Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 79 lcl|NC_019507.1_cdsid_YP_007005149.1 HHsearch (proba=100.00%)
Portal 163 lcl|NC_019507.1_cdsid_YP_007005233.1 HHsearch (proba=100.00%)
TermL 127 lcl|NC_019507.1_cdsid_YP_007005197.1 Blast (e-value=3e-25)
MTP 67 lcl|NC_019507.1_cdsid_YP_007005137.1 Blast (e-value=4e-19)
Sheath 171 lcl|NC_019507.1_cdsid_YP_007005241.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 237 lcl|NC_019507.1_cdsid_YP_007005307.1 HHsearch (proba=100.00%)
Hc2 94 lcl|NC_019507.1_cdsid_YP_007005164.1 HHsearch (proba=92.28%)
Tc2 98 lcl|NC_019507.1_cdsid_YP_007005168.1 HHsearch (proba=99.75%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad2<->Hc2 143 2
Tc2<->Hc2 4 2
Tc2<->Ad2 139 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104915
protein:vir:106998
protein:vir:103181
P-SSM2
S-PM2
Syn9
31 %
31 %
30 %
Portal protein:vir:100598
protein:vir:103177
protein:vir:106282
25
Syn9
Aeh1
29 %
28 %
28 %
TermL protein:vir:106290
protein:vir:108053
protein:vir:98262
Aeh1
JS98
RB43
33 %
30 %
30 %
MTP protein:vir:104771
protein:vir:101188
protein:vir:101805
P-SSM2
44RR2.8t
31
30 %
28 %
28 %
Sheath protein:vir:104477
protein:vir:80984
protein:vir:106427
P-SSM4
Phi1
Aeh1
24 %
23 %
22 %
Ad2 protein:vir:101153
protein:vir:101857
protein:vir:100534
44RR2.8t
31
25
24 %
24 %
24 %
Hc2 protein:vir:104739
protein:vir:103005
P-SSM2
Syn9
16 %
22 %
Tc2 protein:vir:81023
protein:vir:6591
protein:vir:101155
Phi1
RB49
44RR2.8t
33 %
33 %
31 %