Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : StB27 | Genbank acc : NC_019914

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	34	lcl\|NC_019914.1_cdsid_YP_007236602.1	HHsearch (proba=100.00%)
Portal	31	lcl\|NC_019914.1_cdsid_YP_007236599.1	HHsearch (proba=100.00%)
TermL	30	lcl\|NC_019914.1_cdsid_YP_007236598.1	Blast (e-value=1e-169)
MTP	39	lcl\|NC_019914.1_cdsid_YP_007236607.1	Blast (e-value=5e-66)
Sheath	NOT FOUND
Ad1	35	lcl\|NC_019914.1_cdsid_YP_007236603.1	HHsearch (proba=100.00%)
Hc1	36	lcl\|NC_019914.1_cdsid_YP_007236604.1	HHsearch (proba=100.00%)
Ne1	37	lcl\|NC_019914.1_cdsid_YP_007236605.1	HHsearch (proba=100.00%)
Tc1	38	lcl\|NC_019914.1_cdsid_YP_007236606.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:106647 protein:vir:9875 protein:vir:9927	187 315.5 315.6	67 % 39 % 32 %
Portal	protein:vir:106639 protein:vir:96494 protein:vir:4898	187 2972 Sfi11	72 % 41 % 40 %
TermL	protein:vir:97165 protein:vir:95761 protein:vir:94525	85 SMP phiJL-1	74 % 62 % 42 %
MTP	protein:vir:103919 protein:vir:96224 protein:vir:99775	phiNM 69 phiETA2	61 % 61 % 61 %
Ad1	protein:vir:106596 protein:vir:78849 protein:vir:103957	187 80alpha phiNM	63 % 53 % 53 %
Hc1	protein:vir:106629 protein:vir:78844 protein:vir:103916	187 80alpha phiNM	48 % 41 % 41 %
Ne1	protein:vir:106623 protein:vir:78858 protein:vir:103917	187 80alpha phiNM	68 % 56 % 56 %
Tc1	protein:vir:106593 protein:vir:78854 protein:vir:103918	187 80alpha phiNM	41 % 35 % 35 %