Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bphi-B1251 | Genbank acc : NC_019541

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 62

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	27	lcl\|NC_019541.1_cdsid_YP_007010608.1	HHsearch (proba=100.00%)
Portal	21	lcl\|NC_019541.1_cdsid_YP_007010602.1	HHsearch (proba=100.00%)
TermL	20	lcl\|NC_019541.1_cdsid_YP_007010601.1	Blast (e-value=6e-39)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	29	lcl\|NC_019541.1_cdsid_YP_007010610.1	HHsearch (proba=99.18%)
Hc1	30	lcl\|NC_019541.1_cdsid_YP_007010611.1	HHsearch (proba=99.92%)
Ne1	32	lcl\|NC_019541.1_cdsid_YP_007010613.1	HHsearch (proba=100.00%)
Tc1	33	lcl\|NC_019541.1_cdsid_YP_007010614.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96792 protein:vir:95131 protein:vir:78387	phiHSIC PA73 SETP3	56 % 27 % 17 %
Portal	protein:vir:95149 protein:vir:80453 protein:vir:95014	PA73 BcepGomr KS7	33 % 32 % 28 %
TermL	protein:vir:5248 protein:vir:80106 protein:vir:104336	Aaphi23 B054 RTP	27 % 26 % 26 %
Ad1	protein:vir:95176 protein:vir:94955 protein:vir:80389	PA73 Xp15 BcepGomr	20 % 22 % 17 %
Hc1	protein:vir:97237 protein:vir:104346 protein:vir:95145	M6 RTP PA73	15 % 14 % 13 %
Ne1	protein:vir:94944 protein:vir:78380 protein:vir:94994	Xp15 SETP3 KS7	32 % 31 % 28 %
Tc1	protein:vir:94921 protein:vir:97211 protein:vir:104348	Xp15 M6 RTP	25 % 20 % 20 %