Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 46 lcl|NC_019522.1_cdsid_YP_007006955.1 HHsearch (proba=100.00%)
Portal 42 lcl|NC_019522.1_cdsid_YP_007006951.1 HHsearch (proba=100.00%)
TermL 41 lcl|NC_019522.1_cdsid_YP_007006950.1 Blast (e-value=1e-113)
MTP NOT FOUND
Sheath 52 lcl|NC_019522.1_cdsid_YP_007006961.1 HHsearch (proba=100.00%)
Ad1 48 lcl|NC_019522.1_cdsid_YP_007006957.1 HHsearch (proba=100.00%)
Hc1 50 lcl|NC_019522.1_cdsid_YP_007006959.1 HHsearch (proba=98.08%)
Ne1 49 lcl|NC_019522.1_cdsid_YP_007006958.1 HHsearch (proba=100.00%)
Tc1 51 lcl|NC_019522.1_cdsid_YP_007006960.1 HHsearch (proba=97.97%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:80068
protein:vir:79642
protein:vir:104342
B054
TLS
RTP
22 %
19 %
19 %
Portal protein:vir:5249
protein:vir:107662
protein:vir:94049
Aaphi23
T1
OP2
26 %
22 %
20 %
TermL protein:vir:107694
protein:vir:79648
protein:vir:104336
T1
TLS
RTP
41 %
41 %
39 %
Sheath protein:vir:5260
protein:vir:80052
protein:vir:95263
Aaphi23
B054
Felix 01
19 %
18 %
18 %
Ad1 protein:vir:5256
protein:vir:107756
protein:vir:96108
Aaphi23
BcepB1A
F8
27 %
20 %
19 %
Hc1 protein:vir:95261
protein:vir:101560
protein:vir:5258
Felix 01
Bcep43
Aaphi23
14 %
17 %
13 %
Ne1 protein:vir:5257
protein:vir:96105
protein:vir:80037
Aaphi23
F8
B054
30 %
29 %
28 %
Tc1 protein:vir:78612
protein:vir:106763
protein:vir:5259
BcepNY3
Bcep1
Aaphi23
13 %
13 %
18 %