Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CP21 | Genbank acc : NC_019507

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 257

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	79	lcl\|NC_019507.1_cdsid_YP_007005149.1	HHsearch (proba=100.00%)
Portal	163	lcl\|NC_019507.1_cdsid_YP_007005233.1	HHsearch (proba=100.00%)
TermL	127	lcl\|NC_019507.1_cdsid_YP_007005197.1	Blast (e-value=3e-25)
MTP	67	lcl\|NC_019507.1_cdsid_YP_007005137.1	Blast (e-value=4e-19)
Sheath	171	lcl\|NC_019507.1_cdsid_YP_007005241.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	237	lcl\|NC_019507.1_cdsid_YP_007005307.1	HHsearch (proba=100.00%)
Hc2	94	lcl\|NC_019507.1_cdsid_YP_007005164.1	HHsearch (proba=92.28%)
Tc2	98	lcl\|NC_019507.1_cdsid_YP_007005168.1	HHsearch (proba=99.75%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad2<->Hc2	143	2
Tc2<->Hc2	4	2
Tc2<->Ad2	139	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:106998 protein:vir:103181	P-SSM2 S-PM2 Syn9	31 % 31 % 30 %
Portal	protein:vir:100598 protein:vir:103177 protein:vir:106282	25 Syn9 Aeh1	29 % 28 % 28 %
TermL	protein:vir:106290 protein:vir:108053 protein:vir:98262	Aeh1 JS98 RB43	33 % 30 % 30 %
MTP	protein:vir:104771 protein:vir:101188 protein:vir:101805	P-SSM2 44RR2.8t 31	30 % 28 % 28 %
Sheath	protein:vir:104477 protein:vir:80984 protein:vir:106427	P-SSM4 Phi1 Aeh1	24 % 23 % 22 %
Ad2	protein:vir:101153 protein:vir:101857 protein:vir:100534	44RR2.8t 31 25	24 % 24 % 24 %
Hc2	protein:vir:104739 protein:vir:103005	P-SSM2 Syn9	16 % 22 %
Tc2	protein:vir:81023 protein:vir:6591 protein:vir:101155	Phi1 RB49 44RR2.8t	33 % 33 % 31 %