BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_019539.1_cdsid_YP_007010472.1 [gene=SEP1_gp19] [protein=putative major tail protein] [protein_id=YP_007010472.1] [location=11565..12734] (389 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|11176|lcl|protein:vir:78378 Length: 389 # NCBI annotation: pu... 736 0.0 gi|15505|lcl|protein:vir:745 Length: 165 # NCBI annotation: unkn... 28 0.15 gi|13644|lcl|protein:vir:3973 Length: 165 # NCBI annotation: maj... 28 0.15 gi|9605|lcl|protein:vir:97240 Length: 510 # NCBI annotation: hyp... 25 1.6 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 24 2.6 gi|10808|lcl|protein:vir:78053 Length: 326 # NCBI annotation: gp... 24 3.0 gi|26450|lcl|protein:vir:562 Length: 265 # NCBI annotation: unkn... 24 3.3 >gi|11176|lcl|protein:vir:78378 Length: 389 # NCBI annotation: putative tail protein # Family: family:all:2098 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110846;genbank:gi:134288607;genbank:Ge neID:5179641 Length = 389 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/388 (92%), Positives = 374/388 (96%) Query: 1 MALQPYKGAMAAQFYVLETTPGVTPANPVWQPLRNTGGIPAVTRDALISNELDGSRETSS 60 MALQPYKG M AQFYVLETTPGVTPANPVWQPLRNTGGIPAVTRDAL+SNELDGS ETSS Sbjct: 1 MALQPYKGGMTAQFYVLETTPGVTPANPVWQPLRNTGGIPAVTRDALVSNELDGSSETSS 60 Query: 61 IRTGNRQVTGEYAIELSAESQDELLAGAMTSSWVAGSTKSRISVTVDPVAKTFTRTNGSF 120 IRTGN QVTGEYAIELSAESQDELLAGAM+SSWVAGST ISVTVDPVAKTFTRTNGSF Sbjct: 61 IRTGNNQVTGEYAIELSAESQDELLAGAMSSSWVAGSTAPAISVTVDPVAKTFTRTNGSF 120 Query: 121 ETDGVEVGDLVQFDGLSGNNDKAFMVTAVTATVITGAGIQHTLTAESDAQADLRIADKLE 180 TDGVEVGDLVQF+GLSGNN+KAFMVTAVTATVITGAGI+HTLTAESDAQADLRIADKLE Sbjct: 121 VTDGVEVGDLVQFNGLSGNNNKAFMVTAVTATVITGAGIRHTLTAESDAQADLRIADKLE 180 Query: 181 TGNLCKTYSILTWLKGKCGNPDSYIITRGVEFTGFTIEQAVNAMVTGSFPFIGLNQEILQ 240 TGNLCKTYSILTWLKGKCGNPDSYIITRGVEF GFTIEQAVNAMVTGSFPFIGLNQEILQ Sbjct: 181 TGNLCKTYSILTWLKGKCGNPDSYIITRGVEFPGFTIEQAVNAMVTGSFPFIGLNQEILQ 240 Query: 241 QPPSGSDFTTNFSARPFASVDVSAYDGAAPLKLIDTFTITNDNSASAQFELGNNSVAFVE 300 QPPSGS+FTTNFSARPFASVDVS YDG+APLKLIDTFTITNDN ASAQFELGN SVAFVE Sbjct: 241 QPPSGSNFTTNFSARPFASVDVSVYDGSAPLKLIDTFTITNDNGASAQFELGNKSVAFVE 300 Query: 301 RGRAANTFSLAGKLYDMTLLNKFLNETQMEVSSVLNGPDGAMSFTLKRASLTSATPEIGG 360 R RA+NTFSLAGKLYD+TLLNKFLNET+MEVSSVL+GPDGAMSFTLKRASLTSATPEIGG Sbjct: 301 RDRASNTFSLAGKLYDLTLLNKFLNETEMEVSSVLDGPDGAMSFTLKRASLTSATPEIGG 360 Query: 361 PESVTLSLEGQATGNQFQSSIVIQRIKY 388 P S+TLSL+GQATGN+FQSSIVIQRIKY Sbjct: 361 PGSITLSLDGQATGNRFQSSIVIQRIKY 388 >gi|15505|lcl|protein:vir:745 Length: 165 # NCBI annotation: unknown # Family: family:all:464 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108722;genbank:gi:13487844;genbank:GeneID :920880 Length = 165 Score = 28.5 bits (62), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 330 EVSSVLNGPDGAMSFTLKRASLTSATPEIGGPESVTLSLE---------GQATGNQFQSS 