DFPY Y E LL+ A + PNVDTGEPT+LM WQ+F ++ GWR+ + KRF Sbjct: 80 RIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRF 139 Query: 122 TRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRK 181 T I SV+RGQGKTY +AIL+ YSFL ES+GLSNQD+LV+SINFKQT KLFGYV +M++ Sbjct: 140 TVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKT 199 Query: 182 IIQIEPFKSYANEVNLY---IQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGE 238 +I+IEPFK+ A E L I +D+++MKK NN +RAIS EAGQYDS+HF TAIFDEIGE Sbjct: 200 VIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGE 259 Query: 239 VKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLG 298 V +RE +SKI+SGQV V NHQF+QISTSYPDP+VPF +DQK + +AME+DW R+AD+ L Sbjct: 260 VTNREKISKIVSGQVLVKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLC 319 Query: 299 LIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNL 358 L+W+QD L ET++PETWVKSNPLL+L D++D LLKGL DKR+SDLL G + DFQTKNLN+ Sbjct: 320 LVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNM 379 Query: 359 WLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KF 414 WL+Q DSYLNL DVE A+ +F+I G +IG DYSM SDNTA++FV+PY D+G K+ Sbjct: 380 WLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKW 439 Query: 415 HIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY--CTITAHPQGIINPEQIYKWLLNYVE 472 H+EQHSF+PFQ+AGSI+AKEKQDGI YR +Y CT+T+H QG+IN +++Y+W++NY+E Sbjct: 440 HVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIE 499 Query: 473 QHQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKV 532 + L V FFGYD G + + + L NT + + I+QRTS L +PTKFLQ+LFV + Sbjct: 500 DNALDVIFFGYDAMG---ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSI 556 Query: 533 TIPNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNN 592 + +D +M+K+LLNAV++ D IGI VDK KATL+IDVVDAIIDAL+Q MY+F++ N+ Sbjct: 557 SRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMAND 616 Query: 593 KDTEIDRMTEQQVLDWFKNSKSG 615 K +++ MT +QV +W + +SG Sbjct: 617 KSWQVEHMTPEQVKEWVTSQESG 639 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/622 (59%), Positives = 482/622 (77%), Gaps = 12/622 (1%) Query: 2 KIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLR 61 K+DLTQ HDV GA++SID+S+I+ KY DP T YAF+VL+G +GY KLA+FRHL DL+ Sbjct: 23 KVDLTQDHDVLGAYHSIDFSEIRAKYRDPGTRYAFAVLDGITKSGYLTKLAAFRHLRDLQ 82 Query: 62 RQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRF 121 R G+ DFPY Y E LL+ A + PNVDTGEPT+LM WQ+F ++ GWR+ + KRF Sbjct: 83 RIGREDFPYRYSKKEIKNLLKVASVVPNVDTGEPTELMPWQKFIMCMLIGWRNSEGGKRF 142 Query: 122 TRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRK 181 T I SV+RGQGKTY +AIL+ YSFL ES+GLSNQD+LV+SINFKQT KLFGYV +M++ Sbjct: 143 TVAIISVSRGQGKTYILAILMVYSFLFESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKT 202 Query: 182 IIQIEPFKSYANEVNLY---IQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGE 238 +I+IEPFK+ A E L I +D+++MKK NN +RAIS EAGQYDS+HF TAIFDEIGE Sbjct: 203 VIKIEPFKTIAAETGLTDRSILNDEVVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGE 262 Query: 239 VKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLG 298 V +RE +SKI+SGQV V NHQF+QISTSYPDP+VPF +DQK + +AME+DW R+AD+ L Sbjct: 263 VTNREKISKIVSGQVMVENHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLC 322 Query: 299 LIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNL 358 L+W+QD L ET++PETWVKSNPLL+L D++D LLKGL DKR+SDLL G + DFQTKNLN+ Sbjct: 323 LVWAQDDLSETFEPETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNM 382 Query: 359 WLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KF 414 WL+Q DSYLNL DVE A+ +F+I G +IG DYSM SDNTA++FV+PY D+G K+ Sbjct: 383 WLQQDVDSYLNLADVEKAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKW 442 Query: 415 HIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY--CTITAHPQGIINPEQIYKWLLNYVE 472 H+EQHSF+PFQ+AGSI+AKEKQDGI YR +Y CT+T+H QG+IN +++Y+W++NY+E Sbjct: 443 HVEQHSFVPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIE 502 Query: 473 QHQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKV 532 + L V FFGYD G + + + L NT + + I+QRTS L +PTKFLQ+LFV + Sbjct: 503 DNALDVIFFGYDAMG---ITKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSI 559 Query: 533 TIPNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNN 592 + +D +M+K+LLNAV++ D IGI VDK KATL+IDVVDAIIDAL+Q MY+F++ N+ Sbjct: 560 SRLDDKIMEKSLLNAVLREDSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMAND 619 Query: 593 KDTEIDRMTEQQVLDWFKNSKS 614 K +++ MT +QV +W + +S Sbjct: 620 KSWKVEHMTPEQVKEWVTSQES 641 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/623 (53%), Positives = 447/623 (71%), Gaps = 10/623 (1%) Query: 2 KIDLTQTHDVEGAFNSIDWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLR 61 KIDLT+T DV G++ SID+S I+ KY D T Y F VL+G +AGY I+LA FRHL DL+ Sbjct: 3 KIDLTKTKDVIGSYQSIDFSFIRKKYKDAGTRYCFDVLDGKIVAGYNIRLACFRHLRDLQ 62 Query: 62 RQGQPDFPYHYDVDEANRLLRFAKICPNVD-TGEPTKLMEWQEFTFALMFGWRDKDNNKR 120 RQG DFPY Y ++ NR L+F + PNVD + + M+WQ F F+ +F W D DN R Sbjct: 63 RQGNKDFPYVYSIEAFNRFLKFLSLVPNVDDLSQKLEPMDWQLFIFSQIFAWFDLDNVPR 122 Query: 121 FTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMR 180 F+ +I S+AR QGKT I + +S+LIE +G SNQD+LV+S+ F QTMKLF YV SMM Sbjct: 123 FSNIIISIARSQGKTMIAGICLNFSYLIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMA 182 Query: 181 KIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVK 240 +II+ EPFKS A E L + S +I + N + IS E+G++DS HF+ A+ DE+GE++ Sbjct: 183 RIIENEPFKSLAEETQLQLYSREIKSLLDANTINTISFESGKFDSKHFKLAVADEVGELR 242 Query: 241 SRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLI 300 + E +SKI SGQV +FI+ISTSY P VPFH++QK +I+ ME+D+ R D L LI Sbjct: 243 TDEGISKITSGQVNTEGSRFIEISTSYQTPDVPFHQEQKKLIEIMERDFDRSGDDQLCLI 302 Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WSQD+L+E +KPETW KSNPLL+ P+ ++ L+KGL +RD LL G ++DFQ KN+N WL Sbjct: 303 WSQDNLEEVFKPETWAKSNPLLNHPELKEGLMKGLLSERDKKLLMGKLADFQVKNMNCWL 362 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KFHI 416 ++S+L+L D+E+AV +F+I G V++G D SMFSDNTA+ FVYPY +DG K+H+ Sbjct: 363 LADSNSFLDLTDIENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHV 422 Query: 417 EQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQH 474 EQHSFIP+QQAGS+EAK +QDG+ YR+ E YCTIT+HPQG+INPE++Y+W +YVE + Sbjct: 423 EQHSFIPWQQAGSLEAKMEQDGVNYRDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDN 482 Query: 475 QLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTI 534 L V FFGYD G V I ++L NT + +M I+QRTS L +PTKFLQ LF+ +T Sbjct: 483 ALDVVFFGYDAMG---VSKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITR 539 Query: 535 PNDPVMQKALLNAVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKD 594 +D +M+KAL+NAVIK D IGI VDK K+T +IDVVDA+IDA Y AMY F++ + NN Sbjct: 540 LDDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDAMYAFEDYAITNNPT 599 Query: 595 TEIDRMTEQQVLDWFKNSKSGLL 617 +++ M+++ VL+W KN +SGLL Sbjct: 600 WKVEHMSQEAVLEWLKNPESGLL 622 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 448 bits (1153), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/369 (58%), Positives = 287/369 (77%), Gaps = 9/369 (2%) Query: 255 VSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPET 314 + N QFIQIST+YP+P+VPF EDQK++ QAME D RDAD+YL L+WSQD+LDE ++PET Sbjct: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 Query: 315 WVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVE 374 W KSNPLLDL +R+NL+KGL DKRDSDLL+GN++DFQ KN+N WL ++S+L+LKD+E Sbjct: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 Query: 375 DAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KFHIEQHSFIPFQQAGSI 430 +AV +F+I G V++G D SMFSDNTA+ FVYPY +DG K+HIEQHSFIP+QQAGS+ Sbjct: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 Query: 431 EAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGS 488 EAK +QDG+ YR+ + YCTIT+HPQG+INPE++Y+W ++YVE +QL V FFGYD + Sbjct: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYD---A 237 Query: 489 YQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV 548 I +SL NT++ +M I+QRTS L +PTKFLQ LF+ +T +D +M+KAL+NAV Sbjct: 238 MMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV 297 Query: 549 IKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTEIDRMTEQQVLDW 608 IK D IGI VDK K+T +IDVVDAIIDA Y MY F++ + NN +++ M+++ VL W Sbjct: 298 IKEDNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAW 357 Query: 609 FKNSKSGLL 617 KN +SGLL Sbjct: 358 LKNPESGLL 366 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/638 (38%), Positives = 364/638 (57%), Gaps = 35/638 (5%) Query: 3 IDLTQTHDVEGAFNSI--DWSDIKTKYHDPATLYAFSVLNGTK-LAGYKIKLASFRHLMD 59 D T D+ G D+ + KYHDP T YA+ V+ K + G ++LA RHL D Sbjct: 4 FDFTGVQDIRGYVKPYQSDYQGLFDKYHDPGTRYAYDVMFTNKYMTGRDVQLACIRHLND 63 Query: 60 LRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-TGEPTKLMEWQEFTFALMFGWRDKDNN 118 L R G DFPY Y+ D N + F+++ PN D T + + +WQ F + GWR DN Sbjct: 64 LLRIGNDDFPYQYNSDMVNAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTIDNG 123 Query: 119 KRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASM 178 RFT S+AR QGKT+ +IL+ + + + ++QD LVAS + + KLF V+ Sbjct: 124 TRFTTSNISIARQQGKTWLASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQ 183 Query: 179 MRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGE 238 + I+ + F A E + Q+ Q+I K N +R + + G +DS+H A++DEIG Sbjct: 184 AKTILSLPDFADDARERGVEAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGN 243 Query: 239 VKS--RETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSY 296 ++ ET+ +I SGQ + N F++IST+YPD V F D+ + A+E D RDAD+ Sbjct: 244 LRPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNV 303 Query: 297 LGLIWSQDSLDETYKPETWVKSNP-LLDL-PDQRDNLLKGLTDKRDSDLLTGNISDFQTK 354 +I++QDS DE ++PETW KSNP LL+L +RDNL K L R+ + G + F K Sbjct: 304 FQVIYAQDSEDEVFEPETWAKSNPNLLELQKSKRDNLQKALNQDRNDNEREGTLETFVNK 363 Query: 355 NLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGK- 413 +LNLW ++ +SYL+L +++ ++ + F+++G +VFIGFD S +DNT+ F+YPY D Sbjct: 364 SLNLWSRRFQNSYLSLDNIQRSIIDHFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDK 423 Query: 414 --FHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLN 469 FH++QHSFIPF QA +IEAK KQDG+ Y + + IT G+IN EQ+Y+WL++ Sbjct: 424 HMFHVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTEQVYQWLVD 483 Query: 470 YVEQHQLKVKFFGYD-RFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFV 528 YV QH+LKVKF D G + K + + W + + L PTK Q LF+ Sbjct: 484 YVNQHRLKVKFIIADPNHGEWLEKKLE---HYQPQWQWFPLPPTSFKLNEPTKDFQNLFI 540 Query: 529 THKVTIPNDPVMQKALLNAVIKADKIG-IHVDK-DKATLQIDVVDAIIDALYQAMYYFDE 586 +T+ NDP++ L NAV+ D+ G + +D+ ++ + ID DA+I+A QA +YF+ Sbjct: 541 NGNITMLNDPLLIDGLNNAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFEN 600 Query: 587 NSD-----LNNKDTEIDRMTEQQVLDWFKNSKSGLLGG 619 D LN+ DT+ R D+FK + GG Sbjct: 601 YHDEGYNPLNDLDTQGKR-------DFFK----AMFGG 627 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 412 bits (1058), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/620 (38%), Positives = 358/620 (57%), Gaps = 33/620 (5%) Query: 19 DWSDIKTKYHDPATLYAFSVLNGTK-LAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEA 77 D+ + KYHDP T YA+ V+ K + G ++LA RHL DL R G DFPY Y D Sbjct: 23 DYQKLLDKYHDPGTRYAYDVMFTDKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYSSDMV 82 Query: 78 NRLLRFAKICPNVD-TGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTY 136 N + F+++ PN D T + + +WQ F + GWR DN RFT S+AR QGKT+ Sbjct: 83 NAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTVDNGTRFTTSNISIARQQGKTW 142 Query: 137 QMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVN 196 +IL+ + + + ++QD LVAS + + KLF V+ + I+ + F A E Sbjct: 143 LASILINFYYFVVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPEFADDARERG 202 Query: 197 LYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKS--RETVSKIISGQVK 254 + Q+ Q+I K N +R + + G +DS+H A++DEIG ++ ET+ +I SGQ Sbjct: 203 VEAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNG 262 Query: 255 VSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPET 314 + N F++IST+YPD V F D+ + A+E D RDAD+ +I+SQDS DE ++PET Sbjct: 263 IKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPET 322 Query: 315 WVKSNP-LLDLP-DQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKD 372 W KSNP LL+LP +RDNL L R+ + G + F K+LNLW ++ +SYL+L + Sbjct: 323 WAKSNPNLLELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDN 382 Query: 373 VEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGK---FHIEQHSFIPFQQAGS 429 ++ ++ + F+++G +VFIGFD S +DNT+ F+YPY D FH++QHSFIPF QA + Sbjct: 383 IQRSIIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKT 442 Query: 430 IEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYD-RF 486 IEAK KQDG+ Y + + IT G+IN +Q+Y+WL++YV QH+LKVKF D Sbjct: 443 IEAKSKQDGLDYLKLQDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFIIADPNH 502 Query: 487 GSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLN 546 G + K + + W + + L PTK Q LF+ +++ NDP++ L N Sbjct: 503 GEWLEKKLE---HYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNISMLNDPLLIDGLNN 559 Query: 547 AVIKADKIG-IHVDK-DKATLQIDVVDAIIDALYQAMYYFDENSD-----LNNKDTEIDR 599 AV+ D+ G + +D+ ++ + ID DA+I+A QA +YF+ D LN+ DT+ R Sbjct: 560 AVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFENYHDEGYNPLNDLDTQGKR 619 Query: 600 MTEQQVLDWFKNSKSGLLGG 619 D+FK + GG Sbjct: 620 -------DFFK----AMFGG 628 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 390 bits (1002), Expect = e-110, Method: Compositional matrix adjust. Identities = 233/610 (38%), Positives = 364/610 (59%), Gaps = 23/610 (3%) Query: 19 DWSDIKTKY-HDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPD-FPYHYDVDE 76 ++ D+ +Y DPA YA VL+GT ++G KIK A RH+ DLRR + D F Y YD ++ Sbjct: 3 NYKDLTERYPDDPALSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQ 62 Query: 77 ANRLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDN-NKRFTRVIDSVARGQGKT 135 A +++ F+ + +V +GEP + +Q+F A + GWR+ + RF + S+AR GKT Sbjct: 63 AKKIVEFSTLLKDVTSGEPFEASPYQKFILASVQGWRNPETKGMRFKTIFISMARTNGKT 122 Query: 136 YQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEP--FKSYAN 193 +A Y+FL S + N+ V+SI+ T LF Y M IQ++ FK A Sbjct: 123 QVLATYALYNFLFGSPKI-NRQLAVSSIDIAHTHNLFNY---MRFNWIQLKDGVFKKLAK 178 Query: 194 EVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDE---IGEVKSRETVSKIIS 250 +++ S + +KK + V++ +S + DS H+ T I DE G+ K R+ +S + S Sbjct: 179 ALDINDNSQVMEIKKQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQ-KQRDFISSMTS 237 Query: 251 GQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQ-DWKRDADSYLGLIWSQDSLDET 309 G V Q IST+ DPTVP ED K + +E DW ++ L LIW QDS DE Sbjct: 238 GMVNNPLAQMFFISTAGVDPTVPMFEDYKRYSKMLESGDWS-SSEKDLVLIWEQDSEDEA 296 Query: 310 YKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLN 369 Y ETW KSNPL+++ R NL +G+ +RDS G I DF KN+NLW ++YL Sbjct: 297 YLIETWPKSNPLMEIESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNAYLP 356 Query: 370 LKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGS 