Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|NC_019914.1_cdsid_YP_007236602.1 HHsearch (proba=100.00%)
Portal 31 lcl|NC_019914.1_cdsid_YP_007236599.1 HHsearch (proba=100.00%)
TermL 30 lcl|NC_019914.1_cdsid_YP_007236598.1 Blast (e-value=1e-169)
MTP 39 lcl|NC_019914.1_cdsid_YP_007236607.1 Blast (e-value=5e-66)
Sheath NOT FOUND
Ad1 35 lcl|NC_019914.1_cdsid_YP_007236603.1 HHsearch (proba=100.00%)
Hc1 36 lcl|NC_019914.1_cdsid_YP_007236604.1 HHsearch (proba=100.00%)
Ne1 37 lcl|NC_019914.1_cdsid_YP_007236605.1 HHsearch (proba=100.00%)
Tc1 38 lcl|NC_019914.1_cdsid_YP_007236606.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106647
protein:vir:9875
protein:vir:9927
187
315.5
315.6
67 %
39 %
32 %
Portal protein:vir:106639
protein:vir:96494
protein:vir:4898
187
2972
Sfi11
72 %
41 %
40 %
TermL protein:vir:97165
protein:vir:95761
protein:vir:94525
85
SMP
phiJL-1
74 %
62 %
42 %
MTP protein:vir:103919
protein:vir:96224
protein:vir:99775
phiNM
69
phiETA2
61 %
61 %
61 %
Ad1 protein:vir:106596
protein:vir:78849
protein:vir:103957
187
80alpha
phiNM
63 %
53 %
53 %
Hc1 protein:vir:106629
protein:vir:78844
protein:vir:103916
187
80alpha
phiNM
48 %
41 %
41 %
Ne1 protein:vir:106623
protein:vir:78858
protein:vir:103917
187
80alpha
phiNM
68 %
56 %
56 %
Tc1 protein:vir:106593
protein:vir:78854
protein:vir:103918
187
80alpha
phiNM
41 %
35 %
35 %