Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CPX | Genbank acc : NC_016562

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 149

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|NC_016562.1_cdsid_YP_004956887.1	HHsearch (proba=100.00%)
Portal	24	lcl\|NC_016562.1_cdsid_YP_004956890.1	HHsearch (proba=100.00%)
TermL	27	lcl\|NC_016562.1_cdsid_YP_004956893.1	Blast (e-value=1e-42)
MTP	135	lcl\|NC_016562.1_cdsid_YP_004957001.1	Blast (e-value=2e-22)
Sheath	9	lcl\|NC_016562.1_cdsid_YP_004956875.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	26	lcl\|NC_016562.1_cdsid_YP_004956892.1	HHsearch (proba=100.00%)
Hc2	65	lcl\|NC_016562.1_cdsid_YP_004956931.1	HHsearch (proba=100.00%)
Tc2	67	lcl\|NC_016562.1_cdsid_YP_004956933.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad2<->Hc2	39	2
Tc2<->Ad2	41	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104549 protein:vir:104915	Syn9 P-SSM4 P-SSM2	32 % 32 % 31 %
Portal	protein:vir:5665 protein:vir:104500 protein:vir:103177	KVP40 P-SSM4 Syn9	30 % 28 % 28 %
TermL	protein:vir:104536 protein:vir:5662 protein:vir:104946	P-SSM4 KVP40 P-SSM2	27 % 27 % 26 %
MTP	protein:vir:104771 protein:vir:106918 protein:vir:106171	P-SSM2 S-PM2 Aeh1	31 % 29 % 27 %
Sheath	protein:vir:108052 protein:vir:80984 protein:vir:103456	JS98 Phi1 RB32	31 % 31 % 31 %
Ad2	protein:vir:107900 protein:vir:104694 protein:vir:106428	JS98 P-SSM2 Aeh1	25 % 25 % 25 %
Hc2	protein:vir:106986 protein:vir:104739 protein:vir:101154	S-PM2 P-SSM2 44RR2.8t	23 % 22 % 22 %
Tc2	protein:vir:106402 protein:vir:81023 protein:vir:6591	Aeh1 Phi1 RB49	27 % 25 % 25 %