380 E+ G DG RA LTS + E +++ LSLE GQAT + Q++ Sbjct: 94 EIDKAEKGSDGKYKAKYLRAYLTSFSYEPNSEDALELSLEFGVFGKPQKGQATLTEEQAN 153 Query: 381 IV 382 +V Sbjct: 154 VV 155 >gi|13644|lcl|protein:vir:3973 Length: 165 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663681;genbank:gi:21716118;genbank:GeneID :951213 Length = 165 Score = 28.5 bits (62), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 330 EVSSVLNGPDGAMSFTLKRASLTSATPEIGGPESVTLSLE---------GQATGNQFQSS 380 E+ G DG RA LTS + E +++ LSLE GQAT + Q++ Sbjct: 94 EIDKAEKGSDGKYKAKYLRAYLTSFSYEPNSEDALELSLEFGVFGKPQKGQATLTEEQAN 153 Query: 381 IV 382 +V Sbjct: 154 VV 155 >gi|9605|lcl|protein:vir:97240 Length: 510 # NCBI annotation: hypothetical protein ORF027 # Family: family:all:7264 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294535;genbank:gi:149408256;genbank:G eneID:5237105 Length = 510 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%) Query: 15 YVLETTPGVTPANPVWQPLRNT------GGIPAVTRDALISNELDGSRETSSIRTGNRQV 68 Y E T P +PVW PL G + V R N ++ SR+ T + Sbjct: 14 YAEEDTIKNLPVSPVWYPLEPNGYNDFGGQLTTVAR-----NPINPSRQRKKGVTTDLDA 68 Query: 69 TGEYAIELSAESQDELLAG 87 +G + +L+ + LL G Sbjct: 69 SGGFGQDLTQNNLTRLLQG 87 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 24.3 bits (51), Expect = 2.6, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Query: 322 KFLNETQMEVSSVLNGPDGAMSFTLKRASLTSATPEI 358 + LN+ + + ++ N P G +F KR +L PE+ Sbjct: 286 RLLNKVRKQYEALTNNPSGREAFMTKRMNL----PEV 318 >gi|10808|lcl|protein:vir:78053 Length: 326 # NCBI annotation: gp11 # Family: family:all:3884 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468795;genbank:gi:157325376;genbank:Ge neID:5601815 Length = 326 Score = 24.3 bits (51), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 85 LAGAMTSSWVAGSTKSRISVTVDPVAKTFTRTNGSFETDG-VEVGDLVQ 132 +AG + + VAG+ K+ + V +P+ K + T+G + D+VQ Sbjct: 272 MAGKVINVSVAGTHKAYVGVGTNPIDKAIDAAQNALATEGNLTWSDVVQ 320 >gi|26450|lcl|protein:vir:562 Length: 265 # NCBI annotation: unknown # Family: family:all:6593 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046597;genbank:gi:9630170;genbank:GeneID: 1261356 Length = 265 Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 193 WLKGKCGNPDSYIITRGVEFTG 214 +LKG GN D Y+I E +G Sbjct: 42 FLKGGWGNRDLYVINSSKEVSG 63 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.313 0.129 0.361 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 162,506 Number of Sequences: 514 Number of extensions: 7019 Number of successful extensions: 14 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 8 length of query: 389 length of database: 206,069 effective HSP length: 73 effective length of query: 316 effective length of database: 168,547 effective search space: 53260852 effective search space used: 53260852 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 38 (19.2 bits)