429 L V+DA+ ++F+ G +VFIGFDYS +D+T+L+FV+P+ KFH+ QHS+IP +AGS Sbjct: 357 LDLVQDAIVDEFDYFGRDVFIGFDYSQTNDDTSLAFVFPHSGSKFHLYQHSWIPIAKAGS 416 Query: 430 IEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFG 487 IEAKE++D I YR E + TIT G+I+ ++++ W+LN++E+++L+VK YD++G Sbjct: 417 IEAKEQRDNIDYRAVQEKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYDQWG 476 Query: 488 SYQVKNITESLN-VNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLN 546 + N L+ V ++ ++ ++Q +L PTKFLQ F+ H +T+ +D + + L+N Sbjct: 477 T---GNFIRRLDEVKEEYLLIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVN 533 Query: 547 AVIKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTE--IDRMTEQQ 604 AV +D GI +DK+ + +ID DAI++ALY+ +YF++ +++ K T M +++ Sbjct: 534 AVTVSDNNGIKLDKNVNSQKIDAADAIVNALYEGQFYFNDFTNVEEKKTNSPFGNMNDEE 593 Query: 605 VLDWFKNSKS 614 + D+F N S Sbjct: 594 ISDYFINGFS 603 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 234 bits (597), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/549 (28%), Positives = 286/549 (52%), Gaps = 28/549 (5%) Query: 38 VLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTK 97 VL+G + + LA RH DL+R D+ +HYD + A + ++F +I P +G+P Sbjct: 8 VLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEPKSGKPQP 64 Query: 98 LMEWQEFTFALMFGWRDKD--NNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSN 155 L +Q+F ++GW DKD N +RFT V S+AR GK+ ++ ++ Y FL + Sbjct: 65 LAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANK 124 Query: 156 QDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRA 215 + A+ + KQ +FG V +R +++ +P + + I D+++ + + +R+ Sbjct: 125 RQLYTAANDRKQAGIVFGMVKDRLRALMRKDP----GIKRMVKITRDELVNLDDGSTIRS 180 Query: 216 ISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFH 275 S + G D Y A+ DE K+ + + + SGQV + ++ IST+ D VP Sbjct: 181 FSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMF 240 Query: 276 EDQ----KMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNL 331 + K ++ E+ A+ Y I QD++ E P +W+KSNPLLD+ + Sbjct: 241 QQNYPYAKKVLSGEEK-----AERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDTLHSQI 295 Query: 332 LKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDF-NIDGHEVFI 390 LT K G+++ KN N+W + + DSYL+ + A D +I G +I Sbjct: 296 SDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTDKPDIRGQRAWI 355 Query: 391 GFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY--C 448 G D SD A+S++ P +G + ++ ++F+ G I+ K K D I Y ++ Sbjct: 356 GIDVGRTSDLFAISWLIP-QEGWWWLDGYAFV--ASKGGIDNKIKTDRIDYLAAEQHGEG 412 Query: 449 TITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVN-TDWYIM 507 I++ GII+ +++Y+WL +++E++ + V+ YD YQ + ++ N +W ++ Sbjct: 413 EISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYD---PYQFGPMLTAIEKNHPEWPMV 469 Query: 508 DIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIGIHVDKDKATLQI 567 ++Q T L+ PTK ++ + ++ ++ +MQ A +NAV+ +D G+ ++K+K +I Sbjct: 470 QVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKI 529 Query: 568 DVVDAIIDA 576 D++DA +DA Sbjct: 530 DMIDATLDA 538 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 219 bits (558), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 167/571 (29%), Positives = 283/571 (49%), Gaps = 21/571 (3%) Query: 19 DWSDIKTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEAN 78 D+S I Y D A YA V++ + K+ A RHL DL+R DF + Y ++A Sbjct: 6 DYSAIGDIYKDDAFYYAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAA 65 Query: 79 RLLRFAKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNN--KRFTRVIDSVARGQGKTY 136 + F +I P+V TG+P L +Q+F ++GWR K ++ +RF + + SVAR GKT Sbjct: 66 DPINFIEILPDVKTGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTI 125 Query: 137 QMAILVCYSFLI-ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEV 195 +A ++ Y FL + +S Q L + N + K+ M +K + K Sbjct: 126 LIAGILLYEFLFGHNPSMSRQ--LFCTANDRTQAKI---AWDMAKKQLSSLRAKDVDVRK 180 Query: 196 NLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKV 255 I D++ + + +RA+S + G D + + DE K+ E + + SGQ ++ Sbjct: 181 ATKIVRDELKNLHDESYIRALSRDTGAVDGFEPYVGVLDEFAASKTNEMLELLESGQGQL 240 Query: 256 SNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETW 315 N + IST+ D VP H + I + D + + Y G + QD+ +E W Sbjct: 241 DNPFILIISTAGMDLNVPMHTIEYPYITKI-LDGEITDEGYFGYVAEQDNEEEIKDESNW 299 Query: 316 VKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVED 375 +KSNP+L++ D L+ L +R L TG I+ KN N+W + S +SY++ + E Sbjct: 300 IKSNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWEL 359 Query: 376 AVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEK 435 A + + V++G D SD A+S V DD ++++ SF+ + + AKEK Sbjct: 360 AQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDD-YWYLDSFSFVATKYG--LTAKEK 416 Query: 436 QDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYD--RFGSYQV 491 +DG++Y N YC IT G+I+ E++ + + V ++ +V +D +FG+ Sbjct: 417 RDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL-- 474 Query: 492 KNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKA 551 +T + +W ++++ Q T L PTK ++ K+ +P++ A+ NA IK Sbjct: 475 --LTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKT 532 Query: 552 DKIGIHVDKDKATLQIDVVDAIIDALYQAMY 582 D G+ +DK+K + +ID +DA +D Y Y Sbjct: 533 DNNGMRIDKNKNSNKIDPLDAALDG-YAVCY 562 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 196 bits (499), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 150/568 (26%), Positives = 284/568 (50%), Gaps = 43/568 (7%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPN---V 90 YA V++G +A K K A R L D+ R + DFPY++D +E R R+A++ + + Sbjct: 12 YAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARMFKHNKGI 71 Query: 91 DTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 G+P +L ++Q F +FGW+ K+N +RF + +AR K+ +A++ Y + Sbjct: 72 LAGQPIELTDFQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIASYECFLS 131 Query: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRK--IIQIEPFKSYANEVNLYIQSDQIIMK 207 + +A +Q+ ++ V + ++ +++ + SY +I K Sbjct: 132 P---EQSEVYIAGWGREQSSIVYNEVLAQVQACDLLKGKYTDSYG----------RIRHK 178 Query: 208 KNNNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS 266 K+ ++++ +S EA + D + A+ DE ++ E ++SG V N + I+T+ Sbjct: 179 KSGSIIQPLSKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIITTA 238 Query: 267 YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPD 326 + P + + + + + ++ + + Y +I D D+ WVK+NP++ + Sbjct: 239 GFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIVATYE 298 Query: 327 QRDNLLKGLTDKRDSDLLTG-----NISDFQTKNLNLWLKQSTDSYLNL-KDVEDAVYND 380 + N L+ S+L T + F TKN+N+W+ Q + YL L K A+ Sbjct: 299 EGMNFLR-------SELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQ 351 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGIT 440 ++D + ++G D SM D T++S + P DDG+F++ HSFIP ++ K + D + Sbjct: 352 IDLDVRDCYVGIDLSMRIDLTSVSGIVPMDDGRFYVWSHSFIP---EDTLAEKRRTDKVP 408 Query: 441 YRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNV 500 Y + + IT P +++ + I ++ E +K YD + + + E+ Sbjct: 409 YDLWVKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEA--- 465 Query: 501 NTDWYIM-DIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKAD-KIGIHV 558 + Y+M +I+Q L+ PTK +EL ++ K+ ++PV+ A+ NAV+K D I + Sbjct: 466 --EGYVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENIML 523 Query: 559 DKDKATLQIDVVDAIIDALYQAMYYFDE 586 DKDK+T +ID + A+I+A+ +A+ DE Sbjct: 524 DKDKSTGRIDPIAALINAMVRAILKSDE 551 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 182 bits (461), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 Query: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 N+ VAS +KQ +F + + + F +V D + Sbjct: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 Query: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 Query: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 Query: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 Query: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 Query: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 411 GEAETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 Query: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV-IKADKIGIHVDKDKAT 564 ++++ Q AL+ K + ++ ++ ++ ++ NAV I+ + + ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 +ID + +II A +A M+ F EN Sbjct: 529 QKIDPIISIITAFTEARMHEFQEN 552 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 180 bits (457), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 Query: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 N+ VAS +KQ +F + + + F +V D + Sbjct: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 Query: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 Query: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 Query: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 Query: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 Query: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 Query: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV-IKADKIGIHVDKDKAT 564 ++++ Q AL+ K + ++ ++ ++ ++ NAV I+ + + ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 +ID + +II A +A M+ F EN Sbjct: 529 QKIDPIISIITAFTEARMHEFQEN 552 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 180 bits (457), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 Query: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 N+ VAS +KQ +F + + + F +V D + Sbjct: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 Query: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 Query: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 Query: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 Query: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 Query: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 Query: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV-IKADKIGIHVDKDKAT 564 ++++ Q AL+ K + ++ ++ ++ ++ NAV I+ + + ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 +ID + +II A +A M+ F EN Sbjct: 529 QKIDPIISIITAFTEARMHEFQEN 552 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 180 bits (457), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 Query: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 N+ VAS +KQ +F + + + F +V D + Sbjct: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 Query: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 Query: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 Query: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 Query: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 Query: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 Query: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV-IKADKIGIHVDKDKAT 564 ++++ Q AL+ K + ++ ++ ++ ++ NAV I+ + + ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 +ID + +II A +A M+ F EN Sbjct: 529 QKIDPIISIITAFTEARMHEFQEN 552 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 180 bits (456), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 Query: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 N+ VAS +KQ +F + + + F +V D + Sbjct: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 Query: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 Query: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 Query: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 Query: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 Query: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 Query: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKAD-KIGIHVDKDKAT 564 ++++ Q AL+ K + ++ ++ ++ ++ NAV+ D + + ++K Sbjct: 469 LIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 +ID + +II A +A M+ F EN Sbjct: 529 QKIDPIISIITAFTEARMHEFQEN 552 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 180 bits (456), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 146/564 (25%), Positives = 262/564 (46%), Gaps = 19/564 (3%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA V++G LA K RHL + P H+D +N+ ++F ++ P Sbjct: 3 DYVTKYAKKVVSGEILASLKNIQVCKRHLSFME---NPPNGCHWDNHLSNKAIKFVEMLP 59 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLI 148 + T +P LME+Q+F ++GWR + + FT+ S+AR QGK+ ++ + L Sbjct: 60 DPKTNQPMPLMEFQKFIVGSLYGWR-RGQYRMFTKAYISMARKQGKSLIVSGMSVNELLF 118 Query: 149 ESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKK 208 N+ VAS +KQ +F + + + F +V D + Sbjct: 119 GQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL---- 174 Query: 209 NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 +++V +S D AI DE+ + E S+ +G N + +ST+ Sbjct: 175 SSSVFAPLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAGD 234 Query: 269 DPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQR 328 + +++ K I + + ++ + AD+Y DS +E W+K+ PLL+ + R Sbjct: 235 NLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHR 292 Query: 329 DNLLKGLTDKRDSDLLTG-NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE 387 +L+ + +L G + KN NLW Q DS L++ D E + NI+G + Sbjct: 293 KTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMPNINGKD 352 Query: 388 VFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEY 447 V+IG D S D T++ F++P DD K + HSFI + ++E K K+D I Y E Sbjct: 353 VYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLR--TNLEQKSKRDKINYELAIER 410 Query: 448 --CTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 T G+I+ +Q+ +++ ++ H L V+ YD + + ES+ + DW Sbjct: 411 GEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMAL--DWP 468 Query: 506 IMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKAD-KIGIHVDKDKAT 564 ++++ Q AL+ K + ++ ++ ++ ++ NAV+ D + + ++K Sbjct: 469 LIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 565 LQIDVVDAIIDALYQA-MYYFDEN 587 +ID + +II A +A M+ F EN Sbjct: 529 QKIDPIISIITAFTEARMHEFQEN 552 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 150 bits (380), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 146/577 (25%), Positives = 267/577 (46%), Gaps = 45/577 (7%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 Y +LNG + K + A R + D D P+++D + A FAK +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 92 -TGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 GE +L ++Q F A +FG++ K N +RF +V +AR K+ +AI+ + + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFL- 129 Query: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIE-PFKSYANEVNLYIQSDQIIMKK 208 G Q +A Q+ +++ V + + +E +K + + ++ K Sbjct: 130 --GDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF---------K 178 Query: 209 NNNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSY 267 N +V+ +S EA + D + I DE ++ E + SG V I+T+ Sbjct: 179 NGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAG 238 Query: 268 PDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 D + P + + + + ++ + D Y +I + D+ W+K+NP++ ++ Sbjct: 239 FDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEE 298 Query: 328 RDNLLKGLTDKRDSDLLTG-----NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFN 382 GL R SDL + F TKN+N+W+ + + Y+++ + + F+ Sbjct: 299 ------GLEGIR-SDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFD 351 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYR 442 G ++IG D SM +D T++ +V D+G F + QHSF+P ++ K D + Y Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP---EARLKEKMAIDKVRYD 408 Query: 443 NYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNT 502 + E +T P +++ + W+ N+ + +++ F YD++ + + E N Sbjct: 409 LWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQNLE----NK 462 Query: 503 DWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKA-DKIGIHVDKD 561 + ++I QR + L+ PTK +E KV DPV+ AL NAV+K D+ I + K Sbjct: 463 GFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKK 522 Query: 562 KATLQIDVVDAIIDALYQAMY----YFDENSDLNNKD 594 + +ID A+++A +AMY FD S+ NKD Sbjct: 523 ISKNRIDPAAAVLNAFSRAMYGASVRFDV-SEFANKD 558 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 150 bits (380), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 146/577 (25%), Positives = 267/577 (46%), Gaps = 45/577 (7%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 Y +LNG + K + A R + D D P+++D + A FAK +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 92 -TGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 GE +L ++Q F A +FG++ K N +RF +V +AR K+ +AI+ + + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFL- 129 Query: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIE-PFKSYANEVNLYIQSDQIIMKK 208 G Q +A Q+ +++ V + + +E +K + + ++ K Sbjct: 130 --GDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF---------K 178 Query: 209 NNNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSY 267 N +V+ +S EA + D + I DE ++ E + SG V I+T+ Sbjct: 179 NGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAG 238 Query: 268 PDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 D + P + + + + ++ + D Y +I + D+ W+K+NP++ ++ Sbjct: 239 FDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEE 298 Query: 328 RDNLLKGLTDKRDSDLLTG-----NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFN 382 GL R SDL + F TKN+N+W+ + + Y+++ + + F+ Sbjct: 299 ------GLEGIR-SDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTFD 351 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYR 442 G ++IG D SM +D T++ +V D+G F + QHSF+P ++ K D + Y Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP---EARLKEKMAIDKVRYD 408 Query: 443 NYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNT 502 + E +T P +++ + W+ N+ + +++ F YD++ + + E N Sbjct: 409 LWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQNLE----NK 462 Query: 503 DWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKA-DKIGIHVDKD 561 + ++I QR + L+ PTK +E KV DPV+ AL NAV+K D+ I + K Sbjct: 463 GFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKK 522 Query: 562 KATLQIDVVDAIIDALYQAMY----YFDENSDLNNKD 594 + +ID A+++A +AMY FD S+ NKD Sbjct: 523 ISKNRIDPAAAVLNAFARAMYGASVRFDV-SEFANKD 558 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 148 bits (374), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 145/577 (25%), Positives = 266/577 (46%), Gaps = 45/577 (7%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 Y +LNG + K + A R + D D P+++D + A FAK +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 92 -TGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 GE +L ++Q F A +FG++ K N +RF +V +AR K+ +AI+ + + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFL- 129 Query: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIE-PFKSYANEVNLYIQSDQIIMKK 208 G Q +A Q+ +++ V + + +E +K + + ++ K Sbjct: 130 --GDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF---------K 178 Query: 209 NNNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSY 267 N +V+ +S EA + D + I DE ++ E + SG V I+T+ Sbjct: 179 NGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAG 238 Query: 268 PDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 D + P + + + + ++ + D Y +I + D+ W+K+NP++ ++ Sbjct: 239 FDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEE 298 Query: 328 RDNLLKGLTDKRDSDLLTG-----NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFN 382 GL R SDL + F TKN+N+W+ + + Y+++ + + + Sbjct: 299 ------GLEGIR-SDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTLD 351 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYR 442 G ++IG D SM +D T++ +V D+G F + QHSF+P ++ K D + Y Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP---EARLKEKMAIDKVRYD 408 Query: 443 NYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNT 502 + E +T P +++ + W+ N+ + +++ F YD++ + + E N Sbjct: 409 LWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQNLE----NK 462 Query: 503 DWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKA-DKIGIHVDKD 561 + ++I QR + L+ PTK +E KV DPV+ AL NAV+K D+ I + K Sbjct: 463 GFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKK 522 Query: 562 KATLQIDVVDAIIDALYQAMY----YFDENSDLNNKD 594 + +ID A+++A +AMY FD S+ NKD Sbjct: 523 ISKNRIDPAAAVLNAFARAMYGASVRFDV-SEFANKD 558 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 148 bits (373), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 145/577 (25%), Positives = 266/577 (46%), Gaps = 45/577 (7%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 Y +LNG + K + A R + D D P+++D + A FAK +V+ Sbjct: 11 YCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFKHVEGI 70 Query: 92 -TGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 GE +L ++Q F A +FG++ K N +RF +V +AR K+ +AI+ + + Sbjct: 71 LAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIVAAFCTFL- 129 Query: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIE-PFKSYANEVNLYIQSDQIIMKK 208 G Q +A Q+ +++ V + + +E +K + + ++ K Sbjct: 130 --GDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIF---------K 178 Query: 209 NNNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSY 267 N +V+ +S EA + D + I DE ++ E + SG V I+T+ Sbjct: 179 NGSVVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAG 238 Query: 268 PDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 D + P + + + + ++ + D Y +I + D+ W+K+NP++ ++ Sbjct: 239 FDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEE 298 Query: 328 RDNLLKGLTDKRDSDLLTG-----NISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFN 382 GL R SDL + F TKN+N+W+ + + Y+++ + + + Sbjct: 299 ------GLEGIR-SDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTXD 351 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYR 442 G ++IG D SM +D T++ +V D+G F + QHSF+P ++ K D + Y Sbjct: 352 FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP---EARLKEKMAIDKVRYD 408 Query: 443 NYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNT 502 + E +T P +++ + W+ N+ + +++ F YD++ + + E N Sbjct: 409 LWAEQGYLTLTPGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHLAQNLE----NK 462 Query: 503 DWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKA-DKIGIHVDKD 561 + ++I QR + L+ PTK +E KV DPV+ AL NAV+K D+ I + K Sbjct: 463 GFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKK 522 Query: 562 KATLQIDVVDAIIDALYQAMY----YFDENSDLNNKD 594 + +ID A+++A +AMY FD S+ NKD Sbjct: 523 ISKNRIDPAAAVLNAFXRAMYGASVRFDV-SEFANKD 558 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 140 bits (353), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 160/604 (26%), Positives = 269/604 (44%), Gaps = 54/604 (8%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D T YA VL G ++AG +KLA RH+ DL R + Y +D+++A + F + Sbjct: 3 DRVTRYAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLR 62 Query: 89 NVD---TGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCY 144 D G+ KL +Q+F +FGW K +RF + +AR K Sbjct: 63 FTDGEIAGQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQLARKNAK---------- 112 Query: 145 SFLIESVGL---SNQDYLVASINFKQT-MKLFGYVASMMRKIIQIEPFKSYANEVNLYIQ 200 S L +G+ + Y A + T MK V RK I+IEP E+ Sbjct: 113 SLLNSGIGIKLAAFDKYPNAQVYCTATKMKQARIVWKQARKFIEIEP---DLREIFKIKD 169 Query: 201 SDQIIMKK-NNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQ 259 D II N + A+ + G D + I DE K+ + V + G V + Sbjct: 170 HDAIIESLINGGEIMALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESL 229 Query: 260 FIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSN 319 I+T+ + P +++ + +E + D Y I D D+ + P W+K+N Sbjct: 230 ISIITTAGFNLNGPCYKEWEYCKNVLEG--IVNNDEYFIYIAQMDVEDDIWDPNNWLKAN 287 Query: 320 PLL-DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYL--NLKDVEDA 376 PL+ LP +NL + + + ++ +F TK+LN+W + S D Y+ ++ V + Sbjct: 288 PLVAKLPKGLENLKRFAEESKQKG--GDDLKNFLTKSLNIWYEFSNDQYIGPSVWKVGAS 345 Query: 377 VYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY----DDG----KFHIEQHSFIPFQQAG 428 N G + G D S D T+L+ ++PY ++G K+ I HSFIP ++ Sbjct: 346 KLTLENFKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIPKRR-- 403 Query: 429 SIEAKEKQDGITYRNYPE--YCTITAHPQGI-INPEQIYKWLLNYVEQHQLKVKFFGYDR 485 + + D + Y + E T+T GI + + I K+L + +E+ QLK+ GYD Sbjct: 404 -VAEHIQSDDVPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDP 462 Query: 486 FGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTK-FLQELFVTHKVTIPNDPVMQKAL 544 + E L + ++I Q L +PT+ F E + + ++ ++ Sbjct: 463 HNADTFLQDLEELGFDC----VEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSV 518 Query: 545 LNAVIKADKIG-IHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTEIDRMTEQ 603 +NA + ++ G I +DK+ +ID VDA+IDA A ++ LN K +I++ E+ Sbjct: 519 VNAKLVSNSNGEIKIDKNLQEKRIDPVDAVIDAYKLAF----KSEKLNTK-VDINKYAEK 573 Query: 604 QVLD 607 L+ Sbjct: 574 DFLN 577 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 143/588 (24%), Positives = 256/588 (43%), Gaps = 63/588 (10%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKIC---PNV 90 Y+ S+L+G A + K A R L DL R DF Y++D +EA R++++ C V Sbjct: 12 YSNSILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHSKGV 71 Query: 91 DTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 G+P L W +F + W+ KD N +RF VAR K+ A + Y I Sbjct: 72 LEGKPIILNSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEAGMAGYE--IG 129 Query: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKN 209 + G + + + Q +F M K P K I KK+ Sbjct: 130 AKGYNAAEVYTLGVERDQAKIVFEEWELMASK-----PLKK-----RFKFTQKVIKHKKS 179 Query: 210 NNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 N+ ++ +S +AG+ D + + A+ DE + + + SG + + + I+T+ Sbjct: 180 NSFIKHLSKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAGE 239 Query: 269 D--PTVPFHE--DQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDL 324 D T ++E D I+ ++ + Y +I + D+ + + W+K+NP+L Sbjct: 240 DYEETACYYEYLDCCSILDGTFEN-----EKYFVMICELEDEDDPFDEKAWIKANPVLCT 294 Query: 325 PDQRDNLLKGLTDKRDSDLLTGNIS------DFQTKNLNLWLKQSTDSYLNLKDVE--DA 376 ++ G+ R + L N S +F TKN N+++ Y+ DVE A Sbjct: 295 YEE------GIESMRQNANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYV---DVEFWKA 345 Query: 377 VYNDFNID---GHEVFIGFDYSMFSDNTALSFVYPY-DDG--KFHIEQHSFIPFQQAGSI 430 + ++ GH+ +IG D S D T+++F +PY D+G K+ + SFIP A + Sbjct: 346 CKENITLEKFRGHDCYIGMDLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFIP---AEVV 402 Query: 431 EAKEKQDGITYRNYPE-----YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDR 485 + K K D + Y + A+ I++ I + + V++++L V YD Sbjct: 403 KEKMKTDNVPYNIWSSKEKGWLIKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSYDP 462 Query: 486 FGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALL 545 G+ + + E + N ++ Q + L T ++L ++ + +M + Sbjct: 463 HGAAMLVSELERRDYNC----VECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQ 518 Query: 546 NAVIKADKIG-IHVDKDKATLQIDVVDAIIDALYQAMYYFD-ENSDLN 591 NA + G I + K +ID + + I A +AM Y++ EN D++ Sbjct: 519 NAEKDTNSFGEIKISKKSRFKRIDPLASCIFAHNRAMTYWNRENLDVS 566 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 113 bits (282), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 131/581 (22%), Positives = 250/581 (43%), Gaps = 47/581 (8%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQ-GQPDFPYHYDVDEANRLLRFAKICPN 89 A YA +L+G LAG IKLA RHL DL+ ++PY +D D A R F ++ P+ Sbjct: 10 AQQYARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPH 69 Query: 90 VD---TGEPTKLMEWQEFTFALMFGWRDKDNNK-RFTRVIDSVARGQGKTYQMAILVCYS 145 G+ K WQ F F+ +FGW K K RF V R GK++ A + Y Sbjct: 70 SSGDLKGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYM 129 Query: 146 FLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQII 205 F + G + + + Q K+F AS M K++ + N+ + ++++ Sbjct: 130 FCAD--GENAAEVYCGATKMAQAKKVF-TPASQMAKLLP-----DLRSRFNVSVWAEKLT 181 Query: 206 MKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST 265 +++ +V + G DS AI DE E + S + +G S + I+T Sbjct: 182 -REDGSVFAPVVGNPGDGDSP--SCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITT 238 Query: 266 SYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLP 325 + D P ++ + Q +++ + G+I+ D+LD P +K+NP L + Sbjct: 239 AGKDIESPCYDKDNEVKQCLDKMLPN--ERLFGMIYELDALDNWQDPCNLIKANPNLGVS 296 Query: 326 DQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNL---KDVEDAVYNDFN 382 ++L++ L + +T +D +TK+LN+W+ T ++ N+ ED N Sbjct: 297 VFYEDLVEKLHLAKTVPRMT---NDIKTKHLNMWVSGKT-AFFNMDHWAKAEDKNLKLSN 352 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH---IEQHSFIPFQQAGSIEAKEKQDG 438 G E +G D + D A V+ + +GK H + ++P SI+ K + Sbjct: 353 FKGEESHLGLDLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAK-- 410 Query: 439 ITYRNYPEYCTITAHPQGIINP--------EQIYKWLLNYVEQHQLKVKFFGYDRFGSYQ 490 T + Y ++ + ++N +I +++ E+ +++ D G+ Sbjct: 411 -TAKRYQKWVNMQWAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATA 469 Query: 491 VKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV-- 548 + + + + ++I+Q + ++ P K L+ + +P++ + N + Sbjct: 470 LSHEL----ADNGFEPINIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGT 525 Query: 549 -IKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENS 588 + + K +ID A++ A+ +AM + ++S Sbjct: 526 FVPGSDDRVRPTKGDKQSKIDGATALLMAIGRAMLHGQDSS 566 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 112 bits (280), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 124/575 (21%), Positives = 245/575 (42%), Gaps = 57/575 (9%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNV 90 A YA +++G +A I+LA RH DL++ ++PY +D D A R +F ++ P+ Sbjct: 10 ANKYARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQLLPHS 69 Query: 91 D---TGEPTKLMEWQEFTFALMFGW-RDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSF 146 G+ KL WQ F F +FGW KD +RF VAR GK++ A + Y+F Sbjct: 70 SGELAGQKLKLEPWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIYTF 129 Query: 147 LIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIM 206 + G ++ + + Q K+F M ++ + + ++ + +D + Sbjct: 130 CAD--GENSAEVYCGATTMAQAKKVFTPARQMASRLPALR------SRFDISVWTDSLT- 180 Query: 207 KKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS 266 + + +V ++ + G DS H AI DE E + + G S + I+T+ Sbjct: 181 RPDGSVFAPMAGKPGDGDSPH--CAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTA 238 Query: 267 YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPD 326 P ++ K + +A+E + G+I+ D D+ P+ +K+NP L++ Sbjct: 239 