Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : VBM1 | Genbank acc : NC_020850

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_020850.1_cdsid_YP_007674343.1	HHsearch (proba=100.00%)
Portal	39	lcl\|NC_020850.1_cdsid_YP_007674348.1	HHsearch (proba=100.00%)
TermL	40	lcl\|NC_020850.1_cdsid_YP_007674349.1	Blast (e-value=3e-98)
MTP	NOT FOUND
Sheath	28	lcl\|NC_020850.1_cdsid_YP_007674337.1	HHsearch (proba=100.00%)
Ad1	32	lcl\|NC_020850.1_cdsid_YP_007674341.1	HHsearch (proba=100.00%)
Hc1	30	lcl\|NC_020850.1_cdsid_YP_007674339.1	HHsearch (proba=96.46%)
Ne1	31	lcl\|NC_020850.1_cdsid_YP_007674340.1	HHsearch (proba=100.00%)
Tc1	29	lcl\|NC_020850.1_cdsid_YP_007674338.1	HHsearch (proba=90.64%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103285 protein:vir:79642 protein:vir:99576	JK06 TLS BcepF1	16 % 14 % 14 %
Portal	protein:vir:5249 protein:vir:103219 protein:vir:79647	Aaphi23 JK06 TLS	18 % 18 % 17 %
TermL	protein:vir:107694 protein:vir:79648 protein:vir:104336	T1 TLS RTP	39 % 39 % 38 %
Sheath	protein:vir:5260 protein:vir:106730 protein:vir:96104	Aaphi23 Bcep1 F8	26 % 18 % 18 %
Ad1	protein:vir:78595 protein:vir:106739 protein:vir:107756	BcepNY3 Bcep1 BcepB1A	25 % 25 % 25 %
Hc1	protein:vir:5258 protein:vir:96107 protein:vir:107716	Aaphi23 F8 BcepB1A	19 % 14 % 18 %
Ne1	protein:vir:99546 protein:vir:5257 protein:vir:80037	BcepF1 Aaphi23 B054	24 % 24 % 23 %
Tc1	protein:vir:3637 protein:vir:101569 protein:vir:106763	Bcep781 Bcep43 Bcep1	14 % 15 % 14 %