Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|NC_020850.1_cdsid_YP_007674343.1 HHsearch (proba=100.00%)
Portal 39 lcl|NC_020850.1_cdsid_YP_007674348.1 HHsearch (proba=100.00%)
TermL 40 lcl|NC_020850.1_cdsid_YP_007674349.1 Blast (e-value=3e-98)
MTP NOT FOUND
Sheath 28 lcl|NC_020850.1_cdsid_YP_007674337.1 HHsearch (proba=100.00%)
Ad1 32 lcl|NC_020850.1_cdsid_YP_007674341.1 HHsearch (proba=100.00%)
Hc1 30 lcl|NC_020850.1_cdsid_YP_007674339.1 HHsearch (proba=96.46%)
Ne1 31 lcl|NC_020850.1_cdsid_YP_007674340.1 HHsearch (proba=100.00%)
Tc1 29 lcl|NC_020850.1_cdsid_YP_007674338.1 HHsearch (proba=90.64%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103285
protein:vir:79642
protein:vir:99576
JK06
TLS
BcepF1
16 %
14 %
14 %
Portal protein:vir:5249
protein:vir:103219
protein:vir:79647
Aaphi23
JK06
TLS
18 %
18 %
17 %
TermL protein:vir:107694
protein:vir:79648
protein:vir:104336
T1
TLS
RTP
39 %
39 %
38 %
Sheath protein:vir:5260
protein:vir:106730
protein:vir:96104
Aaphi23
Bcep1
F8
26 %
18 %
18 %
Ad1 protein:vir:78595
protein:vir:106739
protein:vir:107756
BcepNY3
Bcep1
BcepB1A
25 %
25 %
25 %
Hc1 protein:vir:5258
protein:vir:96107
protein:vir:107716
Aaphi23
F8
BcepB1A
19 %
14 %
18 %
Ne1 protein:vir:99546
protein:vir:5257
protein:vir:80037
BcepF1
Aaphi23
B054
24 %
24 %
23 %
Tc1 protein:vir:3637
protein:vir:101569
protein:vir:106763
Bcep781
Bcep43
Bcep1
14 %
15 %
14 %