GSSLESPCYDKDKEVKEAIEGITCN--ERLFGMIYELDVGDDWTDPKNLIKANPNLNVSV 296 Query: 327 QRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL------------KQSTDSYLNLKDVE 374 + +L++ L + + ++ F+TK LN+W+ K + D L L+D Sbjct: 297 KYSDLVELLEVAKQ---VPRKVNAFKTKRLNIWVSGKSAFYNMEQWKAAEDKNLKLEDFA 353 Query: 375 DAVYNDFNIDGHEVFIGFDYSMFSD-NTALSFVYPYDDGKFH---IEQHSFIPFQQAGSI 430 + N +G D + D N + +GK H I+ ++P + Sbjct: 354 NDTCN----------VGLDLAKKLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTT 403 Query: 431 EAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQ 490 + K + Y+ + E + A + +I +L+ Q + ++ D G+ Sbjct: 404 DPKLLKTADRYQKFYEMGALEATDGAEADYREILASILDM--QGENRIDEIDIDPAGATA 461 Query: 491 VKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIK 550 +++ E + ++DI+Q + ++ K L+ + +P++ + N + K Sbjct: 462 LRHQLEDYG----FTVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGK 517 Query: 551 ----ADKIGIHVDKDKATLQIDVVDAIIDALYQAM 581 +D + + K +ID A+ +A+ +AM Sbjct: 518 FIPGSDDL-VRPTKGDNQSKIDGATALFNAMTRAM 551 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 110 bits (276), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 134/580 (23%), Positives = 243/580 (41%), Gaps = 50/580 (8%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNV 90 A YA V+ G + LA RHL DL + ++P+ +D D+A R+ +F ++ P+ Sbjct: 6 ANQYARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHT 65 Query: 91 DTGE------PTKLMEWQEFTFALMFGW-RDKDNNKRFTRVIDSVARGQGKTYQMAILVC 143 GE P L WQ F ++FGW R K +RF + + R GK+ A + Sbjct: 66 -KGEWAFKRMPITLEPWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGL 124 Query: 144 YSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQ 203 Y F + + Y A+ KQ ++F M ++ EP + A + ++ QS Sbjct: 125 YMFACDD-EFGAEVYSGATTE-KQAWEVFRPARLMAQR---TEPLRE-AFGIEVHAQS-- 176 Query: 204 IIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQI 263 M + + R L D A+ DE E ++ + +G I Sbjct: 177 --MSRPEDGARFEPLIGDPGDGASPSCALIDEYHEHQTDALYQTMQTGMGARRQPLIFGI 234 Query: 264 STSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLD 323 +T+ + P ++ ++ +I+ +E D G+I++ D D+ P K+NP + Sbjct: 235 TTAGYNIEGPCYDKRREVIEMLEGIVPN--DELFGIIYTIDDGDDWTDPAVLRKANPNMG 292 Query: 324 LPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNL---KDVEDAVYND 380 + D L L+ +R + + F+TK+LN+W+ + D++ NL + ED Sbjct: 293 ISVYSDYL---LSQQRAAINNPRKVGVFKTKHLNIWVA-AKDAFFNLVNWQKCEDRSLTL 348 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH---IEQHSFIPFQQAGSIEAKEKQ 436 +GH + FD + D A+ ++ + DGK H + F+P+ S + + + Sbjct: 349 ERFEGHTCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSR 408 Query: 437 DGITYRNYPEYCTITAHPQGIINPEQIYKWL-----LNYVEQHQLKVKFFGYDRFGSYQV 491 Y+ + E IT I+ +I + LN VE+ + D G+ + Sbjct: 409 TAERYQKWVEGGFITVTDGAEIDYREILESAKEANRLNAVEESPI-------DPHGATNL 461 Query: 492 KNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV--- 548 + N+N + I Q + +++P K L+ + +PVM + N + Sbjct: 462 SHHLADENLNP----ITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKH 517 Query: 549 IKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENS 588 I D + K +ID A+I A+ + M + E++ Sbjct: 518 IPGDDDVVRPIKQGNENKIDGAVALIMAIGRCMLFEKEDT 557 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 103 bits (257), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 123/535 (22%), Positives = 233/535 (43%), Gaps = 45/535 (8%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF-AKIC-P 88 T YA V G +K RHL L G+ + +D + A+R +RF K C P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKP 70 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFL 147 + + L WQ F +FGW K+ +RF + + R GKT ++ + Y+ Sbjct: 71 SKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYA-- 128 Query: 148 IESVGLSNQD-YLVASINFKQTMKLFGYVASMMRKIIQIEP-FKSYANEVNLYIQSDQII 205 + G + + +L+A++ KQ LF +M++ +++ F++ +E I D I Sbjct: 129 VSQDGENGAEIHLLANV-MKQARILFDESKAMIKASPKLDKNFRTLRDE----IHYDATI 183 Query: 206 MKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST 265 K + + ++ + D + IFDEI E K + +S I + + I I+T Sbjct: 184 SK-----IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 266 S---YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL 322 + P V E + + + +D + + S D D+ W+K+NP L Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIED-----ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 323 DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVE--DAVYND 380 + D + + + + G DF TK N++ S+++ ++ + + + Sbjct: 294 GVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSL 350 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGIT 440 ++G IG+D S D TA + D+GK + HS+IP + + + I Sbjct: 351 EELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHK-----VEYSNEKIP 405 Query: 441 YRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNV 500 YR + E +T + I+ + + W++ E + V+ YDR ++++ ++ Sbjct: 406 YREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYV--VEKITYDRANAFKLNQELKNYGF 463 Query: 501 NTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG 555 T+ + +Q L+ K L+E+F+ K+ N+P+M+ + N +K D+ G Sbjct: 464 ETE----ETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNG 514 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 103 bits (257), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 123/535 (22%), Positives = 233/535 (43%), Gaps = 45/535 (8%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF-AKIC-P 88 T YA V G +K RHL L G+ + +D + A+R +RF K C P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKP 70 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFL 147 + + L WQ F +FGW K+ +RF + + R GKT ++ + Y+ Sbjct: 71 SKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYA-- 128 Query: 148 IESVGLSNQD-YLVASINFKQTMKLFGYVASMMRKIIQIEP-FKSYANEVNLYIQSDQII 205 + G + + +L+A++ KQ LF +M++ +++ F++ +E I D I Sbjct: 129 VSQDGENGAEIHLLANV-MKQARILFDESKAMIKASPKLDKNFRTLRDE----IHYDATI 183 Query: 206 MKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST 265 K + + ++ + D + IFDEI E K + +S I + + I I+T Sbjct: 184 SK-----IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 266 S---YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL 322 + P V E + + + +D + + S D D+ W+K+NP L Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIED-----ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 323 DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVE--DAVYND 380 + D + + + + G DF TK N++ S+++ ++ + + + Sbjct: 294 GVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSL 350 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGIT 440 ++G IG+D S D TA + D+GK + HS+IP + + + I Sbjct: 351 EELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHK-----VEYSNEKIP 405 Query: 441 YRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNV 500 YR + E +T + I+ + + W++ E + V+ YDR ++++ ++ Sbjct: 406 YREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYV--VEKITYDRANAFKLNQELKNYGF 463 Query: 501 NTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG 555 T+ + +Q L+ K L+E+F+ K+ N+P+M+ + N +K D+ G Sbjct: 464 ETE----ETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNG 514 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 102 bits (255), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 122/535 (22%), Positives = 233/535 (43%), Gaps = 45/535 (8%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF-AKIC-P 88 T YA V G ++ RHL L G+ + +D + A+R +RF K C P Sbjct: 15 TTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKP 70 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFL 147 + + L WQ F +FGW K+ +RF + + R GKT ++ + Y+ Sbjct: 71 SKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYA-- 128 Query: 148 IESVGLSNQD-YLVASINFKQTMKLFGYVASMMRKIIQIEP-FKSYANEVNLYIQSDQII 205 + G + + +L+A++ KQ LF +M++ +++ F++ +E I D I Sbjct: 129 VSQDGENGAEIHLLANV-MKQARILFDESKAMIKASPKLDKNFRTLRDE----IHYDATI 183 Query: 206 MKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST 265 K + + ++ + D + IFDEI E K + +S I + + I I+T Sbjct: 184 SK-----IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 266 S---YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL 322 + P V E + + + +D + + S D D+ W+K+NP L Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIED-----ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 323 DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVE--DAVYND 380 + D + + + + G DF TK N++ S+++ ++ + + + Sbjct: 294 GVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSL 350 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGIT 440 ++G IG+D S D TA + D+GK + HS+IP + + + I Sbjct: 351 EELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHK-----VEYSNEKIP 405 Query: 441 YRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNV 500 YR + E +T + I+ + + W++ E + V+ YDR ++++ ++ Sbjct: 406 YREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYV--VEKITYDRANAFKLNQELKNYGF 463 Query: 501 NTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG 555 T+ + +Q L+ K L+E+F+ K+ N+P+M+ + N +K D+ G Sbjct: 464 ETE----ETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNG 514 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 102 bits (254), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 124/535 (23%), Positives = 232/535 (43%), Gaps = 45/535 (8%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF-AKIC-P 88 T YA V G +K RHL L G+ + +D + A+R +RF K C P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKP 70 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFL 147 + + L WQ F +FGW K+ +RF + + R GKT ++ + Y+ Sbjct: 71 SKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYA-- 128 Query: 148 IESVGLSNQD-YLVASINFKQTMKLFGYVASMMRKIIQI-EPFKSYANEVNLYIQSDQII 205 + G + + +L+A++ KQ LF +M++ ++ E F+ +E I D I Sbjct: 129 VSQDGENGAEIHLLANV-MKQARILFDESKAMIKASPKLRENFRPLRDE----IHYDATI 183 Query: 206 MKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST 265 K + + ++ + D + IFDEI E K + +S I + + I I+T Sbjct: 184 SK-----IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 266 S---YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL 322 + P V E + + + +D + + S D D+ W+K+NP L Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIED-----ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 323 DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVE--DAVYND 380 + D + + + + G DF TK N++ S+++ ++ + + + Sbjct: 294 GVSIDLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQKNNEIISL 350 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGIT 440 ++G IG+D S D TA + D+GK + HS+IP + + + I Sbjct: 351 DELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHK-----VEYSNEKIP 405 Query: 441 YRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNV 500 YR + E +T + I+ + + W++ E + V+ YDR ++++ ++ Sbjct: 406 YREWEEDGLLTIQDKPYIDYQDVLNWIIKMNEHYV--VEKITYDRANAFKLNQELKNYGF 463 Query: 501 NTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG 555 T+ + +Q L+ K L+E+F+ K+ N+P+M+ + N +K D+ G Sbjct: 464 ETE----ETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNG 514 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 101 bits (251), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 126/570 (22%), Positives = 238/570 (41%), Gaps = 43/570 (7%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNV 90 A YA V+ G +A + A RHL DL + F Y +D D A R+ +F ++ P+ Sbjct: 12 ANQYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHT 71 Query: 91 DTGE------PTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVC 143 GE P L WQ F FGW +K + +RF V + R GK+ A + Sbjct: 72 -KGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGVAL 130 Query: 144 YSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQI-EPFKSYANEVNLYIQSD 202 Y F ++ + Y A+ KQ ++F M ++ + E F N N Sbjct: 131 YCFACDN-EFGAEVYSGATTE-KQAWEVFRPARLMCKRTPMLTEAFGIEVNASN------ 182 Query: 203 QIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQ 262 M + + R L D A+ DE E + + +++G Sbjct: 183 ---MNRPEDGARFEPLIGNPGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWA 239 Query: 263 ISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL 322 I+T+ + P ++ ++ +I+ + D G+I++ D D+ P+ K+NP + Sbjct: 240 ITTAGYNIEGPCYDKRREVIEMLNGSVPN--DELFGIIYTVDEGDDWTDPQVLEKANPNI 297 Query: 323 DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNL---KDVEDAVYN 379 + R+ LL +++ L N+ F+TK+LN+W+ + +Y NL + ED Sbjct: 298 GVSVYREFLLSQQQRAKNNARL-ANV--FKTKHLNIWV-SARSAYFNLVSWQSCEDKSLT 353 Query: 380 DFNIDGHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH---IEQHSFIPFQQAGSIEAKE- 434 +G + FD + D +++ +Y + DGK H + ++P+ S+E E Sbjct: 354 LEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNED 413 Query: 435 KQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNI 494 ++ ++ + E +T ++ Y+++L + K+ + + Sbjct: 414 RRTAERFQKWVEMGVLTVTDGAEVD----YRYILEEAKAAN-KISPVSESPIDPFGATGL 468 Query: 495 TESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIK---A 551 + L + D + I Q + +++P K L+ + + +P+M + N V K Sbjct: 469 SHDL-ADEDLNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPG 527 Query: 552 DKIGIHVDKDKATLQIDVVDAIIDALYQAM 581 + + K++A +ID A+I + +AM Sbjct: 528 NDDLVKPVKEQAENKIDGAVALIMTIGRAM 557 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 130/540 (24%), Positives = 232/540 (42%), Gaps = 55/540 (10%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF-AKIC-P 88 T YA V G +K RHL L G+ + +D + A+R +RF K C P Sbjct: 15 TTWYAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKP 70 Query: 89 NVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFL 147 + + L WQ F +FGW K+ +RF + + R GKT ++ + Y+ Sbjct: 71 SKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYA-- 128 Query: 148 IESVGLSNQD-YLVASINFKQTMKLFGYVASMMRKIIQI-EPFKSYANEVNLYIQSDQII 205 + G + + +L+A++ KQ LF +M++ ++ E F+ +E I D I Sbjct: 129 VSQDGENGAEIHLLANV-MKQARILFDESKAMIKASPKLRENFRPLRDE----IHYDATI 183 Query: 206 MKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST 265 K + + ++ + D + IFDEI E K + +S I + + I I+T Sbjct: 184 SK-----IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITT 238 Query: 266 S---YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL 322 + P V E + + + +D + + S D D+ W+K+NP L Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIED-----ERTFYYLASLDDDDDINDSSNWIKANPNL 293 Query: 323 ----DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLN---LKDVED 375 DL + ++ K KR D DF TK N++ S+++ L+ D Sbjct: 294 GVSIDLDEMKEEWEKA---KRTPD----ERGDFITKRFNIFANNDEMSFIDYPTLQKNND 346 Query: 376 AVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEK 435 + D ++G IG+D S D TA + D+GK + HS+IP + + Sbjct: 347 IISLD-ELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHK-----VEYS 400 Query: 436 QDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNIT 495 + I Y + E +T I+ + + W++ E + V+ YDR ++++ Sbjct: 401 NEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYV--VEKITYDRANAFKLNQEL 458 Query: 496 ESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG 555 ++ T+ + +Q L+ K L+E+F+ K+ N+P+M+ + N +K D+ G Sbjct: 459 