Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Sha1 | Genbank acc : NC_019489

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	18	lcl\|NC_019489.1_cdsid_YP_007003558.1	HHsearch (proba=100.00%)
Portal	16	lcl\|NC_019489.1_cdsid_YP_007003556.1	HHsearch (proba=100.00%)
TermL	14	lcl\|NC_019489.1_cdsid_YP_007003554.1	Blast (e-value=0)
MTP	23	lcl\|NC_019489.1_cdsid_YP_007003563.1	Blast (e-value=4e-43)
Sheath	NOT FOUND
Ad1	19	lcl\|NC_019489.1_cdsid_YP_007003559.1	HHsearch (proba=100.00%)
Hc1	20	lcl\|NC_019489.1_cdsid_YP_007003560.1	HHsearch (proba=100.00%)
Ne1	21	lcl\|NC_019489.1_cdsid_YP_007003561.1	HHsearch (proba=100.00%)
Tc1	22	lcl\|NC_019489.1_cdsid_YP_007003562.1	HHsearch (proba=99.86%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4856 protein:vir:7409 protein:vir:1025	DT1 P335 bIL286	64 % 61 % 61 %
Portal	protein:vir:3843 protein:vir:3989 protein:vir:7407	phi adh BK5-T P335	52 % 50 % 50 %
TermL	protein:vir:3986 protein:vir:7405 protein:vir:1021	BK5-T P335 bIL286	65 % 65 % 65 %
MTP	protein:vir:100188 protein:vir:100889 protein:vir:5002	phi AT3 Lc-Nu Sfi21	45 % 44 % 42 %
Ad1	protein:vir:4954 protein:vir:4857 protein:vir:4998	Sfi19 DT1 Sfi21	42 % 42 % 39 %
Hc1	protein:vir:100886 protein:vir:4955 protein:vir:100226	Lc-Nu Sfi19 phi AT3	26 % 25 % 25 %
Ne1	protein:vir:1028 protein:vir:3994 protein:vir:7412	bIL286 BK5-T P335	27 % 26 % 26 %
Tc1	protein:vir:100200 protein:vir:100888 protein:vir:5001	phi AT3 Lc-Nu Sfi21	19 % 18 % 23 %