Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-CBS1 | Genbank acc : NC_016164

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 43

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	4	lcl\|NC_016164.1_cdsid_YP_004934604.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_016164.1_cdsid_YP_004934603.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_016164.1_cdsid_YP_004934601.1	Blast (e-value=1e-58)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	2	lcl\|NC_016164.1_cdsid_YP_004934602.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_016164.1_cdsid_YP_004934609.1	HHsearch (proba=97.54%)
Ne1	43	lcl\|NC_016164.1_cdsid_YP_004934643.1	HHsearch (proba=99.04%)
Tc1	11	lcl\|NC_016164.1_cdsid_YP_004934611.1	HHsearch (proba=99.25%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	7	2
Ne1<->Hc1	34	2
Tc1<->Ad1	9	4
Ne1<->Ad1	41	3
Ne1<->Tc1	32	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:96762 protein:vir:105038 protein:vir:5739	VP882 phiKO2 PY54	32 % 20 % 20 %
Portal	protein:vir:96738 protein:vir:79538 protein:vir:10321	VP882 cdtI VHML	29 % 27 % 27 %
TermL	protein:vir:10320 protein:vir:79539 protein:vir:3418	VHML cdtI lambda	27 % 26 % 26 %
Ad1	protein:vir:96750 protein:vir:79544	VP882 cdtI	25 % 17 %
Hc1	protein:vir:395 protein:vir:3426	N15 lambda	26 % 22 %
Ne1	protein:vir:396 protein:vir:96763 protein:vir:6375	N15 VP882 BcepNazgul	14 % 12 % 16 %
Tc1	protein:vir:79571 protein:vir:397 protein:vir:3428	cdtI N15 lambda	18 % 15 % 13 %