KNYGFETE----ETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNG 514 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 97.4 bits (241), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 92/413 (22%), Positives = 186/413 (45%), Gaps = 26/413 (6%) Query: 55 RHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD---TGEPTKLMEWQEFTFALMFG 111 R D+ R + D PY++D + +++ +V+ G+P +L ++Q F A ++G Sbjct: 22 RFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAANIYG 81 Query: 112 WRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMK 170 + K+N +RF + +AR K+ +A++ Y +A + +Q+ + Sbjct: 82 FYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQ---EKHRVFIAGWSREQSDE 138 Query: 171 LFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQY-DSYHFR 229 ++ + + ++ + AN ++ K N++++ +S EA + D + Sbjct: 139 VYQAILEQLHHAPILKGKYTSAN--------GRVKKYKTNSIIQPLSREARKLGDGKNPS 190 Query: 230 TAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDW 289 I DE ++ E + SG V + I+T+ + P ++ + + ++ D Sbjct: 191 LGIVDEYHAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDI 250 Query: 290 KRDADSYLGLIWSQDSLDETYKPETWVKSNPLL-DLPDQRDNLLKGLTDKRDSDLLTGNI 348 + D Y +I D D+ W+K+NP++ P+ ++L L + + + Sbjct: 251 DTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALE---VPEKM 307 Query: 349 SDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYP 408 F TKN+N W+ Q + Y+ + ++ G V++G D SM +D T++ +V Sbjct: 308 RSFLTKNMNRWVDQKDNGYMKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYV-A 366 Query: 409 YDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIIN 459 DG F++ QHSF+P +A K D + Y + E + T T+ + IIN Sbjct: 367 VQDGFFYVGQHSFMPDARANE---KMATDKVPYDLWREMGFITYTSGEELIIN 416 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 127/584 (21%), Positives = 242/584 (41%), Gaps = 53/584 (9%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 + A YA +V+ G A + A RH+ D+ + F Y +D D A + +F ++ P Sbjct: 10 NAANQYARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLLP 69 Query: 89 NVDTGEPTKLM-----EWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILV 142 + K M WQ F FGW K +RF V + R GK+ A + Sbjct: 70 HTKGEWAFKRMLITLEPWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAGVA 129 Query: 143 CYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKI-IQIEPFKSYANEVNLYIQS 201 Y F ++ + Y A+ KQ ++F M ++ + +E F N NL Sbjct: 130 LYCFTCDN-EFGAEVYSGATTE-KQAWEVFRPARLMCKRTPLLVEAFGIEVNASNLNRPE 187 Query: 202 DQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFI 261 D R L D AI DE E + + +++G Sbjct: 188 DGA---------RFEPLIGNPGDGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMW 238 Query: 262 QISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPL 321 I+T+ + P ++ ++ +I+ + + G+I++ D D+ P+ K+NP Sbjct: 239 AITTAGYNIEGPCYDKRREVIEMLNGSVPN--NELFGVIYTVDEGDDWTDPKVLEKANPN 296 Query: 322 LDLPDQRDNLL----KGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNL---KDVE 374 + + RD LL + + + R + + F+TK+LN+W+ T ++ NL ++ E Sbjct: 297 IGVSVYRDFLLSQQQRAINNARHAGV-------FKTKHLNVWVAART-AFFNLVSWQNCE 348 Query: 375 DAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH---IEQHSFIPFQQAGSI 430 D +G + FD + D +++ ++ + DGK H + ++P+ S+ Sbjct: 349 DKTLTLELFEGQPCVLAFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSV 408 Query: 431 EAKE-KQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQL--KVKFFGYDRFG 487 E E ++ ++ + E +T ++ Y+++L + V D FG Sbjct: 409 EKNEDRRTAERFQKWVEMGFLTVTDGAEVD----YRYILEEAKAANKLNPVSESPIDPFG 464 Query: 488 SYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNA 547 + + + N+N + I Q + +++P K L+ + + +P+M + N Sbjct: 465 ATGLSHDLADENLNP----VTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNV 520 Query: 548 V---IKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENS 588 V I + + K++A +ID A+I A+ +AM Y E++ Sbjct: 521 VGKTIPGNDDVVKPIKEQAENKIDGAVALIMAVGRAMLYEKEDT 564 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 94.4 bits (233), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 125/539 (23%), Positives = 223/539 (41%), Gaps = 48/539 (8%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 D A YA V+ G +A + LA R L DL RQ D+PY +D +A+R ++F ++ P Sbjct: 5 DIARQYASDVVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMP 64 Query: 89 NVD---TGEPTKLM--EWQEFTFALMFGWRDKDNNK-RFTRVIDSVARGQGKTYQMAILV 142 + + +KL+ WQ F A +FGW +D K RF + + R GK+ ++A Sbjct: 65 HTKGKWSASKSKLVFEPWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARG 124 Query: 143 CYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKI------IQIEPFKSYANEVN 196 Y F + G S + + KQ ++F M K+ IE + N Sbjct: 125 IYLFAAD--GESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRFGIELSGNQKNPGP 182 Query: 197 LYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVS 256 +++ D M K V+ G S H A+ DE E + V + +G Sbjct: 183 MFVMED---MSKFETVIG----NPGDGASPH--AALVDEYHEHDTDALVDTMQTGMGARE 233 Query: 257 NHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWV 316 I+T+ + P HE ++ +I+ +E + ++ G+I++ D D P + + Sbjct: 234 QPLLSIITTAGSNLGGPCHEKRRDVIRILEG--QTIDETIFGIIYTIDEDDPWDDPASLI 291 Query: 317 KSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDA 376 K+NP + D LL L + S + F+TK+LN W+ T ++N+ + Sbjct: 292 KANPNYGVSVFPDFLLAQLQQAKRS---ASKQNAFRTKHLNQWVGART-VWMNMLAWQRQ 347 Query: 377 VYNDFNI---DGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAK 433 DF I G ++ D + D AL ++ G+F+ + Sbjct: 348 -KRDFTIADMAGCRCWMALDLASKKDVAALVMLFE-KAGQFYCIPRFY--------APEA 397 Query: 434 EKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKN 493 ++ Y+N+ + P + + I +L+ +Q L+ F D +Y + Sbjct: 398 AAEENEKYQNFALEGHLVLTPGSMTDYAFIEADILDLAKQIDLQDAAFD-DWQANYLITR 456 Query: 494 ITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKAD 552 ++ NT ++D Q +++P K ++ + + +PVM + N K D Sbjct: 457 LS-----NTSIPVVDFNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKID 510 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 85.1 bits (209), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 95/392 (24%), Positives = 159/392 (40%), Gaps = 26/392 (6%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 +A V+ G + A ++LA RHL DL + DF + +D + A R L ++ P+ Sbjct: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTKGE 73 Query: 92 ---TGEPTKLMEWQEFTFALMFGWRDKDNNK-RFTRVIDSVARGQGKTYQMAILVCYSFL 147 G+ L WQ+F FGW +K K RF V R GK+ A + F+ Sbjct: 74 WAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGMFV 133 Query: 148 IESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMK 207 ++ + Y A+ KQ ++F M+++ + S EVN M Sbjct: 134 LDDE-FGAEVYAGATTE-KQAWEVFRPAQLMVKRSPML--IDSAGIEVNAS------NMN 183 Query: 208 KNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSY 267 K + R + D AI DE E S +++G I+T+ Sbjct: 184 KPADGSRFEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAG 243 Query: 268 PDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 + P + ++ +I+ +E D G IW+ D D+ P K+NP + + Sbjct: 244 ANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISVY 301 Query: 328 RDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKD---VEDAVYNDFNID 384 +D L S T + F+TK+LN+W Y NL+D ED + Sbjct: 302 QDYLESQQQRAIKSARFT---NTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFE 357 Query: 385 GHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH 415 G + + D + D +++ ++ +D DG+ H Sbjct: 358 GQDCVLALDMARKLDLNSMARLFWHDIDGRRH 389 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 80.5 bits (197), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 94/393 (23%), Positives = 160/393 (40%), Gaps = 28/393 (7%) Query: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVDTG 93 +A V+ G + A ++LA RHL DL + DF + +D + A R L ++ P+ G Sbjct: 14 FARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHT-KG 72 Query: 94 E------PTKLMEWQEFTFALMFGWRDKDNNK-RFTRVIDSVARGQGKTYQMAILVCYSF 146 E L WQ+F FGW +K K RF V R GK+ A + F Sbjct: 73 EWAFRKQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGIGMF 132 Query: 147 LIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIM 206 +++ + Y A+ KQ ++F M+++ ++ V I+ + M Sbjct: 133 VLDDE-FGAEVYAGATTE-KQAWEVFRPARLMVKRSPEL--------IVAADIEVNASNM 182 Query: 207 KKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS 266 K + R L D +I DE E S +++G I+T+ Sbjct: 183 NKPEDGSRFEPLIGNPGDGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTA 242 Query: 267 YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPD 326 + P + ++ +I+ +E D G IW+ D D+ P K+NP + + Sbjct: 243 GANIEGPCFDKRRQVIEMLEG--TVPDDELFGWIWTIDEGDDWTDPRVLAKANPNIGISV 300 Query: 327 QRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKD---VEDAVYNDFNI 383 +D L S T + F+TK+LN+W Y NL+D ED Sbjct: 301 YQDYLESQQQRAIKSARFT---NTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQF 356 Query: 384 DGHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH 415 +G + + D + D +++ ++ +D DG+ H Sbjct: 357 EGQDCVLALDMARKLDLNSMARLFWHDIDGRRH 389 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 74.7 bits (182), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 157/396 (39%), Gaps = 28/396 (7%) Query: 31 ATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNV 90 A +A V+ G A + LA RHL DL F Y +D +A + LR ++ P+ Sbjct: 12 ANQFARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHT 71 Query: 91 DTGEPTK-----LMEWQEFTFALMFGW-RDKDNNKRFTRVIDSVARGQGKTYQMAILVCY 144 K L WQ F A FGW R K +RF V R GK+ +A V Sbjct: 72 KGEWAYKRQLVTLEPWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSV-IAAGVGI 130 Query: 145 SFLIESVGLSNQDYLVASINFKQTMKLFGYVASMM-RKIIQIEPFKSYANEVNLYIQSDQ 203 + + Y A+ +Q ++F M+ R + IE +L I+ + Sbjct: 131 AMFTADDEFGAEVYCGATTE-RQAWEVFRPARLMVKRSPLLIE---------HLGIEVNA 180 Query: 204 IIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQI 263 + + + R + D AI DE E + +++G I Sbjct: 181 QALNRPEDGSRFEPIIGNPGDGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVI 240 Query: 264 STSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLD 323 +T+ + P ++ ++ +I+ +E D G IW+ D D+ P K+NP + Sbjct: 241 TTAGANIEGPCYDKRRQVIEMLEG--TVPDDELFGWIWTIDEDDDWTDPRVLAKANPNIG 298 Query: 324 LPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKD---VEDAVYND 380 + ++ L S T + F+TK+LN+W Y NL+D ED + Sbjct: 299 ISVYQEYLESQQQRAIKSARFT---NTFKTKHLNVWTSAKA-GYFNLEDWKACEDRSLSL 354 Query: 381 FNIDGHEVFIGFDYSMFSDNTALSFVYPYD-DGKFH 415 +G + + D + D +++ ++ D DG+ H Sbjct: 355 EQFEGQDCVLALDMARKLDLNSMARLFWRDIDGRRH 390 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 117/535 (21%), Positives = 221/535 (41%), Gaps = 43/535 (8%) Query: 72 YDVDEANRLLRFAK-ICPNVDTGEPTKLME---WQEFTFALMFGWRDKDNNKRFTRVIDS 127 +DVD AN +L F + +V +LME W+ F FA M+GW K+ + RVI Sbjct: 46 FDVDRANEMLDFVQSFIRHVKGPLAGQLMELELWEMFVFANMYGWYHKNEKGKTVRVIRE 105 Query: 128 ----VARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKII 183 V + GKT A + Y+ E + L Y AS +++Q +A + I Sbjct: 106 SYVQVPKKNGKTIIAAGALLYAMYGE-LELGADCYCAAS-DYEQAQNAAEPIA---QAIE 160 Query: 184 QIEPFKSYA---NEVNLYIQSDQIIMKKNN----NVLRAISLEAGQYDSYHFRTAIFDEI 236 EP + VN + N N + ++ + + + DE+ Sbjct: 161 NSEPLARHTQIYKGVNGTVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDEL 220 Query: 237 GEVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSY 296 ++ + + S Q+ + IST+ + K +E D D DS Sbjct: 221 HAQENMDMYDNLKSAQISREQPMMLNISTAGKGASSVGMRVYKYAKLVLEND---DDDSL 277 Query: 297 LGLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNL 356 IW + + + W NP + + + L + S + ++F +K+L Sbjct: 278 FVAIWEPNKNYDWEDRKVWKMVNPNIGVSVTMEQLEIEFKKAKQS---AHSKAEFLSKHL 334 Query: 357 NLWLKQSTDSYLNLKDVEDAVYNDF-NIDGHEVFIGFDYSMFSDNTALSFVYPY--DDGK 413 N+++ D+Y V+ + D ++ G ++G D S +D T +S +P D+G+ Sbjct: 335 NVFV-NGADNYFEHDQVQHVLVKDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGR 393 Query: 414 --FHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYV 471 ++Q F+P + +I+ KEK+D + Y + E T +I+ +QI ++++ + Sbjct: 394 SIIKVKQMYFLPNE---NIDFKEKEDNVPYTDMVERGFATFCDGKMIDQDQIMEYIVECM 450 Query: 472 EQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHK 531 + + V+ YD S ++ E+L + + + Q + + N E+ + K Sbjct: 451 DLYD--VQQINYDPAMSQKLIEKLENLGLEC----IAVNQYPNVM-NAMLDDSEILIYEK 503 Query: 532 VTIPNDPVMQKALLNAVIKADKIGIHV-DKDKATLQIDVVDAIIDALYQAMYYFD 585 I ++P+ LN V+ + G+ K ++ +ID A + A + M D Sbjct: 504 RLITDNPLFVYCALNVVVVTNINGMKAPSKRQSKKKIDGFVAFLCAHKETMMVMD 558 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 101/440 (22%), Positives = 190/440 (43%), Gaps = 48/440 (10%) Query: 128 VARGQGKTYQMAILVCYSFLIESVGLSNQD-YLVASINFKQTMKLFGYVASMMRKIIQI- 185 + R GKT ++ + Y+ + G + + +L+A++ KQ LF +M++ ++ Sbjct: 1 MGRKNGKTTTISGVANYA--VSQDGENGAEIHLLANV-MKQARILFDESKAMIKASPKLR 57 Query: 186 EPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETV 245 E F+ +E I D I K + + ++ + D + IFDEI E K + + Sbjct: 58 ENFRPLRDE----IHYDATISK-----IMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLI 108 Query: 246 SKIISGQVKVSNHQFIQISTS---YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWS 302 S I + + I I+T+ P V E + + + +D + + S Sbjct: 109 SVIKNSRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIED-----ERTFYYLAS 163 Query: 303 QDSLDETYKPETWVKSNPLL----DLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNL 358 D D+ W+K+NP L DL + ++ K KR D DF TK N+ Sbjct: 164 LDDDDDINDSSNWIKANPNLGVSIDLAEMKEEWEKA---KRTPD----ERGDFITKRFNI 216 Query: 359 WLKQSTDSYLN---LKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFH 415 + S+++ L+ D + D ++G IG+D S D TA + D+GK Sbjct: 217 FANNDEMSFIDYPTLQKNNDIISLD-ELEGRPCTIGYDLSETEDFTAACATFALDNGKVA 275 Query: 416 IEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQ 475 + HS+IP + + + I Y + E +T I+ + + W++ E + Sbjct: 276 VLTHSWIPKHK-----VEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYV 330 Query: 476 LKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIP 535 V+ YDR ++++ ++ T+ + +Q L+ K L+E+F+ K+ Sbjct: 331 --VEKITYDRANAFKLNQELKNYGFETE----ETRQGALTLSPALKDLKEMFLDGKIIFN 384 Query: 536 NDPVMQKALLNAVIKADKIG 555 N+P+M+ + N +K D+ G Sbjct: 385 NNPLMKWYINNVQLKLDRNG 404 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 127/326 (38%), Gaps = 44/326 (13%) Query: 92 TGEPTKLMEWQ--------EFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVC 143 G+P +L+ WQ E T WR K V+ VAR GK+ A ++ Sbjct: 46 AGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRT-----VVVCVARKNGKSTIAAAIML 100 Query: 144 YSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQ 203 Y LI G + + + A+ + Q +F M+ ++ + +Q D Sbjct: 101 Y-HLIADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKLAAVCN--------VQRD- 150 Query: 204 IIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQI 263 +++ +N R +S +AG+ + DE KS + + G + F+ I Sbjct: 151 -VIRYKDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKSSDLFDALTLGSAARNQPMFLII 209 Query: 264 STSYPDPTVPFHE--DQKMIIQAMEQD----WKRDADSYLGLIWSQDSLDETYKPETWVK 317 ST+ PDP PF +Q + + E D + R LG + D LD PE W + Sbjct: 210 STAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGE--TVDHLD----PEVWAR 263 Query: 318 SNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAV 377 NP D+ + D+ ++ +S F + + WL L D Sbjct: 264 CNPSYDILNP-DDFKAAAQRSTEASFRIYRLSQF-VRGASTWLPHGLWDSLAADD----- 316 Query: 378 YNDFNIDGHEVFIGFDYSMFSDNTAL 403 +D G EV GFD S D+TAL Sbjct: 317 -DDPLEPGDEVVCGFDGSWKGDSTAL 341 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 65.5 bits (158), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 125/580 (21%), Positives = 231/580 (39%), Gaps = 73/580 (12%) Query: 50 KLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEP--TKLMEWQEFTFA 107 K+ + + +++ RQ D+ Y ++ + F KI V E ++ ++Q+F Sbjct: 13 KIKTGKIIVNKERQNLVDYLEKYILNRDDLYFDFQKIEDYVGFSEKWFFEIQDFQKFITC 72 Query: 108 LMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQ 167 +F + F+ S+ARG GK ++ L + FL G+ + V + + KQ Sbjct: 73 FVFLYEADTLTPYFSEFFISMARGGGKNGYISTLGAF-FLTPLHGIPKYNMSVVANSEKQ 131 Query: 168 TMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNN------VLRAISLEAG 221 F + M+ +LY++ D K NN ++ IS++A Sbjct: 132 AQVSFQEIYDMIE-------------SNDLYVRKD----KPNNPFNISKVLIEGISMKAQ 174 Query: 222 -QYDSYHFRT--------AIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTV 272 +D+ + +T FDEI + ++ SG KV++ + I T Sbjct: 175 FVFDTSNEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDG----- 229 Query: 273 PFHEDQKMIIQAMEQD-----WKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLP-- 325 H + + + E+ + D I D +E + + W K+NP+ + P Sbjct: 230 --HVREGFLDKLKERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMFEAPMN 287 Query: 326 DQRDNLLKGLTDKRDS-DLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNID 384 D L + + + S ++F TK +NL S D+ + ++D Sbjct: 288 DYGRQLFQEVKQQYLSLKFNPSGRTEFMTKRMNLPETDSQSVVAPWDDILATNRDMPSLD 347 Query: 385 GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNY 444 HE G DY+ D A+ ++ DD ++ + HSF A E Q + Sbjct: 348 NHECIGGLDYASLKDFAAVGLLFKVDD-EYIWKTHSF-----ARKAFLDEYQLKPPIHEW 401 Query: 445 PEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDW 504 E +T + I+P+ I W L + + LK D F ++ + E ++ D+ Sbjct: 402 AEKGLLTIVDEPTISPKHIIDWFLEAQKHYGLKKVI--ADNFRMDLLRPLFEENDI--DY 457 Query: 505 YIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG--IHVDKDK 562 ++ + +L P ++++F + ++P+M+ N +K DK G + K+ Sbjct: 458 EVVKNTRAIQSLLAPR--VEDMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKKEP 515 Query: 563 ATLQIDVVDAIIDALYQAMYYFDENSDLNNK--DTEIDRM 600 + D A+I ALY+A DLN D EID + Sbjct: 516 VRRKTDGFQALIHALYRA-------DDLNGASLDAEIDLL 548 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 116/528 (21%), Positives = 202/528 (38%), Gaps = 100/528 (18%) Query: 92 TGEPTKLMEWQEF----TFALM---FG-WRDKDNNKRFTRVIDSVARGQGKTYQMAILVC 143 G+P +L+ WQ + L FG WR K V+ VAR GK+ A ++ Sbjct: 43 AGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRT-----VVVCVARKNGKSTIAAAIML 97 Query: 144 YSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQ 203 Y LI G + + + A+ + Q +F ++++ P + +V Q D Sbjct: 98 Y-HLIADRGDAQRQIIAAANDRNQARMVF----DSAKQMVNASPKLAAVCDV----QRD- 147 Query: 204 IIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQI 263 +++ +N R +S +AG+ + DE K + + G + F+ I Sbjct: 148 -VIRYKDNTYRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLII 206 Query: 264 STSYPDPTVPFHE--DQKMIIQAMEQD----WKRDADSYLGLIWSQDSLDETYKPETWVK 317 ST+ PDP PF +Q + + E D + R LG + D LD P+ W Sbjct: 207 STAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGE--TVDHLD----PDVWRA 260 Query: 318 SNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAV 377 NP D+ + D+ ++ +S F + + WL L D Sbjct: 261 CNPSYDILNP-DDFKAAAQRSTEASFRIYRLSQF-VRGASTWLPHGLWDSLAADD----- 313 Query: 378 YNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHI--------EQHSFIPFQQAGS 429 D G EV +GFD S D+TAL D F + + H +P Sbjct: 314 --DPLEPGDEVVLGFDGSWKGDSTALVACRIRDLKVFVLGHWEAPADDAHWRVPMADVRE 371 Query: 430 IEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKW--LLNYVEQHQLKVKFFGYDRFG 487 E D RN + A P Y+W L+ +E V+ F Sbjct: 372 -ELHTALDVYRVRN------LVADP---------YRWEETLDNLEADGFPVEAFP----- 410 Query: 488 SYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNA 547 T SL + + T+ + + +++ +P + + + NA Sbjct: 411 -------TNSL---------------ARMVPATQAVYDACRDGRLSHDGNPALGRHIGNA 448 Query: 548 VIKADKIGIHVDKDKAT--LQIDVVDAIIDALYQAMYYFDENSDLNNK 593 V+K D G + K+ A+ +ID+ A++ A++ A+ + ++N +++K Sbjct: 449 VLKEDARGARITKEHASSRRKIDLAVAMVLAVHGAVMWREDNGIVSDK 496 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 107/494 (21%), Positives = 191/494 (38%), Gaps = 46/494 (9%) Query: 101 WQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLV 160 W++F +F + +D+ + ++ RG GK ++ L Y F+ G++N D V Sbjct: 66 WEKFIAPFIFLYFKEDDELFYEEFFITLGRGGGKNGFISTLSNY-FISPLHGINNYDVSV 124 Query: 161 ASINFKQTMKLFGYVASMMRKIIQIE-PFKSYANEVNLYIQSDQIIMKKNNNVLRAISLE 219 + + Q F V + + ++E F ++ QII K N+V + + Sbjct: 125 VANSEDQAKVSFKEVFNTIDGNPKLEGSFDAW---------KAQIIGKATNSVFKFQTSN 175 Query: 220 AGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS------YPDPTVP 273 A D I+DE E + R+ + G KV+N + I T+ + D Sbjct: 176 AKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIGTNGFVRAGFYD---K 232 Query: 274 FHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLP--DQRDNL 331 E K I+ + D I D E W K+NP + P + L Sbjct: 233 LEERSKAILSGENLN-----DRMFPFICKLDDPAEVKNEAMWEKANPAFEKPLSPRSKRL 287 Query: 332 LKGLTDKRDSDLLTGNISD---FQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEV 388 L + ++ + LT N S F TK +NL +D+ + Sbjct: 288 LNKV--RKQYEALTNNPSGREAFMTKRMNLPEVDLEKVVAPWEDILATNREMPELQNRAC 345 Query: 389 FIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYC 448 FDY+ D A+ ++ D + + HS F + G ++ + I Sbjct: 346 IGAFDYASVKDFAAVGLLFRVGD-DYIWKTHS---FARKGYLDIANLKPPIKEWEKQGLL 401 Query: 449 TITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMD 508 TI P I+P + W + E H ++ K G D F ++ + E+ + I+ Sbjct: 402 TIVDEP--TIDPRHVVNWFVEMRETHGIQ-KVIG-DNFRMDLMRPLFEAEGFELE--IIR 455 Query: 509 IQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV--IKADKIGIHVDKDKATLQ 566 + +L P ++ LF H++ ++P+M+ N IK D ++ KD+ + Sbjct: 456 NPRAAHSLLAPR--IETLFANHRIVFGDNPLMRWYTNNVAVKIKPDGNKEYLKKDEHRRK 513 Query: 567 IDVVDAIIDALYQA 580 D A + AL++A Sbjct: 514 TDGFQAFVHALWRA 527 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 103/502 (20%), Positives = 196/502 (39%), Gaps = 58/502 (11%) Query: 82 RFAKICPNVDTGEPTKLMEWQ-EFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAI 140 RF + G+P +L +Q EF A+ DN I S+AR GKT +A Sbjct: 13 RFCIVPEGKLIGQPMRLDTFQKEFILAVY------DNPAGTDMAILSIARKNGKTGLIAG 66 Query: 141 LVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASM------MRKIIQIEPFKSYANE 194 ++ + L+ + N + +++ +Q +F M +++I+ I P Sbjct: 67 IL-LAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIVHITP------- 118 Query: 195 VNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRET--VSKIISGQ 252 ++I N +A+S E AI DE G+V+ + + I + Q Sbjct: 119 -----SGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQ 173 Query: 253 VKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKP 312 N I IST + D ++ ++ K + ++ + K Sbjct: 174 GAHENPLLIVISTQAAN-------DADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKR 226 Query: 313 ETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQT--KNLNLWLKQSTDSYLNL 370 E+W+ +NP L + D G + F+ +NLNL + ST S Sbjct: 227 ESWLAANPAL-------GTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFIS 279 Query: 371 KDVEDAVYNDFNIDG-HEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGS 429 + V + + + I+ + + G D S +D TAL DDG + + + P + + Sbjct: 280 RSVWE-LCGEMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQK---T 335 Query: 430 IEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQ--HQLKVKFFGYDRFG 487 +E + K D Y + + P ++ Y +++ + + + +DR+ Sbjct: 336 LEERTKTDRAPYDVWVREGLLRTTPGASVD----YSFVVADIAEIIGDFDLTSIAFDRWR 391 Query: 488 SYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNA 547 Q + +++ ++ +++ Q + L+ L + +V PV+ +NA Sbjct: 392 IDQFRKDADAIGLSLP--LVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNA 449 Query: 548 VIKADKIGIH-VDKDKATLQID 568 V+ D G +DK KAT +ID Sbjct: 450 VVVKDAAGNRKLDKSKATGRID 471 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 54.3 bits (129), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 102/502 (20%), Positives = 196/502 (39%), Gaps = 58/502 (11%) Query: 82 RFAKICPNVDTGEPTKLMEWQ-EFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAI 140 RF + G+P +L +Q +F A+ DN I S+AR GKT +A Sbjct: 13 RFCIVPEGKLIGQPMRLDPFQKDFILAVY------DNPAGTDMAILSIARKNGKTGLIAG 66 Query: 141 LVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASM------MRKIIQIEPFKSYANE 194 ++ + L+ + N + +++ +Q +F M +++I+ I P Sbjct: 67 IL-LAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPKLQEIVHITP------- 118 Query: 195 VNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRET--VSKIISGQ 252 ++I N +A+S E AI DE G+V+ + + I + Q Sbjct: 119 -----SGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQ 173 Query: 253 VKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKP 312 N I IST + D ++ ++ K + ++ + K Sbjct: 174 GAHENPLLIVISTQAAN-------DADLLSIWIDDAVKSKDPHIVCHVYEAPKDADISKR 226 Query: 313 ETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQT--KNLNLWLKQSTDSYLNL 370 E+W+ +NP L + D G + F+ +NLNL + ST S Sbjct: 227 ESWLAANPAL-------GTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFIS 279 Query: 371 KDVEDAVYNDFNIDG-HEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGS 429 + V + + + I+ + + G D S +D TAL DDG + + + P + + Sbjct: 280 RSVWE-LCGEMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQK---T 335 Query: 430 IEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQ--HQLKVKFFGYDRFG 487 +E + K D Y + + P ++ Y +++ + + + +DR+ Sbjct: 336 LEERTKTDRAPYDVWVREGLLRTTPGASVD----YSFVVADIAEIIGDFDLTSMAFDRWR 391 Query: 488 SYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNA 547 Q + +++ ++ +++ Q + L+ L + +V PV+ +NA Sbjct: 392 IDQFRKDADAIGLSLP--LVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVLTMCAVNA 449 Query: 548 VIKADKIGIH-VDKDKATLQID 568 V+ D G +DK KAT +ID Sbjct: 450 VVVKDAAGNRKLDKSKATGRID 471 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 111/491 (22%), Positives = 201/491 (40%), Gaps = 53/491 (10%) Query: 24 KTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF 83 K K +D YA S+++G K+A ++ A+ R DL Y ++ EA +++ Sbjct: 3 KYKNYDAVMEYAKSIVDGRKVACRELIQAAKRFFKDLENP-----KYDFNPREAEFVIQI 57 Query: 84 ----------AKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQ 132 ++ GEP L WQ+F + G+ K +RF + R Sbjct: 58 IEKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKN 117 Query: 133 GKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYA 192 GKT +A L L+E S + S +Q+++ F ++ +R++ + + F+ Sbjct: 118 GKTRLIAALAWALALLER--QSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILN 175 Query: 193 NEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQ 252 N I + + +RA++ + DS + I DE+ K+ + + I Sbjct: 176 NNQENSISGE---FSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAM 232 Query: 253 VKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQD-----SLD 307 +N I I+T+ D T ++ + + +++ +A Y I D +D Sbjct: 233 KAYTNKLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEA--YFVFICKADEDENGEVD 290 Query: 308 ETYKPETWVKSNPLLDLPDQRDNLLK-GLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDS 366 T P K+NP + + D+++ L + D DF K+LN++ + Sbjct: 291 YT-NPIEHEKANPNYGVTIRPDDIMNDALQAQNDPQ----QRKDFLAKSLNIYT-SPMKA 344 Query: 367 YLNLKDVE--DAVYNDFNID-----GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQH 419 Y N+ + + D Y D+ I+ G + F G D S D TA + Y+ I H Sbjct: 345 YFNIDEFKKSDRKY-DWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVDIAI-TH 402 Query: 420 SFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLK 477 ++ P A K ++D I + + + T+T P +N + KW + K Sbjct: 403 AWFPIVAATR---KAEEDNIPLFGWRDDGWLTMTNTP--TVNFSDVVKW-FETMRAKGFK 456 Query: 478 VKFFGYDR-FG 487 +K G+DR FG Sbjct: 457 IKQVGFDRKFG 467 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 111/491 (22%), Positives = 201/491 (40%), Gaps = 53/491 (10%) Query: 24 KTKYHDPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRF 83 K K +D YA S+++G K+A ++ A+ R DL Y ++ EA +++ Sbjct: 3 KYKNYDAVMEYAKSIVDGRKVACRELIQAAKRFFKDLENP-----KYDFNPREAEFVIQI 57 Query: 84 ----------AKICPNVDTGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQ 132 ++ GEP L WQ+F + G+ K +RF + R Sbjct: 58 IEKTFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKN 117 Query: 133 GKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYA 192 GKT +A L L+E S + S +Q+++ F ++ +R++ + + F+ Sbjct: 118 GKTRLIAALAWALALLER--QSGSKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILN 175 Query: 193 NEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQ 252 N I + + +RA++ + DS + I DE+ K+ + + I Sbjct: 176 NNQENSISGE---FSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAM 232 Query: 253 VKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQD-----SLD 307 +N I I+T+ D T ++ + + +++ +A Y I D +D Sbjct: 233 KAYTNKLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEA--YFVFICKADEDENGEVD 290 Query: 308 ETYKPETWVKSNPLLDLPDQRDNLLK-GLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDS 366 T P K+NP + + D+++ L + D DF K+LN++ + Sbjct: 291 YT-NPIEHEKANPNYGVTIRPDDIMNDALQAQNDPQ----QRKDFLAKSLNIYT-SPMKA 344 Query: 367 YLNLKDVE--DAVYNDFNID-----GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQH 419 Y N+ + + D Y D+ I+ G + F G D S D TA + Y+ I H Sbjct: 345 YFNIDEFKKSDRKY-DWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVDIAI-TH 402 Query: 420 SFIPFQQAGSIEAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLK 477 ++ P A K ++D I + + + T+T P +N + KW + K Sbjct: 403 AWFPIVAATR---KAEEDNIPLFGWRDDGWLTMTNTP--TVNFSDVVKW-FETMRAKGFK 456 Query: 478 VKFFGYDR-FG 487 +K G+DR FG Sbjct: 457 IKQVGFDRKFG 467 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 45.8 bits (107), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 + A ++ V++G LA + K A+ R L DL + DF +H D L+ + Sbjct: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHH-QFDFVIGLIEGTIVHV 65 Query: 89 NVDTGE-------PTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAI 140 + E P L WQ+F +FG+ +K N +RF + + R QGKT A Sbjct: 66 QGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAAS 125 Query: 141 LVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKI 182 L +++ S + Y+VA+ + KQT + FG++ + KI Sbjct: 126 LTWAKNIVDRASGS-KTYIVAN-SLKQTQESFGFLTYNVEKI 165 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 101/514 (19%), Positives = 200/514 (38%), Gaps = 49/514 (9%) Query: 97 KLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESV-GLSN 155 KL +Q+F + +F + N + +++ + RG GK ++ ++ Y LI G+ N Sbjct: 63 KLENFQKFIISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISGIIAY--LISPFHGIKN 120 Query: 156 QDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRA 215 + + + + Q F + + + +++ Y +I N+V+R Sbjct: 121 