Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ZF40 | Genbank acc : NC_019522

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 68

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	46	lcl\|NC_019522.1_cdsid_YP_007006955.1	HHsearch (proba=100.00%)
Portal	42	lcl\|NC_019522.1_cdsid_YP_007006951.1	HHsearch (proba=100.00%)
TermL	41	lcl\|NC_019522.1_cdsid_YP_007006950.1	Blast (e-value=1e-113)
MTP	NOT FOUND
Sheath	52	lcl\|NC_019522.1_cdsid_YP_007006961.1	HHsearch (proba=100.00%)
Ad1	48	lcl\|NC_019522.1_cdsid_YP_007006957.1	HHsearch (proba=100.00%)
Hc1	50	lcl\|NC_019522.1_cdsid_YP_007006959.1	HHsearch (proba=98.08%)
Ne1	49	lcl\|NC_019522.1_cdsid_YP_007006958.1	HHsearch (proba=100.00%)
Tc1	51	lcl\|NC_019522.1_cdsid_YP_007006960.1	HHsearch (proba=97.97%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80068 protein:vir:79642 protein:vir:104342	B054 TLS RTP	22 % 19 % 19 %
Portal	protein:vir:5249 protein:vir:107662 protein:vir:94049	Aaphi23 T1 OP2	26 % 22 % 20 %
TermL	protein:vir:107694 protein:vir:79648 protein:vir:104336	T1 TLS RTP	41 % 41 % 39 %
Sheath	protein:vir:5260 protein:vir:80052 protein:vir:95263	Aaphi23 B054 Felix 01	19 % 18 % 18 %
Ad1	protein:vir:5256 protein:vir:107756 protein:vir:96108	Aaphi23 BcepB1A F8	27 % 20 % 19 %
Hc1	protein:vir:95261 protein:vir:101560 protein:vir:5258	Felix 01 Bcep43 Aaphi23	14 % 17 % 13 %
Ne1	protein:vir:5257 protein:vir:96105 protein:vir:80037	Aaphi23 F8 B054	30 % 29 % 28 %
Tc1	protein:vir:78612 protein:vir:106763 protein:vir:5259	BcepNY3 Bcep1 Aaphi23	13 % 13 % 18 %