Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 12B3 | Genbank acc : NC_021067

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 263

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	158	lcl\|NC_021067.1_cdsid_YP_007877320.1	HHsearch (proba=100.00%)
Portal	8	lcl\|NC_021067.1_cdsid_YP_007877170.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_021067.1_cdsid_YP_007877163.1	Blast (e-value=2e-36)
MTP	NOT FOUND
Sheath	46	lcl\|NC_021067.1_cdsid_YP_007877208.1	HHsearch (proba=100.00%)
Ad1	23	lcl\|NC_021067.1_cdsid_YP_007877185.1	HHsearch (proba=81.59%)
Hc1	44	lcl\|NC_021067.1_cdsid_YP_007877206.1	HHsearch (proba=100.00%)
Ne1	40	lcl\|NC_021067.1_cdsid_YP_007877202.1	HHsearch (proba=99.94%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	21	2
Ne1<->Hc1	4	2
Ne1<->Ad1	17	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79548	cdtI	18 %
Portal	protein:vir:95254 protein:vir:108215 protein:vir:78161	Felix 01 Giles Min1	20 % 16 % 15 %
TermL	protein:vir:95253 protein:vir:5248 protein:vir:105460	Felix 01 Aaphi23 KC5a	33 % 14 % 15 %
Sheath	protein:vir:95263 protein:vir:5260 protein:vir:80052	Felix 01 Aaphi23 B054	22 % 17 % 17 %
Ad1	protein:vir:79640 protein:vir:104344	TLS RTP	21 % 21 %
Hc1	protein:vir:95261 protein:vir:5258	Felix 01 Aaphi23	26 % 23 %
Ne1	protein:vir:95260 protein:vir:96105 protein:vir:5257	Felix 01 F8 Aaphi23	23 % 19 % 18 %