YNVSLVANSEDQAKTSFDEIYNTVESNPKLKEI--------YYNTKSEIKSIHTNSVMRF 172 Query: 216 ISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS--YPDPTVP 273 + D +FDEI + +S + V SG KV N + I T + + Sbjct: 173 RTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFID 232 Query: 274 FHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLP--DQRDNL 331 +D+ + + W +S I D E E W K+NP+ P D L Sbjct: 233 SMKDKAKKVLSGAARW----NSMFPFICKIDEEHEVDDKEKWQKANPMFHQPMSDYAQEL 288 Query: 332 LKGLTDKRDSDLL-TGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFI 390 + ++ + + N +F TK ++ + S + +++ ++ G Sbjct: 289 FDMVCEQYEEMIEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIG 348 Query: 391 GFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIP----------FQQAGSIEAKEKQDGIT 440 G DY+ D A+ ++ D + HSF+ ++ SI K + I Sbjct: 349 GLDYAAIRDFAAVGLLFK-DRDDYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPI- 406 Query: 441 YRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITES--- 497 + + + +T + INP+ I W + ++ ++ D F +K + E Sbjct: 407 -KKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFEREGF 465 Query: 498 --LNVNT----DWYIMDIQQRTSA---LANPTKFLQELFVTHKVTIPNDPVMQKALLNAV 548 L+ NT Y ++I + A L P ++ F H+V ++ +M+ N + Sbjct: 466 EVLSKNTFSAPPGYQIEIVRNPRAIDSLLAPR--IETAFANHRVVFGHNDMMRWYTHNVL 523 Query: 549 --IKADKIGIHVDKDKATLQIDVVDAIIDALYQA 580 +K+D +V K+ + D A A+Y+A Sbjct: 524 RRLKSDGNVEYVKKEDTRRKTDGFKAFEYAMYRA 557 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 100/513 (19%), Positives = 199/513 (38%), Gaps = 47/513 (9%) Query: 97 KLMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQ 156 KL +Q+F + +F + N + +++ + RG GK ++ ++ Y L G+ N Sbjct: 63 KLENFQKFIISFVFLRYSETNRNVYKKILIMMGRGGGKNGLISGIIAY-LLSPFHGIKNY 121 Query: 157 DYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAI 216 + + + + Q F + + + +++ Y +I N+V+R Sbjct: 122 NVSLVANSEDQAKTSFDEIYNTVESNPKLKEI--------YYNTKSEIKSIHTNSVMRFR 173 Query: 217 SLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS--YPDPTVPF 274 + D +FDEI + +S + V SG KV N + I T + + Sbjct: 174 TSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDS 233 Query: 275 HEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLP--DQRDNLL 332 +D+ + + W +S I D E E W K+NP+ P D L Sbjct: 234 MKDKAKKVLSGNARW----NSMFPFICKIDEEHEVDDKEKWQKANPMFHEPMSDYAQELF 289 Query: 333 KGLTDKRDSDLL-TGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIG 391 + ++ + + N +F TK ++ + S + +++ ++ G G Sbjct: 290 DMVCEQYEEMVEDPSNREEFMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGG 349 Query: 392 FDYSMFSDNTALSFVYPYDDGKFHIEQHSFIP----------FQQAGSIEAKEKQDGITY 441 DY+ D A+ ++ + + HSF+ ++ SI K + I Sbjct: 350 LDYAAIRDFAAVGLLFK-NGADYVWLSHSFVRKEFVDTYYGYSKRKDSINGKRQFAPI-- 406 Query: 442 RNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITES---- 497 + + + +T + INP+ I W + ++ ++ D F +K + E Sbjct: 407 KKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDNFRMEILKPLFEREGFE 466 Query: 498 -LNVNT----DWYIMDIQQRTSA---LANPTKFLQELFVTHKVTIPNDPVMQKALLNAV- 548 L+ NT Y ++I + A L P ++ F HKV ++ +M+ N + Sbjct: 467 VLSKNTFTAPPGYQIEIVRNPRAIDSLLAPR--IETAFANHKVIFGHNDMMRWYTHNILR 524 Query: 549 -IKADKIGIHVDKDKATLQIDVVDAIIDALYQA 580 +K+D +V K+ + D A A+Y+A Sbjct: 525 RLKSDGNVEYVKKEDTRRKTDGFKAFEYAMYRA 557 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 107/504 (21%), Positives = 208/504 (41%), Gaps = 51/504 (10%) Query: 97 KLMEWQEFTFALMFGWRDKDNNKRFTRVIDSV----ARGQGKTYQMAILVCYSFLIESVG 152 KL Q++ + LM G+ D +I+ + RG GK+ MA V ++ G Sbjct: 65 KLHPTQKYWYELMLGYDMVDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 Query: 153 LSNQDYLVASINFKQTMKLFGYV------ASMMRKIIQIEPFKSYANEVNLYIQSDQIIM 206 + LV + + Q +F V + +R + + FKS + + Sbjct: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLE-FTAFKTTFK 181 Query: 207 KKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS 266 K+ N+ LRA G S + IFDE+ T S + K N Q I I++ Sbjct: 182 KQTNDTLRA----QGGNSSLN----IFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSG 233 Query: 267 YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL-DLP 325 + + +++ + + + D GL++ ++ ++ + W + PL+ D+P Sbjct: 234 GLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVP 289 Query: 326 DQRDNLLKGLTDKRDSDLLTGNIS---DFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFN 382 G+ + + +L G+ + F N+ L + Q T Y +D + +N Sbjct: 290 K-----WSGVIE--EYELAQGDPALQNKFLAFNMGLPM-QDTAYYFTPQDTKLTEFNLSV 341 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYR 442 + + ++G D S+ D TA+SFV +GK + +F Q ++ ++++ + Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCEL-EGKTYSHTLTFSVRSQYEQLDTEQQELWTEFV 400 Query: 443 NYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNT 502 + E + IN + ++ ++ + +++ GYD +K + E + Sbjct: 401 DRGELILLDTE---YINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDK 457 Query: 503 DWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIGIH----- 557 D ++ ++ + K L+ V +K+ I N VMQ AL N +K + G + Sbjct: 458 DGDNQRAIRQGFSMNDYIKLLKSKLVENKL-IHNQKVMQWALNNTAVKIGQSGDYMYTKK 516 Query: 558 VDKDKATLQIDVVDAIIDALYQAM 581 ++KDK ID A+ AL A+ Sbjct: 517 LEKDK----IDPTVALTMALEMAV 536 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 84/393 (21%), Positives = 149/393 (37%), Gaps = 31/393 (7%) Query: 199 IQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNH 258 + +II + +V+R + D IFDEI E V+ G K N Sbjct: 161 VSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNR 220 Query: 259 QFIQISTSYPDPTVPFHEDQKMIIQAMEQ------DWKRDADSYLGLIWSQDSLDETYKP 312 + IST D V ++ I AM+ K D E Sbjct: 221 RTFYIST---DGFV-----REGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDR 272 Query: 313 ETWVKSNPLLDLP--DQRDNLLKGLTDK-RDSDLLTGNISDFQTKNLNLWLKQSTDSYLN 369 +TW K+NP+L P + LL + ++ D N +F TK +NL Sbjct: 273 QTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAP 332 Query: 370 LKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGS 429 K++ N+D G D++ D ++ ++ +D + HSF+ + G Sbjct: 333 WKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV---RQGF 388 Query: 430 IEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSY 489 ++ + + I + + + +T +I E I W L E++ L+ D + + Sbjct: 389 LDDVKLEPPI--KEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVI--ADNYRTD 444 Query: 490 QVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV- 548 V+ E + + ++ + L P + +F H V ++P+M+ N Sbjct: 445 IVRRAFEDAGIKLE--VLRNPKAIHGLLAPR--IDTMFAKHNVIYGDNPLMRWFTNNVAV 500 Query: 549 -IKADKIGIHVDKDKATLQIDVVDAIIDALYQA 580 IK D ++ KD+ + D A + ALY+A Sbjct: 501 KIKPDGNKEYIKKDEVRRKTDGFMAFVHALYRA 533 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 149/393 (37%), Gaps = 31/393 (7%) Query: 199 IQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNH 258 + +II + +V+R + D IFDEI E V+ G K N Sbjct: 161 VSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNR 220 Query: 259 QFIQISTSYPDPTVPFHEDQKMIIQAMEQ------DWKRDADSYLGLIWSQDSLDETYKP 312 + IST D V ++ I AM+ K D E Sbjct: 221 RTFYIST---DGFV-----REGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDR 272 Query: 313 ETWVKSNPLLDLP--DQRDNLLKGLTDK-RDSDLLTGNISDFQTKNLNLWLKQSTDSYLN 369 +TW K+NP+L P + LL + ++ D N +F TK +NL Sbjct: 273 QTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAP 332 Query: 370 LKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGS 429 K++ N+D G D++ D ++ ++ +D + HSF+ + G Sbjct: 333 WKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV---RQGF 388 Query: 430 IEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSY 489 ++ + + I + + + +T +I E I W L E++ L+ D + + Sbjct: 389 LDDVKLEPPI--KEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVI--ADNYRTD 444 Query: 490 QVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVI 549 V+ E + + ++ + L P + +F H V ++P+M+ N + Sbjct: 445 IVRRAFEDAGIKLE--VLRNPKAIHGLLAPR--IDTMFAKHNVIYGDNPLMRWFTNNVAV 500 Query: 550 KADKIG--IHVDKDKATLQIDVVDAIIDALYQA 580 K G ++ KD+ + D A + ALY+A Sbjct: 501 KVKPDGNKEYIKKDENRRKTDGFMAFVHALYRA 533 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 149/393 (37%), Gaps = 31/393 (7%) Query: 199 IQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNH 258 + +II + +V+R + D IFDEI E V+ G K N Sbjct: 161 VSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNR 220 Query: 259 QFIQISTSYPDPTVPFHEDQKMIIQAMEQ------DWKRDADSYLGLIWSQDSLDETYKP 312 + IST D V ++ I AM+ K D E Sbjct: 221 RTFYIST---DGFV-----REGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDR 272 Query: 313 ETWVKSNPLLDLP--DQRDNLLKGLTDK-RDSDLLTGNISDFQTKNLNLWLKQSTDSYLN 369 +TW K+NP+L P + LL + ++ D N +F TK +NL Sbjct: 273 QTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAP 332 Query: 370 LKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGS 429 K++ N+D G D++ D ++ ++ +D + HSF+ + G Sbjct: 333 WKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWL-GHSFV---RQGF 388 Query: 430 IEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSY 489 ++ + + I + + + +T +I E I W L E++ L+ D + + Sbjct: 389 LDDVKLEPPI--KEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVI--ADNYRTD 444 Query: 490 QVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVI 549 V+ E + + ++ + L P + +F H V ++P+M+ N + Sbjct: 445 IVRRAFEDAGIKLE--VLRNPKAIHGLLAPR--IDTMFAKHNVIYGDNPLMRWFTNNVAV 500 Query: 550 KADKIG--IHVDKDKATLQIDVVDAIIDALYQA 580 K G ++ KD+ + D A + ALY+A Sbjct: 501 KVKPDGNKEYIKKDENRRKTDGFMAFVHALYRA 533 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 106/504 (21%), Positives = 208/504 (41%), Gaps = 51/504 (10%) Query: 97 KLMEWQEFTFALMFGWRDKDNNKRFTRVIDSV----ARGQGKTYQMAILVCYSFLIESVG 152 KL Q++ + LM G+ D +++ + RG GK+ MA V ++ G Sbjct: 65 KLHPVQKWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 Query: 153 LSNQDYLVASINFKQTMKLFGYV------ASMMRKIIQIEPFKSYANEVNLYIQSDQIIM 206 + LV + + Q +F V + +R + + FKS + + Sbjct: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLE-FTSFKTTFK 181 Query: 207 KKNNNVLRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTS 266 K+ N+ LRA G S + IFDE+ T S + K N Q I I++ Sbjct: 182 KQTNDTLRA----QGGNSSLN----IFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSG 233 Query: 267 YPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLL-DLP 325 + + +++ + + + D GL++ ++ ++ + W + PL+ D+P Sbjct: 234 GLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVP 289 Query: 326 DQRDNLLKGLTDKRDSDLLTGNIS---DFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFN 382 G+ + + +L G+ + F N+ L + Q T Y +D + +N Sbjct: 290 K-----WSGVIE--EYELAQGDPALQNKFLAFNMGLPM-QDTAYYFTPQDTKLTDFNLSV 341 Query: 383 IDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYR 442 + + ++G D S+ D TA+SFV +GK + +F Q ++ ++++ + Sbjct: 342 FNKNRTYVGIDLSLIGDLTAVSFVCEL-EGKTYSHTLTFSVRSQYEQLDTEQQELWTEFV 400 Query: 443 NYPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNT 502 + E + IN + ++ ++ + +++ GYD +K + E + Sbjct: 401 DRGELILLDTE---YINVNDLIPYINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDK 457 Query: 503 DWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIGIH----- 557 D ++ ++ + K L+ V +K+ I N VMQ AL N +K + G + Sbjct: 458 DGDNQRAIRQGFSMNDYIKLLKSKLVENKL-IHNQKVMQWALNNTAVKIGQSGDYMYTKK 516 Query: 558 VDKDKATLQIDVVDAIIDALYQAM 581 ++KDK ID A+ AL A+ Sbjct: 517 LEKDK----IDPTVALTMALEMAV 536 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 95/472 (20%), Positives = 189/472 (40%), Gaps = 46/472 (9%) Query: 97 KLMEWQEFTFALMFGW----RDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVG 152 KL +Q+F +A +F D D F RG GK ++ ++ + ++ G Sbjct: 68 KLFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCMI-FECTTKNHG 126 Query: 153 LSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNV 212 + + + + + + Q F + +M+ + + K+ + IQ +KN + Sbjct: 127 VDHYNIDIVATSEDQAKTSFEDIYNMLEE--NKDTMKNVYRWNLVAIQH-----RKNGST 179 Query: 213 LRAISLEAGQYDSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST-SYPDPT 271 ++ + A D FDE + + SG K + ++T Y + Sbjct: 180 IKYKTSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGYVRGS 239 Query: 272 VPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPL-LDLPDQRDN 330 V +D+K++ Q + K ++ + I DS DE W K+NP+ L R Sbjct: 240 VL--DDRKVLAQQVLNGEKPNSKMF-PFICKLDSPDEVQNKTKWAKANPMILYYKPLRIE 296 Query: 331 LLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFI 390 + + D + S + + +F TK +N + T + D++ ++ Sbjct: 297 IDQHWDDAQSSSEI---MVEFMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIG 353 Query: 391 GFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTI 450 G D++ D A+ ++ +GK+ + H+FI A S++ IT +P + + Sbjct: 354 GIDFADVRDFCAVGLLFK-KEGKYIFKHHTFIC---AESLK-------ITKFKFPIHEAV 402 Query: 451 TAHPQGIINPEQI-----YKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWY 505 II+ I +W L ++H ++ D S++ K++ E+ T Sbjct: 403 EKGLATIIHDNYIDEDYPLQWFLEQAKEH--RIINIATD---SFRYKSLKEAF---TSAG 454 Query: 506 IMDIQQRTSALANP--TKFLQELFVTHKVTIPNDPVMQKALLNAVIKADKIG 555 IQ R+ ++ + + +LF +HK+ +D +M+ N IK D G Sbjct: 455 APLIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARG 506 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 111/533 (20%), Positives = 218/533 (40%), Gaps = 53/533 (9%) Query: 70 YHYDVDEANRLLRFAKICPNVDTGEPTK--LMEWQEFTFALMFGWRDKDNNKRFTRVIDS 127 Y Y D + + + + + TG K L+ Q + + LM G+ D +++ Sbjct: 36 YIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNE 95 Query: 128 V----ARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYV------AS 177 + RG GK+ MA V ++ G + LV + + Q +F V + Sbjct: 96 IFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 178 MMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIG 237 +R + + FKS + + K+ N+ LRA G S + IFDE+ Sbjct: 154 TLRVYNENKIFKSTKQGLE-FTSFKTTFKKQTNDTLRA----QGGNSSLN----IFDEVH 204 Query: 238 EVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYL 297 T S + K N Q I I++ + + +++ + + + D Sbjct: 205 TYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDK----LVERFKSEEEFYNDRSF 260 Query: 298 GLIWSQDSLDETYKPETWVKSNPLL-DLPDQRDNLLKGLTDKRDSDLLTGNIS---DFQT 353 GL++ ++ ++ + W + PL+ D+P G+ + + +L G+ + F Sbjct: 261 GLLYMLENHEQVKDKKNWTMALPLIGDVPK-----WSGVIE--EYELAQGDPALQNKFLA 313 Query: 354 KNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGK 413 N+ L + Q T Y +D + +N + + ++G D S+ D TA+SFV +GK Sbjct: 314 FNMGLPM-QDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL-EGK 371 Query: 414 FHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQ 473 + +F Q ++ ++++ + + E + IN + ++ ++ + Sbjct: 372 TYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTE---YINVNDLIPYINDFRSK 428 Query: 474 HQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVT 533 +++ GYD +K + E + D ++ ++ + K L+ V +K+ Sbjct: 429 TGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKL- 487 Query: 534 IPNDPVMQKALLNAVIKADKIGIH-----VDKDKATLQIDVVDAIIDALYQAM 581 I N VMQ AL N +K + G + ++KDK ID A+ AL A+ Sbjct: 488 IHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDK----IDPTVALTMALEMAV 536 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 37.0 bits (84), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 