Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : nt-1 | Genbank acc : NC_021529

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 379

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	26	lcl\|NC_021529.1_cdsid_YP_008125183.1	HHsearch (proba=100.00%)
Portal	23	lcl\|NC_021529.1_cdsid_YP_008125180.1	HHsearch (proba=100.00%)
TermL	20	lcl\|NC_021529.1_cdsid_YP_008125177.1	Blast (e-value=0)
MTP	22	lcl\|NC_021529.1_cdsid_YP_008125179.1	Blast (e-value=2e-92)
Sheath	21	lcl\|NC_021529.1_cdsid_YP_008125178.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	15	lcl\|NC_021529.1_cdsid_YP_008125172.1	HHsearch (proba=100.00%)
Hc2	16	lcl\|NC_021529.1_cdsid_YP_008125173.1	HHsearch (proba=100.00%)
Tc2	17	lcl\|NC_021529.1_cdsid_YP_008125174.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5670 protein:vir:101039 protein:vir:101811	KVP40 44RR2.8t 31	92 % 62 % 62 %
Portal	protein:vir:5665 protein:vir:98265 protein:vir:6896	KVP40 RB43 RB69	95 % 49 % 48 %
TermL	protein:vir:5662 protein:vir:106290 protein:vir:103455	KVP40 Aeh1 RB32	97 % 55 % 53 %
MTP	protein:vir:5664 protein:vir:80985 protein:vir:6895	KVP40 Phi1 RB69	93 % 59 % 59 %
Sheath	protein:vir:5663 protein:vir:101187 protein:vir:101804	KVP40 44RR2.8t 31	94 % 53 % 53 %
Ad2	protein:vir:5657 protein:vir:81013 protein:vir:6589	KVP40 Phi1 RB49	89 % 50 % 50 %
Hc2	protein:vir:5658 protein:vir:103452 protein:vir:7199	KVP40 RB32 T4	88 % 43 % 43 %
Tc2	protein:vir:5659 protein:vir:98260 protein:vir:101155	KVP40 RB43 44RR2.8t	64 % 39 % 37 %