Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 10 lcl|NC_019539.1_cdsid_YP_007010463.1 HHsearch (proba=100.00%)
Portal 3 lcl|NC_019539.1_cdsid_YP_007010456.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_019539.1_cdsid_YP_007010455.1 Blast (e-value=0)
MTP 19 lcl|NC_019539.1_cdsid_YP_007010472.1 Blast (e-value=0)
Sheath NOT FOUND
Ad1 14 lcl|NC_019539.1_cdsid_YP_007010467.1 HHsearch (proba=100.00%)
Hc1 16 lcl|NC_019539.1_cdsid_YP_007010469.1 HHsearch (proba=100.00%)
Ne1 17 lcl|NC_019539.1_cdsid_YP_007010470.1 HHsearch (proba=100.00%)
Tc1 18 lcl|NC_019539.1_cdsid_YP_007010471.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:78387
protein:vir:94989
protein:vir:80446
SETP3
KS7
BcepGomr
98 %
98 %
37 %
Portal protein:vir:78393
protein:vir:95014
protein:vir:95149
SETP3
KS7
PA73
99 %
94 %
34 %
TermL protein:vir:94991
protein:vir:78394
protein:vir:106551
KS7
SETP3
Lj965
98 %
97 %
20 %
MTP protein:vir:78378
protein:vir:97240
protein:vir:80398
SETP3
M6
BcepGomr
93 %
16 %
14 %
Ad1 protein:vir:78383
protein:vir:95004
protein:vir:95176
SETP3
KS7
PA73
98 %
95 %
36 %
Hc1 protein:vir:78381
protein:vir:94992
protein:vir:97237
SETP3
KS7
M6
87 %
87 %
22 %
Ne1 protein:vir:78380
protein:vir:94994
protein:vir:104347
SETP3
KS7
RTP
100 %
94 %
32 %
Tc1 protein:vir:78379
protein:vir:94997
protein:vir:103278
SETP3
KS7
JK06
100 %
96 %
24 %