108/532 (20%), Positives = 215/532 (40%), Gaps = 51/532 (9%) Query: 70 YHYDVDEANRLLRFAKICPNVDTGEPTK--LMEWQEFTFALMFGWRDKDNNKRFTRVIDS 127 Y Y D + + + + + TG K L+ Q + + LM G+ D +I+ Sbjct: 36 YIYRYDRVTQAIEWIEDNFYLTTGNLMKIELLPTQRWWYELMLGYDMIDEKGVQVNLINE 95 Query: 128 V----ARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYV------AS 177 + RG GK+ MA V ++ G + LV + + Q +F V + Sbjct: 96 IFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 178 MMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIG 237 +R + + FKS + + K+ N+ LRA G S + IFDE+ Sbjct: 154 TLRVYNENKIFKSTKQGLE-FTSFKTTFKKQTNDTLRA----QGGNSSLN----IFDEVH 204 Query: 238 EVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYL 297 T S + K N Q I I++ + + +++ + + + D Sbjct: 205 TYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDK----LVERFKSEEEFYNDRSF 260 Query: 298 GLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNIS---DFQTK 354 GL++ ++ ++ + W + PL+ + +++ + +L G+ + F Sbjct: 261 GLLYMLENHEQVKDKKNWTMALPLIGSVPKWSGVIE------EYELAQGDPALQNKFLAF 314 Query: 355 NLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKF 414 N+ L + Q T Y +D + +N + + ++G D S+ D TA+SFV +GK Sbjct: 315 NMGLPM-QDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL-EGKT 372 Query: 415 HIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQH 474 + +F Q ++ ++++ + + E + IN + ++ ++ + Sbjct: 373 YSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTE---YINVNDLIPYINDFRTKT 429 Query: 475 QLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTI 534 +++ GYD +K + E + D ++ ++ + K L+ +K+ I Sbjct: 430 GCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLAENKL-I 488 Query: 535 PNDPVMQKALLNAVIKADKIGIH-----VDKDKATLQIDVVDAIIDALYQAM 581 N VMQ AL N +K + G + ++KDK ID A+ AL A+ Sbjct: 489 HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDK----IDPTVALTMALEMAV 536 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 36.6 bits (83), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 109/532 (20%), Positives = 215/532 (40%), Gaps = 51/532 (9%) Query: 70 YHYDVDEANRLLRFAKICPNVDTGEPTK--LMEWQEFTFALMFGWRDKDNNKRFTRVIDS 127 Y Y D + + + + + TG K L+ Q + + LM G+ D +I+ Sbjct: 36 YIYRYDRVTQAIEWIEDNFYLTTGNLMKIELLPTQRWWYELMLGYDMIDEKGVQVNLINE 95 Query: 128 V----ARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYV------AS 177 + RG GK+ MA V ++ G + LV + + Q +F V + Sbjct: 96 IFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 178 MMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIG 237 +R + + FKS + + K+ N+ LRA G S + IFDE+ Sbjct: 154 TLRVYNENKIFKSTKQGLE-FASFKTTFKKQTNDTLRA----QGGNSSLN----IFDEVH 204 Query: 238 EVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYL 297 T S + K N Q I I++ + + +++ + + + D Sbjct: 205 TYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDK----LVERFKSEEEFYNDRSF 260 Query: 298 GLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNIS---DFQTK 354 GL++ ++ ++ + W + PL+ + +++ + +L G+ + F Sbjct: 261 GLLYMLENHEQVKDKKNWTMALPLIGSVPKWSGVIE------EYELAQGDPALQNKFLAF 314 Query: 355 NLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKF 414 N+ L + Q T Y +D + +N + + ++G D S+ D TA+SFV +GK Sbjct: 315 NMGLPM-QDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL-EGKT 372 Query: 415 HIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQH 474 + +F Q ++ ++++ + + E + IN + + ++ + Sbjct: 373 YSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTE---YINVNDLIPHINDFRTKT 429 Query: 475 QLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTI 534 +++ GYD +K + E + D ++ ++ + K L+ V +K+ I Sbjct: 430 GCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKL-I 488 Query: 535 PNDPVMQKALLNAVIKADKIGIH-----VDKDKATLQIDVVDAIIDALYQAM 581 N VMQ AL N +K + G + ++KDK ID A+ AL A+ Sbjct: 489 HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDK----IDPTVALTMALEMAV 536 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 68/319 (21%), Positives = 126/319 (39%), Gaps = 64/319 (20%) Query: 298 GLIWSQDSLDETYKPETWVKSNPLLDLPD---QRDNLLKGLTDKRDSDLLTGNISDFQTK 354 GLI+ D + P W K+NP LD + + + L R S + N+ +K Sbjct: 229 GLIFELDDYSQIEDPNEWYKANPALDEAKGTVSTETITRELNAARHSTIKANNLF---SK 285 Query: 355 NLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVF------IGFDYSMFSD---NTALS- 404 N + T S+ +++E ++D +VF +G D+S+ D N L+ Sbjct: 286 RFNFSVNAVT-SFFTAEEIEIVT----DLDFEKVFYDKWAVLGCDFSLSGDTWGNVLLTK 340 Query: 405 -----FVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIIN 459 ++YP IP + + + G Y H + + Sbjct: 341 VEDTLYIYP-------------IPIRPKNVADKYKHLSGTFY-----------HDEDKND 376 Query: 460 PEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANP 519 + K L + +++ ++ + GYD S + E + + ++Q ++ Sbjct: 377 TQAAVKLLFDKLQELRIGLVGIGYDPAYSANFLYLFEQNKIKAR-LMEKVKQNAFTVSQH 435 Query: 520 TKFLQELFVTHKVTIPNDPVMQKALLNAVIK-ADKIGIHVDKDKATLQIDVVDAIIDALY 578 LQ L T + + N +M++ L NA +K D + + K +ID+VDA ++AL Sbjct: 436 IMSLQRLLKTRGL-LYNSEIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLVDAAVNAL- 493 Query: 579 QAMY---------YFDENS 588 A+Y YF+ N+ Sbjct: 494 -AVYELNRDYVEKYFERNT 511 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 30.8 bits (68), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 9/117 (7%) Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WS + + + + E W SNP + L +++ L + D + L W Sbjct: 226 WSVEDVKDIHDVEAWYNSNPSMGYH---------LNERKIEAELGEDKLDHNVQRLGYWP 276 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIE 417 K + S ++ ++ N + ++F+G Y N A+S GK +E Sbjct: 277 KYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAMSIAVKTLSGKVFVE 333 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 30.8 bits (68), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 9/117 (7%) Query: 301 WSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWL 360 WS + + + + E W SNP + L +++ L + D + L W Sbjct: 226 WSVEDVKDIHDVEAWYNSNPSMGYH---------LNERKIEAELGEDKLDHNVQRLGYWP 276 Query: 361 KQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIE 417 K + S ++ ++ N + ++F+G Y N A+S GK +E Sbjct: 277 KYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAMSIAVKTLSGKVFVE 333 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 30.0 bits (66), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Query: 307 DETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDS 366 ++ + E W +NP L + + K + R++ + F+ LN W + ST Sbjct: 259 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIR 314 Query: 367 YLNLKDVEDAVYNDFNID--------GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQ 418 ++ + ++ F + G + G D + D ++ +++P DG + Sbjct: 315 WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW 374 Query: 419 HSFIP 423 +IP Sbjct: 375 RHWIP 379 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 29.6 bits (65), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 12/125 (9%) Query: 307 DETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDS 366 ++ + E W +NP L + + K + R++ + F+ LN W + ST Sbjct: 590 EDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQFK---LNQW-QNSTIR 645 Query: 367 YLNLKDVEDAVYNDFNID--------GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQ 418 ++ + ++ F + G + G D + D ++ +++P DG + Sbjct: 646 WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLW 705 Query: 419 HSFIP 423 +IP Sbjct: 706 RHWIP 710 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 29.6 bits (65), Expect = 0.10, Method: Compositional matrix adjust. Identities = 78/380 (20%), Positives = 140/380 (36%), Gaps = 68/380 (17%) Query: 40 NGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVDTGEPTKLM 99 NG + K K+A H +D ++ A ++ F + + E K++ Sbjct: 14 NGEMIKLLKKKVAKIEHEIDYKK--------------AEKIFDFIEEFMTLPNNERFKII 59 Query: 100 EWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYL 159 + + LM+ + ID G++ +IL LIE + + Sbjct: 60 PYHKAVLTLMYCTPYQ---------IDEFVVIVGRSNAKSILDVMIALIELFLFPKPNSV 110 Query: 160 VASINFKQ------TMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVL 213 +A + K+ MK F + + II + N+ L +QI++K +N++L Sbjct: 111 IALMATKKDQAEKILMKHFRAMGNCQGTIIN-----KFKNQFKL--NKEQILVK-DNSIL 162 Query: 214 RAISLEAGQY-------DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQIST- 265 ++ E Y D + I DE G K ++ I G K FI + Sbjct: 163 KSKGTEISIYASNEDTLDGGREQLVIIDEFGAFKKNPLIT-IRQGLRKNKGTLFISTTNN 221 Query: 266 -----SYPDPTVPFHEDQKMIIQAMEQDWKRDAD-SYLGLIWSQDSLDETYKPETWVKSN 319 +Y D + E W +D D S+ ++ D DE ++K+N Sbjct: 222 VIRGGAYDDELESWKE------------WVKDDDFSHWVFYYALDDYDEVKDSSKYIKAN 269 Query: 320 PLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVEDAVYN 379 P L +++ K + + I TK NL + ST + + + V+ + Sbjct: 270 PALGYTLSLEDIQKDFIGAIGNPVKMAKII---TKRFNLSMTDST-TIFSKQLVDKCLVP 325 Query: 380 DFNIDGHEVFIGFDYSMFSD 399 + G V IG D+S+ D Sbjct: 326 PLDFSGRLVAIGSDFSVRGD 345 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 28.9 bits (63), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 15/61 (24%) Query: 484 DRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKA 543 D+FG ++V+ +T + V ALA P + E HKV IP DP ++ A Sbjct: 356 DQFGEHRVEAVTFTPRVK------------EALAYPIRGAME---DHKVRIPYDPKIRAA 400 Query: 544 L 544 L Sbjct: 401 L 401 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 98 LMEWQEFTFALMFGWRDKDNNKRFTRVIDSVARGQGKTYQMAILVCYSFLIESVG----L 153 L WQ++ M D RF + + V R GKT A+L Y +++ L Sbjct: 41 LFPWQKWLLIHMLE-LDAFGRLRFRKALVIVGRQNGKTLIAAVLAAYWLYVDAGRWPDQL 99 Query: 154 SNQDYLV 160 QD++V Sbjct: 100 PEQDFIV 106 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 386 HEVFIGFDYSMFSDNTALSFVYP--YDDGKFHI-EQHSF--IPFQ-QAGSIEAKEKQDGI 439 EV++G+D S DN L V P +F + E+H + + FQ QA IE K+ + Sbjct: 420 REVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRV 479 Query: 440 TY 441 TY Sbjct: 480 TY 481 >gi|3411|lcl|protein:vir:101415 Length: 203 # NCBI annotation: Tub # Family: family:all:9457 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006509;genbank:gi:46401663;genbank:GeneID :2777479 Length = 203 Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 605 VLDWFKNSKSGLLGGENTG 623 VLDWFK +KS ++ + TG Sbjct: 108 VLDWFKTAKSRVINPDGTG 126 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 13/76 (17%) Query: 519 PTKFLQEL--FVTHKVTIPNDPV-------MQKALLNAVIKADKIGIH-VDKDKATLQID 568 P+ + +EL F+T V+ N PV + L N K + +H V K K ++D Sbjct: 315 PSDYSKELREFMTKVVSKYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGK---KVD 371 Query: 569 VVDAIIDALYQAMYYF 584 +VD + D L Q +Y+ Sbjct: 372 MVDFVCDLLAQGRFYY 387 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 385 GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIE 417 G + +GFD S+ +D+TAL+ D F ++ Sbjct: 710 GERITLGFDGSLSNDHTALTACRVEDGALFLVK 742 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 385 GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIE 417 G + +GFD S+ +D+TAL+ D F ++ Sbjct: 369 GERITLGFDGSLSNDHTALTACRVEDGALFLVK 401 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%) Query: 387 EVFIGFDYSMFSDNTALSFVYP--YDDGKFHI-EQHSF--IPFQ-QAGSIEAKEKQDGIT 440 EV++G+D S DN L V P KF + E+H++ + FQ QA I ++ +T Sbjct: 426 EVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVFERFNVT 485 Query: 441 Y 441 Y Sbjct: 486 Y 486 >gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: putative structural protein # Family: family:all:3249 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764271;genbank:gi:115315584;genbank:GeneI D:5141538 Length = 301 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 247 KIISGQVKVSNHQFIQISTSYPDPTVPFHEDQK--------MII----QAMEQDWKRDAD 294 KI++G V V + + + SYP VP H +K M+ QA+++D Sbjct: 36 KIVTGLVSVGSMEDQAETNSYPADDVPDHGVKKGATLLQGEMVFIQTDQALKEDMLGQQR 95 Query: 295 SYLGLIWS 302 + GL WS Sbjct: 96 TSNGLGWS 103 >gi|10327|lcl|protein:vir:97406 Length: 212 # NCBI annotation: major tail shaft protein # Family: family:all:11746 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762592;genbank:gi:115304293;genbank:GeneI D:5130609 Length = 212 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 165 FKQTMKLFGYVASMMRKIIQIEPFKSYA 192 FK T FGYV RK+ +P K+YA Sbjct: 79 FKTTSLGFGYVGEPTRKVYTDDP-KAYA 105 >gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: putative major structural protein # Family: family:all:3249 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047126;genbank:gi:9630579;genbank:GeneID: 1261772 Length = 301 Score = 23.5 bits (49), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 247 KIISGQVKVSNHQFIQISTSYPDPTVPFHEDQK--------MII----QAMEQDWKRDAD 294 KI++G V V + + + SYP VP H +K M+ QA+++D Sbjct: 36 KIVTGLVSVGSMEDQAETNSYPADDVPDHGVKKGATLLQGEMVFIQTDQALKEDILGQQR 95 Query: 295 SYLGLIWS 302 + GL WS Sbjct: 96 TANGLGWS 103 >gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: putative capsid # Family: family:all:3249 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762524;genbank:gi:115304223;genbank:GeneI D:5141215 Length = 301 Score = 23.5 bits (49), Expect = 7.8, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 247 KIISGQVKVSNHQFIQISTSYPDPTVPFHEDQK--------MII----QAMEQDWKRDAD 294 KI++G V V + + + SYP VP H +K M+ QA+++D Sbjct: 36 KIVTGLVSVGSMEDQAETNSYPADDVPDHGVKKGATLLQGEMVFIQTDQALKEDILGQQR 95 Query: 295 SYLGLIWS 302 + GL WS Sbjct: 96 TANGLGWS 103 >gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: major tail structural protein # Family: family:all:3249 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764325;genbank:gi:115315639;genbank:GeneI D:5176582 Length = 301 Score = 23.5 bits (49), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 247 KIISGQVKVSNHQFIQISTSYPDPTVPFHEDQK--------MII----QAMEQDWKRDAD 294 KI++G V V + + + SYP VP H +K M+ QA+++D Sbjct: 36 KIVTGLVSVGSMEDQAETNSYPADDVPDHGVKKGSTLLQGEMVFIQTDQALKEDMLGQQR 95 Query: 295 SYLGLIWS 302 + GL WS Sbjct: 96 TSNGLGWS 103 >gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: major structural protein # Family: family:all:3249 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044957;genbank:gi:9629664;genbank:GeneID: 1261264 Length = 301 Score = 23.1 bits (48), Expect = 9.6, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 247 KIISGQVKVSNHQFIQISTSYPDPTVPFHEDQK--------MII----QAMEQDWKRDAD 294 KI++G V V + + + SYP VP H +K M+ QA+++D Sbjct: 36 KIVTGLVSVGSMEDQAETNSYPADDVPDHGVKKGATLLQGEMVFIQTDQALKEDILGQQR 95 Query: 295 SYLGLIWS 302 + GL WS Sbjct: 96 TENGLGWS 103 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.135 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,527 Number of Sequences: 514 Number of extensions: 14756 Number of successful extensions: 311 Number of sequences better than 100.0: 85 Number of HSP's better than 100.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 91 length of query: 624 length of database: 206,069 effective HSP length: 77 effective length of query: 547 effective length of database: 166,491 effective search space: 91070577 effective search space used: 91070577 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)