Virfam_CNT_anal:NC_020860

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiSM | Genbank acc : NC_020860

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 59

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	16	lcl\|NC_020860.1_cdsid_YP_007675692.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_020860.1_cdsid_YP_007675681.1	HHsearch (proba=100.00%)
TermL	3	lcl\|NC_020860.1_cdsid_YP_007675679.1	Blast (e-value=1e-21)
MTP	NOT FOUND
Sheath	20	lcl\|NC_020860.1_cdsid_YP_007675696.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6378 protein:vir:4902 protein:vir:2736	BcepNazgul Sfi11 O1205	17 % 15 % 15 %
Portal	protein:vir:6382 protein:vir:389 protein:vir:3420	BcepNazgul N15 lambda	19 % 18 % 17 %
TermL	protein:vir:79539 protein:vir:387 protein:vir:10320	cdtI N15 VHML	20 % 20 % 20 %
Sheath	protein:vir:1996 protein:vir:4517 protein:vir:489	Mu V P27	20 % 20 % 20 %